Psyllid ID: psy17126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFNKL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccccEEEEEEccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHcccHHHHHcHHHHccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHccccEEEEEccEEEEcHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEcccHcHHHHHHHHHHccccEEEEEEEEcccccccccccEEEccccccEccccc
Coil and Loop (DISEMBL)
maakalrlppmpsiRDIIKLYKLRALKQLSqnflfeprltdKIVRNagtitgnevcevgpgpgsitrsilnrrparlvliekdprftpcldmlaqaspcpvhfhlgdVMSFTMQNmfsedrrrdwseglpgiriignlpfnvstpLIIKWIQAISENLLFPKHKRQLVVSLLERacvkpilrpyqlSVQEFGQICLAYRDMCeempglyeytledtpgdiepeavaeqegegdeidfnkl
Flexible Loop (DISEMBL)
maakalrlppmpsiRDIIKLYKLRALKQLsqnflfeprltDKIVRNAGtitgnevcevgpgpgsitrsilnrrpARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPilrpyqlsvQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAvaeqegegdeidfnkl
Low Complexity Region (SEG)
MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFNKL
Disordered region (IsUnstruct)
*************IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTL***************************
Disordered Region (DISOPRED)
******R**PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEP***************NKL
Disordered Region (DISEMBL)
MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEA****************
Disordered Region (DISPRO)
*****LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDF**L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q2TBQ0	341	Mitochondrial dimethylade	no	N/A	0.629	0.442	0.565	4e-45
Q2PG46	345	Dimethyladenosine transfe	N/A	N/A	0.604	0.420	0.583	8e-45
Q8WVM0	346	Dimethyladenosine transfe	yes	N/A	0.604	0.419	0.590	9e-45
Q5R4V9	343	Dimethyladenosine transfe	yes	N/A	0.604	0.422	0.583	3e-44
Q8JZM0	345	Dimethyladenosine transfe	yes	N/A	0.612	0.426	0.569	4e-44
Q811P6	345	Dimethyladenosine transfe	yes	N/A	0.612	0.426	0.569	4e-44
Q28HM1	346	Dimethyladenosine transfe	yes	N/A	0.620	0.430	0.54	2e-41
Q7T0W5	344	Dimethyladenosine transfe	N/A	N/A	0.641	0.447	0.522	9e-41
Q9VTM5	330	Dimethyladenosine transfe	yes	N/A	0.595	0.433	0.503	5e-35
Q2LZ79	337	Dimethyladenosine transfe	yes	N/A	0.575	0.409	0.506	4e-33

>sp|Q2TBQ0|TFB1M_BOVIN Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus GN=TFB1M PE=2 SV=2

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 113/152 (74%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R 
Sbjct: 69  ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
           W +  P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q2PG46|TFB1M_MACFA Dimethyladenosine transferase 1, mitochondrial OS=Macaca fascicularis GN=TFB1M PE=2 SV=1

 Score =  180 bits (457), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 112/149 (75%)

Query: 7   RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
           RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG +    V EVGPGPG IT
Sbjct: 11  RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70

Query: 67  RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
           RSILN   A L+++EKD RF P L ML++A+P  +    GDV++F ++  FSE  +R W 
Sbjct: 71  RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130

Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens GN=TFB1M PE=1 SV=1

 Score =  180 bits (456), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 111/149 (74%)

Query: 7   RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
           RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct: 11  RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query: 67  RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
           RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  FSE  +R W 
Sbjct: 71  RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130

Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R4V9|TFB1M_PONAB Dimethyladenosine transferase 1, mitochondrial OS=Pongo abelii GN=TFB1M PE=2 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 111/149 (74%)

Query: 7   RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
           RLPP+P+IR+IIKL +++A KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct: 11  RLPPLPTIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query: 67  RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
           RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  FSE  +R W 
Sbjct: 71  RSILNADVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130

Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPDVHIIGNLPFSVSTPLIIKWLENIS 159

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8JZM0|TFB1M_MOUSE Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus GN=Tfb1m PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 111/151 (73%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL+ LRA+KQLSQNFL + RLTDKIVR AG++    V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV+++ ++  F  + RR 
Sbjct: 69  ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q811P6|TFB1M_RAT Dimethyladenosine transferase 1, mitochondrial OS=Rattus norvegicus GN=Tfb1m PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 111/151 (73%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL+ LRA KQLSQNFL + RLTDKIVR AG++    V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV+++ ++  F ++ RR 
Sbjct: 69  ITRSILNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28HM1|TFB1M_XENTR Dimethyladenosine transferase 1, mitochondrial OS=Xenopus tropicalis GN=tfb1m PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 107/150 (71%)

Query: 7   RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
           RLPP+P+I +IIKL+ LRA KQLSQNFL + +LTDKIVR AG +    VCEVGPGPG IT
Sbjct: 11  RLPPLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGIT 70

Query: 67  RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
           RSILN     L+++EKD RF P L ML +AS   V    GD++++ M   F +  ++ W 
Sbjct: 71  RSILNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWD 130

Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
           +  P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLEQLAD 160

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA. Stimulates transcription independently of the methyltransferase activity.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7T0W5|TFB1M_XENLA Dimethyladenosine transferase 1, mitochondrial OS=Xenopus laevis GN=tfb1m PE=2 SV=1

 Score =  166 bits (421), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 107/155 (69%)

Query: 2   AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
           A    RLPP+P+I +I+KL+ LRA KQLSQNFL + +LTDKIVR AG +    VCEVGPG
Sbjct: 6   ALAKFRLPPLPTIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPG 65

Query: 62  PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
           PG ITRSILN     L+++EKD RF P L ML +AS   V    GD++++ M   F +  
Sbjct: 66  PGGITRSILNAGVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHL 125

Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
            + W +  P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 126 IKSWDDEPPNVHIIGNLPFSVSTPLIIKWLEQVAD 160

S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA. Stimulates transcription independently of the methyltransferase activity.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VTM5|TFB1M_DROME Dimethyladenosine transferase 1, mitochondrial OS=Drosophila melanogaster GN=mtTFB1 PE=2 SV=2

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 106/155 (68%), Gaps = 12/155 (7%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
            +RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I   + V EVGPGPG
Sbjct: 12  GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPG 71

Query: 64  SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
            ITRSIL R P RL+L+EKDPRF   L +L + ASP  + F  H  D++ F ++    + 
Sbjct: 72  GITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDT 131

Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
            +R        I +IGNLPF +ST L+I W+  ++
Sbjct: 132 SQR--------IHLIGNLPFAISTRLLINWLDDLA 158

Probable S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. In contrast to mtTFB2, it does not have a critical role in either transcription or regulation of the copy number of mitochondrial DNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2LZ79|TFB1M_DROPS Dimethyladenosine transferase 1, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mtTFB1 PE=3 SV=2

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 12/150 (8%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
            +RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I   + V EVGPGPG
Sbjct: 12  GMRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPG 71

Query: 64  SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFSED 120
            ITRSIL R+P RL+L+EKD RF   L +L + ASP    V  +  D++ F ++    + 
Sbjct: 72  GITRSILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDT 131

Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
            +R        I +IGNLPF++ST L+I W
Sbjct: 132 TQR--------IHLIGNLPFSISTRLLINW 153

Probable S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
328699748	221	PREDICTED: dimethyladenosine transferase	0.645	0.701	0.612	2e-52
291238518	259	PREDICTED: tfb1m protein-like [Saccoglos	0.633	0.586	0.585	6e-45
431904536	285	Mitochondrial dimethyladenosine transfer	0.912	0.768	0.436	9e-45
348565500	346	PREDICTED: dimethyladenosine transferase	0.695	0.482	0.547	1e-44
321476312	332	hypothetical protein DAPPUDRAFT_307097 [	0.620	0.448	0.573	1e-44
387915432	353	dimethyladenosine transferase 1, mitocho	0.625	0.424	0.562	3e-44
432111751	345	Dimethyladenosine transferase 1, mitocho	0.629	0.437	0.574	4e-44
194227549	348	PREDICTED: mitochondrial dimethyladenosi	0.612	0.422	0.576	1e-43
281345012	345	hypothetical protein PANDA_016957 [Ailur	0.625	0.434	0.569	2e-43
301783565	351	PREDICTED: mitochondrial dimethyladenosi	0.625	0.427	0.569	2e-43

>gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 127/155 (81%)

Query: 2   AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
            ++ +RLPP+PSIRD+IKLYKLRA+K+LSQNFL EPRL  +IVR+AG+    EVCEVGPG
Sbjct: 3   VSRIIRLPPLPSIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPG 62

Query: 62  PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
           PG+ITRSI+   P+R+++IEKD RFTP L++LA++SP P+    GDVM+F ++ MF+ED 
Sbjct: 63  PGNITRSIIQNMPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDN 122

Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
           + +W +  P I +IGNLPFNVSTPLII+W++AISE
Sbjct: 123 KMEWEDKCPQIHLIGNLPFNVSTPLIIRWLKAISE 157

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii]

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 116/152 (76%)

Query: 6   LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
           LRLPP+P+I DII++Y LRA KQLSQNFL +  LTDKIVR+AG++ G  VCEVGPGPG I
Sbjct: 4   LRLPPLPTIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGI 63

Query: 66  TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
           TRSIL+    ++++IEKD RF P L++LA+AS   +    GDVM + M+NMF  D R+ W
Sbjct: 64  TRSILHSGAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAW 123

Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
            +  P + IIGNLPF+VSTPLII+W++AIS +
Sbjct: 124 EDDPPDVHIIGNLPFSVSTPLIIRWMEAISSH 155

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|431904536|gb|ELK09918.1| Mitochondrial dimethyladenosine transferase 1 [Pteropus alecto]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/236 (43%), Positives = 144/236 (61%), Gaps = 17/236 (7%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
           + RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG 
Sbjct: 9   SFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R 
Sbjct: 69  ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIEKAFPESLKRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-NLLFPKHKRQLVVSLLERACVKPILRP 183
           W +  P + IIGNLPF+VSTPLIIKW++ +S  +  F   + Q+ ++             
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENMSHRDGPFAYGRTQMTLT------------- 175

Query: 184 YQLSVQEFGQICLAYRDMCEE-MPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFN 238
           +Q  V E   +   YRD     +P +     ++ PG  E  A  +Q+   DE D +
Sbjct: 176 FQKEVAE--HVLWEYRDGGSGLLPEVMTEFTQEVPGSAENHARGKQQHGRDESDVD 229

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348565500|ref|XP_003468541.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like [Cavia porcellus]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
           ALRLPP+P+IR+IIKL+KL+A+KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG 
Sbjct: 9   ALRLPPLPTIREIIKLFKLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F +  +R 
Sbjct: 69  ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKVEKSFPKSLKRS 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS-ENLLFPKHKRQLVVSL 171
           W +  P + IIGNLPF+VSTPLIIKW++ IS +N  F   + Q+ ++ 
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENISNQNGPFTYGRTQMTLTF 176

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 116/150 (77%)

Query: 7   RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
           RLPP+P++RD++ LY+L+A+KQLSQNFL +P+LT K+V  AG IT   VCEVGPG GS+T
Sbjct: 9   RLPPLPAVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLT 68

Query: 67  RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
           R IL+R   +LV++EKD RF P L+MLA+AS   +    GDV+S  + N F E+ +RDW+
Sbjct: 69  RVILSRNVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWT 128

Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
           +  P I IIGNLPFN++TPLII+W++AISE
Sbjct: 129 DQPPNIHIIGNLPFNIATPLIIRWLKAISE 158

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387915432|gb|AFK11325.1| dimethyladenosine transferase 1, mitochondrial [Callorhinchus milii]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 117/151 (77%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
           + RLPP+P+I +IIKLYKLRA KQLSQNFL + RLTDKIVRNAG++  + VCEVGPGPG 
Sbjct: 8   SFRLPPLPTIGEIIKLYKLRAEKQLSQNFLLDLRLTDKIVRNAGSLKDSYVCEVGPGPGG 67

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN    +L+++EKD RF P L +LA+A+P  +    GD++++ M+  F ++ + +
Sbjct: 68  ITRSILNAGITQLLVVEKDTRFIPGLQLLAEAAPGKMKIVHGDILTYKMERAFPKELQTE 127

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +G P + IIGNLPFNVSTPLII+W++ ++
Sbjct: 128 WKDGPPNVHIIGNLPFNVSTPLIIRWLENVA 158

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432111751|gb|ELK34796.1| Dimethyladenosine transferase 1, mitochondrial [Myotis davidii]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 114/155 (73%)

Query: 2   AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
           A    RLPP+P+IR+IIKL+KL+A KQLSQNFL + RLTDKIVR AG++T   V EVGPG
Sbjct: 6   AIGTFRLPPLPTIREIIKLFKLQAAKQLSQNFLLDLRLTDKIVRKAGSLTDAYVYEVGPG 65

Query: 62  PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
           PG ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  
Sbjct: 66  PGGITRSILNAGIAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKVERAFPESL 125

Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
           +R W +  P + IIGNLPFNVSTPLIIKW++ +S+
Sbjct: 126 KRQWEDDPPNVHIIGNLPFNVSTPLIIKWLENVSQ 160

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194227549|ref|XP_001493452.2| PREDICTED: mitochondrial dimethyladenosine transferase 1-like [Equus caballus]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 112/151 (74%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL++L A+KQLSQNFL + RLTDKIVR AGT+T   V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R 
Sbjct: 69  ITRSILNAGVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRH 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +  P + IIGNLPF+VSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVS 159

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 111/151 (73%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL++L+A KQLSQNFL + +LTDKIVR AG +T   V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R 
Sbjct: 69  ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +  P + IIGNLPFNVSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFNVSTPLIIKWLENVS 159

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like [Ailuropoda melanoleuca]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 111/151 (73%)

Query: 5   ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
             RLPP+P+IR+IIKL++L+A KQLSQNFL + +LTDKIVR AG +T   V EVGPGPG 
Sbjct: 9   TFRLPPLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGG 68

Query: 65  ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
           ITRSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R 
Sbjct: 69  ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQ 128

Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
           W +  P + IIGNLPFNVSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFNVSTPLIIKWLENVS 159

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
UNIPROTKB|E2RQC3	345	TFB1M "Uncharacterized protein	0.620	0.431	0.577	3.7e-54
UNIPROTKB|Q2TBQ0	341	TFB1M "Mitochondrial dimethyla	0.625	0.439	0.573	9.9e-54
UNIPROTKB|Q8WVM0	346	TFB1M "Dimethyladenosine trans	0.620	0.430	0.590	9.9e-54
UNIPROTKB|E1BWX0	350	TFB1M "Uncharacterized protein	0.641	0.44	0.538	3.3e-53
MGI|MGI:2146851	345	Tfb1m "transcription factor B1	0.620	0.431	0.577	3.7e-52
RGD|727795	345	Tfb1m "transcription factor B1	0.620	0.431	0.577	6.1e-52
UNIPROTKB|G3MZF8	226	TFB1M "Mitochondrial dimethyla	0.625	0.663	0.573	1.2e-42
ZFIN|ZDB-GENE-060929-1010	269	tfb1m "transcription factor B1	0.704	0.628	0.488	9.6e-41
FB|FBgn0261381	330	mtTFB1 "Mitochondrial Transcri	0.591	0.430	0.506	3.6e-40
UNIPROTKB|Q2LZ79	337	mtTFB1 "Dimethyladenosine tran	0.570	0.406	0.510	1.9e-39

UNIPROTKB|E2RQC3 TFB1M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 86/149 (57%), Positives = 110/149 (73%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL++L A KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R W 
Sbjct:    71 RSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRPWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
             +  P + IIGNLPF+VSTPLIIKW++ +S
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENVS 159

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

UNIPROTKB|Q2TBQ0 TFB1M "Mitochondrial dimethyladenosine transferase 1" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 86/150 (57%), Positives = 113/150 (75%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R W 
Sbjct:    71 RSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
             +  P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

UNIPROTKB|Q8WVM0 TFB1M "Dimethyladenosine transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 448 (162.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 88/149 (59%), Positives = 111/149 (74%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  FSE  +R W 
Sbjct:    71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
             +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

UNIPROTKB|E1BWX0 TFB1M "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 441 (160.3 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 83/154 (53%), Positives = 113/154 (73%)

Query:     3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
             A A  LPP+P++ +IIKL++LRA K+LSQNFL + RLTDKIVR AG +    VCEVGPGP
Sbjct:     7 AAAFHLPPLPTVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGP 66

Query:    63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
             G ITRSILN    +L+L+EKD RF P L ML++A+P  V    GD++++ M+  F    +
Sbjct:    67 GGITRSILNAGVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLK 126

Query:   123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
             ++W +  P I IIGNLPF+VSTPLI+KW++ +S+
Sbjct:   127 KNWEDEPPNIHIIGNLPFSVSTPLIVKWLENVSK 160

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

MGI|MGI:2146851 Tfb1m "transcription factor B1, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 86/149 (57%), Positives = 111/149 (74%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL+ LRA+KQLSQNFL + RLTDKIVR AG++    V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV+++ ++  F  + RR W 
Sbjct:    71 RSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
             +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

RGD|727795 Tfb1m "transcription factor B1, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 86/149 (57%), Positives = 111/149 (74%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL+ LRA KQLSQNFL + RLTDKIVR AG++    V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV+++ ++  F ++ RR W 
Sbjct:    71 RSILNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
             +  P + IIGNLPF+VSTPLIIKW++ IS
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

UNIPROTKB|G3MZF8 TFB1M "Mitochondrial dimethyladenosine transferase 1" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 86/150 (57%), Positives = 113/150 (75%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T   V EVGPGPG IT
Sbjct:    11 RLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSILN   A L+++EKD RF P L ML+ A+P  +    GDV++F ++  F E  +R W 
Sbjct:    71 RSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
             +  P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct:   131 DDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-060929-1010 tfb1m "transcription factor B1, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 83/170 (48%), Positives = 117/170 (68%)

Query:     7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
             RLPP+P+I +IIKLY L+A KQLSQNFL + RLTDKIVR AG +    VCEVGPGPG +T
Sbjct:    11 RLPPLPTIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLT 70

Query:    67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
             RSIL    A L+++EKD RF P L +L++A+P  +    GD++++ ++  F  +  + W 
Sbjct:    71 RSILKAGAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWE 130

Query:   127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISENL-LFPKHKRQLVVSLLERA 175
             +  P + IIGNLPFNVSTPLIIKW++ +S    +F   + +L ++  + A
Sbjct:   131 DDPPNLHIIGNLPFNVSTPLIIKWLEQMSNRTGIFMFGRTRLTLTFQKEA 180

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

FB|FBgn0261381 mtTFB1 "Mitochondrial Transcription Factor B1" [Drosophila melanogaster (taxid:7227)]

 Score = 374 (136.7 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
 Identities = 78/154 (50%), Positives = 106/154 (68%)

Query:     6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPGS 64
             +RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I   + V EVGPGPG 
Sbjct:    13 MRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPGG 72

Query:    65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSEDR 121
             ITRSIL R P RL+L+EKDPRF   L +L + ASP  + F  H  D++ F ++    +  
Sbjct:    73 ITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDTS 132

Query:   122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
             +R        I +IGNLPF +ST L+I W+  ++
Sbjct:   133 QR--------IHLIGNLPFAISTRLLINWLDDLA 158

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=ISS

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006417 "regulation of translation" evidence=IMP

GO:0006390 "transcription from mitochondrial promoter" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0003712 "transcription cofactor activity" evidence=ISS

UNIPROTKB|Q2LZ79 mtTFB1 "Dimethyladenosine transferase 1, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 361 (132.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 76/149 (51%), Positives = 104/149 (69%)

Query:     6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPGS 64
             +RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I   + V EVGPGPG 
Sbjct:    13 MRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPGG 72

Query:    65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCP--VHFHLGDVMSFTMQNMFSEDR 121
             ITRSIL R+P RL+L+EKD RF   L +L + ASP    V  +  D++ F ++    +  
Sbjct:    73 ITRSILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDTT 132

Query:   122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
             +R        I +IGNLPF++ST L+I W
Sbjct:   133 QR--------IHLIGNLPFSISTRLLINW 153

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006390 "transcription from mitochondrial promoter" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28HM1	TFB1M_XENTR	2, ., 1, ., 1, ., -	0.54	0.6208	0.4306	yes	N/A
Q811P6	TFB1M_RAT	2, ., 1, ., 1, ., -	0.5695	0.6125	0.4260	yes	N/A
Q5R4V9	TFB1M_PONAB	2, ., 1, ., 1, ., -	0.5838	0.6041	0.4227	yes	N/A
Q8JZM0	TFB1M_MOUSE	2, ., 1, ., 1, ., -	0.5695	0.6125	0.4260	yes	N/A
Q8WVM0	TFB1M_HUMAN	2, ., 1, ., 1, ., -	0.5906	0.6041	0.4190	yes	N/A
A8GXS7	RSMA_RICB8	2, ., 1, ., 1, ., 1, 8, 2	0.3351	0.6791	0.6082	yes	N/A
Q9VTM5	TFB1M_DROME	2, ., 1, ., 1, ., -	0.5032	0.5958	0.4333	yes	N/A
Q2LZ79	TFB1M_DROPS	2, ., 1, ., 1, ., -	0.5066	0.575	0.4094	yes	N/A
Q1RK29	RSMA_RICBR	2, ., 1, ., 1, ., 1, 8, 2	0.3351	0.6791	0.6082	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	2e-34
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	2e-25
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	4e-19
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	2e-18
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	3e-14
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	7e-08
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	3e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	0.001
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	0.001

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  124 bits (313), Expect = 2e-34
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 11  MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
            P  R++++ Y  RA K L QNFL +  + DKIV  AG   G+ V E+GPG G++T  +L
Sbjct: 2   PPRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLL 61

Query: 71  NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
             R A++  +E D    P L      +   +    GD +              D SE L 
Sbjct: 62  -ERAAKVTAVEIDRDLAPILA--ETFAEDNLTIIEGDALKV------------DLSE-LQ 105

Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
            ++++ NLP+N++TPL+   ++
Sbjct: 106 PLKVVANLPYNITTPLLFHLLE 127

Length = 272

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =   99 bits (250), Expect = 2e-25
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 14/131 (10%)

Query: 22  KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIE 81
             R  K+L QNFL +  + DKIV  A    G+ V E+GPG G++T  +L  R AR+  IE
Sbjct: 1   MFRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLL-ERAARVTAIE 59

Query: 82  KDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
            D R    L          +    GD + F            D+       +++ NLP+N
Sbjct: 60  IDRRLAEVLKERFAPYD-NLTVINGDALKF------------DFPSLAQPYKVVANLPYN 106

Query: 142 VSTPLIIKWIQ 152
           +S+P++ K ++
Sbjct: 107 ISSPILFKLLE 117

Length = 259

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 39/184 (21%)

Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
            R  K L QNFL +  +  KIV  A  + G+ V E+GPG G++T  +L +R  ++  IE 
Sbjct: 1   FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLL-KRAKKVTAIEI 59

Query: 83  DPRFTPCLDMLAQASPCPVHFHL----GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
           D R    L  L       ++ +L    GD +              D +E    ++++ NL
Sbjct: 60  DRRLAERLRKLL-----SLYENLEIIEGDALKV------------DLNEFPKQLKVVSNL 102

Query: 139 PFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL-----ERACVKPILRPY-QLSV--QE 190
           P+N+S+PLI K         L  K K +L V ++     ER   KP  + Y +LSV  Q 
Sbjct: 103 PYNISSPLIFK---------LLEKDKFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQY 153

Query: 191 FGQI 194
           F  +
Sbjct: 154 FANV 157

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 39  LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98
           + DKIVR A    G+ V E+GPG G++T  +L  R  R+  IE DPR  P L     A+ 
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELL-ERAKRVTAIEIDPRLAPRLREKFAAAD 59

Query: 99  CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
             +    GD + F            D  +  P  +++GNLP+N+STP++ K ++ 
Sbjct: 60  -NLTVIHGDALKF------------DLPKLQP-YKVVGNLPYNISTPILFKLLEE 100

Length = 169

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query: 27  KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
           ++  QNFL  P++ ++IV  A     + V E+GPG G++T   L +R  ++V IE DPR 
Sbjct: 5   RKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTT-ELAKRAKQVVAIEIDPRL 63

Query: 87  TPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
              L + LA      V     D + F+    F +D             ++GN+P+N++TP
Sbjct: 64  AKRLQEKLALHP--NVEVVHQDFLKFS----FPKDDP---------FLVVGNIPYNITTP 108

Query: 146 LIIKWIQA 153
           ++ K +  
Sbjct: 109 IVKKLLFE 116

Length = 254

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
          +R  K+L Q+FL + R+ D+IV  A    G+ V E+GPG G++T   L +R  ++  IE 
Sbjct: 1  IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDE-LAKRAKKVYAIEL 59

Query: 83 DPRFTPCLD 91
          DPR    L 
Sbjct: 60 DPRLAEFLR 68

Length = 258

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 22/127 (17%)

Query: 27  KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVL-IEKDPR 85
           K+  Q+ L  P + DKIV  A     + V E+GPG G++T  +L    A+ V+ IE DPR
Sbjct: 12  KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPR 69

Query: 86  FTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSEDRRRDWSEGLPGIRI-IGNLPFNV 142
               L    Q SP      +  GD +                    P   + + N+P+ +
Sbjct: 70  MVAELKKRFQNSPLASKLEVIEGDALKTE----------------FPYFDVCVANVPYQI 113

Query: 143 STPLIIK 149
           S+PL+ K
Sbjct: 114 SSPLVFK 120

Length = 294

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 55  VCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTM 113
           V ++G G G++  ++ +   AR+  ++  P         A A     V    GD      
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP- 60

Query: 114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLE 173
                 D   D         II + P +     + ++++     L   K    LV++L+ 
Sbjct: 61  ---PEADESFD--------VIISDPPLHHLVEDLARFLEEARRLL---KPGGVLVLTLVL 106

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 51  TGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDV 108
           +G  V E+GPG G IT++IL+R  RP  L  IE  P F   L+ L       V+   GD 
Sbjct: 48  SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----VNIINGDA 103

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG0821|consensus	326		100.0
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	100.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.97
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.97
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	99.95
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.95
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.95
KOG0820|consensus	315		99.95
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.81
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.58
PHA03412	241	putative methyltransferase; Provisional	99.56
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.45
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PRK14967	223	putative methyltransferase; Provisional	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
PHA03411	279	putative methyltransferase; Provisional	99.4
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.4
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.37
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.36
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.34
COG2890	280	HemK Methylase of polypeptide chain release factor	99.33
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.33
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.33
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.32
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.31
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.31
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.3
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.29
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.29
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.28
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.28
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.28
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.28
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.27
PRK11207	197	tellurite resistance protein TehB; Provisional	99.27
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.27
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.26
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.26
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.26
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.25
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.25
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.25
KOG3420|consensus	185		99.24
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.24
PLN02244	340	tocopherol O-methyltransferase	99.23
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.23
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.23
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.22
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.22
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.22
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.22
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.19
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.18
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.17
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.17
PRK14968	188	putative methyltransferase; Provisional	99.15
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.15
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.15
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.15
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.12
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.12
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.12
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.11
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.11
KOG2904|consensus	328		99.11
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.11
PLN02672	1082	methionine S-methyltransferase	99.1
PRK07402	196	precorrin-6B methylase; Provisional	99.1
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.09
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.08
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.08
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.07
PRK05785	226	hypothetical protein; Provisional	99.07
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.07
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.06
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.06
PRK12335	287	tellurite resistance protein TehB; Provisional	99.05
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.05
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.04
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.03
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.03
PRK04266	226	fibrillarin; Provisional	99.02
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.02
PRK08317	241	hypothetical protein; Provisional	99.01
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.0
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.99
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.99
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.99
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.98
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.98
PRK06202	232	hypothetical protein; Provisional	98.98
PLN02336	475	phosphoethanolamine N-methyltransferase	98.98
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.98
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.98
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.97
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.97
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.97
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.96
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.96
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.95
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.95
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.94
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.94
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.94
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.94
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.92
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.92
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.91
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.9
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.89
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.89
PRK06922	677	hypothetical protein; Provisional	98.89
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.88
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.87
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.87
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.86
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.86
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.86
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.86
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.84
PLN02490	340	MPBQ/MSBQ methyltransferase	98.84
TIGR03438	301	probable methyltransferase. This model represents	98.83
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.83
KOG1540|consensus	296		98.79
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.79
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.78
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.78
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.77
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.77
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.74
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.73
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.73
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.73
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.73
PRK04148	134	hypothetical protein; Provisional	98.72
KOG1270|consensus	282		98.71
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.7
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.68
COG4076	252	Predicted RNA methylase [General function predicti	98.67
KOG1500|consensus	517		98.67
PRK00811	283	spermidine synthase; Provisional	98.67
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.66
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.65
KOG3191|consensus	209		98.64
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.64
PRK04457	262	spermidine synthase; Provisional	98.63
PTZ00146	293	fibrillarin; Provisional	98.61
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.59
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.58
KOG1499|consensus	346		98.58
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.57
TIGR00438	188	rrmJ cell division protein FtsJ.	98.57
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.56
PLN03075	296	nicotianamine synthase; Provisional	98.54
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.52
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.51
PRK03612	521	spermidine synthase; Provisional	98.47
PLN02476	278	O-methyltransferase	98.43
PLN02366	308	spermidine synthase	98.41
COG0286	489	HsdM Type I restriction-modification system methyl	98.4
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.4
KOG2915|consensus	314		98.39
KOG1541|consensus	270		98.36
KOG1271|consensus	227		98.35
PRK01581	374	speE spermidine synthase; Validated	98.35
KOG2187|consensus	534		98.35
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.34
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.33
COG2520	341	Predicted methyltransferase [General function pred	98.3
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.27
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.25
COG4122	219	Predicted O-methyltransferase [General function pr	98.24
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.24
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.24
KOG2730|consensus	263		98.23
COG2521	287	Predicted archaeal methyltransferase [General func	98.22
KOG4300|consensus	252		98.21
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.14
PF13679	141	Methyltransf_32: Methyltransferase domain	98.12
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.12
PRK10742	250	putative methyltransferase; Provisional	98.11
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.09
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.09
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.09
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.08
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.06
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.01
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.0
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.97
KOG2671|consensus	421		97.94
PLN02823	336	spermine synthase	97.92
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.87
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.85
KOG1661|consensus	237		97.83
KOG2899|consensus	288		97.64
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.61
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.55
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.55
KOG3010|consensus	261		97.54
KOG2361|consensus	264		97.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.47
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.41
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.4
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.34
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.34
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.33
COG3897	218	Predicted methyltransferase [General function pred	97.33
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.32
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.29
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.26
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.26
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.23
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.21
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.19
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.09
KOG3115|consensus	249		96.99
KOG2940|consensus	325		96.98
KOG1663|consensus	237		96.97
PHA01634	156	hypothetical protein	96.94
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.92
KOG1501|consensus	636		96.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.68
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.67
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.54
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.45
KOG4058|consensus	199		96.4
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.39
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.39
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.33
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.29
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.25
KOG3987|consensus	288		96.22
PRK00536	262	speE spermidine synthase; Provisional	96.21
PRK11524	284	putative methyltransferase; Provisional	96.16
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.02
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.98
COG1568	354	Predicted methyltransferases [General function pre	95.98
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.97
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.9
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.89
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.88
KOG1975|consensus	389		95.87
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.75
KOG2912|consensus	419		95.73
COG1565	370	Uncharacterized conserved protein [Function unknow	95.61
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.46
PRK13699	227	putative methylase; Provisional	95.45
KOG2651|consensus	476		95.39
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.34
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.59
KOG2078|consensus	495		94.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	94.41
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.31
KOG0822|consensus	649		93.97
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.96
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.95
KOG3045|consensus	325		93.78
KOG3924|consensus	419		93.75
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.67
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	93.52
PRK10458	467	DNA cytosine methylase; Provisional	93.37
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	92.99
KOG4589|consensus	232		92.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.91
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	92.78
KOG1227|consensus	351		92.63
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.6
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	92.22
KOG1709|consensus	271		92.17
KOG1122|consensus	460		92.12
KOG2198|consensus	375		91.85
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.67
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	91.6
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.57
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	90.53
PTZ00357	1072	methyltransferase; Provisional	90.52
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	90.49
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	89.68
KOG2920|consensus	282		88.8
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	88.65
PLN02668	386	indole-3-acetate carboxyl methyltransferase	88.59
KOG3178|consensus	342		88.16
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.93
KOG2360|consensus	413		87.84
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	87.66
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.36
PRK10669	558	putative cation:proton antiport protein; Provision	86.69
KOG2352|consensus	482		86.69
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	86.38
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	85.66
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	85.17
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	84.94
KOG2793|consensus	248		84.91
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	84.85
COG2933	358	Predicted SAM-dependent methyltransferase [General	84.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	84.57
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	83.91
PRK09496	453	trkA potassium transporter peripheral membrane com	83.73
KOG1269|consensus	364		82.42
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	82.27
KOG1596|consensus	317		81.26
PRK15431	78	ferrous iron transport protein FeoC; Provisional	80.99
PRK07454	241	short chain dehydrogenase; Provisional	80.9
PRK07904	253	short chain dehydrogenase; Provisional	80.77
KOG1331|consensus	293		80.33
COG0863	302	DNA modification methylase [DNA replication, recom	80.17

>KOG0821|consensus

Probab=100.00  E-value=5.3e-40  Score=277.17  Aligned_cols=217  Identities=52%  Similarity=0.898  Sum_probs=198.5

Q ss_pred             ccCCCCCCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCC
Q psy17126          4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD   83 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid   83 (240)
                      .+.|+||||++|+++++|.+.++|.++||||.|.++.++|++.++.-..+.|.|||+|+|.+|+.+++.+..++..||+|
T Consensus         3 S~~RLPPlPtiRe~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D   82 (326)
T KOG0821|consen    3 STCRLPPLPTIREIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKD   82 (326)
T ss_pred             CcccCCCCchHHHHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence            45699999999999999999999999999999999999999999988889999999999999999999877899999999


Q ss_pred             cchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc-------
Q psy17126         84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-------  156 (240)
Q Consensus        84 ~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~-------  156 (240)
                      +++++.++...+..+.++.++++|++.++..+.+++...+.|++..+...|||||||+|+||+|.||++.++.       
T Consensus        83 ~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~y  162 (326)
T KOG0821|consen   83 TRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVY  162 (326)
T ss_pred             cccChHHHHHhhcCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeee
Confidence            9999999987776678999999999999999988887888999877778999999999999999999999875       


Q ss_pred             ----------------------------------cccccchh--------------------------------------
Q psy17126        157 ----------------------------------NLLFPKHK--------------------------------------  164 (240)
Q Consensus       157 ----------------------------------~~~~~~~~--------------------------------------  164 (240)
                                                        |+|++.++                                      
T Consensus       163 grt~mTLTFQ~EVAeRlCaP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEk  242 (326)
T KOG0821|consen  163 GRTQMTLTFQKEVAERLCAPTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEK  242 (326)
T ss_pred             cceeeEEehHHHHHHHhcccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccCCHHHHHH
Confidence                                              44444333                                      


Q ss_pred             -------------------------h-hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeeeEeccCCCC
Q psy17126        165 -------------------------R-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPG  218 (240)
Q Consensus       165 -------------------------~-~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~~p~~~~~~~~~~~~  218 (240)
                                               + +..+++++.+.|||+.|+-+|++|||.+|++.|.++|.+.|+++-||||..+|
T Consensus       243 V~R~vF~~RQKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~E~c~~~p~~~ay~~r~~kn  322 (326)
T KOG0821|consen  243 VVRNVFQFRQKYCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPRQLSIEQFKSLAEVYREMCDEDPQLFAYNFRKSKN  322 (326)
T ss_pred             HHHHHHHHHHHHHHccccccCCHHHHHHHHHHHHHHhcCCCccCceeeeHHHHHHHHHHHHHHhccChhhhhhccccccc
Confidence                                     2 57888999999999999999999999999999999999999999999999887


Q ss_pred             CC
Q psy17126        219 DI  220 (240)
Q Consensus       219 ~~  220 (240)
                      -+
T Consensus       323 ~e  324 (326)
T KOG0821|consen  323 EE  324 (326)
T ss_pred             cc
Confidence            43

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-35  Score=259.30  Aligned_cols=164  Identities=30%  Similarity=0.481  Sum_probs=142.3

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      .+++|++|||||+|+.++++|++.+++.++++|||||||.|+||..|++++ .+|+|||+|+++++.+++... ..+|++
T Consensus         2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~-~~~n~~   79 (259)
T COG0030           2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFA-PYDNLT   79 (259)
T ss_pred             CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcc-cccceE
Confidence            356799999999999999999999999999999999999999999999995 799999999999999998664 348999


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------------------------
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------------------------  156 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------------------------  156 (240)
                      ++++|+++++++++.            .++.||||||||||||++++|++....                          
T Consensus        80 vi~~DaLk~d~~~l~------------~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg  147 (259)
T COG0030          80 VINGDALKFDFPSLA------------QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYG  147 (259)
T ss_pred             EEeCchhcCcchhhc------------CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccc
Confidence            999999999987653            358999999999999999999987532                          


Q ss_pred             -------cccccchh----------------------------------------------------h----hh--HHHH
Q psy17126        157 -------NLLFPKHK----------------------------------------------------R----QL--VVSL  171 (240)
Q Consensus       157 -------~~~~~~~~----------------------------------------------------~----~~--~~~~  171 (240)
                             |+|+++++                                                    +    ..  ..+.
T Consensus       148 ~LsV~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~~~~~  227 (259)
T COG0030         148 RLSVLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEV  227 (259)
T ss_pred             hhhhhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHH
Confidence                   55555444                                                    0    11  2478


Q ss_pred             HHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126        172 LERACVKPILRPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       172 l~~~gi~~~~R~e~ls~~~f~~L~~~l~~  200 (240)
                      +..+|++++.|+|+||+++|++|++.+..
T Consensus       228 l~~~~i~~~~R~e~ls~~~f~~L~~~l~~  256 (259)
T COG0030         228 LEAAGIDPNARAENLSPEDFLKLANALKG  256 (259)
T ss_pred             HHhcCCCcccChhhCCHHHHHHHHHHHhh
Confidence            99999999999999999999999998865

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.97  E-value=2.5e-31  Score=235.14  Aligned_cols=129  Identities=32%  Similarity=0.610  Sum_probs=116.3

Q ss_pred             CCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126         10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC   89 (240)
Q Consensus        10 ~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~   89 (240)
                      ++++++++++.++++++++|||||++|+.++++|++.+.+.++++|||||||+|.+|..+++++ .+|+|+|+|++|++.
T Consensus         1 ~~~~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~   79 (272)
T PRK00274          1 SPPRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPI   79 (272)
T ss_pred             CchhHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence            4678999999999999999999999999999999999999899999999999999999999985 599999999999999


Q ss_pred             HHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126         90 LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus        90 l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      ++++...  ++++++++|+.+++++++             .++.|||||||+|+++++++++...
T Consensus        80 ~~~~~~~--~~v~~i~~D~~~~~~~~~-------------~~~~vv~NlPY~iss~ii~~~l~~~  129 (272)
T PRK00274         80 LAETFAE--DNLTIIEGDALKVDLSEL-------------QPLKVVANLPYNITTPLLFHLLEER  129 (272)
T ss_pred             HHHhhcc--CceEEEEChhhcCCHHHc-------------CcceEEEeCCccchHHHHHHHHhcC
Confidence            9876532  689999999999876542             1478999999999999999999753

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=234.09  Aligned_cols=118  Identities=28%  Similarity=0.426  Sum_probs=107.1

Q ss_pred             HhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--
Q psy17126         20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--   97 (240)
Q Consensus        20 ~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--   97 (240)
                      .+|++++|++|||||+|+.++++|++.+.+.++++|||||||+|.+|..+++.+ .+|+|+|+|++|++.+++++...  
T Consensus         5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~   83 (294)
T PTZ00338          5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPL   83 (294)
T ss_pred             cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999999999999999999999999984 79999999999999999876543  


Q ss_pred             CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126         98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus        98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      .++++++++|+++.+++               .+|+||+||||+|++|+++++++.
T Consensus        84 ~~~v~ii~~Dal~~~~~---------------~~d~VvaNlPY~Istpil~~ll~~  124 (294)
T PTZ00338         84 ASKLEVIEGDALKTEFP---------------YFDVCVANVPYQISSPLVFKLLAH  124 (294)
T ss_pred             CCcEEEEECCHhhhccc---------------ccCEEEecCCcccCcHHHHHHHhc
Confidence            36899999999987643               358999999999999999999975

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=99.95  E-value=2.1e-28  Score=215.29  Aligned_cols=118  Identities=34%  Similarity=0.640  Sum_probs=104.4

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      .+++|+||||||+|+.++++|++.+++.+++.|||||||+|.+|..|++.+ .+|++||+|+.+++.+++... ..++++
T Consensus         2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~   79 (262)
T PF00398_consen    2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVE   79 (262)
T ss_dssp             -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEE
T ss_pred             CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccce
Confidence            367899999999999999999999999999999999999999999999996 899999999999999998654 348899


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ++++|+++++......          .....|||||||+++++++.+++.
T Consensus        80 vi~~D~l~~~~~~~~~----------~~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   80 VINGDFLKWDLYDLLK----------NQPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             EEES-TTTSCGGGHCS----------SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred             eeecchhccccHHhhc----------CCceEEEEEecccchHHHHHHHhh
Confidence            9999999998765331          356899999999999999999998

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=210.22  Aligned_cols=114  Identities=32%  Similarity=0.562  Sum_probs=102.6

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      ++++|+||||||+|+.++++|++.++..++++|||||||+|.+|..++++ +.+|+|||+|+.|++.++++... .++++
T Consensus         1 ~~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-~~~v~   78 (258)
T PRK14896          1 IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-AGNVE   78 (258)
T ss_pred             CCCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-CCCEE
Confidence            36899999999999999999999999889999999999999999999998 47999999999999999987654 36899


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ++++|+++++++               .+|.|||||||+++++++.+++..
T Consensus        79 ii~~D~~~~~~~---------------~~d~Vv~NlPy~i~s~~~~~l~~~  114 (258)
T PRK14896         79 IIEGDALKVDLP---------------EFNKVVSNLPYQISSPITFKLLKH  114 (258)
T ss_pred             EEEeccccCCch---------------hceEEEEcCCcccCcHHHHHHHhh
Confidence            999999987653               258999999999999999998864

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.95  E-value=1.7e-27  Score=208.42  Aligned_cols=116  Identities=34%  Similarity=0.619  Sum_probs=102.6

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      ++++|+|||||++|+.++++|++.++..++++|||||||+|.+|..+++++ .+|+++|+|++|++.++++... .++++
T Consensus         1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-~~~v~   78 (253)
T TIGR00755         1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-YERLE   78 (253)
T ss_pred             CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-CCcEE
Confidence            468999999999999999999999998899999999999999999999985 6899999999999999876643 47899


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ++++|+.++++...            ...+.||||+||+++++++.+++.
T Consensus        79 v~~~D~~~~~~~~~------------d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        79 VIEGDALKVDLPDF------------PKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             EEECchhcCChhHc------------CCcceEEEcCChhhHHHHHHHHhc
Confidence            99999999876531            112689999999999999999995

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG0820|consensus

Probab=99.95  E-value=1.1e-27  Score=207.74  Aligned_cols=161  Identities=24%  Similarity=0.348  Sum_probs=140.7

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      ..+-+.++++++|||++.++.+++.|++.+++++++.|||||||||.||..|++.+ ++|+|+|+|++|+..+.++.++.
T Consensus        25 ~~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gt  103 (315)
T KOG0820|consen   25 PNSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGT  103 (315)
T ss_pred             ccccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCC
Confidence            34567889999999999999999999999999999999999999999999999985 89999999999999999988776


Q ss_pred             C--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHH
Q psy17126         98 P--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLER  174 (240)
Q Consensus        98 ~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~  174 (240)
                      +  +++++++||+++.+++.               +|.||+|+||+||||+++++|.+...+.|.+.+++ +++.++.++
T Consensus       104 p~~~kLqV~~gD~lK~d~P~---------------fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~  168 (315)
T KOG0820|consen  104 PKSGKLQVLHGDFLKTDLPR---------------FDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVAR  168 (315)
T ss_pred             CccceeeEEecccccCCCcc---------------cceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccC
Confidence            6  78999999999988753               68999999999999999999999888999999998 999998777


Q ss_pred             cCCCCCCCCCCCCHHHHHHHH
Q psy17126        175 ACVKPILRPYQLSVQEFGQIC  195 (240)
Q Consensus       175 ~gi~~~~R~e~ls~~~f~~L~  195 (240)
                      .| ++-.++-++.++-|++..
T Consensus       169 pg-d~~Ycrlsin~q~~a~v~  188 (315)
T KOG0820|consen  169 PG-DSLYCRLSINVQLLARVT  188 (315)
T ss_pred             CC-CchhceeehhhHHhhcch
Confidence            77 555555555554444443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.81  E-value=2.1e-19  Score=147.96  Aligned_cols=122  Identities=33%  Similarity=0.532  Sum_probs=101.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      +++|++.+++.++++|||||||+|.+|..++++ ..+|+|+|+|+.|++.++++... .++++++++|+.++++++    
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~----   75 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPK----   75 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccc----
Confidence            577888899888999999999999999999998 57999999999999999987654 368999999999987543    


Q ss_pred             hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERAC  176 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~g  176 (240)
                               ..+|.|+||+||+++++++.++++......-.+-+++ ++++++.++.|
T Consensus        76 ---------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       76 ---------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             ---------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence                     2469999999999999999999986442222333445 88888887777

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.3e-14  Score=120.71  Aligned_cols=113  Identities=22%  Similarity=0.275  Sum_probs=94.9

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      .++..+-| |.++..++..|+..+.   .-.|.+|+|+|||||.|+...+..++.+|+|||+|+++++.+++|+.+..++
T Consensus        16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~   94 (198)
T COG2263          16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD   94 (198)
T ss_pred             CCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCc
Confidence            46667778 9999999999887663   3367899999999999999999988889999999999999999998877789


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC-----CHHHHHHHHHh
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV-----STPLIIKWIQA  153 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I-----ss~il~~ll~~  153 (240)
                      +.++.+|+.+++                .+++.||.||||..     ..|.+.+.++-
T Consensus        95 v~f~~~dv~~~~----------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263          95 VEFVVADVSDFR----------------GKFDTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             eEEEEcchhhcC----------------CccceEEECCCCccccccCCHHHHHHHHHh
Confidence            999999998864                35689999999965     45566666654

>PHA03412 putative methyltransferase; Provisional

Probab=99.56  E-value=2e-14  Score=124.27  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             HHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC----CCeEEEEeCCcchHHHHHHHH
Q psy17126         19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR----PARLVLIEKDPRFTPCLDMLA   94 (240)
Q Consensus        19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~----~~~V~avEid~~m~~~l~~~~   94 (240)
                      +...+..++++|| |.+...++..++...  ..+.+|||+|||+|.++..++++.    ..+|+|||+|+.+++.++++.
T Consensus        20 ~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~   96 (241)
T PHA03412         20 HEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV   96 (241)
T ss_pred             ccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence            3445667888999 889999998886432  246799999999999999998752    358999999999999999764


Q ss_pred             hcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         95 QASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        95 ~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                          .++.++++|+...++.              +++|.||+||||..
T Consensus        97 ----~~~~~~~~D~~~~~~~--------------~~FDlIIsNPPY~~  126 (241)
T PHA03412         97 ----PEATWINADALTTEFD--------------TLFDMAISNPPFGK  126 (241)
T ss_pred             ----cCCEEEEcchhccccc--------------CCccEEEECCCCCC
Confidence                3588999999865431              36899999999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=5.9e-13  Score=112.96  Aligned_cols=95  Identities=22%  Similarity=0.270  Sum_probs=83.2

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD  107 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D  107 (240)
                      .|| ++..|.++.+|++.+.++++++|||||||+|..|..|++.. .+|++||.++.+.+.++++++..+ .|+.++++|
T Consensus        51 ~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD  128 (209)
T COG2518          51 CGQ-TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGD  128 (209)
T ss_pred             CCc-eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence            566 78899999999999999999999999999999999999984 699999999999999999988776 689999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecC
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      -..             +|.+..+||+|+-+-
T Consensus       129 G~~-------------G~~~~aPyD~I~Vta  146 (209)
T COG2518         129 GSK-------------GWPEEAPYDRIIVTA  146 (209)
T ss_pred             ccc-------------CCCCCCCcCEEEEee
Confidence            865             455556788876553

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=2.3e-13  Score=118.49  Aligned_cols=103  Identities=15%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEE
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHL  105 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~  105 (240)
                      =|-+|-+|.-++...+   ......+|||+|||+|.++..++++. ..+|+|||++++|++.|+++.+..  ..++++++
T Consensus        25 ~~~~~~~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~  101 (248)
T COG4123          25 CGFRYGTDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE  101 (248)
T ss_pred             CccccccHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence            3455667766655543   44457899999999999999999984 379999999999999999987653  38999999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                      +|+.++.-...+           .++|.||+||||+-...
T Consensus       102 ~Di~~~~~~~~~-----------~~fD~Ii~NPPyf~~~~  130 (248)
T COG4123         102 ADIKEFLKALVF-----------ASFDLIICNPPYFKQGS  130 (248)
T ss_pred             hhHHHhhhcccc-----------cccCEEEeCCCCCCCcc
Confidence            999886432211           35899999999976543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.44  E-value=6.7e-13  Score=109.53  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=74.5

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCC-eEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPA-RLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~-~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +++.+...++.+|||+|||+|.++..++++.+. +|+++|+++.+++.+++++...+ .+++++++|+.+.- .      
T Consensus        23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~------   95 (170)
T PF05175_consen   23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-P------   95 (170)
T ss_dssp             HHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-C------
T ss_pred             HHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-c------
Confidence            334333336789999999999999999998653 79999999999999999887655 34999999987631 1      


Q ss_pred             hcccccCCCCceEEEecCCCCCCHH----HHHHHHHhccc
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFNVSTP----LIIKWIQAISE  156 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~Iss~----il~~ll~~~~~  156 (240)
                             ..++|.||+|||+.....    .+.+++++...
T Consensus        96 -------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~  128 (170)
T PF05175_consen   96 -------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARR  128 (170)
T ss_dssp             -------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHH
T ss_pred             -------ccceeEEEEccchhcccccchhhHHHHHHHHHH
Confidence                   147899999999876655    56677766543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=8.9e-13  Score=119.63  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD  107 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D  107 (240)
                      |-..-..++.++..|+..+.+.++++|||+|||||.++..++.. ..+|+|+|+|+.|+..++.+++..+ .+++++++|
T Consensus       160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D  238 (329)
T TIGR01177       160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD  238 (329)
T ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence            33345678899999999988899999999999999999988876 4799999999999999998876654 458999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +.++++..             +.+|.|++|+||.+.+
T Consensus       239 ~~~l~~~~-------------~~~D~Iv~dPPyg~~~  262 (329)
T TIGR01177       239 ATKLPLSS-------------ESVDAIATDPPYGRST  262 (329)
T ss_pred             hhcCCccc-------------CCCCEEEECCCCcCcc
Confidence            99876532             3689999999998754

This family is found exclusively in the Archaea.

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=1.9e-12  Score=111.18  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      +..++..++....+.++++|||+|||+|.++..++..+..+|+++|+|+.++..+++++...+.+++++++|+.+. +.+
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~   99 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEF   99 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccC
Confidence            4556666666667778899999999999999999987545999999999999999988765445688999998653 111


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                                   .++|.|++|+||..++
T Consensus       100 -------------~~fD~Vi~npPy~~~~  115 (223)
T PRK14967        100 -------------RPFDVVVSNPPYVPAP  115 (223)
T ss_pred             -------------CCeeEEEECCCCCCCC
Confidence                         3689999999997654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=7.9e-13  Score=122.87  Aligned_cols=107  Identities=18%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             hhccCccccCCHHH------HHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         26 LKQLSQNFLFEPRL------TDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i------~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      +..||.+|.+++.+      .+.+++.+  .+.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++++.
T Consensus       218 ~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~  297 (423)
T PRK14966        218 REFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD  297 (423)
T ss_pred             eeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45577777776543      23444432  13456799999999999999998753 46999999999999999998876


Q ss_pred             CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      .+.+++++++|+.+..++.            .+++|.||+||||..++
T Consensus       298 ~g~rV~fi~gDl~e~~l~~------------~~~FDLIVSNPPYI~~~  333 (423)
T PRK14966        298 LGARVEFAHGSWFDTDMPS------------EGKWDIIVSNPPYIENG  333 (423)
T ss_pred             cCCcEEEEEcchhcccccc------------CCCccEEEECCCCCCcc
Confidence            5568999999997643221            13689999999996554

>PHA03411 putative methyltransferase; Provisional

Probab=99.40  E-value=1.1e-12  Score=115.85  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=76.3

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD  107 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D  107 (240)
                      .|| |.+++.++..++.  ......+|||+|||+|.++..++.+. ..+|+++|+++.|++.++++.    ++++++++|
T Consensus        45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D  117 (279)
T PHA03411         45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSD  117 (279)
T ss_pred             cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECc
Confidence            588 8899999876653  33456799999999999999998864 369999999999999998753    468999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +.++...              ..+|.||+|+||....
T Consensus       118 ~~e~~~~--------------~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        118 VFEFESN--------------EKFDVVISNPPFGKIN  140 (279)
T ss_pred             hhhhccc--------------CCCcEEEEcCCccccC
Confidence            9875321              3589999999998643

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.40  E-value=4e-12  Score=96.51  Aligned_cols=75  Identities=21%  Similarity=0.229  Sum_probs=60.7

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      |+.+|||||||+|.++..+++. ...+|+|||+|+.|++.++++...  ..++++++++|+ ......            
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------------
Confidence            5789999999999999999993 357999999999999999998732  348999999999 322221            


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                      ..++|.|+++.
T Consensus        68 ~~~~D~v~~~~   78 (112)
T PF12847_consen   68 LEPFDLVICSG   78 (112)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCCCCEEEECC
Confidence            13589998877

...

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=8.3e-13  Score=101.19  Aligned_cols=81  Identities=21%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      |.+|||+|||+|.++..+++.+..+++|+|+|+..++.++.+.....  .+++++++|+.+..  ..+.         .+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~---------~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLP---------DG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCT---------TT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhcc---------Cc
Confidence            56899999999999999999865799999999999999999876543  67999999998764  1111         14


Q ss_pred             CceEEEecCCCCCC
Q psy17126        130 PGIRIIGNLPFNVS  143 (240)
Q Consensus       130 ~~~~VvsNlPY~Is  143 (240)
                      ++|.|++|+||...
T Consensus        70 ~~D~Iv~npP~~~~   83 (117)
T PF13659_consen   70 KFDLIVTNPPYGPR   83 (117)
T ss_dssp             -EEEEEE--STTSB
T ss_pred             eeEEEEECCCCccc
Confidence            78999999999754

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.37  E-value=4.5e-12  Score=110.07  Aligned_cols=84  Identities=13%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL  105 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~  105 (240)
                      |+|+    +..+-+.+++.+...+|.+|||||||||.+|..+++.. .++|+|+|+++.|++.++++....+ .++++++
T Consensus        32 S~g~----~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~  107 (238)
T COG2226          32 SFGL----HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV  107 (238)
T ss_pred             cCcc----hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence            5666    46677778888787799999999999999999999974 3799999999999999999876543 4499999


Q ss_pred             cccccccccc
Q psy17126        106 GDVMSFTMQN  115 (240)
Q Consensus       106 ~D~~~~~~~~  115 (240)
                      +|++++++++
T Consensus       108 ~dAe~LPf~D  117 (238)
T COG2226         108 GDAENLPFPD  117 (238)
T ss_pred             echhhCCCCC
Confidence            9999999876

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=9.6e-12  Score=106.27  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=79.3

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL  105 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~  105 (240)
                      .|| .+..|.+...+++.+.+.++++|||||||+|.+|..+++...  ++|+++|++++|++.++++++..+ .++++++
T Consensus        55 ~g~-~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~  133 (212)
T PRK13942         55 YGQ-TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV  133 (212)
T ss_pred             CCC-EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence            456 578899999999999999999999999999999999988632  699999999999999999877654 6799999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecC
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      +|+......             ..+||+|+.+-
T Consensus       134 gd~~~~~~~-------------~~~fD~I~~~~  153 (212)
T PRK13942        134 GDGTLGYEE-------------NAPYDRIYVTA  153 (212)
T ss_pred             CCcccCCCc-------------CCCcCEEEECC
Confidence            998764221             14678887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.36  E-value=7.4e-12  Score=106.89  Aligned_cols=108  Identities=17%  Similarity=0.084  Sum_probs=83.2

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      .+..+.++..+++.+.+.++++|||||||+|.+|..+++...  ++|+++|+++.+++.+++++...+ ++++++++|+.
T Consensus        59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~  138 (215)
T TIGR00080        59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT  138 (215)
T ss_pred             EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc
Confidence            567788999999999999999999999999999999998742  469999999999999999877654 68999999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      +....             ..+||.|+.+.+..--.+.+.+.|..
T Consensus       139 ~~~~~-------------~~~fD~Ii~~~~~~~~~~~~~~~L~~  169 (215)
T TIGR00080       139 QGWEP-------------LAPYDRIYVTAAGPKIPEALIDQLKE  169 (215)
T ss_pred             cCCcc-------------cCCCCEEEEcCCcccccHHHHHhcCc
Confidence            63211             13688888776532222334444443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.34  E-value=3.7e-12  Score=110.53  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=60.1

Q ss_pred             ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEE
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFH  104 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi  104 (240)
                      ++|+    +..+.+++++.+...++.+|||+|||||.+|..++++.  .++|+|+|+++.|++.++++....+ .+++++
T Consensus        28 s~g~----~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v  103 (233)
T PF01209_consen   28 SFGQ----DRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV  103 (233)
T ss_dssp             -------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred             CCcH----HHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence            4565    45566677777788889999999999999999999873  2699999999999999998876543 589999


Q ss_pred             EcccccccccccchhhhcccccCCCCceEEEec
Q psy17126        105 LGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       105 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      ++|++++++++             +.+|.|++.
T Consensus       104 ~~da~~lp~~d-------------~sfD~v~~~  123 (233)
T PF01209_consen  104 QGDAEDLPFPD-------------NSFDAVTCS  123 (233)
T ss_dssp             E-BTTB--S-T-------------T-EEEEEEE
T ss_pred             EcCHHHhcCCC-------------CceeEEEHH
Confidence            99999998765             357877754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=6.4e-12  Score=111.85  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      +|||||||||.++..++...+ .+|+|+|+|++.++.+++|+...+ .++.++++|+.+    .+           .+++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~----~~-----------~~~f  177 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE----PL-----------RGKF  177 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc----cc-----------CCce
Confidence            799999999999999999864 599999999999999999987765 667777777644    11           1368


Q ss_pred             eEEEecCCCCCCH
Q psy17126        132 IRIIGNLPFNVST  144 (240)
Q Consensus       132 ~~VvsNlPY~Iss  144 (240)
                      |.||+||||=-.+
T Consensus       178 DlIVsNPPYip~~  190 (280)
T COG2890         178 DLIVSNPPYIPAE  190 (280)
T ss_pred             eEEEeCCCCCCCc
Confidence            9999999994443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.33  E-value=3.5e-12  Score=111.00  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=83.9

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      +++..-++.+.|.++-.+...+++.+++.+...++.+|||+|||+|.++..++..+ .+|+++|+++.|++.++++.   
T Consensus         9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~---   84 (251)
T PRK10258          9 IAAAFGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKD---   84 (251)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhC---
Confidence            33333356677888777778888889988877677899999999999999998874 79999999999999988653   


Q ss_pred             CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                       ....++++|+..+++.+             +.+|.|++|.++.
T Consensus        85 -~~~~~~~~d~~~~~~~~-------------~~fD~V~s~~~l~  114 (251)
T PRK10258         85 -AADHYLAGDIESLPLAT-------------ATFDLAWSNLAVQ  114 (251)
T ss_pred             -CCCCEEEcCcccCcCCC-------------CcEEEEEECchhh
Confidence             23568899998876533             3689999998754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.33  E-value=2.1e-11  Score=103.56  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=83.1

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEE
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFH  104 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi  104 (240)
                      .|+ .+..+.+...+++.+.+.++++|||||||+|.+|..+++..  .++|+++|+++.|++.+++++...+  ++++++
T Consensus        51 ~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~  129 (205)
T PRK13944         51 AGA-TISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY  129 (205)
T ss_pred             CCC-EechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            344 45567888999999998899999999999999999998763  2699999999999999998876544  469999


Q ss_pred             EcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        105 LGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       105 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ++|+.+... .            ..++|.|+++....--.+.+.+.|.
T Consensus       130 ~~d~~~~~~-~------------~~~fD~Ii~~~~~~~~~~~l~~~L~  164 (205)
T PRK13944        130 HGDGKRGLE-K------------HAPFDAIIVTAAASTIPSALVRQLK  164 (205)
T ss_pred             ECCcccCCc-c------------CCCccEEEEccCcchhhHHHHHhcC
Confidence            999976321 1            1368999988764332333444444

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.32  E-value=9.7e-12  Score=103.05  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             HHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcc
Q psy17126         44 VRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .+.+...++++|||+|||+|.++..++..+. +|+++|+++.|++.++++....+.+++++++|+.+...          
T Consensus        12 ~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----------   80 (179)
T TIGR00537        12 EANLRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVR----------   80 (179)
T ss_pred             HHHHHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccC----------
Confidence            3334445668999999999999999999864 99999999999999999876555578899999866321          


Q ss_pred             cccCCCCceEEEecCCCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~Is  143 (240)
                           +++|.|++|+||...
T Consensus        81 -----~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        81 -----GKFDVILFNPPYLPL   95 (179)
T ss_pred             -----CcccEEEECCCCCCC
Confidence                 358999999999643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.31  E-value=1.9e-11  Score=112.99  Aligned_cols=101  Identities=15%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~  114 (240)
                      .+.+++.++...+.+|||+|||+|.++..++++.+ .+|+++|+|+.+++.++++.+...    .+++++.+|+.+. ++
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            34466777655567999999999999999998753 699999999999999998875432    3688898888642 11


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCC----CHHHHHHHHHhc
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNV----STPLIIKWIQAI  154 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~I----ss~il~~ll~~~  154 (240)
                                   +.++|.|++||||+.    +..+..+++.+.
T Consensus       296 -------------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a  326 (378)
T PRK15001        296 -------------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHA  326 (378)
T ss_pred             -------------CCCEEEEEECcCcccCccCCHHHHHHHHHHH
Confidence                         136899999999963    345555665543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.31  E-value=2.2e-11  Score=103.39  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             HHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      +.+.++..+. ..++.+|||+|||+|.++..++.+++.+|++||+++.+++.++++++..+ .+++++++|+.+. +...
T Consensus        40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~~~  118 (199)
T PRK10909         40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LAQP  118 (199)
T ss_pred             HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hhhc
Confidence            4444555543 24678999999999999997666666899999999999999999876554 5799999998653 1110


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                                 ..++|+||.||||.-.
T Consensus       119 -----------~~~fDlV~~DPPy~~g  134 (199)
T PRK10909        119 -----------GTPHNVVFVDPPFRKG  134 (199)
T ss_pred             -----------CCCceEEEECCCCCCC
Confidence                       1358999999998643

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.30  E-value=1.9e-11  Score=115.14  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      +++.+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.+++++...+ .+++++++|+.+.- ... 
T Consensus       285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~-  361 (443)
T PRK13168        285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ-  361 (443)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh-
Confidence            45556666677788999999999999999999885 799999999999999999876544 57999999997631 111 


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                            .|. ..++|.|+.||||.-....+ +.+..
T Consensus       362 ------~~~-~~~fD~Vi~dPPr~g~~~~~-~~l~~  389 (443)
T PRK13168        362 ------PWA-LGGFDKVLLDPPRAGAAEVM-QALAK  389 (443)
T ss_pred             ------hhh-cCCCCEEEECcCCcChHHHH-HHHHh
Confidence                  011 13589999999997655555 44443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.29  E-value=2.7e-11  Score=106.32  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=77.6

Q ss_pred             hccCccccCCH----------HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         27 KQLSQNFLFEP----------RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        27 k~~gQ~fl~d~----------~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      ..+|.+|.+++          .+++.++......++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++..
T Consensus        74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             eEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            34566665553          345555544555677899999999999999999875 3799999999999999999876


Q ss_pred             -cCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         96 -ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        96 -~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                       ....+++++++|+.+.. .             .+++|.||+|+||.-+
T Consensus       154 ~~~~~~i~~~~~d~~~~~-~-------------~~~fD~Iv~npPy~~~  188 (275)
T PRK09328        154 HGLGARVEFLQGDWFEPL-P-------------GGRFDLIVSNPPYIPE  188 (275)
T ss_pred             hCCCCcEEEEEccccCcC-C-------------CCceeEEEECCCcCCc
Confidence             33368999999985421 1             1368999999999543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.29  E-value=9.4e-12  Score=106.36  Aligned_cols=98  Identities=22%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL  105 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~  105 (240)
                      .|| .+..|.+..+|++.+.++++++|||||||||.+|..|+....  ++|++||+++.+++.+++++...+ .|+++++
T Consensus        51 ~~~-~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~  129 (209)
T PF01135_consen   51 CGQ-TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV  129 (209)
T ss_dssp             TTE-EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred             cee-echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence            345 678899999999999999999999999999999999998632  479999999999999999887654 6899999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +|...-             |....+||.|+.+--.
T Consensus       130 gdg~~g-------------~~~~apfD~I~v~~a~  151 (209)
T PF01135_consen  130 GDGSEG-------------WPEEAPFDRIIVTAAV  151 (209)
T ss_dssp             S-GGGT-------------TGGG-SEEEEEESSBB
T ss_pred             cchhhc-------------cccCCCcCEEEEeecc
Confidence            998652             2222578998887543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.28  E-value=2.4e-11  Score=108.17  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             hccCccccCCHH----------HHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHH
Q psy17126         27 KQLSQNFLFEPR----------LTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLA   94 (240)
Q Consensus        27 k~~gQ~fl~d~~----------i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~   94 (240)
                      ..+|..|.+++.          ++..+++.+. ..+..+|||+|||+|.++..++...+ .+|+|+|+++.+++.+++++
T Consensus        79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            335666655543          3344443332 22336899999999999999998753 69999999999999999987


Q ss_pred             hcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         95 QASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        95 ~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ...+  ++++++++|+.+. ++.             .++|.||+||||--++
T Consensus       159 ~~~~~~~~v~~~~~d~~~~-~~~-------------~~fDlIvsNPPyi~~~  196 (284)
T TIGR00536       159 EKNQLEHRVEFIQSNLFEP-LAG-------------QKIDIIVSNPPYIDEE  196 (284)
T ss_pred             HHcCCCCcEEEEECchhcc-CcC-------------CCccEEEECCCCCCcc
Confidence            6544  4599999998752 211             2589999999995443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.28  E-value=2.6e-11  Score=106.88  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=84.9

Q ss_pred             hCchhhhccCccccCCHH--HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC
Q psy17126         21 YKLRALKQLSQNFLFEPR--LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP   98 (240)
Q Consensus        21 ~~~~~~k~~gQ~fl~d~~--i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~   98 (240)
                      ...+.-+-||.+|+....  ....+++.+.+.++.+|||||||+|.++..++.....+|+|+|+++.|++.++++... .
T Consensus        20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~   98 (263)
T PTZ00098         20 GIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-K   98 (263)
T ss_pred             cchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-C
Confidence            344566779999998864  4788999999999999999999999999999876446999999999999999986543 3


Q ss_pred             CCeEEEEcccccccccccchhhhcccccCCCCceEEEecC
Q psy17126         99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus        99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      ++++++++|+.+.++++             +++|+|+++-
T Consensus        99 ~~i~~~~~D~~~~~~~~-------------~~FD~V~s~~  125 (263)
T PTZ00098         99 NKIEFEANDILKKDFPE-------------NTFDMIYSRD  125 (263)
T ss_pred             CceEEEECCcccCCCCC-------------CCeEEEEEhh
Confidence            67999999998766543             3689999854

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.28  E-value=2.5e-11  Score=108.19  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+  ++++++++|+.+. ++.           
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~-----------  187 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPG-----------  187 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCC-----------
Confidence            345799999999999999999874 3699999999999999999876543  5799999998642 111           


Q ss_pred             CCCCceEEEecCCCCCCH
Q psy17126        127 EGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss  144 (240)
                        .++|.||+||||.-..
T Consensus       188 --~~fD~Iv~NPPy~~~~  203 (284)
T TIGR03533       188 --RKYDLIVSNPPYVDAE  203 (284)
T ss_pred             --CCccEEEECCCCCCcc
Confidence              3589999999995443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.28  E-value=1.9e-11  Score=108.29  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             chhhhccCccccCCHH---------HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126         23 LRALKQLSQNFLFEPR---------LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~---------i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~   93 (240)
                      +.+.+.|.-.|..++.         -++.+++.+.+.+|++|||||||+|.+++.+|++...+|+||++|+++...++++
T Consensus        35 Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r  114 (283)
T COG2230          35 LDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR  114 (283)
T ss_pred             cCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH
Confidence            4466677777777664         3577888999999999999999999999999998667999999999999999997


Q ss_pred             HhcCC--CCeEEEEccccccc
Q psy17126         94 AQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        94 ~~~~~--~~v~vi~~D~~~~~  112 (240)
                      +...+  .+++++..|..+++
T Consensus       115 ~~~~gl~~~v~v~l~d~rd~~  135 (283)
T COG2230         115 IAARGLEDNVEVRLQDYRDFE  135 (283)
T ss_pred             HHHcCCCcccEEEeccccccc
Confidence            65544  68999999998865

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.28  E-value=2e-11  Score=91.83  Aligned_cols=87  Identities=16%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             EEEECCchhHHHHHHHhhC----CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         55 VCEVGPGPGSITRSILNRR----PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        55 VLEIG~GtG~lt~~La~~~----~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      |||+|||+|..+..++...    ..+++|+|+|+.|++.++++....+.+++++++|+.+++..+             ++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~-------------~~   67 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD-------------GK   67 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS-------------SS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC-------------CC
Confidence            7999999999999999874    279999999999999999876554468999999998865322             46


Q ss_pred             ceEEEe-cC-CCCCCHHHHHHHHHhc
Q psy17126        131 GIRIIG-NL-PFNVSTPLIIKWIQAI  154 (240)
Q Consensus       131 ~~~Vvs-Nl-PY~Iss~il~~ll~~~  154 (240)
                      +|.|++ +. ..+++.+.+.+++++.
T Consensus        68 ~D~v~~~~~~~~~~~~~~~~~ll~~~   93 (101)
T PF13649_consen   68 FDLVVCSGLSLHHLSPEELEALLRRI   93 (101)
T ss_dssp             EEEEEE-TTGGGGSSHHHHHHHHHHH
T ss_pred             eeEEEEcCCccCCCCHHHHHHHHHHH
Confidence            898888 44 3448888888887764

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.27  E-value=2.1e-11  Score=99.69  Aligned_cols=113  Identities=27%  Similarity=0.380  Sum_probs=90.2

Q ss_pred             hccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126         27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFH  104 (240)
Q Consensus        27 k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi  104 (240)
                      +.-|---..++.++++|++.+++..|.-|||+|+|||.+|..+++++  ...++++|.|++++..+.+..    +.++++
T Consensus        24 rtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii   99 (194)
T COG3963          24 RTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNII   99 (194)
T ss_pred             ceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCcccc
Confidence            33566666777899999999999999999999999999999999986  378999999999999998643    457899


Q ss_pred             Eccccccc--ccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        105 LGDVMSFT--MQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       105 ~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                      +||+..++  +.+.          .+..+|.|||.+| -+++...-..++++
T Consensus       100 ~gda~~l~~~l~e~----------~gq~~D~viS~lPll~~P~~~~iaile~  141 (194)
T COG3963         100 NGDAFDLRTTLGEH----------KGQFFDSVISGLPLLNFPMHRRIAILES  141 (194)
T ss_pred             ccchhhHHHHHhhc----------CCCeeeeEEeccccccCcHHHHHHHHHH
Confidence            99998865  3221          1246899999999 46776666666654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.27  E-value=4.8e-11  Score=100.78  Aligned_cols=97  Identities=13%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhh
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      +++.+...++.+|||+|||+|.++..|++++ .+|+|+|+|+.|++.++++....+ .+++++.+|+.+++++       
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------   93 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-------   93 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-------
Confidence            4444556677899999999999999999985 699999999999999988765433 5688899998776542       


Q ss_pred             cccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        122 RRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                             +++|.|+++..+ +++...+..++...
T Consensus        94 -------~~fD~I~~~~~~~~~~~~~~~~~l~~i  120 (197)
T PRK11207         94 -------GEYDFILSTVVLMFLEAKTIPGLIANM  120 (197)
T ss_pred             -------CCcCEEEEecchhhCCHHHHHHHHHHH
Confidence                   258999998774 44544455555543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.27  E-value=2e-11  Score=110.17  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             cCCHHHHHHHH----HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         34 LFEPRLTDKIV----RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        34 l~d~~i~~~iv----~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      -+++.+...+.    +++...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++++..+ .+++++++|+
T Consensus       152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~  230 (315)
T PRK03522        152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS  230 (315)
T ss_pred             ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence            44555555554    34443456899999999999999999975 799999999999999999876544 5799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      .++....            .+.+|.||.|||+.-..+.+.+++...
T Consensus       231 ~~~~~~~------------~~~~D~Vv~dPPr~G~~~~~~~~l~~~  264 (315)
T PRK03522        231 TQFATAQ------------GEVPDLVLVNPPRRGIGKELCDYLSQM  264 (315)
T ss_pred             HHHHHhc------------CCCCeEEEECCCCCCccHHHHHHHHHc
Confidence            7753210            135799999999876556666666654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.26  E-value=4.5e-11  Score=103.28  Aligned_cols=91  Identities=19%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      ++..+++.+. ..+.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++....+ .+++++++|+.+. ++. 
T Consensus        76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~-  152 (251)
T TIGR03534        76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LPG-  152 (251)
T ss_pred             HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-CcC-
Confidence            4555666554 345689999999999999999874 3599999999999999998876544 4699999999762 211 


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                                  +++|.|++|+||.-.+
T Consensus       153 ------------~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534       153 ------------GKFDLIVSNPPYIPEA  168 (251)
T ss_pred             ------------CceeEEEECCCCCchh
Confidence                        3689999999996443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.26  E-value=3.8e-11  Score=100.09  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ++-+.+..-.++.+.++++++++|||||||++|..++..+ .++|+|||.++++++..++|+++++ +|++++.||+.+.
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~   96 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA   96 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence            6778888889999999999999999999999999999544 3799999999999999999998887 8999999999875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.26  E-value=5.7e-11  Score=101.82  Aligned_cols=92  Identities=7%  Similarity=0.084  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      +....+.+++.+.+.++.+|||+|||+|.++..+++..  ..+|+|+|+++.|++.++++..... ++++++++|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  109 (231)
T TIGR02752        30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP  109 (231)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence            55666788888888889999999999999999999863  2699999999999999998765433 67999999998876


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++             +++|.|+++..+
T Consensus       110 ~~~-------------~~fD~V~~~~~l  124 (231)
T TIGR02752       110 FDD-------------NSFDYVTIGFGL  124 (231)
T ss_pred             CCC-------------CCccEEEEeccc
Confidence            432             367888887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.25  E-value=3.5e-11  Score=96.97  Aligned_cols=84  Identities=14%  Similarity=0.220  Sum_probs=65.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      +.+.+|||+|||+|.++..+++. + ..+++|||+++.|++.++++++..+ ++++++++|+.+++-.  +.        
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~--------   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LE--------   71 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SS--------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cC--------
Confidence            46789999999999999999953 2 4799999999999999999776554 5899999999986511  10        


Q ss_pred             CCCCceEEEecCCC-CCCHH
Q psy17126        127 EGLPGIRIIGNLPF-NVSTP  145 (240)
Q Consensus       127 ~~~~~~~VvsNlPY-~Iss~  145 (240)
                        ..+|+|+++.++ ++..+
T Consensus        72 --~~~D~I~~~~~l~~~~~~   89 (152)
T PF13847_consen   72 --EKFDIIISNGVLHHFPDP   89 (152)
T ss_dssp             --TTEEEEEEESTGGGTSHH
T ss_pred             --CCeeEEEEcCchhhccCH
Confidence              258999999874 45544

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.25  E-value=5.7e-11  Score=104.11  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             HHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +++.++..+.. ....+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...  +++++++|+.+.- ...
T Consensus        73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--~~~~~~~D~~~~l-~~~  149 (251)
T TIGR03704        73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--GGTVHEGDLYDAL-PTA  149 (251)
T ss_pred             HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCEEEEeechhhc-chh
Confidence            34444444332 234589999999999999998764 258999999999999999987653  3688999986531 111


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      .          .+++|.||+||||..++
T Consensus       150 ~----------~~~fDlVv~NPPy~~~~  167 (251)
T TIGR03704       150 L----------RGRVDILAANAPYVPTD  167 (251)
T ss_pred             c----------CCCEeEEEECCCCCCch
Confidence            1          13589999999996543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.25  E-value=2.6e-11  Score=116.13  Aligned_cols=80  Identities=15%  Similarity=0.100  Sum_probs=64.7

Q ss_pred             CCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      +.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+  ++++++++|+.+. +.             .
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~-------------~  204 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IE-------------K  204 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-Cc-------------C
Confidence            4689999999999999998764 3699999999999999999876543  5799999998642 11             1


Q ss_pred             CCceEEEecCCCCCCHH
Q psy17126        129 LPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       129 ~~~~~VvsNlPY~Iss~  145 (240)
                      .++|.||+||||-.++.
T Consensus       205 ~~fDlIvsNPPYi~~~~  221 (506)
T PRK01544        205 QKFDFIVSNPPYISHSE  221 (506)
T ss_pred             CCccEEEECCCCCCchh
Confidence            36899999999976543

>KOG3420|consensus

Probab=99.24  E-value=9.7e-12  Score=99.62  Aligned_cols=105  Identities=14%  Similarity=0.217  Sum_probs=87.0

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcC----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAG----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC   99 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~   99 (240)
                      +++-.+.| |.+.|.++..|+..+.    --+|..++|+|||+|.|+...+--....|+|+|+|++.++.+.+|++++.-
T Consensus        18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv   96 (185)
T KOG3420|consen   18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV   96 (185)
T ss_pred             ccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh
Confidence            45666777 9999999999988763    236899999999999999777665557999999999999999999887776


Q ss_pred             CeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        100 PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       100 ~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++.++++|+++..+..             +.+|.+|-|+||..
T Consensus        97 qidlLqcdildle~~~-------------g~fDtaviNppFGT  126 (185)
T KOG3420|consen   97 QIDLLQCDILDLELKG-------------GIFDTAVINPPFGT  126 (185)
T ss_pred             hhheeeeeccchhccC-------------CeEeeEEecCCCCc
Confidence            7889999998865432             46899999999964

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.24  E-value=5.8e-11  Score=99.22  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ++.+|||||||+|.++..++... ..+|+|||+|+.|++.++++.+..+ ++++++++|+.++...              
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~--------------  107 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHE--------------  107 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcccc--------------
Confidence            47899999999999999998764 3689999999999999988766554 5799999999875311              


Q ss_pred             CCceEEEecC
Q psy17126        129 LPGIRIIGNL  138 (240)
Q Consensus       129 ~~~~~VvsNl  138 (240)
                      +++|.|++|.
T Consensus       108 ~~fD~I~s~~  117 (181)
T TIGR00138       108 EQFDVITSRA  117 (181)
T ss_pred             CCccEEEehh
Confidence            3689999986

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02244 tocopherol O-methyltransferase

Probab=99.23  E-value=6.2e-11  Score=108.17  Aligned_cols=89  Identities=19%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCC-----CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         38 RLTDKIVRNAGT-----ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        38 ~i~~~iv~~~~~-----~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      .+++.+++.+++     .++++|||||||+|.++..++++...+|+|||+++.|++.++++....+  ++++++++|+.+
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            467778888877     6789999999999999999998754699999999999999988765433  579999999998


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +++++             +.+|+|+++.-
T Consensus       180 ~~~~~-------------~~FD~V~s~~~  195 (340)
T PLN02244        180 QPFED-------------GQFDLVWSMES  195 (340)
T ss_pred             CCCCC-------------CCccEEEECCc
Confidence            76543             46888888654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.23  E-value=8.1e-11  Score=99.21  Aligned_cols=97  Identities=10%  Similarity=0.077  Sum_probs=70.8

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+++.+...++.+|||+|||+|.++..+++++ .+|+|+|+|+.|++.+++++...+-++++..+|+...+++       
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-------   92 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-------   92 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-------
Confidence            45555566567899999999999999999985 6999999999999999887654333467777777654332       


Q ss_pred             cccccCCCCceEEEecCCCC-CCHHHHHHHHHh
Q psy17126        122 RRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQA  153 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~~  153 (240)
                             +++|.|+++.+++ ++.+.+..++..
T Consensus        93 -------~~fD~I~~~~~~~~~~~~~~~~~l~~  118 (195)
T TIGR00477        93 -------EDYDFIFSTVVFMFLQAGRVPEIIAN  118 (195)
T ss_pred             -------CCCCEEEEecccccCCHHHHHHHHHH
Confidence                   2579999998875 333344444443

Part of a tellurite-reducing operon tehA and tehB

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.23  E-value=1.4e-10  Score=98.62  Aligned_cols=93  Identities=16%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ++..+.+...+++.+.+.++.+|||||||+|.+|..++... .+|+++|+++.+++.+++++...+ .+++++++|+.+.
T Consensus        60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  138 (212)
T PRK00312         60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG  138 (212)
T ss_pred             eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence            56788999999999999899999999999999999888874 699999999999999998876554 5699999998652


Q ss_pred             cccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       +..            .+++|.|+.+.+
T Consensus       139 -~~~------------~~~fD~I~~~~~  153 (212)
T PRK00312        139 -WPA------------YAPFDRILVTAA  153 (212)
T ss_pred             -CCc------------CCCcCEEEEccC
Confidence             111            136788887754

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.22  E-value=1.1e-10  Score=102.87  Aligned_cols=91  Identities=10%  Similarity=0.084  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHh----cCCCCeEEEEcccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQ----ASPCPVHFHLGDVM  109 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~----~~~~~v~vi~~D~~  109 (240)
                      +..+...+++.+.+.++.+|||+|||||.++..+++.. + ++|+|+|+|+.|++.++++..    ....+++++++|+.
T Consensus        58 ~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~  137 (261)
T PLN02233         58 HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT  137 (261)
T ss_pred             hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence            34445555667778889999999999999999998863 2 599999999999999987542    11257999999999


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ++++++             +.+|.|+++.-
T Consensus       138 ~lp~~~-------------~sfD~V~~~~~  154 (261)
T PLN02233        138 DLPFDD-------------CYFDAITMGYG  154 (261)
T ss_pred             cCCCCC-------------CCEeEEEEecc
Confidence            887653             35788888654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.22  E-value=5.9e-11  Score=106.99  Aligned_cols=77  Identities=13%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+  ++++++++|+.+. ++.             .
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~-------------~  200 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPG-------------R  200 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCC-------------C
Confidence            689999999999999999875 3699999999999999999876543  5799999998652 111             3


Q ss_pred             CceEEEecCCCCCC
Q psy17126        130 PGIRIIGNLPFNVS  143 (240)
Q Consensus       130 ~~~~VvsNlPY~Is  143 (240)
                      ++|.||+||||--.
T Consensus       201 ~fDlIvsNPPyi~~  214 (307)
T PRK11805        201 RYDLIVSNPPYVDA  214 (307)
T ss_pred             CccEEEECCCCCCc
Confidence            58999999999543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.22  E-value=2.6e-10  Score=87.50  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTM  113 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~  113 (240)
                      .+.+...+++.+.+.++.+|||+|||+|.++..++++. ..+|+++|+++.+++.++++....+ .+++++.+|+.... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-   82 (124)
T TIGR02469         4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL-   82 (124)
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC-
Confidence            34566778888888788899999999999999999874 3699999999999999998776543 57899999987531 


Q ss_pred             cccchhhhcccccCCCCceEEEecCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      ...           ..++|.|+...+.
T Consensus        83 ~~~-----------~~~~D~v~~~~~~   98 (124)
T TIGR02469        83 EDS-----------LPEPDRVFIGGSG   98 (124)
T ss_pred             hhh-----------cCCCCEEEECCcc
Confidence            111           1357888876544

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.22  E-value=4.1e-11  Score=106.33  Aligned_cols=74  Identities=16%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      .++.+++.+++++|++|||||||+|.++..++++...+|+||.+|+...+.+++.+...+  +++++..+|+.+++
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~  125 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP  125 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence            466788889999999999999999999999999844699999999999999998877654  68999999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.20  E-value=6.5e-11  Score=106.15  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=79.2

Q ss_pred             HHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--------CCCeEEEEeCCcchHH
Q psy17126         17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--------RPARLVLIEKDPRFTP   88 (240)
Q Consensus        17 ~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--------~~~~V~avEid~~m~~   88 (240)
                      +++.+.-..+++.|| |.++..+++.|++.+...++.+|+|.+||+|.+...+.+.        ....++|+|+++.++.
T Consensus        13 ~l~~~~~~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~   91 (311)
T PF02384_consen   13 FLKKFAKESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA   91 (311)
T ss_dssp             HHHHHHHCTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred             HHHHHHHHhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence            444544345778899 7899999999999999888899999999999998887762        2468999999999998


Q ss_pred             HHHHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         89 CLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        89 ~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .++-++.-.+   .+..+.++|.+..+...           ....+|.||+||||...
T Consensus        92 la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-----------~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   92 LAKLNLLLHGIDNSNINIIQGDSLENDKFI-----------KNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHHHHHHHTTHHCBGCEEEES-TTTSHSCT-----------ST--EEEEEEE--CTCE
T ss_pred             HHHhhhhhhccccccccccccccccccccc-----------cccccccccCCCCcccc
Confidence            8876543222   34568899987654221           12468999999999876

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.19  E-value=1e-10  Score=97.61  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-Ce---------EEEEeCCcchHHHHHHHHhcCC
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-AR---------LVLIEKDPRFTPCLDMLAQASP   98 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~---------V~avEid~~m~~~l~~~~~~~~   98 (240)
                      +...--.++.++..|+..+++++++.|||.-||+|++....+.... ..         ++|+|+|+++++.+++|+...+
T Consensus         6 ~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag   85 (179)
T PF01170_consen    6 FFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG   85 (179)
T ss_dssp             SSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence            4445678899999999999999999999999999999988776532 23         8899999999999999987654


Q ss_pred             --CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126         99 --CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus        99 --~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                        ..+.+.++|+.++++..             +.+|.||+||||.....
T Consensus        86 ~~~~i~~~~~D~~~l~~~~-------------~~~d~IvtnPPyG~r~~  121 (179)
T PF01170_consen   86 VEDYIDFIQWDARELPLPD-------------GSVDAIVTNPPYGRRLG  121 (179)
T ss_dssp             -CGGEEEEE--GGGGGGTT-------------SBSCEEEEE--STTSHC
T ss_pred             cCCceEEEecchhhccccc-------------CCCCEEEECcchhhhcc
Confidence              56899999999987322             35799999999987543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.18  E-value=3.9e-10  Score=94.02  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      =++.+.+...+++.+.+.++.+|||||||+|.++..++++.+ .+|+++|+++.+++.++++....+ .+++++++|+..
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~   92 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI   92 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence            355667777777888888899999999999999999998753 699999999999999998776543 579999998742


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       .+.              ..+|.|+++-.
T Consensus        93 -~~~--------------~~~D~v~~~~~  106 (187)
T PRK08287         93 -ELP--------------GKADAIFIGGS  106 (187)
T ss_pred             -hcC--------------cCCCEEEECCC
Confidence             111              25788887643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=2.8e-10  Score=107.82  Aligned_cols=102  Identities=19%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             hhhccCccccCCHHH--HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         25 ALKQLSQNFLFEPRL--TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        25 ~~k~~gQ~fl~d~~i--~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      -+.-||..|.+.+.+  .+.+++.+.+.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++......+++
T Consensus       238 ~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~  317 (475)
T PLN02336        238 YERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVE  317 (475)
T ss_pred             HHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceE
Confidence            445588888888775  567788888888899999999999999999986546999999999999999887654446799


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ++++|+.+.++++             +++|.|+++--
T Consensus       318 ~~~~d~~~~~~~~-------------~~fD~I~s~~~  341 (475)
T PLN02336        318 FEVADCTKKTYPD-------------NSFDVIYSRDT  341 (475)
T ss_pred             EEEcCcccCCCCC-------------CCEEEEEECCc
Confidence            9999998866532             35788888643

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.17  E-value=1.8e-10  Score=96.82  Aligned_cols=75  Identities=17%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++.+..+ ++++++++|+.+++. .            
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~------------  110 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E------------  110 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C------------
Confidence            458899999999999999998753 4799999999999999998876654 469999999988643 1            


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                       +++|.|++|-
T Consensus       111 -~~fDlV~~~~  120 (187)
T PRK00107        111 -EKFDVVTSRA  120 (187)
T ss_pred             -CCccEEEEcc
Confidence             3689999984

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.17  E-value=2.7e-10  Score=104.18  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ..+++.+......+|||+|||+|.++..++++.+ .+|+++|+|+.|++.++++.+..+-..+++.+|+... ..     
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~~-----  259 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-IK-----  259 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-cC-----
Confidence            4455556544556899999999999999998754 5899999999999999988765443457788887541 11     


Q ss_pred             hhcccccCCCCceEEEecCCCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                               +++|.||+|+||+-
T Consensus       260 ---------~~fDlIvsNPPFH~  273 (342)
T PRK09489        260 ---------GRFDMIISNPPFHD  273 (342)
T ss_pred             ---------CCccEEEECCCccC
Confidence                     36899999999863

>PRK14968 putative methyltransferase; Provisional

Probab=99.15  E-value=3.3e-10  Score=93.44  Aligned_cols=90  Identities=20%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CC--eEEEEcccccccccccch
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CP--VHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~--v~vi~~D~~~~~~~~~~~  118 (240)
                      .+++.+...++.+|||+|||+|.++..++.+ ..+|+|+|+++.+++.++++....+ .+  +.++++|+.+. +.+   
T Consensus        14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~---   88 (188)
T PRK14968         14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG---   88 (188)
T ss_pred             HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc---
Confidence            3444444467889999999999999999998 5799999999999999988765433 22  88999998652 111   


Q ss_pred             hhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                                ..+|.|++|+||....+.
T Consensus        89 ----------~~~d~vi~n~p~~~~~~~  106 (188)
T PRK14968         89 ----------DKFDVILFNPPYLPTEEE  106 (188)
T ss_pred             ----------cCceEEEECCCcCCCCch
Confidence                      258999999999875543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.15  E-value=9.6e-11  Score=112.56  Aligned_cols=108  Identities=15%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             hccCccccCCHHHHHHHHHHcCCC-------CCCEEEEECCchhHHHHHHHhhCC---------CeEEEEeCCcchHHHH
Q psy17126         27 KQLSQNFLFEPRLTDKIVRNAGTI-------TGNEVCEVGPGPGSITRSILNRRP---------ARLVLIEKDPRFTPCL   90 (240)
Q Consensus        27 k~~gQ~fl~d~~i~~~iv~~~~~~-------~~~~VLEIG~GtG~lt~~La~~~~---------~~V~avEid~~m~~~l   90 (240)
                      |++|| |.+++.+++.|++.+...       ...+|||.|||+|.+...++.+..         ..++|+|+|+..+..+
T Consensus         1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a   79 (524)
T TIGR02987         1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA   79 (524)
T ss_pred             CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence            57899 889999999999876321       345899999999999998886531         4789999999999999


Q ss_pred             HHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         91 DMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        91 ~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +.++.... ..+.+.++|.+...+... ..       ..+.||+||+||||.-.
T Consensus        80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-~~-------~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        80 KKLLGEFALLEINVINFNSLSYVLLNI-ES-------YLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHHHhhcCCCCceeeeccccccccccc-cc-------ccCcccEEEeCCCcccc
Confidence            88765543 346777787765332110 00       11468999999999754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.15  E-value=1.7e-10  Score=106.54  Aligned_cols=108  Identities=15%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             ccCCHHHHHHHHHH----cCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126         33 FLFEPRLTDKIVRN----AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD  107 (240)
Q Consensus        33 fl~d~~i~~~iv~~----~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D  107 (240)
                      |-++..+.+.+.+.    +...++.+|||+|||+|.++..++..+ .+|+|||+++.+++.++++++..+ .+++++++|
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d  289 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD  289 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            55667777666543    333456899999999999999999875 799999999999999999876554 589999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      +.++.. ..           ..++|+||.||||.-..+.+.+.+..
T Consensus       290 ~~~~~~-~~-----------~~~~D~vi~DPPr~G~~~~~l~~l~~  323 (374)
T TIGR02085       290 SAKFAT-AQ-----------MSAPELVLVNPPRRGIGKELCDYLSQ  323 (374)
T ss_pred             HHHHHH-hc-----------CCCCCEEEECCCCCCCcHHHHHHHHh
Confidence            976431 11           02479999999997545555455544

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.15  E-value=3e-10  Score=101.82  Aligned_cols=86  Identities=15%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ..++++|||+|||||.|++..++.++.+|+|+|+|+..++.+++|+...+  .++.+.  ...  +...           
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~--~~~~-----------  223 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE--DLVE-----------  223 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS--CTCC-----------
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec--cccc-----------
Confidence            35788999999999999999999987899999999999999999876543  445442  111  1111           


Q ss_pred             CCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                        .++|+|++|    |...+|..++.+..
T Consensus       224 --~~~dlvvAN----I~~~vL~~l~~~~~  246 (295)
T PF06325_consen  224 --GKFDLVVAN----ILADVLLELAPDIA  246 (295)
T ss_dssp             --S-EEEEEEE----S-HHHHHHHHHHCH
T ss_pred             --ccCCEEEEC----CCHHHHHHHHHHHH
Confidence              368999999    66667777777654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.12  E-value=6.1e-10  Score=95.05  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=72.4

Q ss_pred             HHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         38 RLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        38 ~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      .+...+++.+.  ..++.+|||||||+|.++..++..+ .+|+|+|+|+.|+..++++.....  .+++++++|+.+.+ 
T Consensus        40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-  117 (219)
T TIGR02021        40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-  117 (219)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence            34556776665  5678999999999999999999874 699999999999999998765433  47999999998754 


Q ss_pred             cccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHH
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQ  152 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~  152 (240)
                                     +++|.|+++-. ++.+.+.+.+.+.
T Consensus       118 ---------------~~fD~ii~~~~l~~~~~~~~~~~l~  142 (219)
T TIGR02021       118 ---------------GEFDIVVCMDVLIHYPASDMAKALG  142 (219)
T ss_pred             ---------------CCcCEEEEhhHHHhCCHHHHHHHHH
Confidence                           14677776533 4444443434433

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.12  E-value=1.4e-10  Score=101.30  Aligned_cols=84  Identities=20%  Similarity=0.329  Sum_probs=68.1

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      .....+++.+...++.+|||||||+|.++..++.+. ..+|+|+|+++.|++.+++      .+++++++|+.++. .. 
T Consensus        16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------~~~~~~~~d~~~~~-~~-   87 (255)
T PRK14103         16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------RGVDARTGDVRDWK-PK-   87 (255)
T ss_pred             CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------cCCcEEEcChhhCC-CC-
Confidence            345677888888888999999999999999999874 3699999999999998864      25889999987652 11 


Q ss_pred             chhhhcccccCCCCceEEEecCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                                  +++|.|++|..+.
T Consensus        88 ------------~~fD~v~~~~~l~  100 (255)
T PRK14103         88 ------------PDTDVVVSNAALQ  100 (255)
T ss_pred             ------------CCceEEEEehhhh
Confidence                        3689999988753

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=4.4e-10  Score=101.95  Aligned_cols=80  Identities=19%  Similarity=0.113  Sum_probs=69.1

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      .+..++.+...+++.+.++++++|||||||+|.++..+++...  ++|+++|+++.|++.+++++...+ .+++++++|+
T Consensus        61 ~~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~  140 (322)
T PRK13943         61 STSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG  140 (322)
T ss_pred             ccCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence            3667899999999999998999999999999999999998642  479999999999999998776544 6799999998


Q ss_pred             ccc
Q psy17126        109 MSF  111 (240)
Q Consensus       109 ~~~  111 (240)
                      .+.
T Consensus       141 ~~~  143 (322)
T PRK13943        141 YYG  143 (322)
T ss_pred             hhc
Confidence            764

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.11  E-value=2.7e-10  Score=106.93  Aligned_cols=104  Identities=17%  Similarity=0.181  Sum_probs=76.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      +.+.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+++++...+ .|++++++|+.+. ++.+.
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-l~~~~  357 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-LPKQP  357 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-HHHHH
Confidence            3445556666677889999999999999999987 4799999999999999999876544 6899999999763 22210


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                             + ....+|.|+.++|+.-..+.+.+.+.
T Consensus       358 -------~-~~~~~D~vi~dPPr~G~~~~~l~~l~  384 (431)
T TIGR00479       358 -------W-AGQIPDVLLLDPPRKGCAAEVLRTII  384 (431)
T ss_pred             -------h-cCCCCCEEEECcCCCCCCHHHHHHHH
Confidence                   0 01357999999998642333334443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.11  E-value=3e-10  Score=105.73  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=76.0

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~  109 (240)
                      |..|....+..+..+  .++.+|||+|||||.++..++..++.+|++||+|+.+++.+++++...+   .+++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            555555555555554  3578999999999999988776655699999999999999999876543   37899999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                      ++ +..+..        .+.+||.||.||||...+.
T Consensus       282 ~~-l~~~~~--------~~~~fDlVilDPP~f~~~k  308 (396)
T PRK15128        282 KL-LRTYRD--------RGEKFDVIVMDPPKFVENK  308 (396)
T ss_pred             HH-HHHHHh--------cCCCCCEEEECCCCCCCCh
Confidence            64 112110        1146899999999977654

>KOG2904|consensus

Probab=99.11  E-value=3.1e-10  Score=99.47  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         39 LTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        39 i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      +++.+++.+..   ..+..+||+|||+|+++..++... ..+|+|||.++..+..+.+|++.+.  +++.+++-++..--
T Consensus       133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~  212 (328)
T KOG2904|consen  133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA  212 (328)
T ss_pred             HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence            56666665542   345689999999999999999864 3799999999999999999987654  78888866554321


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                      +...-.        ..++.|.+|||||| |.+..
T Consensus       213 ~~~~~l--------~~~~~dllvsNPPY-I~~dD  237 (328)
T KOG2904|consen  213 SDEHPL--------LEGKIDLLVSNPPY-IRKDD  237 (328)
T ss_pred             cccccc--------ccCceeEEecCCCc-ccccc
Confidence            111100        01578999999999 44443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.11  E-value=2.3e-10  Score=99.78  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      ......++..+.+.++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++.    .++.++.+|+..+... 
T Consensus        17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~~~-   91 (258)
T PRK01683         17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQPP-   91 (258)
T ss_pred             hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccCCC-
Confidence            3456778888888889999999999999999999874 369999999999999998643    4688999998764311 


Q ss_pred             cchhhhcccccCCCCceEEEecCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                   .++|.|++|..+
T Consensus        92 -------------~~fD~v~~~~~l  103 (258)
T PRK01683         92 -------------QALDLIFANASL  103 (258)
T ss_pred             -------------CCccEEEEccCh
Confidence                         357999999775

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=3.1e-10  Score=116.01  Aligned_cols=106  Identities=16%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             hccCccccCCHHH------HHHHHHHcCCC-----CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHH
Q psy17126         27 KQLSQNFLFEPRL------TDKIVRNAGTI-----TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLA   94 (240)
Q Consensus        27 k~~gQ~fl~d~~i------~~~iv~~~~~~-----~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~   94 (240)
                      ..||-.|.++|.+      ...+++.+...     ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++|+
T Consensus        83 ~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na  162 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL  162 (1082)
T ss_pred             EecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            3455556555543      34445443221     246899999999999999998753 69999999999999999987


Q ss_pred             hcCC-----------------CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         95 QASP-----------------CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        95 ~~~~-----------------~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ....                 ++++++++|+.+.- ...           ..++|+|||||||-.++
T Consensus       163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~-----------~~~fDlIVSNPPYI~~~  217 (1082)
T PLN02672        163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-RDN-----------NIELDRIVGCIPQILNP  217 (1082)
T ss_pred             HHcCcccccccccccccccccccEEEEECchhhhc-ccc-----------CCceEEEEECCCcCCCc
Confidence            6421                 46999999997532 110           12589999999994433

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.10  E-value=4.6e-10  Score=94.35  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      ++.+.+...+++.+.+.++.+|||+|||+|.+|..++... ..+|+|+|+|+.|++.++++++..+ .+++++++|+.+
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            5556677778888888889999999999999999998653 3699999999999999999876554 579999999865

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.09  E-value=8.4e-10  Score=96.24  Aligned_cols=78  Identities=18%  Similarity=0.313  Sum_probs=63.0

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      +.++.+|||||||+|.++..+++.   ...+|+|+|+|+.|++.++++....+  .+++++++|+.+++++         
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~---------  124 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE---------  124 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC---------
Confidence            347789999999999999998873   23699999999999999999876543  5799999999886542         


Q ss_pred             cccCCCCceEEEecCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~  141 (240)
                            .+|.|++|+...
T Consensus       125 ------~~D~vv~~~~l~  136 (247)
T PRK15451        125 ------NASMVVLNFTLQ  136 (247)
T ss_pred             ------CCCEEehhhHHH
Confidence                  357889887753

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=6.1e-10  Score=104.58  Aligned_cols=100  Identities=19%  Similarity=0.214  Sum_probs=78.5

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      +.++..-...++..+++.++++|||+|||+|..|..+++... .+|+|+|+++.++..++++++..+.+++++++|+.+.
T Consensus       226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~  305 (427)
T PRK10901        226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP  305 (427)
T ss_pred             EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence            334444455666778888999999999999999999998753 5999999999999999998877665578999999864


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +  ..+.         ..++|.|+.|+|+..+
T Consensus       306 ~--~~~~---------~~~fD~Vl~D~Pcs~~  326 (427)
T PRK10901        306 A--QWWD---------GQPFDRILLDAPCSAT  326 (427)
T ss_pred             h--hhcc---------cCCCCEEEECCCCCcc
Confidence            2  1111         1468999999998743

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.08  E-value=5.2e-10  Score=97.82  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=70.1

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      +..+++.+. .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....+  ++++++++|+.++..  ..
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~--~~  109 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ--HL  109 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh--hc
Confidence            345666665 456799999999999999999985 799999999999999998775543  579999999987531  11


Q ss_pred             hhhhcccccCCCCceEEEecCCC-CCCHH
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF-NVSTP  145 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY-~Iss~  145 (240)
                                .+.+|.|+++..+ +++.|
T Consensus       110 ----------~~~fD~V~~~~vl~~~~~~  128 (255)
T PRK11036        110 ----------ETPVDLILFHAVLEWVADP  128 (255)
T ss_pred             ----------CCCCCEEEehhHHHhhCCH
Confidence                      1367888887663 34433

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.07  E-value=1.2e-09  Score=92.90  Aligned_cols=88  Identities=6%  Similarity=-0.039  Sum_probs=66.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      .++.+|||||||+|.++..++... ..+++|||+|+.|++.++++.    .+++++++|+.+ ++++             
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~-------------  103 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKD-------------  103 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCC-------------
Confidence            467789999999999999998863 479999999999999998643    357888999877 4322             


Q ss_pred             CCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        129 LPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       129 ~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +++|.|++|-- ++++...+.+.+....
T Consensus       104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~  131 (204)
T TIGR03587       104 NFFDLVLTKGVLIHINPDNLPTAYRELY  131 (204)
T ss_pred             CCEEEEEECChhhhCCHHHHHHHHHHHH
Confidence            46899998876 3565444555555443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK05785 hypothetical protein; Provisional

Probab=99.07  E-value=4.3e-10  Score=97.06  Aligned_cols=86  Identities=9%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         35 FEPRLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        35 ~d~~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .+..+...+++.+.  ..++.+|||||||||.++..+++....+|+|+|+|++|++.++++       ...+++|+.+++
T Consensus        33 ~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp  105 (226)
T PRK05785         33 QDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALP  105 (226)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCC
Confidence            34445445554432  134689999999999999999987436999999999999998752       235789999887


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++             +++|.|+++.-.
T Consensus       106 ~~d-------------~sfD~v~~~~~l  120 (226)
T PRK05785        106 FRD-------------KSFDVVMSSFAL  120 (226)
T ss_pred             CCC-------------CCEEEEEecChh
Confidence            654             468999998754

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.07  E-value=7.2e-10  Score=93.25  Aligned_cols=102  Identities=14%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             cccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         32 NFLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ...++..+.+.+...+. ...+.+|||++||+|.++..++++++.+|++||.|+.+++.++++++..+  ++++++++|+
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~  108 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA  108 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence            35666667777766653 23578999999999999999999987799999999999999999876543  4789999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .+. +..+..        ....+|+|+..|||.-
T Consensus       109 ~~~-l~~~~~--------~~~~~dvv~~DPPy~~  133 (189)
T TIGR00095       109 LRA-LKFLAK--------KPTFDNVIYLDPPFFN  133 (189)
T ss_pred             HHH-HHHhhc--------cCCCceEEEECcCCCC
Confidence            653 111110        0123688999999964

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.06  E-value=2.3e-09  Score=90.34  Aligned_cols=93  Identities=13%  Similarity=0.087  Sum_probs=72.5

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      ++.+.+....+..+.+.++.+|||+|||+|.++..++...  ..+|+++|+++.|++.++++....+  .+++++.+|+.
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~  102 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP  102 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence            4445666666788888999999999999999999988752  3699999999999999998876654  67999999987


Q ss_pred             cccccccchhhhcccccCCCCceEEEecC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      +.- +..           .+.+|.|+++.
T Consensus       103 ~~l-~~~-----------~~~~D~V~~~~  119 (198)
T PRK00377        103 EIL-FTI-----------NEKFDRIFIGG  119 (198)
T ss_pred             hhH-hhc-----------CCCCCEEEECC
Confidence            531 111           13578888864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.06  E-value=7.3e-10  Score=100.36  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC---CCCeEEEE-cccccccccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHL-GDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~---~~~v~vi~-~D~~~~~~~~~~~~~~~~~~  125 (240)
                      .+.+|||||||+|.+...++.+. ..+++|+|+|+.+++.++++++..   .+++++++ .|...+ +..+..       
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~-------  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIH-------  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccc-------
Confidence            46899999999999888887653 369999999999999999988754   25677764 333221 111100       


Q ss_pred             cCCCCceEEEecCCCCCCHHH
Q psy17126        126 SEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~Iss~i  146 (240)
                       ..+.+|.|++||||+.+...
T Consensus       186 -~~~~fDlivcNPPf~~s~~e  205 (321)
T PRK11727        186 -KNERFDATLCNPPFHASAAE  205 (321)
T ss_pred             -cCCceEEEEeCCCCcCcchh
Confidence             11468999999999987654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.05  E-value=1.4e-09  Score=96.92  Aligned_cols=90  Identities=13%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+-++++..+|+...+++              +
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~--------------~  183 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ--------------E  183 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc--------------C
Confidence            345699999999999999999985 7999999999999999987765445788888888765431              3


Q ss_pred             CceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        130 PGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       130 ~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                      .+|.|+++..+ .+..+.+..++...
T Consensus       184 ~fD~I~~~~vl~~l~~~~~~~~l~~~  209 (287)
T PRK12335        184 EYDFILSTVVLMFLNRERIPAIIKNM  209 (287)
T ss_pred             CccEEEEcchhhhCCHHHHHHHHHHH
Confidence            68999998764 34444445555543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.2e-09  Score=97.31  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.+++.+....+.+|||+|||.|.++..+++..+ .+|+-+|+|...++.+++++.... .+..++.+|..+- ..    
T Consensus       148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~----  222 (300)
T COG2813         148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE----  222 (300)
T ss_pred             HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc----
Confidence            4577777777677999999999999999999864 799999999999999999886543 3335677776431 11    


Q ss_pred             hhhcccccCCCCceEEEecCCCCCCHHHHH----HHHHhcc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLII----KWIQAIS  155 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~il~----~ll~~~~  155 (240)
                                ++||.||+||||.-......    +++....
T Consensus       223 ----------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~  253 (300)
T COG2813         223 ----------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAA  253 (300)
T ss_pred             ----------ccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence                      26899999999987666666    5555443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.04  E-value=5.5e-10  Score=94.68  Aligned_cols=78  Identities=19%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc-ccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV-MSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~-~~~~~~~~~~~~~~~~~~~  127 (240)
                      ++.+|||||||+|.++..+++..+ .+|+|||+++.|++.++++....+ .+++++++|+ ..++  ..++.        
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~--~~~~~--------  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL--DMFPD--------  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH--HHcCc--------
Confidence            678999999999999999998743 589999999999999998775544 6799999999 5443  11111        


Q ss_pred             CCCceEEEecCC
Q psy17126        128 GLPGIRIIGNLP  139 (240)
Q Consensus       128 ~~~~~~VvsNlP  139 (240)
                       +.+|.|++|.|
T Consensus       110 -~~~D~V~~~~~  120 (202)
T PRK00121        110 -GSLDRIYLNFP  120 (202)
T ss_pred             -cccceEEEECC
Confidence             35788998865

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.03  E-value=1.2e-09  Score=96.32  Aligned_cols=86  Identities=16%  Similarity=-0.024  Sum_probs=70.3

Q ss_pred             HHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126         44 VRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +..+.+.++.+|||+|||+|..|..++...  .+.|+|+|+++.+++.++++++..+ .+++++++|+..++...     
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~-----  138 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV-----  138 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc-----
Confidence            345677889999999999999999998863  2689999999999999999887665 67999999987643211     


Q ss_pred             hcccccCCCCceEEEecCCCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                              +.+|+|+.++|+.-
T Consensus       139 --------~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       139 --------PKFDAILLDAPCSG  152 (264)
T ss_pred             --------cCCCEEEEcCCCCC
Confidence                    35899999999763

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.03  E-value=1.2e-09  Score=79.42  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             EEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEE
Q psy17126         56 CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII  135 (240)
Q Consensus        56 LEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vv  135 (240)
                      ||+|||+|..+..++++...+|+++|+++.+++.++++...  .++.++++|+.++++++             +.+|.|+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~-------------~sfD~v~   65 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPD-------------NSFDVVF   65 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-T-------------T-EEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCcccc-------------ccccccc
Confidence            79999999999999998457999999999999999986542  56779999999988764             4689988


Q ss_pred             ecCCC
Q psy17126        136 GNLPF  140 (240)
Q Consensus       136 sNlPY  140 (240)
                      ++--+
T Consensus        66 ~~~~~   70 (95)
T PF08241_consen   66 SNSVL   70 (95)
T ss_dssp             EESHG
T ss_pred             cccce
Confidence            87654

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK04266 fibrillarin; Provisional

Probab=99.02  E-value=2.8e-09  Score=92.15  Aligned_cols=85  Identities=15%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             HHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcc
Q psy17126         45 RNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      +.+++.++.+|||+|||+|.++..++... .++|+|+|+++.|++.+.+++... .|+.++.+|+.......-+.     
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-----  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-----  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-----
Confidence            36788899999999999999999999874 368999999999999887765543 68999999987521000011     


Q ss_pred             cccCCCCceEEEecCCC
Q psy17126        124 DWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY  140 (240)
                           ..+|.|+++++.
T Consensus       140 -----~~~D~i~~d~~~  151 (226)
T PRK04266        140 -----EKVDVIYQDVAQ  151 (226)
T ss_pred             -----ccCCEEEECCCC
Confidence                 247999988763

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.3e-09  Score=95.80  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE----EEEcccccccccccchhhhcccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH----FHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~----vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      .++.+|||+|||||.|++..++.++.+|+|+|+|+-.++.+++|+...  ++.    .-..+.....             
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~~~~~~~~~~-------------  225 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--GVELLVQAKGFLLLEVP-------------  225 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc--CCchhhhcccccchhhc-------------
Confidence            488999999999999999999998889999999999999999987653  233    1111221111             


Q ss_pred             cCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                       ..+++|+||+|+   ++.+ +.++..+..
T Consensus       226 -~~~~~DvIVANI---LA~v-l~~La~~~~  250 (300)
T COG2264         226 -ENGPFDVIVANI---LAEV-LVELAPDIK  250 (300)
T ss_pred             -ccCcccEEEehh---hHHH-HHHHHHHHH
Confidence             124789999996   4444 446666544

>PRK08317 hypothetical protein; Provisional

Probab=99.01  E-value=3.1e-09  Score=90.22  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +.+.+++.+.+.++.+|||+|||+|.++..++...  ..+|+|+|+++.+++.++++......+++++.+|+...++.. 
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-   85 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD-   85 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC-
Confidence            44567777888889999999999999999999874  268999999999999998864333478999999998765432 


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                  +.+|.|+++.-+
T Consensus        86 ------------~~~D~v~~~~~~   97 (241)
T PRK08317         86 ------------GSFDAVRSDRVL   97 (241)
T ss_pred             ------------CCceEEEEechh
Confidence                        357777776543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.00  E-value=3.8e-09  Score=89.13  Aligned_cols=99  Identities=12%  Similarity=0.171  Sum_probs=71.5

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+++.+...+..++||+|||.|.-+..||++| -.|+|+|+|+..++.+++.++..+-.++..+.|+.+.+++.      
T Consensus        21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~------   93 (192)
T PF03848_consen   21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE------   93 (192)
T ss_dssp             HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT------
T ss_pred             HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC------
Confidence            35555666677899999999999999999996 69999999999999998877655556889999998766532      


Q ss_pred             cccccCCCCceEEEecC-CCCCCHHHHHHHHHhcc
Q psy17126        122 RRDWSEGLPGIRIIGNL-PFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNl-PY~Iss~il~~ll~~~~  155 (240)
                              .+|.|++.. ..++..+.+.++++.+.
T Consensus        94 --------~yD~I~st~v~~fL~~~~~~~i~~~m~  120 (192)
T PF03848_consen   94 --------EYDFIVSTVVFMFLQRELRPQIIENMK  120 (192)
T ss_dssp             --------TEEEEEEESSGGGS-GGGHHHHHHHHH
T ss_pred             --------CcCEEEEEEEeccCCHHHHHHHHHHHH
Confidence                    468888753 34566666666666654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.00  E-value=1e-09  Score=92.34  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ...+|||||||+|.++..++.+.+ ..|+|||+++.|++.+++++...+ .|++++++|+.++. ...++         .
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~---------~   85 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFP---------D   85 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCC---------C
Confidence            456899999999999999998753 689999999999999988765443 68999999998753 11111         1


Q ss_pred             CCceEEEecCC
Q psy17126        129 LPGIRIIGNLP  139 (240)
Q Consensus       129 ~~~~~VvsNlP  139 (240)
                      +.++.|+.|.|
T Consensus        86 ~~~d~v~~~~p   96 (194)
T TIGR00091        86 GSLSKVFLNFP   96 (194)
T ss_pred             CceeEEEEECC
Confidence            35789999975

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.99  E-value=4.8e-09  Score=89.55  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             HHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccc
Q psy17126         40 TDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~  114 (240)
                      .+.+++.+.   ..++.+|||||||+|.++..+++.+ .+|+|+|+++.|+..++++....+  ++++++.+|+...   
T Consensus        49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---  124 (230)
T PRK07580         49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL---  124 (230)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc---
Confidence            444555543   3567899999999999999999875 589999999999999998765433  4789999994321   


Q ss_pred             ccchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHH
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQ  152 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~  152 (240)
                      .             +.+|.|+++-.+ ..+.+-+..++.
T Consensus       125 ~-------------~~fD~v~~~~~l~~~~~~~~~~~l~  150 (230)
T PRK07580        125 L-------------GRFDTVVCLDVLIHYPQEDAARMLA  150 (230)
T ss_pred             c-------------CCcCEEEEcchhhcCCHHHHHHHHH
Confidence            1             357888876554 445555444444

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.99  E-value=4.4e-09  Score=93.89  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.++++....+  .++.++.+|....  .             
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--~-------------  222 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--I-------------  222 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--c-------------
Confidence            4679999999999999999988766799999999999999999876433  4566666663221  0             


Q ss_pred             CCCceEEEecCC
Q psy17126        128 GLPGIRIIGNLP  139 (240)
Q Consensus       128 ~~~~~~VvsNlP  139 (240)
                      .+++|.|++|+.
T Consensus       223 ~~~fDlVvan~~  234 (288)
T TIGR00406       223 EGKADVIVANIL  234 (288)
T ss_pred             CCCceEEEEecC
Confidence            136899999964

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.99  E-value=7.1e-10  Score=94.35  Aligned_cols=96  Identities=17%  Similarity=0.246  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +..++..+++....+|.|+|||+|..|..|+++.+ +.|+|+|.|++|++.++++    ..++++..+|+..+..+    
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----lp~~~f~~aDl~~w~p~----   90 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----LPDATFEEADLRTWKPE----   90 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----CCCCceecccHhhcCCC----
Confidence            45577788888889999999999999999999964 7999999999999998753    26799999999875432    


Q ss_pred             hhhcccccCCCCceEEEecCCCCC---CHHHHHHHHHh
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNV---STPLIIKWIQA  153 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~I---ss~il~~ll~~  153 (240)
                                .+.|++++|--++-   ...++.+|+.+
T Consensus        91 ----------~~~dllfaNAvlqWlpdH~~ll~rL~~~  118 (257)
T COG4106          91 ----------QPTDLLFANAVLQWLPDHPELLPRLVSQ  118 (257)
T ss_pred             ----------CccchhhhhhhhhhccccHHHHHHHHHh
Confidence                      35688888854321   23445555554

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=2e-09  Score=101.33  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      |.++......++..+++.++.+|||+|||+|..|..++...  .++|+|+|+++.+++.++++++..+ .+++++++|+.
T Consensus       219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~  298 (431)
T PRK14903        219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE  298 (431)
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence            34444444555556788899999999999999999999863  4799999999999999999887765 56899999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +++  ....          +.||.|+.+.|+.-
T Consensus       299 ~l~--~~~~----------~~fD~Vl~DaPCsg  319 (431)
T PRK14903        299 RLT--EYVQ----------DTFDRILVDAPCTS  319 (431)
T ss_pred             hhh--hhhh----------ccCCEEEECCCCCC
Confidence            753  1111          36899999999853

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.98  E-value=1.4e-09  Score=92.68  Aligned_cols=99  Identities=18%  Similarity=0.298  Sum_probs=72.8

Q ss_pred             hhccCccccCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCe
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPV  101 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v  101 (240)
                      .+.|.+....+..++..+++.+..   ....+|||||||+|.++..++..++ .+++++|+++.++..++++..   .++
T Consensus         6 ~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~   82 (240)
T TIGR02072         6 AKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENV   82 (240)
T ss_pred             hhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCC
Confidence            344444444455666666666543   3347899999999999999998763 579999999999998886543   478


Q ss_pred             EEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        102 HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       102 ~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++.+|+.+.++.+             +++|+|+++...
T Consensus        83 ~~~~~d~~~~~~~~-------------~~fD~vi~~~~l  108 (240)
T TIGR02072        83 QFICGDAEKLPLED-------------SSFDLIVSNLAL  108 (240)
T ss_pred             eEEecchhhCCCCC-------------CceeEEEEhhhh
Confidence            99999998766432             357888888664

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=98.98  E-value=3.7e-09  Score=91.07  Aligned_cols=92  Identities=11%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhh----C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNR----R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~----~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      ...++.+|||||||+|.++..|+..    + ..+|+|+|+++.|++.++++..  ..++++..+++..++..+       
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~-------  127 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEG-------  127 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccC-------
Confidence            3356789999999999999998753    2 2489999999999999987543  245777777665554321       


Q ss_pred             ccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        123 RDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                            +.+|.|++|.-+ ++..+.+..++..+
T Consensus       128 ------~~fD~V~~~~~lhh~~d~~~~~~l~~~  154 (232)
T PRK06202        128 ------ERFDVVTSNHFLHHLDDAEVVRLLADS  154 (232)
T ss_pred             ------CCccEEEECCeeecCChHHHHHHHHHH
Confidence                  468999999774 45555444555444

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.98  E-value=3.1e-09  Score=100.70  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~  114 (240)
                      .+......+++.+...++.+|||||||+|.+|..+++.+ .+|+|+|+++.|++.+++.. ....+++++++|+.+.+++
T Consensus        21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~   98 (475)
T PLN02336         21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLN   98 (475)
T ss_pred             cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccC
Confidence            344456778888877778899999999999999999984 79999999999998776532 2236799999999753322


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCC-CCHHHHHHHHH
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQ  152 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~  152 (240)
                        ++         .+++|.|+++.+++ ++.+.+..++.
T Consensus        99 --~~---------~~~fD~I~~~~~l~~l~~~~~~~~l~  126 (475)
T PLN02336         99 --IS---------DGSVDLIFSNWLLMYLSDKEVENLAE  126 (475)
T ss_pred             --CC---------CCCEEEEehhhhHHhCCHHHHHHHHH
Confidence              11         14689999998854 45443444443

>TIGR00740 methyltransferase, putative

Probab=98.98  E-value=3.9e-09  Score=91.29  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      .++.+|||||||+|.++..++++.   ..+|+|+|+++.|++.+++++....  .+++++++|+.++++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence            467899999999999999998852   3689999999999999998765432  579999999998764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=2.4e-09  Score=100.98  Aligned_cols=91  Identities=13%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~  115 (240)
                      ....++..+.+.++.+|||+|||+|..|..+++..  .++|+|+|+++.+++.++++++..+ .+++++++|+.++. ..
T Consensus       238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~  316 (444)
T PRK14902        238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EK  316 (444)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-ch
Confidence            34455566777889999999999999999999863  4799999999999999999887655 56999999998752 11


Q ss_pred             cchhhhcccccCCCCceEEEecCCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                       +.          +.+|.|+.|+|+.
T Consensus       317 -~~----------~~fD~Vl~D~Pcs  331 (444)
T PRK14902        317 -FA----------EKFDKILVDAPCS  331 (444)
T ss_pred             -hc----------ccCCEEEEcCCCC
Confidence             11          2589999999975

>TIGR00452 methyltransferase, putative

Probab=98.97  E-value=3.6e-09  Score=95.64  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             ccCccccCCHHHHHH-----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc--CCCC
Q psy17126         28 QLSQNFLFEPRLTDK-----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA--SPCP  100 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~-----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~--~~~~  100 (240)
                      .+.| +.++..+...     ++..+...++++|||||||+|.++..++..++..|+|||+++.|+..++.....  ...+
T Consensus        94 ~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~  172 (314)
T TIGR00452        94 ELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKR  172 (314)
T ss_pred             cccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence            3445 6678777544     445556677899999999999999999988766899999999998765432221  1257


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCC-CCCCHH
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTP  145 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~  145 (240)
                      +.++.+++.+++..              ..||.|+++-- |++.+|
T Consensus       173 v~~~~~~ie~lp~~--------------~~FD~V~s~gvL~H~~dp  204 (314)
T TIGR00452       173 AILEPLGIEQLHEL--------------YAFDTVFSMGVLYHRKSP  204 (314)
T ss_pred             eEEEECCHHHCCCC--------------CCcCEEEEcchhhccCCH
Confidence            88888888776532              25788888743 556665

Known examples to date are restricted to the proteobacteria.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.97  E-value=1.7e-09  Score=107.32  Aligned_cols=98  Identities=7%  Similarity=0.060  Sum_probs=75.1

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~  109 (240)
                      |..|....+..+...  .++.+|||+|||||.++..++..++.+|++||+|+.+++.++++++..+   .+++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            455555555555443  2578999999999999999998766689999999999999999886543   47999999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ++ +...           +.+||.||.||||...+
T Consensus       600 ~~-l~~~-----------~~~fDlIilDPP~f~~~  622 (702)
T PRK11783        600 AW-LKEA-----------REQFDLIFIDPPTFSNS  622 (702)
T ss_pred             HH-HHHc-----------CCCcCEEEECCCCCCCC
Confidence            63 1111           14689999999997654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.97  E-value=7.1e-09  Score=88.44  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSF  111 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~  111 (240)
                      .......++..+...++.+|||+|||+|.++..++..++  .+|+++|+++.+++.++++...  ...+++++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            455667778877777788999999999999999998763  7999999999999999987644  235789999999876


Q ss_pred             cccccchhhhcccccCCCCceEEEec
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      ++..             +.+|.|+++
T Consensus       116 ~~~~-------------~~~D~I~~~  128 (239)
T PRK00216        116 PFPD-------------NSFDAVTIA  128 (239)
T ss_pred             CCCC-------------CCccEEEEe
Confidence            5321             357777764

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.96  E-value=2.1e-09  Score=90.10  Aligned_cols=109  Identities=15%  Similarity=0.233  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      +...+.+.+...+..  -++.+|||+-||||+++...+++++.+|+.||.|+..+..+++|++..+  ++++++.+|+..
T Consensus        24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~  103 (183)
T PF03602_consen   24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK  103 (183)
T ss_dssp             SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred             CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence            344566666666654  3789999999999999999999998999999999999999999987654  469999999865


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCH--HHHHHHHH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST--PLIIKWIQ  152 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss--~il~~ll~  152 (240)
                      . +.....        ...++|+|+..|||....  +.+...+.
T Consensus       104 ~-l~~~~~--------~~~~fDiIflDPPY~~~~~~~~~l~~l~  138 (183)
T PF03602_consen  104 F-LLKLAK--------KGEKFDIIFLDPPYAKGLYYEELLELLA  138 (183)
T ss_dssp             H-HHHHHH--------CTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred             H-HHhhcc--------cCCCceEEEECCCcccchHHHHHHHHHH
Confidence            4 222110        124789999999999875  43444444

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.96  E-value=3.3e-09  Score=96.21  Aligned_cols=92  Identities=15%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.+...++...+.+|||||||+|.++..++..++..|+|||+++.|+..++......  ..+++++.+|+.++++.    
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~----  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL----  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc----
Confidence            344556665678999999999999999999987668999999999987654432221  35799999999887652    


Q ss_pred             hhhcccccCCCCceEEEec-CCCCCCHHH
Q psy17126        119 EDRRRDWSEGLPGIRIIGN-LPFNVSTPL  146 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsN-lPY~Iss~i  146 (240)
                                +.||.|+++ .=|++.+|.
T Consensus       188 ----------~~FD~V~s~~vl~H~~dp~  206 (322)
T PRK15068        188 ----------KAFDTVFSMGVLYHRRSPL  206 (322)
T ss_pred             ----------CCcCEEEECChhhccCCHH
Confidence                      357888875 346666553

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.95  E-value=7.1e-09  Score=96.20  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ..+.+++.+++.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++...  .++++..+|+.+++      
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l~------  226 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDLN------  226 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhcC------
Confidence            3456778888889999999999999999999987546999999999999999987643  35788888876531      


Q ss_pred             hhhcccccCCCCceEEEecCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                +++|.|+++..
T Consensus       227 ----------~~fD~Ivs~~~  237 (383)
T PRK11705        227 ----------GQFDRIVSVGM  237 (383)
T ss_pred             ----------CCCCEEEEeCc
Confidence                      35788888754

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.95  E-value=5.8e-09  Score=94.38  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             HHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC------CCCeEEEEccc
Q psy17126         38 RLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS------PCPVHFHLGDV  108 (240)
Q Consensus        38 ~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~------~~~v~vi~~D~  108 (240)
                      .+++.+++.+..   .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....      ..++++..+|+
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            345666666643   257899999999999999999985 69999999999999999876542      13567777886


Q ss_pred             cc
Q psy17126        109 MS  110 (240)
Q Consensus       109 ~~  110 (240)
                      ..
T Consensus       207 ~~  208 (315)
T PLN02585        207 ES  208 (315)
T ss_pred             hh
Confidence            54

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.94  E-value=4.8e-09  Score=92.38  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             cCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcc
Q psy17126         47 AGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        47 ~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ..+.++++|||||||+|..+..+++.. . .+|+|+|+++.|++.++++....+ ++++++.+|+.++++++        
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~--------  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD--------  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence            456789999999999999888777652 2 479999999999999998765543 68999999998876432        


Q ss_pred             cccCCCCceEEEecCCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~I  142 (240)
                           +.+|.|++|.-++.
T Consensus       145 -----~~fD~Vi~~~v~~~  158 (272)
T PRK11873        145 -----NSVDVIISNCVINL  158 (272)
T ss_pred             -----CceeEEEEcCcccC
Confidence                 36899999875543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.94  E-value=3.6e-09  Score=97.41  Aligned_cols=116  Identities=15%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHH----cCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         35 FEPRLTDKIVRN----AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        35 ~d~~i~~~iv~~----~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      +++.+.+.+++.    +... +.+|||++||+|.++..+++. ..+|+|||+++.+++.+++++...+ .|++++.+|+.
T Consensus       187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~  264 (362)
T PRK05031        187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE  264 (362)
T ss_pred             cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            455555555544    3322 357999999999999999886 4799999999999999999876544 58999999997


Q ss_pred             cccccccchhhh-c-cccc--CCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        110 SFTMQNMFSEDR-R-RDWS--EGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       110 ~~~~~~~~~~~~-~-~~~~--~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ++ ++.+..... . ..+.  ...++|+||.+||+.-..+.+.+++..
T Consensus       265 ~~-l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~  311 (362)
T PRK05031        265 EF-TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA  311 (362)
T ss_pred             HH-HHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            74 222110000 0 0000  012479999999986545555555544

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.94  E-value=2.4e-09  Score=97.13  Aligned_cols=75  Identities=8%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..+++.+ .+|+|||+++.|++.++.+....  ..+++++++|+.++++.+            
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~------------  196 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG------------  196 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc------------
Confidence            356799999999999999999874 69999999999999998765432  247999999998765422            


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                       ++||+|++.-
T Consensus       197 -~~FD~Vi~~~  206 (322)
T PLN02396        197 -RKFDAVLSLE  206 (322)
T ss_pred             -CCCCEEEEhh
Confidence             3678888753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.94  E-value=3.1e-09  Score=89.53  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      .++-....++||+|||.|.||..|+.+ +.+++++|+++..++.++++.... ++|+++++|+.+....           
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~-----------  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWPE-----------  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT---S-----------
T ss_pred             hcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCCC-----------
Confidence            466667789999999999999999999 589999999999999999987654 7899999999764322           


Q ss_pred             cCCCCce-EEEecCCCCCCH-HHHHHHHHhcc
Q psy17126        126 SEGLPGI-RIIGNLPFNVST-PLIIKWIQAIS  155 (240)
Q Consensus       126 ~~~~~~~-~VvsNlPY~Iss-~il~~ll~~~~  155 (240)
                         ++|| +|+|-+=||++. ..+..++....
T Consensus       105 ---~~FDLIV~SEVlYYL~~~~~L~~~l~~l~  133 (201)
T PF05401_consen  105 ---GRFDLIVLSEVLYYLDDAEDLRAALDRLV  133 (201)
T ss_dssp             ---S-EEEEEEES-GGGSSSHHHHHHHHHHHH
T ss_pred             ---CCeeEEEEehHhHcCCCHHHHHHHHHHHH
Confidence               3455 578888999985 56666665543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.92  E-value=4.9e-09  Score=98.65  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=77.2

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      |.++......++..+.+.++++|||+|||+|..|..++...  .++|+|+|+++.+++.++++++..+ .+++++++|+.
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            34444445556666788889999999999999999999863  3689999999999999999887765 57999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++.-....       +  .+.+|.|+.+.|.+-
T Consensus       314 ~~~~~~~~-------~--~~~fD~Vl~DaPCSg  337 (434)
T PRK14901        314 NLLELKPQ-------W--RGYFDRILLDAPCSG  337 (434)
T ss_pred             hccccccc-------c--cccCCEEEEeCCCCc
Confidence            75311000       0  136899999999653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.92  E-value=1.8e-09  Score=93.24  Aligned_cols=90  Identities=18%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             cCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      .+++.-...|.+.+..   .++.+|||||||-|.|+.++|+.+ ..|+|+|+++.+++.++..+.+.+-++...+..+++
T Consensus        39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed  117 (243)
T COG2227          39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED  117 (243)
T ss_pred             eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH
Confidence            4455445555555442   478999999999999999999996 799999999999999998765543334455555554


Q ss_pred             ccccccchhhhcccccCCCCceEEEec
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      +...             +++||+|+++
T Consensus       118 l~~~-------------~~~FDvV~cm  131 (243)
T COG2227         118 LASA-------------GGQFDVVTCM  131 (243)
T ss_pred             HHhc-------------CCCccEEEEh
Confidence            3211             1478988874

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.91  E-value=6.4e-09  Score=94.32  Aligned_cols=114  Identities=17%  Similarity=0.089  Sum_probs=93.5

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      ++.+....+.-+ +---++|.++..++..+.+++|+.|||.=||||++...+.-.| .+|+|.|+|.+|+.-++.|++.+
T Consensus       165 ~~~r~~~kRPf~-~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y  242 (347)
T COG1041         165 FEKRDPEKRPFF-RPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYY  242 (347)
T ss_pred             HhhcCcccCCcc-CcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhh
Confidence            444443333333 3367799999999999999999999999999999999998875 79999999999999999999877


Q ss_pred             C-CCeEEEEc-ccccccccccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126         98 P-CPVHFHLG-DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus        98 ~-~~v~vi~~-D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                      + ..+.++.. |+.++++++             ..+|.|+..|||.+++.+
T Consensus       243 ~i~~~~~~~~~Da~~lpl~~-------------~~vdaIatDPPYGrst~~  280 (347)
T COG1041         243 GIEDYPVLKVLDATNLPLRD-------------NSVDAIATDPPYGRSTKI  280 (347)
T ss_pred             CcCceeEEEecccccCCCCC-------------CccceEEecCCCCccccc
Confidence            5 56777777 999998654             247999999999998843

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=6.6e-09  Score=98.08  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      ....+..+.+.++++|||+|||+|..|..+++..  .++|+|+|+++.+++.++++++..+ .+++++++|+.++.. . 
T Consensus       239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-~-  316 (445)
T PRK14904        239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-E-  316 (445)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-C-
Confidence            3344556677789999999999999999988753  3699999999999999999887655 579999999987531 1 


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                                  .++|.|+.++|+.-+
T Consensus       317 ------------~~fD~Vl~D~Pcsg~  331 (445)
T PRK14904        317 ------------EQPDAILLDAPCTGT  331 (445)
T ss_pred             ------------CCCCEEEEcCCCCCc
Confidence                        358999999997443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.90  E-value=6e-09  Score=95.69  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      .+++.+++.+...+ .+|||+|||+|.++..|+.. +.+|+|||+++.+++.+++++...+ .+++++.+|+.++- +..
T Consensus       185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~-~~~  261 (353)
T TIGR02143       185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT-QAM  261 (353)
T ss_pred             HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH-HHH
Confidence            34455555554333 47999999999999999887 4799999999999999999876544 57999999997742 211


Q ss_pred             chhhhccccc--C-----CCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        117 FSEDRRRDWS--E-----GLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       117 ~~~~~~~~~~--~-----~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ..   ...|.  .     ...+|.|+-+||..-..+.+.+++..
T Consensus       262 ~~---~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~  302 (353)
T TIGR02143       262 NG---VREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA  302 (353)
T ss_pred             hh---ccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            00   00010  0     01369999999976555666666654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.89  E-value=1e-08  Score=101.96  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             ccCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC--------------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR--------------------------------------   73 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~--------------------------------------   73 (240)
                      ..+.+.++..|+..+++ .++..++|.+||+|++.+..+...                                      
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            45778899999999988 678999999999999998876531                                      


Q ss_pred             -----CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         74 -----PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        74 -----~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                           ..+++|+|+|+.+++.++.|+...+  +.++++++|+.++..+..           .+.+|.||+||||...
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----------~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----------KGPTGLVISNPPYGER  316 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----------cCCCCEEEECCCCcCc
Confidence                 1269999999999999999987654  568999999988653220           1357999999999643

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.89  E-value=1.3e-08  Score=89.06  Aligned_cols=48  Identities=19%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      ..++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.++++...
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            357899999999999999988887656799999999999999988754

>PRK06922 hypothetical protein; Provisional

Probab=98.89  E-value=6.3e-09  Score=101.36  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126         47 AGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        47 ~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      +...++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++....+.+++++++|+.+++  ..++.      
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp--~~fed------  485 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS--SSFEK------  485 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc--cccCC------
Confidence            344568899999999999999998764 369999999999999998876544467889999998754  21211      


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         +++|.|++|.++
T Consensus       486 ---eSFDvVVsn~vL  497 (677)
T PRK06922        486 ---ESVDTIVYSSIL  497 (677)
T ss_pred             ---CCEEEEEEchHH
Confidence               468999998764

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.88  E-value=2.7e-08  Score=89.20  Aligned_cols=100  Identities=12%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~  115 (240)
                      +...+++.+...++.+|||||||+|.++..++++.+ .+++++|. +.+++.+++++...+  ++++++.+|+.+.+++.
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~  215 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE  215 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence            455677777778889999999999999999999864 68999998 789999988766543  68999999998754432


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                                    ...+++++..+....+...+++.+
T Consensus       216 --------------~D~v~~~~~lh~~~~~~~~~il~~  239 (306)
T TIGR02716       216 --------------ADAVLFCRILYSANEQLSTIMCKK  239 (306)
T ss_pred             --------------CCEEEeEhhhhcCChHHHHHHHHH
Confidence                          123467887776665544444443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.87  E-value=1.6e-08  Score=88.47  Aligned_cols=95  Identities=18%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      +-+.-+..|+..+++.||++|||.|.|+|+||..|+...  .++|+.+|+.++.++.|+++++..+  +++++.++|+.+
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence            445667789999999999999999999999999999753  3799999999999999999887654  689999999976


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      -.+..-.          ...+|.|+-.||
T Consensus       104 ~g~~~~~----------~~~~DavfLDlp  122 (247)
T PF08704_consen  104 EGFDEEL----------ESDFDAVFLDLP  122 (247)
T ss_dssp             G--STT-----------TTSEEEEEEESS
T ss_pred             ccccccc----------cCcccEEEEeCC
Confidence            4442211          135799999998

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.87  E-value=1.6e-08  Score=85.29  Aligned_cols=90  Identities=12%  Similarity=0.211  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM  113 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~  113 (240)
                      +......+++.+...++.+|||+|||+|.++..+++..+  .+++++|+++.+++.++++.. ...+++++.+|+.+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~  102 (223)
T TIGR01934        24 HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPF  102 (223)
T ss_pred             HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCC
Confidence            355666777777777889999999999999999998764  489999999999999987654 34679999999988653


Q ss_pred             cccchhhhcccccCCCCceEEEecCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ..             +++|.|+++.-
T Consensus       103 ~~-------------~~~D~i~~~~~  115 (223)
T TIGR01934       103 ED-------------NSFDAVTIAFG  115 (223)
T ss_pred             CC-------------CcEEEEEEeee
Confidence            21             35788877643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.86  E-value=1.2e-08  Score=94.43  Aligned_cols=87  Identities=11%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +++......+..+||||||+|.++..+|.+.+ ..++|||+++.|+..+.+++...+ .|+.++++|+..+.  ..++. 
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll--~~~~~-  190 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL--ELLPS-  190 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--hhCCC-
Confidence            44444555677999999999999999999753 689999999999999988765544 68999999997642  11221 


Q ss_pred             hcccccCCCCceEEEecCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY  140 (240)
                              +.+|.|+.|.|.
T Consensus       191 --------~s~D~I~lnFPd  202 (390)
T PRK14121        191 --------NSVEKIFVHFPV  202 (390)
T ss_pred             --------CceeEEEEeCCC
Confidence                    467899999874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.4e-08  Score=88.46  Aligned_cols=89  Identities=24%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      |.-+..|+..+++.+|++|+|.|.|+|+||..|+.. ++ ++|+++|+.+++++.|++|++.++  +++++..+|+.+.-
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            334667888999999999999999999999999974 33 799999999999999999987654  56999999998754


Q ss_pred             ccccchhhhcccccCCCCceEEEecCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++              .+|+||-.+|
T Consensus       160 ~~~--------------~vDav~LDmp  172 (256)
T COG2519         160 DEE--------------DVDAVFLDLP  172 (256)
T ss_pred             ccc--------------ccCEEEEcCC
Confidence            332              4688887776

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.86  E-value=1.4e-08  Score=89.76  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=57.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC----CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP----ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~----~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      ....+|||||||+|.++..++...+    ..|+|+|+|+.|+..++++    .++++++.+|+.++++++          
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~----------  149 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFAD----------  149 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcC----------
Confidence            3557899999999999999987632    3799999999999998753    257899999998877543          


Q ss_pred             cCCCCceEEEecC
Q psy17126        126 SEGLPGIRIIGNL  138 (240)
Q Consensus       126 ~~~~~~~~VvsNl  138 (240)
                         +.+|.|+++.
T Consensus       150 ---~sfD~I~~~~  159 (272)
T PRK11088        150 ---QSLDAIIRIY  159 (272)
T ss_pred             ---CceeEEEEec
Confidence               3578888865

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.86  E-value=1.3e-08  Score=95.52  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEE--EEcccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHF--HLGDVMSF  111 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~v--i~~D~~~~  111 (240)
                      ++..-...++..+++.++.+|||+|||+|..|..++... .++|+|+|+++.++..++++++..+-.+++  +.+|....
T Consensus       222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~  301 (426)
T TIGR00563       222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP  301 (426)
T ss_pred             EECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence            333445666777888899999999999999999999864 369999999999999999988765533444  66776543


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ..  .         ....++|.|+.+.|++-+
T Consensus       302 ~~--~---------~~~~~fD~VllDaPcSg~  322 (426)
T TIGR00563       302 SQ--W---------AENEQFDRILLDAPCSAT  322 (426)
T ss_pred             cc--c---------ccccccCEEEEcCCCCCC
Confidence            21  0         011468999999997644

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.84  E-value=1.3e-08  Score=93.46  Aligned_cols=97  Identities=18%  Similarity=0.105  Sum_probs=81.5

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC------C-------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP------A-------------------------------   75 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~------~-------------------------------   75 (240)
                      ..+.+.++..|+..+++.++..++|.=||+|++.+..|..+.      .                               
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            567788999999999999999999999999999998887642      0                               


Q ss_pred             ---eEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         76 ---RLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        76 ---~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                         .++|+|+|+++++.|+.|+...+  +.+++.++|+.++.-+-             ..+++||+||||..
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-------------~~~gvvI~NPPYGe  311 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-------------EEYGVVISNPPYGE  311 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-------------CcCCEEEeCCCcch
Confidence               37899999999999999987665  77999999998864321             24699999999963

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.84  E-value=1.6e-08  Score=92.38  Aligned_cols=88  Identities=15%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      .+...+++.+.+ .++.+|||||||+|.++..+++.. ..+|+++|+++.|++.++++..  ..+++++.+|+.++++++
T Consensus        99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~  176 (340)
T PLN02490         99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPT  176 (340)
T ss_pred             HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCC
Confidence            345556665554 367899999999999999998763 3689999999999999987643  257899999998876542


Q ss_pred             cchhhhcccccCCCCceEEEecCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                   +.+|.|+++...
T Consensus       177 -------------~sFDvVIs~~~L  188 (340)
T PLN02490        177 -------------DYADRYVSAGSI  188 (340)
T ss_pred             -------------CceeEEEEcChh
Confidence                         358999987654

>TIGR03438 probable methyltransferase

Probab=98.83  E-value=3.7e-08  Score=88.46  Aligned_cols=69  Identities=28%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      +..|++.+  .++.+|||+|||||..|..|++..  ..+|+|||+|++|++.+++++....  -++..+++|+.+
T Consensus        54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            34455444  356799999999999999999875  3689999999999999987654322  346778999976

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.83  E-value=1.8e-08  Score=85.98  Aligned_cols=84  Identities=14%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             HHHcC-CCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchh
Q psy17126         44 VRNAG-TITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSE  119 (240)
Q Consensus        44 v~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~  119 (240)
                      .+... +.++.+|||||||||.+|..++++.+  ++|+|||+++ |.        . ..+++++++|+.+... ..+...
T Consensus        43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~-~~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P-IVGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C-CCCcEEEecCCCChHHHHHHHHH
Confidence            33344 46789999999999999999998742  5899999998 21        1 1469999999987541 111110


Q ss_pred             hhcccccCCCCceEEEecC-CCCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNL-PFNVS  143 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNl-PY~Is  143 (240)
                           + ..+.+|.|++|+ |+...
T Consensus       113 -----~-~~~~~D~V~S~~~~~~~g  131 (209)
T PRK11188        113 -----V-GDSKVQVVMSDMAPNMSG  131 (209)
T ss_pred             -----h-CCCCCCEEecCCCCccCC
Confidence                 0 114689999998 54433

>KOG1540|consensus

Probab=98.79  E-value=3.7e-08  Score=85.85  Aligned_cols=86  Identities=21%  Similarity=0.334  Sum_probs=70.5

Q ss_pred             hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C------CeEEEEeCCcchHHHHHHHHhcCC
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P------ARLVLIEKDPRFTPCLDMLAQASP   98 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~------~~V~avEid~~m~~~l~~~~~~~~   98 (240)
                      ..++|+|    +-+-+..+.++++.++.+|||++||||.+|..+++.. .      .+|+.+|+++.|+..+++++.+.+
T Consensus        79 ~mSlGiH----RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~  154 (296)
T KOG1540|consen   79 AMSLGIH----RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP  154 (296)
T ss_pred             Hhhcchh----HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC
Confidence            4567776    3345567788888899999999999999999999863 2      689999999999999988764432


Q ss_pred             ----CCeEEEEcccccccccc
Q psy17126         99 ----CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        99 ----~~v~vi~~D~~~~~~~~  115 (240)
                          .++.++.+|++++++++
T Consensus       155 l~~~~~~~w~~~dAE~LpFdd  175 (296)
T KOG1540|consen  155 LKASSRVEWVEGDAEDLPFDD  175 (296)
T ss_pred             CCcCCceEEEeCCcccCCCCC
Confidence                45999999999999875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.79  E-value=2e-08  Score=84.39  Aligned_cols=79  Identities=16%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +.|++++  .++.+|||+|||.|.|...|......+.+|||+|++.+..+.+      ..+.|+++|+.+ .+..+ +  
T Consensus         5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~------rGv~Viq~Dld~-gL~~f-~--   72 (193)
T PF07021_consen    5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA------RGVSVIQGDLDE-GLADF-P--   72 (193)
T ss_pred             HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH------cCCCEEECCHHH-hHhhC-C--
Confidence            3455554  4789999999999999999988545799999999998766543      347899999986 34332 1  


Q ss_pred             hcccccCCCCceEEEecC
Q psy17126        121 RRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNl  138 (240)
                             .++||.||-+-
T Consensus        73 -------d~sFD~VIlsq   83 (193)
T PF07021_consen   73 -------DQSFDYVILSQ   83 (193)
T ss_pred             -------CCCccEEehHh
Confidence                   15789888653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.78  E-value=2.3e-08  Score=89.65  Aligned_cols=77  Identities=21%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      +-|-+++.+++.+.+.++..++|.+||.|..|..+++..+  ++|+|+|.|+.+++.+++++.. .++++++++|+.++.
T Consensus         3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~   81 (296)
T PRK00050          3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK   81 (296)
T ss_pred             CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence            4567888999999988999999999999999999999853  7999999999999999987655 578999999998863

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.78  E-value=2.3e-08  Score=83.92  Aligned_cols=81  Identities=19%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +.+.+.+  .++.+|||||||+|.++..++......++|+|+++.|+..+++      .+++++++|+.+. +.. ++  
T Consensus         5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~-l~~-~~--   72 (194)
T TIGR02081         5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEG-LEA-FP--   72 (194)
T ss_pred             HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhc-ccc-cC--
Confidence            3455544  3678999999999999999987644688999999999988763      3578899998652 111 11  


Q ss_pred             hcccccCCCCceEEEecCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY  140 (240)
                             .+++|.|++|.++
T Consensus        73 -------~~sfD~Vi~~~~l   85 (194)
T TIGR02081        73 -------DKSFDYVILSQTL   85 (194)
T ss_pred             -------CCCcCEEEEhhHh
Confidence                   1468999999774

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.77  E-value=6.7e-08  Score=83.88  Aligned_cols=98  Identities=9%  Similarity=-0.029  Sum_probs=71.4

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+.+.....+.-.+...+..+|||||||+|.-+..++...  .++|+++|+|+.+++.++++++..+  ++++++++|+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            4566554444444555667899999999999888888753  3799999999999999999877654  68999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      +. ++.+.+.      ...++||.|+.+.
T Consensus       131 ~~-L~~l~~~------~~~~~fD~VfiDa  152 (234)
T PLN02781        131 SA-LDQLLNN------DPKPEFDFAFVDA  152 (234)
T ss_pred             HH-HHHHHhC------CCCCCCCEEEECC
Confidence            74 2222110      0014689999875

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=3e-08  Score=93.26  Aligned_cols=120  Identities=19%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             cCCHHHHHHHH----HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         34 LFEPRLTDKIV----RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        34 l~d~~i~~~iv----~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      -+++.+.++|.    ++++..++++|||+=||.|.+|..||++ ..+|+|+|+++.+++.++++++..+ .|++++.+|+
T Consensus       272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a  350 (432)
T COG2265         272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA  350 (432)
T ss_pred             ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH
Confidence            34555555554    5566778899999999999999999987 4899999999999999999987765 6799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc-----cccccchh
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-----NLLFPKHK  164 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~-----~~~~~~~~  164 (240)
                      .++...          |..+..+|.||-+||-.=..+.+.+.+.+...     ..|.+.-+
T Consensus       351 e~~~~~----------~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         351 EEFTPA----------WWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL  401 (432)
T ss_pred             HHHhhh----------ccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence            886422          21224679999999987666555566555443     45665444

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.74  E-value=2.7e-08  Score=91.35  Aligned_cols=131  Identities=16%  Similarity=0.152  Sum_probs=78.5

Q ss_pred             ccccCCHHHHHH----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126         31 QNFLFEPRLTDK----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL  105 (240)
Q Consensus        31 Q~fl~d~~i~~~----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~  105 (240)
                      --|-+++.+..+    ++++++..++ .|||+-||+|.+|.+|+.. ..+|+|||+++.+++.|++++...+ .|++++.
T Consensus       173 sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~  250 (352)
T PF05958_consen  173 SFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIR  250 (352)
T ss_dssp             S---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred             cCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEE
Confidence            334455555544    4555666555 8999999999999999998 4799999999999999999887655 7899999


Q ss_pred             ccccccccc--c--cchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc---cccccchh
Q psy17126        106 GDVMSFTMQ--N--MFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---NLLFPKHK  164 (240)
Q Consensus       106 ~D~~~~~~~--~--~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---~~~~~~~~  164 (240)
                      +++.++.-.  .  .+.......+. ...+|.||-.||-.-..+.+.+++.+...   ..|.+.-+
T Consensus       251 ~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tl  315 (352)
T PF05958_consen  251 GDAEDFAKALAKAREFNRLKGIDLK-SFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATL  315 (352)
T ss_dssp             --SHHCCCHHCCS-GGTTGGGS-GG-CTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHH
T ss_pred             eeccchhHHHHhhHHHHhhhhhhhh-hcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHH
Confidence            988765211  0  00000000011 12578999999987777766677665443   45665443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.73  E-value=4.1e-08  Score=83.71  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccc
Q psy17126         53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFT  112 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~  112 (240)
                      ++|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....  .++++++.+|+.+.+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            379999999999999999875 368999999999999999876543  367899999987654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.73  E-value=2e-08  Score=82.60  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      ..|+|+.||.|.-|..+|+.. .+|+|||+|+..++.++.|++-++  ++++++++|+.++- ..+...         ..
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~-~~~~~~---------~~   69 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL-KRLKSN---------KI   69 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG-GGB--------------
T ss_pred             CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH-hhcccc---------cc
Confidence            369999999999999999984 799999999999999999998775  68999999998852 121100         12


Q ss_pred             ceEEEecCCCCCC
Q psy17126        131 GIRIIGNLPFNVS  143 (240)
Q Consensus       131 ~~~VvsNlPY~Is  143 (240)
                      +|.|+.+|||.-.
T Consensus        70 ~D~vFlSPPWGGp   82 (163)
T PF09445_consen   70 FDVVFLSPPWGGP   82 (163)
T ss_dssp             -SEEEE---BSSG
T ss_pred             ccEEEECCCCCCc
Confidence            6899999998643

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.73  E-value=9.1e-08  Score=69.04  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CCCCeEEEEcccccccccccchhhhcccccCCCCce
Q psy17126         54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI  132 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~  132 (240)
                      +|+|+|||+|.++..++.....+++++|+++.++..+++.... ...+++++.+|+.+.....            .+++|
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~d   68 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA------------DESFD   68 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc------------CCceE
Confidence            4899999999999999984357999999999999988743222 2367899999998764311            14689


Q ss_pred             EEEecCCCCC
Q psy17126        133 RIIGNLPFNV  142 (240)
Q Consensus       133 ~VvsNlPY~I  142 (240)
                      .|+.|.|+..
T Consensus        69 ~i~~~~~~~~   78 (107)
T cd02440          69 VIISDPPLHH   78 (107)
T ss_pred             EEEEccceee
Confidence            9999999765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.73  E-value=7.2e-08  Score=80.78  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         37 PRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        37 ~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      ..+-+.+-.++..  -.|.++||+=+|||+++...+++++.+++.||.|...+..+++|.+..+  .+.+++..|+... 
T Consensus        27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~-  105 (187)
T COG0742          27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA-  105 (187)
T ss_pred             hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH-
Confidence            3455666666654  4789999999999999999999998999999999999999999988776  8899999999832 


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++..-.         ..+||.|+..|||+-
T Consensus       106 L~~~~~---------~~~FDlVflDPPy~~  126 (187)
T COG0742         106 LKQLGT---------REPFDLVFLDPPYAK  126 (187)
T ss_pred             HHhcCC---------CCcccEEEeCCCCcc
Confidence            222211         124899999999983

>PRK04148 hypothetical protein; Provisional

Probab=98.72  E-value=7.7e-08  Score=76.62  Aligned_cols=89  Identities=11%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      +.+.|.+.+...++.+|+|||||+|. ++..|++.+ ..|+|+|+++..++.++++      .++++.+|+.+-+++-. 
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~y-   75 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEIY-   75 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHHH-
Confidence            55666666665567899999999996 999998875 7999999999998887652      37899999998765421 


Q ss_pred             hhhhcccccCCCCceEEEe-cCCCCCCHHH
Q psy17126        118 SEDRRRDWSEGLPGIRIIG-NLPFNVSTPL  146 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~i  146 (240)
                                 ...+.|.| +||.-+-.|+
T Consensus        76 -----------~~a~liysirpp~el~~~~   94 (134)
T PRK04148         76 -----------KNAKLIYSIRPPRDLQPFI   94 (134)
T ss_pred             -----------hcCCEEEEeCCCHHHHHHH
Confidence                       23567766 5555444444

>KOG1270|consensus

Probab=98.71  E-value=2.5e-08  Score=87.11  Aligned_cols=43  Identities=16%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      |.+|||+|||+|-|+.+|++.+ +.|+|||+++.|++.+++...
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~  132 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKK  132 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhh
Confidence            4789999999999999999985 799999999999999998743

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.70  E-value=1.8e-07  Score=80.28  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      ++..++.+...+...++.+|||||||+|.++..+++.+ .+|+++|+++.++..++++......+++++.+|+.++....
T Consensus        33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH  111 (233)
T ss_pred             hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence            34445566666656678899999999999999998874 68999999999999998876544446778888876543110


Q ss_pred             cchhhhcccccCCCCceEEEecCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                  .+++|+|+++..
T Consensus       112 ------------~~~fD~Ii~~~~  123 (233)
T PRK05134        112 ------------PGQFDVVTCMEM  123 (233)
T ss_pred             ------------CCCccEEEEhhH
Confidence                        136788877643

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.68  E-value=8.3e-08  Score=84.75  Aligned_cols=91  Identities=10%  Similarity=-0.008  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCchhH----HHHHHHhhC------CCeEEEEeCCcchHHHHHHHHh------c-----------------
Q psy17126         50 ITGNEVCEVGPGPGS----ITRSILNRR------PARLVLIEKDPRFTPCLDMLAQ------A-----------------   96 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~----lt~~La~~~------~~~V~avEid~~m~~~l~~~~~------~-----------------   96 (240)
                      .++.+|+|+|||||.    +++.+++..      ..+|+|+|+|+.|++.|++..-      .                 
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            355799999999995    566666542      2589999999999999987420      0                 


Q ss_pred             -----CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHh
Q psy17126         97 -----SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQA  153 (240)
Q Consensus        97 -----~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~  153 (240)
                           ...++++.++|+.+.+++.             +++|+|++ |.=.+.+.+...+++..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~-------------~~fD~I~crnvl~yf~~~~~~~~l~~  227 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPL-------------GDFDLIFCRNVLIYFDEPTQRKLLNR  227 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCcc-------------CCCCEEEechhHHhCCHHHHHHHHHH
Confidence                 0136888889988765421             36788877 44445555554445443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.68  E-value=8.2e-09  Score=76.91  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             EEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126         56 CEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR  133 (240)
Q Consensus        56 LEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (240)
                      ||||||+|.++..++... ..+++++|+|+.|++.++++..... .+...+..+..+......           .+++|.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~fD~   69 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-----------PESFDL   69 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC---------------SE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-----------ccccce
Confidence            799999999999999984 3799999999999988877665543 334444444433211110           126788


Q ss_pred             EEecCCCCCCHHHHHHHHHh
Q psy17126        134 IIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       134 VvsNlPY~Iss~il~~ll~~  153 (240)
                      |+++--..-. +-+..++..
T Consensus        70 V~~~~vl~~l-~~~~~~l~~   88 (99)
T PF08242_consen   70 VVASNVLHHL-EDIEAVLRN   88 (99)
T ss_dssp             EEEE-TTS---S-HHHHHHH
T ss_pred             ehhhhhHhhh-hhHHHHHHH
Confidence            8876543322 333344444

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.67  E-value=2.1e-08  Score=83.82  Aligned_cols=86  Identities=14%  Similarity=0.266  Sum_probs=65.1

Q ss_pred             ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEc
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLG  106 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~  106 (240)
                      +|..+.|.|-.-+...-+++.-...+.+.|+|+|+|.|+...++. +.+|+|||.||.-..++.+|+.-.+ .|++++.+
T Consensus         9 ~yh~~LL~D~eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g   87 (252)
T COG4076           9 SYHLDLLRDVERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVG   87 (252)
T ss_pred             hhHhhhhhhHHHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEec
Confidence            355556666554433333332223478999999999999998887 6899999999999999998864333 78999999


Q ss_pred             cccccccc
Q psy17126        107 DVMSFTMQ  114 (240)
Q Consensus       107 D~~~~~~~  114 (240)
                      |+..++++
T Consensus        88 DA~~y~fe   95 (252)
T COG4076          88 DARDYDFE   95 (252)
T ss_pred             cccccccc
Confidence            99999874

>KOG1500|consensus

Probab=98.67  E-value=6.7e-08  Score=87.17  Aligned_cols=84  Identities=14%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.|++...--.+..|||+|||+|.|+...+..++++|+|||-+ +|.+++++..+..  .+++++|.|-++++.+++   
T Consensus       167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE---  242 (517)
T KOG1500|consen  167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE---  242 (517)
T ss_pred             HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch---
Confidence            3444433334678999999999999999999988999999986 6899999876543  378999999999998875   


Q ss_pred             hhhcccccCCCCceEEEecCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                 +.|++|+.+=
T Consensus       243 -----------k~DviISEPM  252 (517)
T KOG1500|consen  243 -----------KVDVIISEPM  252 (517)
T ss_pred             -----------hccEEEeccc
Confidence                       4588888753

>PRK00811 spermidine synthase; Provisional

Probab=98.67  E-value=7.7e-08  Score=85.77  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC------CCCeEEEEcccccccccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS------PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~------~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ...+||+||||+|.+++.++++ ...+|++||+|+.+++.+++.....      .++++++.+|+.++- .. .      
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~-~------  147 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV-AE-T------  147 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-hh-C------
Confidence            4679999999999999999987 3469999999999999999866421      368999999998742 11 0      


Q ss_pred             cccCCCCceEEEecC
Q psy17126        124 DWSEGLPGIRIIGNL  138 (240)
Q Consensus       124 ~~~~~~~~~~VvsNl  138 (240)
                          .+++|+||+++
T Consensus       148 ----~~~yDvIi~D~  158 (283)
T PRK00811        148 ----ENSFDVIIVDS  158 (283)
T ss_pred             ----CCcccEEEECC
Confidence                14689999986

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.66  E-value=9.3e-08  Score=81.24  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             HHhCchhhhccCccccCCHHHHH--HHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         19 KLYKLRALKQLSQNFLFEPRLTD--KIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        19 ~~~~~~~~k~~gQ~fl~d~~i~~--~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      +.+|++.+=.+.+.|.-.....+  +|++.  ..++++|+|+.||.|.++..+++.. +..|+|+|++|..++.++++++
T Consensus        69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~  146 (200)
T PF02475_consen   69 KENGIRFKVDLSKVYFSPRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR  146 (200)
T ss_dssp             EETTEEEEEETTTS---GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH
T ss_pred             EeCCEEEEEccceEEEccccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH
Confidence            34555544445554444433333  33332  5689999999999999999999832 4789999999999999999876


Q ss_pred             cCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         96 ASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        96 ~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ...  +++.++++|+.++...              ..+|.|+.|+|....
T Consensus       147 lNkv~~~i~~~~~D~~~~~~~--------------~~~drvim~lp~~~~  182 (200)
T PF02475_consen  147 LNKVENRIEVINGDAREFLPE--------------GKFDRVIMNLPESSL  182 (200)
T ss_dssp             HTT-TTTEEEEES-GGG---T--------------T-EEEEEE--TSSGG
T ss_pred             HcCCCCeEEEEcCCHHHhcCc--------------cccCEEEECChHHHH
Confidence            543  7799999999886431              357999999997543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.65  E-value=2e-07  Score=79.90  Aligned_cols=70  Identities=13%  Similarity=0.012  Sum_probs=53.9

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeEEEEcccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVHFHLGDVM  109 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~vi~~D~~  109 (240)
                      .+..+...++.+|||+|||.|.-+..|+.+| ..|+|||+|+.+++.+.+....             ...+++++++|+.
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~  104 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF  104 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence            4444433467799999999999999999986 6999999999999986432110             1246899999998


Q ss_pred             cccc
Q psy17126        110 SFTM  113 (240)
Q Consensus       110 ~~~~  113 (240)
                      +++.
T Consensus       105 ~~~~  108 (213)
T TIGR03840       105 ALTA  108 (213)
T ss_pred             CCCc
Confidence            8763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG3191|consensus

Probab=98.64  E-value=1.5e-07  Score=78.27  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ....++|||||+|..+..|++..  .....+.|+++..++...+.+....-++.+++.|...- +..             
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~-------------  108 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRN-------------  108 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hcc-------------
Confidence            35789999999999999999864  25789999999999988776654446688899988652 111             


Q ss_pred             CCceEEEecCCCCCCHHH
Q psy17126        129 LPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       129 ~~~~~VvsNlPY~Iss~i  146 (240)
                      ++.|+++-|+||-.+++-
T Consensus       109 ~~VDvLvfNPPYVpt~~~  126 (209)
T KOG3191|consen  109 ESVDVLVFNPPYVPTSDE  126 (209)
T ss_pred             CCccEEEECCCcCcCCcc
Confidence            367999999999888754

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.64  E-value=1.1e-07  Score=80.76  Aligned_cols=91  Identities=15%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHcCC----CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC-CeEEEEcccc
Q psy17126         35 FEPRLTDKIVRNAGT----ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC-PVHFHLGDVM  109 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~----~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~-~v~vi~~D~~  109 (240)
                      .++..+..+.+.+..    ..+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+. +++++.+|+.
T Consensus        25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~  103 (224)
T TIGR01983        25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVE  103 (224)
T ss_pred             hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence            356566666666652    347899999999999999998875 5899999999999999887654433 6888889887


Q ss_pred             cccccccchhhhcccccCCCCceEEEecC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      ++....            .+++|.|+++-
T Consensus       104 ~~~~~~------------~~~~D~i~~~~  120 (224)
T TIGR01983       104 DLAEKG------------AKSFDVVTCME  120 (224)
T ss_pred             HhhcCC------------CCCccEEEehh
Confidence            754321            13678888763

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK04457 spermidine synthase; Provisional

Probab=98.63  E-value=3.5e-07  Score=80.69  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=63.7

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccc
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~  115 (240)
                      .+.|+..+. ..+..+|||||||+|.++..+++.. ..+|++||+|+.+++.++++....  .++++++.+|+.++ +..
T Consensus        54 ~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~  132 (262)
T PRK04457         54 TRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV  132 (262)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh
Confidence            344443332 3356789999999999999998875 368999999999999999875432  36899999999764 111


Q ss_pred             cchhhhcccccCCCCceEEEecC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      .           ..++|+|+.+.
T Consensus       133 ~-----------~~~yD~I~~D~  144 (262)
T PRK04457        133 H-----------RHSTDVILVDG  144 (262)
T ss_pred             C-----------CCCCCEEEEeC
Confidence            1           13578888764

>PTZ00146 fibrillarin; Provisional

Probab=98.61  E-value=2.7e-07  Score=82.47  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             HHHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .++..|+.   .+.+.++++|||+|||+|.+|..++...  ...|+|||++++|.+.+.+.+.. ..|+.++.+|+....
T Consensus       116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~  194 (293)
T PTZ00146        116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ  194 (293)
T ss_pred             HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh
Confidence            35555643   3457899999999999999999999974  36899999999877555543322 268999999987521


Q ss_pred             -ccccchhhhcccccCCCCceEEEecCC
Q psy17126        113 -MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       113 -~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       +....           ..+|+|+++..
T Consensus       195 ~y~~~~-----------~~vDvV~~Dva  211 (293)
T PTZ00146        195 KYRMLV-----------PMVDVIFADVA  211 (293)
T ss_pred             hhhccc-----------CCCCEEEEeCC
Confidence             11111           24789999875

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.59  E-value=3.8e-07  Score=78.47  Aligned_cols=69  Identities=10%  Similarity=-0.037  Sum_probs=53.0

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeEEEEcccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVHFHLGDVM  109 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~vi~~D~~  109 (240)
                      .+..+...++.+|||+|||.|.-+..|+.++ .+|+|||+++..++.+......             ...+++++++|+.
T Consensus        29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~  107 (218)
T PRK13255         29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF  107 (218)
T ss_pred             HHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence            3333444567899999999999999999986 6999999999999976431100             1257899999999


Q ss_pred             ccc
Q psy17126        110 SFT  112 (240)
Q Consensus       110 ~~~  112 (240)
                      ++.
T Consensus       108 ~l~  110 (218)
T PRK13255        108 ALT  110 (218)
T ss_pred             CCC
Confidence            875

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.58  E-value=3.5e-07  Score=86.51  Aligned_cols=73  Identities=21%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             CCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHHH--hcCCCCeEEEEcccccccccccchhhhccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDMLA--QASPCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~~--~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      +..|+|||||+|.|....++.+     +.+|+|||.++.++..+++..  ..++++|+++++|+.++.++.         
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe---------  257 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE---------  257 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS---------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC---------
Confidence            5789999999999998777653     369999999999888776642  334588999999999988764         


Q ss_pred             ccCCCCceEEEecC
Q psy17126        125 WSEGLPGIRIIGNL  138 (240)
Q Consensus       125 ~~~~~~~~~VvsNl  138 (240)
                           +.|+|||-+
T Consensus       258 -----kvDIIVSEl  266 (448)
T PF05185_consen  258 -----KVDIIVSEL  266 (448)
T ss_dssp             ------EEEEEE--
T ss_pred             -----ceeEEEEec
Confidence                 468888755

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1499|consensus

Probab=98.58  E-value=1.4e-07  Score=85.39  Aligned_cols=75  Identities=12%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      +-.+++|||+|||||.|+...|+.|+.+|+|||-+.-+ +.+++.....  .+.+++++|.+.++.++  .         
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~---------  125 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP--V---------  125 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC--c---------
Confidence            35789999999999999999999988999999987544 7777765443  36699999999998776  1         


Q ss_pred             CCCCceEEEec
Q psy17126        127 EGLPGIRIIGN  137 (240)
Q Consensus       127 ~~~~~~~VvsN  137 (240)
                        ++.|+|||-
T Consensus       126 --eKVDiIvSE  134 (346)
T KOG1499|consen  126 --EKVDIIVSE  134 (346)
T ss_pred             --cceeEEeeh
Confidence              356888875

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.57  E-value=2.7e-07  Score=73.64  Aligned_cols=49  Identities=22%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC   89 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~   89 (240)
                      .+.+.+... ..++.+|||||||+|.++..++..+ .+|+|+|+++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-FEVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-SEEEEEESSHHHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHhh
Confidence            333433443 4678999999999999999998875 599999999999877

...

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.57  E-value=3.6e-07  Score=76.27  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             cCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccc
Q psy17126         47 AGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        47 ~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      ..+.++++|||+|||||.++..++.+.  ..+|+|+|+++.+         . ..+++++++|+.+.+......+    .
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-~~~i~~~~~d~~~~~~~~~l~~----~   93 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-IENVDFIRGDFTDEEVLNKIRE----R   93 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-CCCceEEEeeCCChhHHHHHHH----H
Confidence            345789999999999999999998864  2579999999865         1 1468899999876432110000    0


Q ss_pred             ccCCCCceEEEecC
Q psy17126        125 WSEGLPGIRIIGNL  138 (240)
Q Consensus       125 ~~~~~~~~~VvsNl  138 (240)
                      . ..+.+|+|++|.
T Consensus        94 ~-~~~~~D~V~~~~  106 (188)
T TIGR00438        94 V-GDDKVDVVMSDA  106 (188)
T ss_pred             h-CCCCccEEEcCC
Confidence            0 113689999885

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.56  E-value=1.3e-07  Score=80.56  Aligned_cols=82  Identities=13%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      ....+|||||||+|.-|..++...  .++|+++|+++...+.++++++..+  ++++++.||+.++ ++.+....     
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-l~~l~~~~-----  117 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-LPELANDG-----  117 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH-HHHHHHTT-----
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh-HHHHHhcc-----
Confidence            345799999999999999999853  3799999999999999999877654  7899999999874 33332210     


Q ss_pred             cCCCCceEEEecC
Q psy17126        126 SEGLPGIRIIGNL  138 (240)
Q Consensus       126 ~~~~~~~~VvsNl  138 (240)
                       ..++||.|+-.-
T Consensus       118 -~~~~fD~VFiDa  129 (205)
T PF01596_consen  118 -EEGQFDFVFIDA  129 (205)
T ss_dssp             -TTTSEEEEEEES
T ss_pred             -CCCceeEEEEcc
Confidence             013689888654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=98.54  E-value=3.8e-07  Score=81.76  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHh--hC-CCeEEEEeCCcchHHHHHHHHhc-C--CCCeEEEEccccccccccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILN--RR-PARLVLIEKDPRFTPCLDMLAQA-S--PCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~--~~-~~~V~avEid~~m~~~l~~~~~~-~--~~~v~vi~~D~~~~~~~~~  116 (240)
                      ++......+.++|+|||||+|.+|..++.  .. .++++++|+|+++++.+++.+.. .  .++++|+.+|+.+.. ..+
T Consensus       115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l  193 (296)
T PLN03075        115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESL  193 (296)
T ss_pred             HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-ccc
Confidence            33333334678999999999988765544  22 36899999999999999997743 2  367999999998752 111


Q ss_pred             chhhhcccccCCCCceEEEec
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsN  137 (240)
                                  +.||+|+..
T Consensus       194 ------------~~FDlVF~~  202 (296)
T PLN03075        194 ------------KEYDVVFLA  202 (296)
T ss_pred             ------------CCcCEEEEe
Confidence                        357888887

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.52  E-value=4.3e-07  Score=78.70  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=40.9

Q ss_pred             HHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126         40 TDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC   89 (240)
Q Consensus        40 ~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~   89 (240)
                      +..+++..++ .++.+|||+|||||.+|..+++.++.+|+|||+++.|+..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3445555554 3678999999999999999999877899999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.51  E-value=7.1e-07  Score=82.89  Aligned_cols=109  Identities=9%  Similarity=0.026  Sum_probs=78.0

Q ss_pred             cccCCHHHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      |--.++.+...+++.+... ++.+|||++||+|.++..++... ..+|+++|+++..++.+++|++..+ .+++++++|+
T Consensus        37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da  116 (382)
T PRK04338         37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA  116 (382)
T ss_pred             cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence            3334555666666655432 35689999999999999998763 3589999999999999999876543 5577899998


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      .++- ..   .         ..+|+|+.||| ....+.+...+...
T Consensus       117 ~~~l-~~---~---------~~fD~V~lDP~-Gs~~~~l~~al~~~  148 (382)
T PRK04338        117 NALL-HE---E---------RKFDVVDIDPF-GSPAPFLDSAIRSV  148 (382)
T ss_pred             HHHH-hh---c---------CCCCEEEECCC-CCcHHHHHHHHHHh
Confidence            6531 11   1         35899999975 66567766645543

>PRK03612 spermidine synthase; Provisional

Probab=98.47  E-value=3.1e-07  Score=88.47  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHH--Hhc-----C-CCCeEEEEcccccccccccchhh
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDML--AQA-----S-PCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~--~~~-----~-~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      .+.++|||||||+|.+++.++++.. .+|++||+|+++++.++++  ...     . +++++++.+|+.++- ...    
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-~~~----  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-RKL----  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH-HhC----
Confidence            4567999999999999999998754 6999999999999999973  211     1 268999999998641 111    


Q ss_pred             hcccccCCCCceEEEecCCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~  141 (240)
                             .+++|+|++|+|..
T Consensus       371 -------~~~fDvIi~D~~~~  384 (521)
T PRK03612        371 -------AEKFDVIIVDLPDP  384 (521)
T ss_pred             -------CCCCCEEEEeCCCC
Confidence                   13689999998864

>PLN02476 O-methyltransferase

Probab=98.43  E-value=1.2e-06  Score=77.94  Aligned_cols=100  Identities=14%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ..+.+...+.+.-.+...+..+|||||+|+|..|..++...  .++|+++|.++...+.++++.+..+  ++++++.||+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            45667666666555666678899999999999999999753  3689999999999999999887654  6899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .+. ++.+..+      ...++||.||-..+
T Consensus       180 ~e~-L~~l~~~------~~~~~FD~VFIDa~  203 (278)
T PLN02476        180 AES-LKSMIQN------GEGSSYDFAFVDAD  203 (278)
T ss_pred             HHH-HHHHHhc------ccCCCCCEEEECCC
Confidence            874 2322110      01146888887655

>PLN02366 spermidine synthase

Probab=98.41  E-value=1.4e-06  Score=78.78  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             HHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccc
Q psy17126         39 LTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVM  109 (240)
Q Consensus        39 i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~  109 (240)
                      ....++..+.   ..+..+||+||||.|.+++.+++.. ..+|+.||+|+.+++.+++....    + .++++++.+|+.
T Consensus        76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~  155 (308)
T PLN02366         76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV  155 (308)
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence            4445554432   2456899999999999999999874 36899999999999999986543    1 368999999987


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      ++- .+. +         .+++|+||..++-
T Consensus       156 ~~l-~~~-~---------~~~yDvIi~D~~d  175 (308)
T PLN02366        156 EFL-KNA-P---------EGTYDAIIVDSSD  175 (308)
T ss_pred             HHH-hhc-c---------CCCCCEEEEcCCC
Confidence            641 111 0         1368999998753

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.40  E-value=1.2e-06  Score=83.83  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             HHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHH
Q psy17126         16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCL   90 (240)
Q Consensus        16 ~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l   90 (240)
                      .+++.+--...++.|| |.+++.+++-|++.+.+.+..+|.|..||||.+-....+..     ...++|.|+++.....+
T Consensus       152 ~ll~~fa~~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~  230 (489)
T COG0286         152 YLLRKFAEAEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA  230 (489)
T ss_pred             HHHHHHHHhcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHH
Confidence            3455655556677788 88999999999999988788899999999999876665542     15699999999999998


Q ss_pred             HHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         91 DMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        91 ~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      +.++--.+  .++.+.++|-+.-+...-  .      .+.+.+|.|++||||+
T Consensus       231 ~mN~~lhgi~~~~~i~~~dtl~~~~~~~--~------~~~~~~D~viaNPPf~  275 (489)
T COG0286         231 KMNLILHGIEGDANIRHGDTLSNPKHDD--K------DDKGKFDFVIANPPFS  275 (489)
T ss_pred             HHHHHHhCCCccccccccccccCCcccc--c------CCccceeEEEeCCCCC
Confidence            88653222  245677777766553310  0      0124689999999998

>TIGR00417 speE spermidine synthase

Probab=98.40  E-value=1.5e-06  Score=76.97  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=61.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      ...+||+||||+|.++..++++. ..+|+++|+|+.+++.+++.....     .++++++.+|+.++- ...        
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l-~~~--------  142 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL-ADT--------  142 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-HhC--------
Confidence            45699999999999999998875 468999999999999998865332     257889998886531 110        


Q ss_pred             ccCCCCceEEEecCCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~I  142 (240)
                         .+++|+||.+.+...
T Consensus       143 ---~~~yDvIi~D~~~~~  157 (270)
T TIGR00417       143 ---ENTFDVIIVDSTDPV  157 (270)
T ss_pred             ---CCCccEEEEeCCCCC
Confidence               146899999987443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2915|consensus

Probab=98.39  E-value=5.3e-06  Score=73.08  Aligned_cols=111  Identities=18%  Similarity=0.068  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~~~~  115 (240)
                      +..|+..+.+.||.+|+|-|+|+|+++-.+++..+  ++++.+|....-.+.+.+..+.  .++++++++.|+..-.+..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            56688888999999999999999999999998742  7999999998888877765443  3589999999998865542


Q ss_pred             cchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcccccccc
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAISENLLFP  161 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~~~~~~~  161 (240)
                      .           ...+|.|+-.|| .-.+-|-..+.+.+...++|..
T Consensus       174 k-----------s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  174 K-----------SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF  209 (314)
T ss_pred             c-----------ccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence            1           146799999998 4567788888887766555543

>KOG1541|consensus

Probab=98.36  E-value=1.3e-06  Score=74.91  Aligned_cols=79  Identities=11%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             hhccCcc---ccCCHHHHHHHHHHcCCCC--CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         26 LKQLSQN---FLFEPRLTDKIVRNAGTIT--GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        26 ~k~~gQ~---fl~d~~i~~~iv~~~~~~~--~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      ..+|.||   -.++..+..+-++.+.+..  ..-|||||||||--+..|...+ ...+|||+|+.|++.+.+.  ...  
T Consensus        20 A~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~--e~e--   94 (270)
T KOG1541|consen   20 APKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVER--ELE--   94 (270)
T ss_pred             hhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHh--hhh--
Confidence            4456666   3566778888888776654  6789999999999999998875 7899999999999999862  221  


Q ss_pred             eEEEEcccc
Q psy17126        101 VHFHLGDVM  109 (240)
Q Consensus       101 v~vi~~D~~  109 (240)
                      -.++.+|+-
T Consensus        95 gdlil~DMG  103 (270)
T KOG1541|consen   95 GDLILCDMG  103 (270)
T ss_pred             cCeeeeecC
Confidence            236677765

>KOG1271|consensus

Probab=98.35  E-value=1.7e-06  Score=72.25  Aligned_cols=74  Identities=12%  Similarity=0.182  Sum_probs=57.0

Q ss_pred             HHHHHHHHcC---CC-CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         39 LTDKIVRNAG---TI-TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        39 i~~~iv~~~~---~~-~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      +++.++....   +. ..++|||+|||.|.+...|++.+ ...++|||.++..++.|+..+++.+  +.+++.+.|+.+-
T Consensus        51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence            4444444433   33 33599999999999999999986 4569999999999999988766543  4499999999875


Q ss_pred             c
Q psy17126        112 T  112 (240)
Q Consensus       112 ~  112 (240)
                      +
T Consensus       131 ~  131 (227)
T KOG1271|consen  131 D  131 (227)
T ss_pred             c
Confidence            3

>PRK01581 speE spermidine synthase; Validated

Probab=98.35  E-value=2.5e-06  Score=78.49  Aligned_cols=80  Identities=21%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHH--H-----hcC-CCCeEEEEcccccccccccchhh
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDML--A-----QAS-PCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~--~-----~~~-~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      ....+||+||||+|..++.+++.. ..+|++||+|++|++.+++.  .     ..+ .++++++.+|+.++- ...    
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL-~~~----  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL-SSP----  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH-Hhc----
Confidence            345799999999999999999864 37999999999999999862  1     112 378999999998742 111    


Q ss_pred             hcccccCCCCceEEEecCCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~  141 (240)
                             ...+|+||.++|-.
T Consensus       224 -------~~~YDVIIvDl~DP  237 (374)
T PRK01581        224 -------SSLYDVIIIDFPDP  237 (374)
T ss_pred             -------CCCccEEEEcCCCc
Confidence                   13689999998753

>KOG2187|consensus

Probab=98.35  E-value=1.2e-06  Score=82.91  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=81.5

Q ss_pred             ccCccccCCHHHHHH----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeE
Q psy17126         28 QLSQNFLFEPRLTDK----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVH  102 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~  102 (240)
                      +=|-.|-++...++.    |=+++++..+..++|+.||||.++..+++. ..+|+|||++++.++-|+.++...+ .|.+
T Consensus       356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~  434 (534)
T KOG2187|consen  356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNAT  434 (534)
T ss_pred             CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcccee
Confidence            333444455544433    445678888899999999999999999987 5899999999999999999876655 8999


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCC-CCHHHHHHHHH
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQ  152 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~  152 (240)
                      |++|-++++ ++.++..    .+  +..-.++|.++|-. +....|..+..
T Consensus       435 Fi~gqaE~~-~~sl~~~----~~--~~~~~v~iiDPpR~Glh~~~ik~l~~  478 (534)
T KOG2187|consen  435 FIVGQAEDL-FPSLLTP----CC--DSETLVAIIDPPRKGLHMKVIKALRA  478 (534)
T ss_pred             eeecchhhc-cchhccc----CC--CCCceEEEECCCcccccHHHHHHHHh
Confidence            999977765 3333221    00  01235888999964 44444433333

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.34  E-value=5.6e-07  Score=76.79  Aligned_cols=91  Identities=19%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             HhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHh---
Q psy17126         20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQ---   95 (240)
Q Consensus        20 ~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~---   95 (240)
                      .|.-....-||-   +.+..+..|++.+++.+++..+|||||.|......+.. ++.+++|||+.+.....++...+   
T Consensus        14 ~y~~~s~~~YGE---i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~   90 (205)
T PF08123_consen   14 KYKSFSSETYGE---ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELK   90 (205)
T ss_dssp             CSTTTCCCCGGG---CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcceee---cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHH
Confidence            333333444655   46788899999999999999999999999998777654 35679999999998877765321   


Q ss_pred             ----cC---CCCeEEEEcccccccc
Q psy17126         96 ----AS---PCPVHFHLGDVMSFTM  113 (240)
Q Consensus        96 ----~~---~~~v~vi~~D~~~~~~  113 (240)
                          .+   ..++++.++|+.+.++
T Consensus        91 ~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   91 KRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             HHHHHCTB---EEEEECS-TTTHHH
T ss_pred             HHHHHhhcccccceeeccCccccHh
Confidence                12   2568899999988664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.33  E-value=1.6e-06  Score=73.30  Aligned_cols=77  Identities=23%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             CEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      ..+||||||.|.++..+|...+ ..++|||+....+..+..++...+ .|+.++++|+..+ +..+++.         +.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~---------~~   88 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPP---------GS   88 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTT---------TS
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccC---------Cc
Confidence            4899999999999999998754 789999999999988877655434 8999999999874 3333321         35


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      .+.|.-|-|
T Consensus        89 v~~i~i~FP   97 (195)
T PF02390_consen   89 VDRIYINFP   97 (195)
T ss_dssp             EEEEEEES-
T ss_pred             hheEEEeCC
Confidence            666776665

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=79.44  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ++++..  .+|.+|+|.=+|-|.+|..+|+.+..+|+|+|++|..++.+++|+....  +.+..++||+.++...-    
T Consensus       181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----  254 (341)
T COG2520         181 RVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----  254 (341)
T ss_pred             HHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----
Confidence            344444  4599999999999999999999875569999999999999999876543  55899999999875331    


Q ss_pred             hhcccccCCCCceEEEecCCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                               +.+|.|+.|+|..
T Consensus       255 ---------~~aDrIim~~p~~  267 (341)
T COG2520         255 ---------GVADRIIMGLPKS  267 (341)
T ss_pred             ---------ccCCEEEeCCCCc
Confidence                     2479999999973

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.27  E-value=3.6e-06  Score=69.70  Aligned_cols=61  Identities=21%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMS  110 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~  110 (240)
                      ...+.+|||+|||+|..+..++.. ++.+|++.|.++ .++.++.+++..    ..++++..-|+-+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence            457899999999999999999987 457999999999 889998887653    2567777777654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=5.4e-06  Score=74.31  Aligned_cols=117  Identities=14%  Similarity=0.202  Sum_probs=74.7

Q ss_pred             HHHHHHHhCchhhhc---cCccccCCHHHH-----HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcc
Q psy17126         14 IRDIIKLYKLRALKQ---LSQNFLFEPRLT-----DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR   85 (240)
Q Consensus        14 ~~~~~~~~~~~~~k~---~gQ~fl~d~~i~-----~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~   85 (240)
                      +++.++......|--   +|-  .+|.++.     +.+...+..-.|.+|||||||.|..+..++.+++..|+|+|.+..
T Consensus        72 l~~~l~~l~PWRKGPf~l~gi--~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l  149 (315)
T PF08003_consen   72 LEQLLKALMPWRKGPFSLFGI--HIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL  149 (315)
T ss_pred             HHHHHHhhCCcccCCcccCCE--eecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence            455566555443322   343  2455543     446666655679999999999999999999998889999999988


Q ss_pred             hHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEe-cCCCCCCHHH
Q psy17126         86 FTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPL  146 (240)
Q Consensus        86 m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~i  146 (240)
                      ..-..+-...-.+  ..+..+.--+++++.  .            +.||.|++ ..=|+..+|+
T Consensus       150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~--~------------~~FDtVF~MGVLYHrr~Pl  199 (315)
T PF08003_consen  150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPN--L------------GAFDTVFSMGVLYHRRSPL  199 (315)
T ss_pred             HHHHHHHHHHHhCCCccEEEcCcchhhccc--c------------CCcCEEEEeeehhccCCHH
Confidence            7765443222222  223333223333321  1            35787766 5669999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.24  E-value=5.2e-06  Score=71.43  Aligned_cols=89  Identities=16%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEE-cccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHL-GDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~-~D~~~~  111 (240)
                      +.....+...+......+|||||++.|.-|..++...+  +++|++|+++++++.|+++.++.+  +++.++. +|+++.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            55555555555666788999999999999999998643  789999999999999999987765  6688998 588764


Q ss_pred             cccccchhhhcccccCCCCceEEEe
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIG  136 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~Vvs  136 (240)
                       ++...          .++||.||-
T Consensus       125 -l~~~~----------~~~fDliFI  138 (219)
T COG4122         125 -LSRLL----------DGSFDLVFI  138 (219)
T ss_pred             -HHhcc----------CCCccEEEE
Confidence             22211          146888885

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.24  E-value=5.7e-07  Score=77.46  Aligned_cols=75  Identities=13%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             HHHHHHHh----CchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126         14 IRDIIKLY----KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC   89 (240)
Q Consensus        14 ~~~~~~~~----~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~   89 (240)
                      +.+++..|    ...--.++|..   =|..+..++..++..+-.++||+|||||-.+..|-.+ ..+++|||+|.+|++.
T Consensus        87 Ve~LFD~~Ae~Fd~~LVdkL~Y~---vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~k  162 (287)
T COG4976          87 VETLFDQYAERFDHILVDKLGYS---VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAK  162 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCc---cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHH
Confidence            45555443    33333344432   3667777888888777899999999999999999887 5799999999999999


Q ss_pred             HHH
Q psy17126         90 LDM   92 (240)
Q Consensus        90 l~~   92 (240)
                      +.+
T Consensus       163 A~e  165 (287)
T COG4976         163 AHE  165 (287)
T ss_pred             HHh
Confidence            876

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.24  E-value=3.4e-06  Score=78.41  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~  109 (240)
                      |..|.....+.+...  -.|++||++-|=||.++...+..|+.+||+||+|...++.+++|.+-.+   .++.++++|+.
T Consensus       201 fFlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         201 FFLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             eeHHhHHHHHHHhhh--ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            344444444444332  2389999999999999999999877799999999999999999876433   56899999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHH
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQ  152 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~  152 (240)
                      ++ +...-.        .+.+||+||-.|| |.-+..-+++...
T Consensus       279 ~~-l~~~~~--------~g~~fDlIilDPPsF~r~k~~~~~~~r  313 (393)
T COG1092         279 KW-LRKAER--------RGEKFDLIILDPPSFARSKKQEFSAQR  313 (393)
T ss_pred             HH-HHHHHh--------cCCcccEEEECCcccccCcccchhHHH
Confidence            75 332211        1247999999999 5555544544433

>KOG2730|consensus

Probab=98.23  E-value=1.4e-06  Score=74.61  Aligned_cols=109  Identities=13%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             ccccCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcc
Q psy17126         31 QNFLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGD  107 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D  107 (240)
                      |.-.+...++..|+..... .....|+|.-||-|.-|...+.++ ..|++||+||.-+..+++|++-++  +++++++||
T Consensus        73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD  151 (263)
T KOG2730|consen   73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD  151 (263)
T ss_pred             eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence            4334445566666554422 256789999999999999999986 699999999999999999987665  899999999


Q ss_pred             ccccccccc-chhhhcccccCCCCceEEEecCCCCCCHHHHHHH
Q psy17126        108 VMSFTMQNM-FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW  150 (240)
Q Consensus       108 ~~~~~~~~~-~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~l  150 (240)
                      ++++- +.+ +++         ...+.|+..+|+.-++-+.-+.
T Consensus       152 ~ld~~-~~lq~~K---------~~~~~vf~sppwggp~y~~~~~  185 (263)
T KOG2730|consen  152 FLDLA-SKLKADK---------IKYDCVFLSPPWGGPSYLRADV  185 (263)
T ss_pred             HHHHH-HHHhhhh---------heeeeeecCCCCCCcchhhhhh
Confidence            98863 222 111         3467899999987776654443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.22  E-value=1.1e-06  Score=75.95  Aligned_cols=91  Identities=20%  Similarity=0.291  Sum_probs=71.1

Q ss_pred             HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH--hcC-CCCeEEEEcccccccccccchhhh
Q psy17126         45 RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA--QAS-PCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~--~~~-~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      +.+.++.|.+|||.+.|.|..++..+++++.+|+.||.|+..++.+.-|-  .+. ..+++++.||+.++- +++ +   
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-~~~-~---  202 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-KDF-D---  202 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-hcC-C---
Confidence            44566789999999999999999999998679999999999998876531  111 246899999998752 222 1   


Q ss_pred             cccccCCCCceEEEecCC-CCCCHHH
Q psy17126        122 RRDWSEGLPGIRIIGNLP-FNVSTPL  146 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlP-Y~Iss~i  146 (240)
                            ...+|+||..|| |++++.+
T Consensus       203 ------D~sfDaIiHDPPRfS~AgeL  222 (287)
T COG2521         203 ------DESFDAIIHDPPRFSLAGEL  222 (287)
T ss_pred             ------ccccceEeeCCCccchhhhH
Confidence                  146899999999 8888855

>KOG4300|consensus

Probab=98.21  E-value=2.8e-06  Score=72.22  Aligned_cols=81  Identities=17%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeE-EEEccccccc-ccccchhhhc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVH-FHLGDVMSFT-MQNMFSEDRR  122 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~-vi~~D~~~~~-~~~~~~~~~~  122 (240)
                      .++......|||||||||.--...--....+||++|.++.|-+.+.+.+++. +.++. +++++.++++ +++       
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d-------  143 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD-------  143 (252)
T ss_pred             HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc-------
Confidence            3333333468999999999865554322369999999999999998866543 36677 9999999875 332       


Q ss_pred             ccccCCCCceEEEecCC
Q psy17126        123 RDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlP  139 (240)
                            +++|.||+-+=
T Consensus       144 ------~s~DtVV~Tlv  154 (252)
T KOG4300|consen  144 ------GSYDTVVCTLV  154 (252)
T ss_pred             ------CCeeeEEEEEE
Confidence                  46888888653

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.14  E-value=5.9e-06  Score=71.58  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCC-CeEEEEcccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPC-PVHFHLGDVMSF  111 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~-~v~vi~~D~~~~  111 (240)
                      ...+||||||.|.++..+|.+.+ ..++|||+....+..+.+.+.+.+- |+.++++|+..+
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~  110 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV  110 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence            35899999999999999999865 6899999999888888777766665 999999999876

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.12  E-value=1.7e-05  Score=63.43  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=47.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHh-----hCCCeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILN-----RRPARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMS  110 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~-----~~~~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~  110 (240)
                      .+..+|+|+|||.|.|+..|+.     ....+|+|||.++.+++.+.++.+...    .++++..+++..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            5678999999999999999998     544799999999999998887665433    345555555543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.12  E-value=7.4e-06  Score=64.74  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      +|+|||||.|.++..++..++ .+|+++|.++.+.+.++++.+..+ .++++++..+.+-
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence            489999999999999998864 489999999999999999876433 5688888777653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK10742 putative methyltransferase; Provisional

Probab=98.11  E-value=1.3e-05  Score=70.11  Aligned_cols=89  Identities=11%  Similarity=0.148  Sum_probs=72.6

Q ss_pred             HHHHHHcCCCCCC--EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC------C----CCeEEEEccc
Q psy17126         41 DKIVRNAGTITGN--EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS------P----CPVHFHLGDV  108 (240)
Q Consensus        41 ~~iv~~~~~~~~~--~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~------~----~~v~vi~~D~  108 (240)
                      +.|+++++++++.  +|||.=+|+|..+..++.++ ++|++||.++.+...++++++..      .    .+++++++|.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            4578888988888  99999999999999999997 57999999999999998876552      1    4689999998


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .++ +...           ...+|+|.--|||-.
T Consensus       155 ~~~-L~~~-----------~~~fDVVYlDPMfp~  176 (250)
T PRK10742        155 LTA-LTDI-----------TPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHH-HhhC-----------CCCCcEEEECCCCCC
Confidence            775 2221           125899999999965

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.09  E-value=2.5e-05  Score=72.41  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=71.3

Q ss_pred             CEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      -+|||+.||+|.++..++.+  +..+|+++|+++..++.+++|++... .+++++++|+.++- ...           ..
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l-~~~-----------~~  113 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL-RYR-----------NR  113 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH-HHh-----------CC
Confidence            58999999999999999987  45799999999999999999886543 46899999997652 111           13


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                      ++|+|+-+| |...++.+...+....
T Consensus       114 ~fDvIdlDP-fGs~~~fld~al~~~~  138 (374)
T TIGR00308       114 KFHVIDIDP-FGTPAPFVDSAIQASA  138 (374)
T ss_pred             CCCEEEeCC-CCCcHHHHHHHHHhcc
Confidence            589999887 7776788877776543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.09  E-value=1.1e-05  Score=69.46  Aligned_cols=77  Identities=14%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeE
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVH  102 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~  102 (240)
                      ++.+.+. ++.+...++.+||..|||.|.-...|+.++ .+|+|||+++..++.+.+....             ..++++
T Consensus        23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  100 (218)
T PF05724_consen   23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT  100 (218)
T ss_dssp             THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred             CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence            4444444 444666778899999999999999999986 6999999999999987432110             014689


Q ss_pred             EEEccccccccc
Q psy17126        103 FHLGDVMSFTMQ  114 (240)
Q Consensus       103 vi~~D~~~~~~~  114 (240)
                      ++++|+.+++..
T Consensus       101 ~~~gDfF~l~~~  112 (218)
T PF05724_consen  101 IYCGDFFELPPE  112 (218)
T ss_dssp             EEES-TTTGGGS
T ss_pred             EEEcccccCChh
Confidence            999999987643

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.09  E-value=1.9e-05  Score=69.25  Aligned_cols=78  Identities=9%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+.+...+.+...+......+|||||+++|.-|..++...  .++|+++|.++.....++++.+..+  +++++++||+.
T Consensus        62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            3445555444444444556799999999999999998753  3699999999999999999876654  88999999998


Q ss_pred             cc
Q psy17126        110 SF  111 (240)
Q Consensus       110 ~~  111 (240)
                      ++
T Consensus       142 e~  143 (247)
T PLN02589        142 PV  143 (247)
T ss_pred             HH
Confidence            74

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.08  E-value=1.3e-05  Score=71.59  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=65.9

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~  109 (240)
                      |..|..-.++.++..  ..+.+||++=|=||+++...+..++.+|++||.|...++.+++|+...+   .+++++.+|+.
T Consensus       107 lFlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  107 LFLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             S-GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             EcHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            344444444444443  3578999999999999999888776799999999999999999876433   57999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ++ +..+-.         .++||+||..||
T Consensus       185 ~~-l~~~~~---------~~~fD~IIlDPP  204 (286)
T PF10672_consen  185 KF-LKRLKK---------GGRFDLIILDPP  204 (286)
T ss_dssp             HH-HHHHHH---------TT-EEEEEE--S
T ss_pred             HH-HHHHhc---------CCCCCEEEECCC
Confidence            74 222211         257999999999

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.06  E-value=3.6e-05  Score=66.63  Aligned_cols=77  Identities=8%  Similarity=-0.026  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-------------cCCCCe
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-------------ASPCPV  101 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-------------~~~~~v  101 (240)
                      .++.+.+.+-+ +...++.+||..|||.|.-...|+.+| .+|+|||+|+..++.+.+...             ..+.++
T Consensus        28 pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i  105 (226)
T PRK13256         28 PNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI  105 (226)
T ss_pred             CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence            45555565533 444567899999999999999999986 689999999999998754210             013579


Q ss_pred             EEEEcccccccc
Q psy17126        102 HFHLGDVMSFTM  113 (240)
Q Consensus       102 ~vi~~D~~~~~~  113 (240)
                      +++++|+.+++.
T Consensus       106 ~~~~gD~f~l~~  117 (226)
T PRK13256        106 EIYVADIFNLPK  117 (226)
T ss_pred             EEEEccCcCCCc
Confidence            999999998753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.01  E-value=3e-05  Score=73.91  Aligned_cols=88  Identities=17%  Similarity=0.049  Sum_probs=69.8

Q ss_pred             HHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126         41 DKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        41 ~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~  115 (240)
                      ...+..+  .+.++++|||+|||+|.=|..++...  .+.|+|+|+++.-+..+++++++++ .|+.+.+.|..++.  .
T Consensus       101 ~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~--~  178 (470)
T PRK11933        101 MLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG--A  178 (470)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--h
Confidence            3334445  67899999999999999999999864  3689999999999999999988876 78899999987642  1


Q ss_pred             cchhhhcccccCCCCceEEEecCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .++          ..||.|+-..|=
T Consensus       179 ~~~----------~~fD~ILvDaPC  193 (470)
T PRK11933        179 ALP----------ETFDAILLDAPC  193 (470)
T ss_pred             hch----------hhcCeEEEcCCC
Confidence            111          257888888873

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.00  E-value=2.5e-05  Score=70.39  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      ||.+-|-+++.+++.+.+.++..++|.=+|.|.-|..+++.. .++|+|+|.|+.++..+++++..+.++++++++++.+
T Consensus         1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            567778899999999998899999999999999999999874 3799999999999999998776666789999999987


Q ss_pred             cc
Q psy17126        111 FT  112 (240)
Q Consensus       111 ~~  112 (240)
                      +.
T Consensus        81 l~   82 (305)
T TIGR00006        81 FF   82 (305)
T ss_pred             HH
Confidence            54

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.97  E-value=3.8e-05  Score=68.95  Aligned_cols=90  Identities=11%  Similarity=0.035  Sum_probs=48.3

Q ss_pred             CCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC---CCCeEEEEcccccccccccchhhhcccccC
Q psy17126         52 GNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~---~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .-++||||+|.-.+--.|..+ ..=+++|.|+|+..++.|+++.+..   .++++++...-...=+..+...        
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~--------  174 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQP--------  174 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---------
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcc--------
Confidence            458999999998765444433 2369999999999999999987654   3789888664322112222111        


Q ss_pred             CCCceEEEecCCCCCCHHHHHH
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIK  149 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~  149 (240)
                      ...+|.+++||||+-|......
T Consensus       175 ~e~~dftmCNPPFy~s~~e~~~  196 (299)
T PF05971_consen  175 NERFDFTMCNPPFYSSQEEAEA  196 (299)
T ss_dssp             -S-EEEEEE-----SS------
T ss_pred             cceeeEEecCCccccChhhhcc
Confidence            1368999999999998866543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2671|consensus

Probab=97.94  E-value=1.2e-05  Score=73.00  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             HHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHH---
Q psy17126         14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL---   90 (240)
Q Consensus        14 ~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l---   90 (240)
                      -|++++.|.++.+.-.|- --.|..+.=-++..+.+.+|+.|.|.=.|||++....+.-| +.|+|-|||-+|+...   
T Consensus       172 ~R~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~  249 (421)
T KOG2671|consen  172 QRELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGE  249 (421)
T ss_pred             hHhHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCC
Confidence            377899999987776665 66788877777788888999999999999999999988875 7999999999998732   


Q ss_pred             ----HHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126         91 ----DMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus        91 ----~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                          +.|.+.++   .=+.++.+|+.+-++            .++..+|.||+.|||.|--.
T Consensus       250 ~~si~aNFkQYg~~~~fldvl~~D~sn~~~------------rsn~~fDaIvcDPPYGVRe~  299 (421)
T KOG2671|consen  250 DESIKANFKQYGSSSQFLDVLTADFSNPPL------------RSNLKFDAIVCDPPYGVREG  299 (421)
T ss_pred             CcchhHhHHHhCCcchhhheeeecccCcch------------hhcceeeEEEeCCCcchhhh
Confidence                22333332   124556666665443            33457999999999988543

>PLN02823 spermine synthase

Probab=97.92  E-value=5e-05  Score=69.43  Aligned_cols=77  Identities=18%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      ...+||.||+|.|.+++.+++.. ..+|++||+|+.+++.+++.....     .++++++.+|+.++= ...        
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~--------  173 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKR--------  173 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhC--------
Confidence            45789999999999999998853 468999999999999999865321     378999999998741 211        


Q ss_pred             ccCCCCceEEEecCC
Q psy17126        125 WSEGLPGIRIIGNLP  139 (240)
Q Consensus       125 ~~~~~~~~~VvsNlP  139 (240)
                         .+++|+||..++
T Consensus       174 ---~~~yDvIi~D~~  185 (336)
T PLN02823        174 ---DEKFDVIIGDLA  185 (336)
T ss_pred             ---CCCccEEEecCC
Confidence               146899998864

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.87  E-value=0.00013  Score=63.00  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=70.5

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ..++......+..+|+|||.|+|.++..++++.+ .+++.+|+ |..++.+++     .++++++.||+. -+++. .  
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~-~--  159 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV-A--  159 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS-E--
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc-c--
Confidence            3455566777778999999999999999999864 68999998 788877775     478999999998 44443 1  


Q ss_pred             hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                                 ..++++|.=.+-+.....++|++...
T Consensus       160 -----------D~~~l~~vLh~~~d~~~~~iL~~~~~  185 (241)
T PF00891_consen  160 -----------DVYLLRHVLHDWSDEDCVKILRNAAA  185 (241)
T ss_dssp             -----------SEEEEESSGGGS-HHHHHHHHHHHHH
T ss_pred             -----------cceeeehhhhhcchHHHHHHHHHHHH
Confidence                       25677888777788888888876554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.85  E-value=8e-05  Score=67.97  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=74.3

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ..+|.++|||||++|..|..|++++ .+|+|||..+ |.+.+.     ..++|+.+.+|..++...             .
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~p~-------------~  268 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFRPP-------------R  268 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechh-cCHhhh-----CCCCEEEEeccCcccCCC-------------C
Confidence            3588999999999999999999996 5999999654 433332     147899999998775421             1


Q ss_pred             CCceEEEecCCCC--CCHHHHHHHHHhccc--cccccchh---h--------hhHHHHHHHcCCCCCCCCCCC
Q psy17126        129 LPGIRIIGNLPFN--VSTPLIIKWIQAISE--NLLFPKHK---R--------QLVVSLLERACVKPILRPYQL  186 (240)
Q Consensus       129 ~~~~~VvsNlPY~--Iss~il~~ll~~~~~--~~~~~~~~---~--------~~~~~~l~~~gi~~~~R~e~l  186 (240)
                      +++|.||+.+--+  -...++.+|+...-.  ..|..++-   +        +.....+.+.|+....|+.+|
T Consensus       269 ~~vDwvVcDmve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL  341 (357)
T PRK11760        269 KNVDWLVCDMVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL  341 (357)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee
Confidence            3578888876321  223455666654311  11111111   1        234445667787766666443

>KOG1661|consensus

Probab=97.83  E-value=7.2e-05  Score=63.75  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhC-C--CeEEEEeCCcchHHHHHHHHhcC-----------
Q psy17126         34 LFEPRLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRR-P--ARLVLIEKDPRFTPCLDMLAQAS-----------   97 (240)
Q Consensus        34 l~d~~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~-~--~~V~avEid~~m~~~l~~~~~~~-----------   97 (240)
                      +.-+.+...+++.+.  +++|.+.||+|.|||.||..++... +  ..++|||.-+++++..++++...           
T Consensus        63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~  142 (237)
T KOG1661|consen   63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK  142 (237)
T ss_pred             EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence            344778888888887  7899999999999999999888642 2  33499999999999999876542           


Q ss_pred             CCCeEEEEcccccccccccchhhhcccccCCCCceEEEec
Q psy17126         98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus        98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      ..++.++.||..+..             .+..++|+|...
T Consensus       143 ~~~l~ivvGDgr~g~-------------~e~a~YDaIhvG  169 (237)
T KOG1661|consen  143 RGELSIVVGDGRKGY-------------AEQAPYDAIHVG  169 (237)
T ss_pred             cCceEEEeCCccccC-------------CccCCcceEEEc
Confidence            156888888887743             222567877654

>KOG2899|consensus

Probab=97.64  E-value=6.4e-05  Score=65.42  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      ...+..+|||||-+|.+|..+++.. +..|+|+|||+.++..|+++++.
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            3456889999999999999999974 57899999999999999987653

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.61  E-value=0.00035  Score=60.78  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=60.1

Q ss_pred             CchhhhccCccccCCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHH-HHHh-hCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         22 KLRALKQLSQNFLFEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITR-SILN-RRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        22 ~~~~~k~~gQ~fl~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~-~La~-~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      ...+...|.|-|.+....+.+.+=....  -.|.+||=+|  -+-||. +++. ..+.+|+.+|+|.++++..++.+++.
T Consensus        13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~   90 (243)
T PF01861_consen   13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE   90 (243)
T ss_dssp             -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred             CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence            3467888999999988877765544332  3688999998  444442 2222 23589999999999999999877766


Q ss_pred             CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +-+++.++.|+.+- ++..+.          +++|.++.+|||.+..
T Consensus        91 gl~i~~~~~DlR~~-LP~~~~----------~~fD~f~TDPPyT~~G  126 (243)
T PF01861_consen   91 GLPIEAVHYDLRDP-LPEELR----------GKFDVFFTDPPYTPEG  126 (243)
T ss_dssp             T--EEEE---TTS----TTTS----------S-BSEEEE---SSHHH
T ss_pred             CCceEEEEeccccc-CCHHHh----------cCCCEEEeCCCCCHHH
Confidence            65699999999873 443221          4799999999997754

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.55  E-value=0.00039  Score=61.18  Aligned_cols=64  Identities=19%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             ccCccccCCHHHHHHHHHHcC-----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAG-----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~-----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +-|..|+.+..-..+++...+     -....++||||+|.|..|..++... .+|+|.|.|+.|...+++
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK  134 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh
Confidence            458889999998888887652     1245789999999999999999875 799999999999888875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.55  E-value=0.00032  Score=62.68  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccccc
Q psy17126         53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .+||-||-|.|..++.+++.. ..+++.||+|+..++.+++.....     .++++++.+|..++ +.+.          
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-v~~~----------  146 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-LRDC----------  146 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-HHhC----------
Confidence            699999999999999999985 379999999999999999865432     37899999999875 2221          


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                       ..++|+||....
T Consensus       147 -~~~fDvIi~D~t  158 (282)
T COG0421         147 -EEKFDVIIVDST  158 (282)
T ss_pred             -CCcCCEEEEcCC
Confidence             135888888764

>KOG3010|consensus

Probab=97.54  E-value=9.2e-05  Score=64.32  Aligned_cols=52  Identities=17%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCCCCC-CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         37 PRLTDKIVRNAGTITG-NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~-~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ..+...|...   .++ ..++|+|||+|.-++.++.. ..+|+|+|+++.|+..+++
T Consensus        21 tdw~~~ia~~---~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k   73 (261)
T KOG3010|consen   21 TDWFKKIASR---TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKK   73 (261)
T ss_pred             HHHHHHHHhh---CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhc
Confidence            3455555544   333 38999999999777888887 4899999999999999876

>KOG2361|consensus

Probab=97.53  E-value=0.00014  Score=63.24  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             ccccCCHHHHHHHHH-HcCCCCCC--EEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126         31 QNFLFEPRLTDKIVR-NAGTITGN--EVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASPCPVHFH  104 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~-~~~~~~~~--~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~~~v~vi  104 (240)
                      -+|+.|++++.+=.. .+......  +|||||||-|....++++-.+   -+|+|.|.+++.++..+++......++...
T Consensus        48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af  127 (264)
T KOG2361|consen   48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF  127 (264)
T ss_pred             ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence            347777776654333 33333222  799999999999999998643   589999999999999998654433555555


Q ss_pred             Eccccc
Q psy17126        105 LGDVMS  110 (240)
Q Consensus       105 ~~D~~~  110 (240)
                      ..|+..
T Consensus       128 v~Dlt~  133 (264)
T KOG2361|consen  128 VWDLTS  133 (264)
T ss_pred             ceeccc
Confidence            555544

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.47  E-value=0.0003  Score=67.70  Aligned_cols=60  Identities=15%  Similarity=0.037  Sum_probs=48.4

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      .+..+||||||.|.++..+|...+ ..++|||+...-+..+.......+ .|+.++.+|+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~  408 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL  408 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            467899999999999999999864 689999999887776655544333 689999888754

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.41  E-value=0.00026  Score=63.97  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=61.2

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      |.+-|-+++.+++.+.+.++..++|.=-|.|.-|..+++.. .++|+|+|.|+.+++.+++++..+.+++.++++++.++
T Consensus         2 ~~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l   81 (310)
T PF01795_consen    2 FYHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL   81 (310)
T ss_dssp             SS---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred             CceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence            44557788899999999999999999999999999999874 38999999999999999987766678999999999875


Q ss_pred             c
Q psy17126        112 T  112 (240)
Q Consensus       112 ~  112 (240)
                      .
T Consensus        82 ~   82 (310)
T PF01795_consen   82 D   82 (310)
T ss_dssp             H
T ss_pred             H
Confidence            4

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.40  E-value=0.00062  Score=60.79  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      ...+..+.+.++..|||+++|+|.=|..++...  .+.|+|+|+++.-+..++.++.+.+ .++.++..|..+...... 
T Consensus        75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~-  153 (283)
T PF01189_consen   75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP-  153 (283)
T ss_dssp             HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-
T ss_pred             ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-
Confidence            334455788899999999999999999999874  3799999999999999999888776 778888888877532111 


Q ss_pred             hhhhcccccCCCCceEEEecCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                                ...+|.|+...|=.-
T Consensus       154 ----------~~~fd~VlvDaPCSg  168 (283)
T PF01189_consen  154 ----------ESKFDRVLVDAPCSG  168 (283)
T ss_dssp             ----------TTTEEEEEEECSCCC
T ss_pred             ----------ccccchhhcCCCccc
Confidence                      124789998888543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.34  E-value=0.00095  Score=59.87  Aligned_cols=80  Identities=21%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      |.+-+-+++.+++.+.+.++...+|.--|-|.-+..+++..+  ++++|+|.|+.+++.+++....+.++++++++.+.+
T Consensus         5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275           5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            556678899999999999999999999999999999999864  689999999999999999887777899999998876


Q ss_pred             cc
Q psy17126        111 FT  112 (240)
Q Consensus       111 ~~  112 (240)
                      +.
T Consensus        85 l~   86 (314)
T COG0275          85 LA   86 (314)
T ss_pred             HH
Confidence            54

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.34  E-value=0.0015  Score=55.71  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             EEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc-ccccccchhhhcccccCCCC
Q psy17126         55 VCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS-FTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        55 VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~-~~~~~~~~~~~~~~~~~~~~  130 (240)
                      |+||||--|.|...|++++ +.+++|+|+++.-++.++++.+..+  ++++++.+|-++ ++..+             ..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e-------------~~   67 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGE-------------DV   67 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCC-------------CC
Confidence            6899999999999999986 3689999999999999999877654  789999999765 22211             02


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        131 GIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       131 ~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      ..+||+.    +...++.++|+....
T Consensus        68 d~ivIAG----MGG~lI~~ILe~~~~   89 (205)
T PF04816_consen   68 DTIVIAG----MGGELIIEILEAGPE   89 (205)
T ss_dssp             -EEEEEE----E-HHHHHHHHHHTGG
T ss_pred             CEEEEec----CCHHHHHHHHHhhHH
Confidence            2456665    566667777776543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.33  E-value=0.00061  Score=59.66  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=58.9

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      +..+||=||-|.|..++.+++.. ..+|++||+|+.+++.+++....     ..++++++.+|+..+ +...        
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~--------  146 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKET--------  146 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTS--------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhc--------
Confidence            56899999999999999999874 37999999999999999885432     137899999999774 2221        


Q ss_pred             ccCCC-CceEEEecCCC
Q psy17126        125 WSEGL-PGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~-~~~~VvsNlPY  140 (240)
                         .. ++|+||..++-
T Consensus       147 ---~~~~yDvIi~D~~d  160 (246)
T PF01564_consen  147 ---QEEKYDVIIVDLTD  160 (246)
T ss_dssp             ---SST-EEEEEEESSS
T ss_pred             ---cCCcccEEEEeCCC
Confidence               12 68999987764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.33  E-value=0.00058  Score=57.72  Aligned_cols=98  Identities=20%  Similarity=0.373  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ++.+...=..-.+++|||+|+|+|-.+...+..++..|++.|+++.....++-|.+..+-.+.++..|..- +-+.    
T Consensus        68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~----  142 (218)
T COG3897          68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPA----  142 (218)
T ss_pred             HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcc----
Confidence            34454444445789999999999999999999888899999999999888887776656678888888765 2111    


Q ss_pred             hhcccccCCCCceEEEecCCCCCCHHH-HHHHHH
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNVSTPL-IIKWIQ  152 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~Iss~i-l~~ll~  152 (240)
                                -..++.|.+=|+-+-.. ++.|+.
T Consensus       143 ----------~Dl~LagDlfy~~~~a~~l~~~~~  166 (218)
T COG3897         143 ----------FDLLLAGDLFYNHTEADRLIPWKD  166 (218)
T ss_pred             ----------eeEEEeeceecCchHHHHHHHHHH
Confidence                      12456777778766533 334444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0015  Score=60.25  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=74.0

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      |.++..-....+..+++.+|.+|||.++++|.=|..++....   ..|+|+|+|+.=+..+++++++.+ .|+.+++.|.
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            333433344444567889999999999999999999998742   357999999999999999988877 6788999998


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ..+.-  ..        ....++|.|+--.|=.-
T Consensus       218 ~~~~~--~~--------~~~~~fD~iLlDaPCSg  241 (355)
T COG0144         218 RRLAE--LL--------PGGEKFDRILLDAPCSG  241 (355)
T ss_pred             ccccc--cc--------cccCcCcEEEECCCCCC
Confidence            76531  11        11125888988887433

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.29  E-value=0.00082  Score=57.76  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      +.+++|||+|.|-=+.+|+-.. ..+|+-+|....=+..++.....++ +|++++++.++++.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~  130 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG  130 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc
Confidence            5899999999999999988432 3679999999988888888766666 78999999999864

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.26  E-value=0.00063  Score=62.13  Aligned_cols=98  Identities=10%  Similarity=0.052  Sum_probs=58.5

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-----------CCCeEEEEcccccccccccchh
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-----------PCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-----------~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ++.+|||+|||-|.=..........+++|+|++...++.++++....           .-...++.+|.....+.+.+..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            78999999999776544444444689999999999999998876211           1235678888876554443321


Q ss_pred             hhcccccCCCCceEEEecC--CCCCCHHH-HHHHHHhcc
Q psy17126        120 DRRRDWSEGLPGIRIIGNL--PFNVSTPL-IIKWIQAIS  155 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNl--PY~Iss~i-l~~ll~~~~  155 (240)
                             ...++|+|-+-.  =|.-.|.- ...+|....
T Consensus       142 -------~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs  173 (331)
T PF03291_consen  142 -------RSRKFDVVSCQFALHYAFESEEKARQFLKNVS  173 (331)
T ss_dssp             -------TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred             -------cCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence                   013566655543  36655554 333565544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0018  Score=56.34  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             HHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH-HHHHHhcCCCCeEEEE-ccccccccccc
Q psy17126         40 TDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC-LDMLAQASPCPVHFHL-GDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~-l~~~~~~~~~~v~vi~-~D~~~~~~~~~  116 (240)
                      +.++++...+ .++..+||||+-||.+|..++++++.+|+|||.....+.. ++.     .+++.++. .|+..+...++
T Consensus        67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~  141 (245)
T COG1189          67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF  141 (245)
T ss_pred             HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc
Confidence            3445555554 3689999999999999999999988999999999876654 331     35555543 34554443332


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCHHHH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI  147 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il  147 (240)
                      .           +.+|.+++.+-| ||...+
T Consensus       142 ~-----------~~~d~~v~DvSF-ISL~~i  160 (245)
T COG1189         142 T-----------EKPDLIVIDVSF-ISLKLI  160 (245)
T ss_pred             c-----------cCCCeEEEEeeh-hhHHHH
Confidence            1           246888888877 554443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.23  E-value=0.0015  Score=54.91  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=54.1

Q ss_pred             EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      +++|||+|.|.=+.+|+-..+ .+|+.+|....-+..++.....++ .|++++++++.+...              ...+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~--------------~~~f  116 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEY--------------RESF  116 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTT--------------TT-E
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccccc--------------CCCc
Confidence            899999999999988887543 689999999998888887666555 789999999988111              1357


Q ss_pred             eEEEec
Q psy17126        132 IRIIGN  137 (240)
Q Consensus       132 ~~VvsN  137 (240)
                      |.|++-
T Consensus       117 d~v~aR  122 (184)
T PF02527_consen  117 DVVTAR  122 (184)
T ss_dssp             EEEEEE
T ss_pred             cEEEee
Confidence            888875

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.21  E-value=0.00045  Score=57.02  Aligned_cols=78  Identities=22%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccccc-C
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS-E  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~-~  127 (240)
                      ++.+|||+||++|.+|..++++.  ..+|+|||+.+.-         . ..++..+++|+.+..-.+.+..    ... .
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-~~~~~~i~~d~~~~~~~~~i~~----~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-LQNVSFIQGDITNPENIKDIRK----LLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--TTEEBTTGGGEEEEHSHHGGG----SHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-ccceeeeecccchhhHHHhhhh----hcccc
Confidence            45899999999999999999986  4799999998771         1 1567788888865422111111    011 1


Q ss_pred             CCCceEEEecCCCCC
Q psy17126        128 GLPGIRIIGNLPFNV  142 (240)
Q Consensus       128 ~~~~~~VvsNlPY~I  142 (240)
                      ..++|.|++..-.++
T Consensus        89 ~~~~dlv~~D~~~~~  103 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNV  103 (181)
T ss_dssp             TCSESEEEE------
T ss_pred             ccCcceeccccccCC
Confidence            247899999883333

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.19  E-value=0.00079  Score=59.78  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126         54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR  133 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (240)
                      +|+|+-||.|.++..+...+...|.++|+++..++..+.+..    +. ++++|+.++...++.           ..+|+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~----~~-~~~~Di~~~~~~~~~-----------~~~D~   65 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP----NK-LIEGDITKIDEKDFI-----------PDIDL   65 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC----CC-CccCccccCchhhcC-----------CCCCE
Confidence            689999999999999988765678999999999998887642    22 678899887643321           35799


Q ss_pred             EEecCCCC
Q psy17126        134 IIGNLPFN  141 (240)
Q Consensus       134 VvsNlPY~  141 (240)
                      +++.+|.+
T Consensus        66 l~~gpPCq   73 (275)
T cd00315          66 LTGGFPCQ   73 (275)
T ss_pred             EEeCCCCh
Confidence            99999964

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.09  E-value=0.0024  Score=58.10  Aligned_cols=68  Identities=13%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHHHh-cCCCCeEE--EEccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMS  110 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~~~-~~~~~v~v--i~~D~~~  110 (240)
                      ..|++.+  .++..++|+|||+|.=|..|++..     ..+.++||+|..+++.+.+.+. ..-+.+++  +++|+.+
T Consensus        68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            4455554  356789999999999998877643     2579999999999998887665 32255666  8998865

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3115|consensus

Probab=96.99  E-value=0.0013  Score=55.92  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--------CCeEEEEcccccccccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--------CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--------~~v~vi~~D~~~~~~~~~~  117 (240)
                      ....+.|||||-|.|...|+...+ .-++|+||--...++.++++..+.        .|+.+...+++++ ++++|
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f  134 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFF  134 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchh
Confidence            345789999999999999998765 679999999999999888765431        5677888887775 34444

>KOG2940|consensus

Probab=96.98  E-value=0.0021  Score=55.88  Aligned_cols=75  Identities=12%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      ....++|||||.|++.+.|...+..+++-+|.|-.|++.++.... ..-.+....+|-+.+++.+             ++
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~Ldf~e-------------ns  137 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFLDFKE-------------NS  137 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-CceEEEEEecchhcccccc-------------cc
Confidence            456899999999999999998877899999999999988875211 0122445678888777654             46


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      +|.|++.+-
T Consensus       138 ~DLiisSls  146 (325)
T KOG2940|consen  138 VDLIISSLS  146 (325)
T ss_pred             hhhhhhhhh
Confidence            788888764

>KOG1663|consensus

Probab=96.97  E-value=0.0037  Score=54.05  Aligned_cols=98  Identities=14%  Similarity=0.078  Sum_probs=69.3

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGD  107 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D  107 (240)
                      ...+.+...+.+...+.....+++||||.=||.-+...|...  .++|+++|+|+...+...+..+..  ..++++++++
T Consensus        54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~  133 (237)
T KOG1663|consen   54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP  133 (237)
T ss_pred             ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence            356677766666655666677899999987777666666543  389999999999999887754433  3789999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEe
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIG  136 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs  136 (240)
                      +.+. +.++.+..      +.+.+|.+|-
T Consensus       134 a~es-Ld~l~~~~------~~~tfDfaFv  155 (237)
T KOG1663|consen  134 ALES-LDELLADG------ESGTFDFAFV  155 (237)
T ss_pred             hhhh-HHHHHhcC------CCCceeEEEE
Confidence            9874 44443321      2356777774

>PHA01634 hypothetical protein

Probab=96.94  E-value=0.0016  Score=51.63  Aligned_cols=46  Identities=20%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      .+.+|+|||++.|.-++.++.+++.+|+++|.++.+.+..+++++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            5789999999999999999999889999999999999999887653

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.92  E-value=0.0042  Score=55.23  Aligned_cols=61  Identities=15%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      ..++..+...++--...+|||+|+|+|+-+..+....  ..++++||.|+.|++.++......
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            3445555544433345799999999998776665532  368999999999999988876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1501|consensus

Probab=96.89  E-value=0.0019  Score=60.60  Aligned_cols=58  Identities=9%  Similarity=0.042  Sum_probs=49.0

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      ..|||||+|||-|+...+..++..|||+|.=.-|...+++.....+  +++++|+.--.+
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            4689999999999999998887899999999999999998766544  788888665443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.68  E-value=0.0039  Score=54.60  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .+..+|+|||||.=-|+.+..... ...++|+|||+.+++.+.......+.+.++...|.+.-.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP  167 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence            346899999999999999887653 369999999999999999877777778888888987653

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.67  E-value=0.0078  Score=57.88  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             ccCccccCCHHHHHHHHHHcCCC--CCCEEEEECCchhHHHHHHHhh---C--CCeEEEEeCCcchHHHHHHHHhc--C-
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAGTI--TGNEVCEVGPGPGSITRSILNR---R--PARLVLIEKDPRFTPCLDMLAQA--S-   97 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~~~--~~~~VLEIG~GtG~lt~~La~~---~--~~~V~avEid~~m~~~l~~~~~~--~-   97 (240)
                      .-|+ |.+...++.-+++.+...  ++..|.|.-||+|.+.......   +  ...+++-|....|...+..+..-  . 
T Consensus       193 ~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~  271 (501)
T TIGR00497       193 SGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID  271 (501)
T ss_pred             cCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence            3455 778888998888876543  6679999999999998654432   1  14699999999999888876421  1 


Q ss_pred             CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++.+.+.++|-+.-+  +         |....++|.|++|+||+.
T Consensus       272 ~~t~~~~~~dtl~~~--d---------~~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       272 YANFNIINADTLTTK--E---------WENENGFEVVVSNPPYSI  305 (501)
T ss_pred             ccccCcccCCcCCCc--c---------ccccccCCEEeecCCccc
Confidence            123444455544321  1         111125799999999975

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.54  E-value=0.074  Score=47.76  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      ...-+||||.||.|..-...+...+   .+|.-.|.++..++..++.+++.+  +-++|.++|+.+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            3557999999999999887777543   689999999999999998776644  4459999998764

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.45  E-value=0.008  Score=51.66  Aligned_cols=93  Identities=14%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC-eEEEEcccccccccccchhhhcccccCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~-v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ...++||.|+|.|..|..++.....+|..||..+.+++.+++......++ .++++.-..++..+             .+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~-------------~~  121 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE-------------EG  121 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------------TT
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC-------------CC
Confidence            45799999999999999887655689999999999999999754331122 45566655554332             13


Q ss_pred             CceEEEecCC-CCCCHHHHHHHHHhccc
Q psy17126        130 PGIRIIGNLP-FNVSTPLIIKWIQAISE  156 (240)
Q Consensus       130 ~~~~VvsNlP-Y~Iss~il~~ll~~~~~  156 (240)
                      ++|+|-..== =+.|...+..+|.+...
T Consensus       122 ~YDlIW~QW~lghLTD~dlv~fL~RCk~  149 (218)
T PF05891_consen  122 KYDLIWIQWCLGHLTDEDLVAFLKRCKQ  149 (218)
T ss_dssp             -EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred             cEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence            5676543211 13677778888887654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG4058|consensus

Probab=96.40  E-value=0.005  Score=50.10  Aligned_cols=78  Identities=13%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH--hcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA--QASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~--~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      -++.+++.+.-.+..+.+|+|+|.|.+....++.+...-+|+|+++-++.+.+-.+  ........+...|.-++++.+.
T Consensus        60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy  139 (199)
T KOG4058|consen   60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY  139 (199)
T ss_pred             HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence            34556666666666789999999999999988876578999999999998776532  2334678888899998887664

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.012  Score=50.19  Aligned_cols=81  Identities=20%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      +.++..|+|+|+-+|.-+..+++...  ..|+|||++|--          ...++.++++|+..-+..+...+.     .
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~-----l  107 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEA-----L  107 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHH-----c
Confidence            35789999999999999999998753  359999998742          125699999999876533221110     1


Q ss_pred             CCCCceEEEecCCCCCCH
Q psy17126        127 EGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss  144 (240)
                      +..+.|+|+|.+--+++.
T Consensus       108 ~~~~~DvV~sD~ap~~~g  125 (205)
T COG0293         108 GGAPVDVVLSDMAPNTSG  125 (205)
T ss_pred             CCCCcceEEecCCCCcCC
Confidence            113458999876555543

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.39  E-value=0.0059  Score=54.22  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126         54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR  133 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (240)
                      +|+|+=||.|.++..+...+...|.|+|+|+..++..+.|..      .+..+|+.+++...+ +.          ..|+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l-~~----------~~D~   64 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDL-PK----------DVDL   64 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHH-HH----------T-SE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccc-cc----------cceE
Confidence            689999999999999988865689999999999998887652      789999999876543 10          3689


Q ss_pred             EEecCC---CCCCH
Q psy17126        134 IIGNLP---FNVST  144 (240)
Q Consensus       134 VvsNlP---Y~Iss  144 (240)
                      +++.+|   |+...
T Consensus        65 l~ggpPCQ~fS~ag   78 (335)
T PF00145_consen   65 LIGGPPCQGFSIAG   78 (335)
T ss_dssp             EEEE---TTTSTTS
T ss_pred             EEeccCCceEeccc
Confidence            999998   66554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.33  E-value=0.021  Score=48.66  Aligned_cols=77  Identities=14%  Similarity=0.088  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCe-EEEEcccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPV-HFHLGDVMSF  111 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v-~vi~~D~~~~  111 (240)
                      -++.-+-.+++..-...+.+|||||||||--+..++...+ .+-.--|.++......+......+ +|+ .-+.-|+.+-
T Consensus         9 RNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~   88 (204)
T PF06080_consen    9 RNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP   88 (204)
T ss_pred             hCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence            3444344444443223334699999999999999999864 567778888888666655444332 332 2344555543

The function of this family is unknown.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.29  E-value=0.012  Score=49.24  Aligned_cols=57  Identities=16%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      -.+..+++++++... .+|+.|||.=||+|+.+.+..+.+ .+.+|+|+++..++.+++
T Consensus       175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            345678999998875 578999999999999988888774 799999999999988763

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.25  E-value=0.066  Score=46.13  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccch
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .+++.+.  .+.++.||||--|.|+..|.+.+ +.++++.|+++.-++.+.++....+  +++++..+|-+.. +..   
T Consensus         9 ~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l~~---   82 (226)
T COG2384           9 TVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-LEL---   82 (226)
T ss_pred             HHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-cCc---
Confidence            3444443  45569999999999999999875 4799999999999999988776543  7789999998542 211   


Q ss_pred             hhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      +        ......||+.    +...+|..+|++...
T Consensus        83 ~--------d~~d~ivIAG----MGG~lI~~ILee~~~  108 (226)
T COG2384          83 E--------DEIDVIVIAG----MGGTLIREILEEGKE  108 (226)
T ss_pred             c--------CCcCEEEEeC----CcHHHHHHHHHHhhh
Confidence            0        0123456665    567777777776654

>KOG3987|consensus

Probab=96.22  E-value=0.0017  Score=55.57  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             HHhCchhhhccCccccCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+-.+.---..|..|+.+++-.++++..-+.   +...++||+|+|.|-+|..++... .+|+|.|.|..|...+++
T Consensus        77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen   77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKK  152 (288)
T ss_pred             hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhh
Confidence            3344444455788899999999998876543   234799999999999999998874 689999999999999876

>PRK00536 speE spermidine synthase; Provisional

Probab=96.21  E-value=0.026  Score=49.99  Aligned_cols=100  Identities=8%  Similarity=0.001  Sum_probs=67.4

Q ss_pred             hhhccCccccCC--------HHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126         25 ALKQLSQNFLFE--------PRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        25 ~~k~~gQ~fl~d--------~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~   93 (240)
                      -...||....+|        ..+-..++.+..   ....++||=||-|-|...+.++++. .+|+-||||+.+++.+++.
T Consensus        35 es~~fGr~LvLD~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~  113 (262)
T PRK00536         35 KSKDFGEIAMLNKQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISF  113 (262)
T ss_pred             EccccccEEEEeeeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHH
Confidence            344566666555        224444444432   2345899999999999999999984 6999999999999999883


Q ss_pred             Hh----cC-CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         94 AQ----AS-PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        94 ~~----~~-~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ..    .+ +++++++.. +     .+..          .+++|+||.-..|.
T Consensus       114 lP~~~~~~~DpRv~l~~~-~-----~~~~----------~~~fDVIIvDs~~~  150 (262)
T PRK00536        114 FPHFHEVKNNKNFTHAKQ-L-----LDLD----------IKKYDLIICLQEPD  150 (262)
T ss_pred             CHHHHHhhcCCCEEEeeh-h-----hhcc----------CCcCCEEEEcCCCC
Confidence            32    22 378888751 1     1100          13688888885543

>PRK11524 putative methyltransferase; Provisional

Probab=96.16  E-value=0.018  Score=51.32  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      ..+++.+++... .+|+.|||.=+|+|+.+.+..+. ..+.+|+|++++-++.+++++.
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHH
Confidence            468888888765 58999999999999998887776 4899999999999999988764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.02  E-value=0.02  Score=52.97  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHH--Hh-----cC-CCCeEEEEcccccccccccchhh
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDML--AQ-----AS-PCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~--~~-----~~-~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +...+||=+|-|.|--.+.+++.. ..+|+-||+||+|++.++++  ..     .+ +++++++..|+.++- ..-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhh----
Confidence            456789999999999999999874 47999999999999998842  11     11 378999999998752 111    


Q ss_pred             hcccccCCCCceEEEecCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlP  139 (240)
                             ...+|.||-.+|
T Consensus       363 -------~~~fD~vIVDl~  374 (508)
T COG4262         363 -------ADMFDVVIVDLP  374 (508)
T ss_pred             -------cccccEEEEeCC
Confidence                   136888888887

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.98  E-value=0.028  Score=41.52  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             EEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCC-eEEEEccccc
Q psy17126         55 VCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMS  110 (240)
Q Consensus        55 VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~-v~vi~~D~~~  110 (240)
                      ++|+|||+|..+ .++....  ..++++|+++.++...+......... +.++.+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence            999999999977 3443322  38999999999998855433221111 6788888776

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.98  E-value=0.0087  Score=53.29  Aligned_cols=118  Identities=16%  Similarity=0.280  Sum_probs=83.1

Q ss_pred             HHHHHHHhC------chhhhccCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHH-HHHHhh-CCCeEEEEeCC
Q psy17126         14 IRDIIKLYK------LRALKQLSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSIT-RSILNR-RPARLVLIEKD   83 (240)
Q Consensus        14 ~~~~~~~~~------~~~~k~~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt-~~La~~-~~~~V~avEid   83 (240)
                      -+++++++.      ..+...|.|-|.+....+.+++-.-  +--.|..|+=+|  --.|| .+++-. .+.+|..||+|
T Consensus       107 f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDID  184 (354)
T COG1568         107 FKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDID  184 (354)
T ss_pred             HHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEech
Confidence            455665543      4466779999999988776653221  223678899999  44454 333332 26899999999


Q ss_pred             cchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         84 PRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        84 ~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      .+++....+.+++.+ +|++.+.-|..+- +++.+.          .+||+++..||+.+..
T Consensus       185 ERli~fi~k~aee~g~~~ie~~~~Dlr~p-lpe~~~----------~kFDvfiTDPpeTi~a  235 (354)
T COG1568         185 ERLIKFIEKVAEELGYNNIEAFVFDLRNP-LPEDLK----------RKFDVFITDPPETIKA  235 (354)
T ss_pred             HHHHHHHHHHHHHhCccchhheeehhccc-ChHHHH----------hhCCeeecCchhhHHH
Confidence            999999888777766 6799998898873 444332          3689999999997754

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.97  E-value=0.041  Score=47.98  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             CCEEEEECCchhHHHHHHHhhC---------CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR---------PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~---------~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      .-+|+|+|+|+|.|+.-++...         ..+++-||+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            3699999999999999888642         14799999999998887776543

; PDB: 4F3N_A 1ZKD_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.90  E-value=0.047  Score=49.01  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=41.0

Q ss_pred             ccCCHHHHHHHHHHcCC-CCCCEEEEECCchhH----HHHHHHhhC-----CCeEEEEeCCcchHHHHHH
Q psy17126         33 FLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGS----ITRSILNRR-----PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~----lt~~La~~~-----~~~V~avEid~~m~~~l~~   92 (240)
                      |.-|+...+.+.+.+.. ...-+|+..||.||-    +++.+.+..     ..+|+|+|+|+.+++.|++
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~  165 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS  165 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence            66666655555544321 123699999999994    444444421     2479999999999999987

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.89  E-value=0.012  Score=53.35  Aligned_cols=68  Identities=13%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             EEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEE
Q psy17126         55 VCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI  134 (240)
Q Consensus        55 VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~V  134 (240)
                      |+|+-||.|.++..+...+..-+.++|+|+..++..+.+..   +  .++++|+.+++..++            ...|++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~--~~~~~Di~~~~~~~~------------~~~dvl   63 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N--KVPFGDITKISPSDI------------PDFDIL   63 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C--CCCccChhhhhhhhC------------CCcCEE
Confidence            68999999999999987764456789999999998887542   2  566789988765432            236888


Q ss_pred             EecCC
Q psy17126        135 IGNLP  139 (240)
Q Consensus       135 vsNlP  139 (240)
                      ++.+|
T Consensus        64 ~gg~P   68 (315)
T TIGR00675        64 LGGFP   68 (315)
T ss_pred             EecCC
Confidence            88887

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.88  E-value=0.045  Score=47.30  Aligned_cols=90  Identities=17%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .++..|+.-   +.+.+|.+||=+|+.+|+....++...  .+.|+|||.+++...-+-..++. .+|+--+.+|+....
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~  135 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPE  135 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGG
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChH
Confidence            455556543   456799999999999999999998862  36999999999877666554443 478999999998632


Q ss_pred             -ccccchhhhcccccCCCCceEEEecCC
Q psy17126        113 -MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       113 -~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       +..+.           +..|.|++...
T Consensus       136 ~Y~~lv-----------~~VDvI~~DVa  152 (229)
T PF01269_consen  136 KYRMLV-----------EMVDVIFQDVA  152 (229)
T ss_dssp             GGTTTS-------------EEEEEEE-S
T ss_pred             Hhhccc-----------ccccEEEecCC
Confidence             11222           35799999855

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1975|consensus

Probab=95.87  E-value=0.014  Score=53.08  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=51.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-------CCeEEEEcccccccccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-------CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-------~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+++.++++|||-|.=.+..-+.+...++|+||....++.++++.....       -.+.++.+|-....+.+++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~  190 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL  190 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence            5788999999999887776666656899999999999999988654321       1367888887665554443

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.75  E-value=0.032  Score=47.86  Aligned_cols=73  Identities=10%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             HHHHHHHHcCCCC-CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~-~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      -++.|++++.-.+ +..|.|+|||.+.++..+...  .+|+..|+-..            .+  .|+.+|+.++|+++  
T Consensus        59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~--~~V~SfDLva~------------n~--~Vtacdia~vPL~~--  120 (219)
T PF05148_consen   59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK--HKVHSFDLVAP------------NP--RVTACDIANVPLED--  120 (219)
T ss_dssp             HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S------------ST--TEEES-TTS-S--T--
T ss_pred             cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC--ceEEEeeccCC------------CC--CEEEecCccCcCCC--
Confidence            4677888876544 578999999999999776432  47999998632            12  37789999999865  


Q ss_pred             hhhhcccccCCCCceEEEecCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                 +..|++|-.|-.
T Consensus       121 -----------~svDv~VfcLSL  132 (219)
T PF05148_consen  121 -----------ESVDVAVFCLSL  132 (219)
T ss_dssp             -----------T-EEEEEEES--
T ss_pred             -----------CceeEEEEEhhh
Confidence                       357888888765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2912|consensus

Probab=95.73  E-value=0.028  Score=50.97  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=60.8

Q ss_pred             HHHHHHHHcCCCCCCEE--EEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         39 LTDKIVRNAGTITGNEV--CEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~V--LEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      +++.++..-....+..+  +|||.|.-.+--.+-.+. .-..+|+|+|....+.++.+....+  ..+.+|+-...+.-+
T Consensus        88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll  167 (419)
T KOG2912|consen   88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL  167 (419)
T ss_pred             HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence            34445544433333332  688887776654443332 3578999999999999998765433  567787776554434


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .+....      .....|+.|.+||||+-.
T Consensus       168 ~d~~~~------~~e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  168 MDALKE------ESEIIYDFCMCNPPFFEN  191 (419)
T ss_pred             hhhhcc------CccceeeEEecCCchhhc
Confidence            332211      011358999999998655

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=0.04  Score=50.73  Aligned_cols=71  Identities=20%  Similarity=0.385  Sum_probs=49.1

Q ss_pred             hhccCcc--ccCCHHHHH--------HHHHH---cCCCCCCEEEEECCchhHHHHHHHhhC---------CCeEEEEeCC
Q psy17126         26 LKQLSQN--FLFEPRLTD--------KIVRN---AGTITGNEVCEVGPGPGSITRSILNRR---------PARLVLIEKD   83 (240)
Q Consensus        26 ~k~~gQ~--fl~d~~i~~--------~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~---------~~~V~avEid   83 (240)
                      +.++|+.  |++.+.+-+        .+++.   .+....-.++|||+|+|.|..-+++..         ..++.-||+|
T Consensus        39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s  118 (370)
T COG1565          39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS  118 (370)
T ss_pred             chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence            3445554  888887533        33332   233234579999999999998877642         3689999999


Q ss_pred             cchHHHHHHHHhc
Q psy17126         84 PRFTPCLDMLAQA   96 (240)
Q Consensus        84 ~~m~~~l~~~~~~   96 (240)
                      +++...=+++++.
T Consensus       119 ~~L~~~Qk~~L~~  131 (370)
T COG1565         119 PELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHHHHHhc
Confidence            9998876666654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.46  E-value=0.042  Score=47.87  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=57.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccccccccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ++-++||||.|--.+--.+-.+ ++-+.+|-|+|+..++.++.+....+   ..+++....=..-=|+.+        |.
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi--------ig  149 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGI--------IG  149 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccc--------cc
Confidence            5578899999876664333322 23589999999999999988765431   345554332222112322        22


Q ss_pred             CCCCceEEEecCCCCCCHHHH
Q psy17126        127 EGLPGIRIIGNLPFNVSTPLI  147 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss~il  147 (240)
                      ..+.+|.+.+||||+-+...-
T Consensus       150 ~nE~yd~tlCNPPFh~s~~da  170 (292)
T COG3129         150 KNERYDATLCNPPFHDSAADA  170 (292)
T ss_pred             ccceeeeEecCCCcchhHHHH
Confidence            235799999999998876554

>PRK13699 putative methylase; Provisional

Probab=95.45  E-value=0.057  Score=46.70  Aligned_cols=59  Identities=15%  Similarity=0.066  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      +..+++.+++... .+|+.|||.=||+|+......+. ..+.+|+|+++...+.+.++...
T Consensus       149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHH
Confidence            4567888887654 47899999999999998888776 47999999999999998876643

>KOG2651|consensus

Probab=95.39  E-value=0.044  Score=50.81  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=37.2

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+-+.|+|+|+|.|.|++.++-...-.|.|||-|..+.+.+++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            3457899999999999999988766799999999988887765

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.34  E-value=0.024  Score=46.13  Aligned_cols=48  Identities=4%  Similarity=-0.040  Sum_probs=36.3

Q ss_pred             EEEeCCcchHHHHHHHHhcC----CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecC
Q psy17126         78 VLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus        78 ~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      +|+|+|++|++.++++....    ..+++++++|+.++++++             +.+|.|+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-------------~~fD~v~~~~   52 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD-------------CEFDAVTMGY   52 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC-------------CCeeEEEecc
Confidence            58999999999997654321    247999999999987543             3578888764

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.59  E-value=0.06  Score=46.38  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             HHHHHHHHc----CCCCCCEEEEECCchhHHHHHHHh--hC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         39 LTDKIVRNA----GTITGNEVCEVGPGPGSITRSILN--RR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        39 i~~~iv~~~----~~~~~~~VLEIG~GtG~lt~~La~--~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      ++..|.+.+    .-...-++.|.+||+|.|...+.-  .. -..|+|-|+|+++++.+++|+.
T Consensus        35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            445555543    223457899999999999755543  21 1689999999999999998763

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2078|consensus

Probab=94.48  E-value=0.018  Score=53.96  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHhCchhhhccCccccCCHHHH--HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         19 KLYKLRALKQLSQNFLFEPRLT--DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        19 ~~~~~~~~k~~gQ~fl~d~~i~--~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      +..+...+-.||.-|.-.+.-.  .++..  -.++|..|.|+-||-|-++.+++..+ ++|+|-|++++++++++.++..
T Consensus       217 re~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~l  293 (495)
T KOG2078|consen  217 REGGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKL  293 (495)
T ss_pred             ecCCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccc
Confidence            4566666777777664433222  22222  34689999999999999999999986 7999999999999999987643


Q ss_pred             C--C-CCeEEEEcccccc
Q psy17126         97 S--P-CPVHFHLGDVMSF  111 (240)
Q Consensus        97 ~--~-~~v~vi~~D~~~~  111 (240)
                      .  . .++.+++.|+-.+
T Consensus       294 Nkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  294 NKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             cccchhheeeecccHHHH
Confidence            2  1 4588888887553

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=94.41  E-value=0.26  Score=43.63  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .++..|-+.--+.++..++|.|||.|.|+..++...      ...++.||....=. ..........  ..++=+..|+.
T Consensus         5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~   83 (259)
T PF05206_consen    5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK   83 (259)
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence            344545444445677899999999999999999864      24789999854211 2222222222  35777889999


Q ss_pred             cccccccc
Q psy17126        110 SFTMQNMF  117 (240)
Q Consensus       110 ~~~~~~~~  117 (240)
                      ++++..+.
T Consensus        84 dl~l~~~~   91 (259)
T PF05206_consen   84 DLDLSKLP   91 (259)
T ss_pred             ccchhhcc
Confidence            99987654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.31  E-value=0.06  Score=46.91  Aligned_cols=86  Identities=14%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             HHHHHcCCCCC--CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh---cCC-------CCeEEEEcccc
Q psy17126         42 KIVRNAGTITG--NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASP-------CPVHFHLGDVM  109 (240)
Q Consensus        42 ~iv~~~~~~~~--~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~---~~~-------~~v~vi~~D~~  109 (240)
                      .++++++++++  .+|||.=+|.|.=+..++..| ++|+++|.+|-+...++.-++   ...       .+++++++|..
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~  142 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL  142 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence            47777887776  499999999999999999875 699999999988877765221   111       37999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      ++ +. . +         ...+|+|.-.|=|
T Consensus       143 ~~-L~-~-~---------~~s~DVVY~DPMF  161 (234)
T PF04445_consen  143 EY-LR-Q-P---------DNSFDVVYFDPMF  161 (234)
T ss_dssp             CH-CC-C-H---------SS--SEEEE--S-
T ss_pred             HH-Hh-h-c---------CCCCCEEEECCCC
Confidence            74 22 1 1         1357888776544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG0822|consensus

Probab=93.97  E-value=0.12  Score=49.83  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHcCCCC---CCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHH-HHhcCCCCeEEEEcc
Q psy17126         37 PRLTDKIVRNAGTIT---GNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDM-LAQASPCPVHFHLGD  107 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~---~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~-~~~~~~~~v~vi~~D  107 (240)
                      ..+...++..+.-..   ...|+=+|+|-|-|....++..     ..+++|||.+|..+-.++. +.+...++|+++.+|
T Consensus       350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D  429 (649)
T KOG0822|consen  350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD  429 (649)
T ss_pred             HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence            345555655543222   3467889999999987666531     2579999999999988876 334445889999999


Q ss_pred             ccccccc
Q psy17126        108 VMSFTMQ  114 (240)
Q Consensus       108 ~~~~~~~  114 (240)
                      +.+++.+
T Consensus       430 MR~w~ap  436 (649)
T KOG0822|consen  430 MRKWNAP  436 (649)
T ss_pred             ccccCCc
Confidence            9998744

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.96  E-value=0.14  Score=46.58  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCce
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI  132 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~  132 (240)
                      -+++|+=||.|.+...+...+..-+.++|+|+..++..+.+..    .-.++++|+.++....+..          ...|
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~----~~~~~~~di~~~~~~~~~~----------~~~D   69 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP----HGDIILGDIKELDGEALRK----------SDVD   69 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC----CCceeechHhhcChhhccc----------cCCC
Confidence            5799999999999999988765678999999999988886542    2457778888766544210          1578


Q ss_pred             EEEecCC---CCCCH
Q psy17126        133 RIIGNLP---FNVST  144 (240)
Q Consensus       133 ~VvsNlP---Y~Iss  144 (240)
                      ++++.+|   |++..
T Consensus        70 vligGpPCQ~FS~aG   84 (328)
T COG0270          70 VLIGGPPCQDFSIAG   84 (328)
T ss_pred             EEEeCCCCcchhhcC
Confidence            9999998   65553

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.95  E-value=0.14  Score=43.71  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=71.8

Q ss_pred             HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-
Q psy17126         38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-  112 (240)
Q Consensus        38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-  112 (240)
                      .++..|+.-   +++.+|++||=+|+-+|+....++...+ +.++|||.++++..-+-..+.. .+|+--+.+|+.... 
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~  138 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEK  138 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHH
Confidence            356666654   3578999999999999999999988643 7899999999988776655543 478888999997632 


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      +..+.           +..|.|+..    |+.|-=.+++...
T Consensus       139 Y~~~V-----------e~VDviy~D----VAQp~Qa~I~~~N  165 (231)
T COG1889         139 YRHLV-----------EKVDVIYQD----VAQPNQAEILADN  165 (231)
T ss_pred             hhhhc-----------ccccEEEEe----cCCchHHHHHHHH
Confidence            11222           246778776    6666655555444

>KOG3045|consensus

Probab=93.78  E-value=0.14  Score=45.50  Aligned_cols=111  Identities=11%  Similarity=0.083  Sum_probs=68.0

Q ss_pred             HHHHHHHHcCCCC-CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~-~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      -++.|++.+...+ ...|.|+|||-+.++.   .. ...|+.+|+-+              .|=+|+.+|+.++++++  
T Consensus       167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d--  226 (325)
T KOG3045|consen  167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVPLED--  226 (325)
T ss_pred             hHHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCcCcc--
Confidence            3667777776655 4678899999998876   22 35899888742              23457889999999876  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------cccccchh--h-hhHHHHHHHcCCCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------NLLFPKHK--R-QLVVSLLERACVKPILR  182 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------~~~~~~~~--~-~~~~~~l~~~gi~~~~R  182 (240)
                                 .+.|++|-.|-...+.  +..++..+..        |.+++...  . ...-+.+..+|.+-.-+
T Consensus       227 -----------~svDvaV~CLSLMgtn--~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  227 -----------ESVDVAVFCLSLMGTN--LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             -----------CcccEEEeeHhhhccc--HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence                       3567777776543332  2333333221        33333211  1 22445588888776554

>KOG3924|consensus

Probab=93.75  E-value=0.14  Score=47.77  Aligned_cols=93  Identities=12%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             HHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh--
Q psy17126         19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ--   95 (240)
Q Consensus        19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~--   95 (240)
                      +.|.-.....||-   +.++-+..+++.+.+.+++...|+|.|-|.+...++..+ +..-+|+|+.....+.+..+..  
T Consensus       163 ~hYk~~ss~~YGE---~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~  239 (419)
T KOG3924|consen  163 QHYKSFSSETYGE---TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEF  239 (419)
T ss_pred             Hhhccccccchhh---hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHH
Confidence            3555555556665   366778889999999999999999999999998877653 4677899998776665544221  


Q ss_pred             -----cCC---CCeEEEEccccccccc
Q psy17126         96 -----ASP---CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        96 -----~~~---~~v~vi~~D~~~~~~~  114 (240)
                           .++   ..+..+++++..-+.-
T Consensus       240 kk~~k~fGk~~~~~~~i~gsf~~~~~v  266 (419)
T KOG3924|consen  240 KKLMKHFGKKPNKIETIHGSFLDPKRV  266 (419)
T ss_pred             HHHHHHhCCCcCceeecccccCCHHHH
Confidence                 122   5588999999876543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.67  E-value=1  Score=37.00  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             cCccccCCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLG  106 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~  106 (240)
                      +.| |.-+...++.+++.+.-  .++.+|+=|||=+-.....-......+++.+|+|.++..        ++++ +++.-
T Consensus         2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fy   71 (162)
T PF10237_consen    2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFY   71 (162)
T ss_pred             ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCCc-ceEEC
Confidence            457 66677777777766532  456799999998776665541222368999999988753        2334 45555


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      |..+-   ..++.    .+  .+++|+||.-||| ++.+.+.+...
T Consensus        72 D~~~p---~~~~~----~l--~~~~d~vv~DPPF-l~~ec~~k~a~  107 (162)
T PF10237_consen   72 DYNEP---EELPE----EL--KGKFDVVVIDPPF-LSEECLTKTAE  107 (162)
T ss_pred             CCCCh---hhhhh----hc--CCCceEEEECCCC-CCHHHHHHHHH
Confidence            55442   11111    12  2478999999999 87777755544

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=93.52  E-value=0.47  Score=42.35  Aligned_cols=60  Identities=27%  Similarity=0.362  Sum_probs=40.6

Q ss_pred             CEEEEECCchhHHHHHHHhh--C-CCeEEEEeCCcchHHHHHHHHhc---CCCCeEEEEccccccc
Q psy17126         53 NEVCEVGPGPGSITRSILNR--R-PARLVLIEKDPRFTPCLDMLAQA---SPCPVHFHLGDVMSFT  112 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~--~-~~~V~avEid~~m~~~l~~~~~~---~~~~v~vi~~D~~~~~  112 (240)
                      .+|+=||+|+=-+|..+...  + ...|+++|+|+..++.+++....   ...+++++.+|+....
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~  187 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT  187 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence            49999999999998665542  2 35799999999999999887652   3478999999998754

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.37  E-value=0.48  Score=45.42  Aligned_cols=91  Identities=11%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh---hhcccc-cC
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE---DRRRDW-SE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~---~~~~~~-~~  127 (240)
                      .-+++|+=||.|.++..+-..+...|.++|+|+...+..+.|... .+...++.+|+.+++.......   ...... ..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~-~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~  166 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC-DPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH  166 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC-CCccceeccChhhCccccccccchhhhhhhhhcc
Confidence            458999999999999999877655789999999998887765421 1345667889988865421100   000000 00


Q ss_pred             CCCceEEEecCC---CCCC
Q psy17126        128 GLPGIRIIGNLP---FNVS  143 (240)
Q Consensus       128 ~~~~~~VvsNlP---Y~Is  143 (240)
                      ....|++++.+|   |++.
T Consensus       167 ~p~~DvL~gGpPCQ~FS~A  185 (467)
T PRK10458        167 IPDHDVLLAGFPCQPFSLA  185 (467)
T ss_pred             CCCCCEEEEcCCCCccchh
Confidence            124689999998   6654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=92.99  E-value=0.057  Score=40.29  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=16.7

Q ss_pred             EEECCchhHHHHHHHhhC--C--CeEEEEeCCcc---hHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         56 CEVGPGPGSITRSILNRR--P--ARLVLIEKDPR---FTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        56 LEIG~GtG~lt~~La~~~--~--~~V~avEid~~---m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      ||||+..|.-|..+++..  .  .++++||..+.   .-+.+++  .....+++++++|..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~   61 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF   61 (106)
T ss_dssp             --------------------------EEEESS--------------GGG-BTEEEEES-THHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH
Confidence            699999999998888742  1  37999999994   3333332  22346899999999764

>KOG4589|consensus

Probab=92.95  E-value=0.14  Score=43.29  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEc-cccccccc-ccchhhhccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLG-DVMSFTMQ-NMFSEDRRRD  124 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~-D~~~~~~~-~~~~~~~~~~  124 (240)
                      +.++++|||+||-+|+.+....++. + +.|.|||+-.-.-          ...++++++ |+.+.... .++...    
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----------~~Ga~~i~~~dvtdp~~~~ki~e~l----  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----------PEGATIIQGNDVTDPETYRKIFEAL----  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----------CCCcccccccccCCHHHHHHHHHhC----
Confidence            3589999999999999999888874 2 7899999864221          244667777 66654321 222210    


Q ss_pred             ccCCCCceEEEecCCCCCCH
Q psy17126        125 WSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~Iss  144 (240)
                        .+-+.|+|+|.+-.|-|.
T Consensus       133 --p~r~VdvVlSDMapnaTG  150 (232)
T KOG4589|consen  133 --PNRPVDVVLSDMAPNATG  150 (232)
T ss_pred             --CCCcccEEEeccCCCCcC
Confidence              113578999988666554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.91  E-value=0.45  Score=35.78  Aligned_cols=47  Identities=28%  Similarity=0.322  Sum_probs=34.1

Q ss_pred             CchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         60 PGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        60 ~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      ||.|.++..+++.   ....|+.+|.|++.++.+++      ..+.++.||..+.+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~------~~~~~i~gd~~~~~   53 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE------EGVEVIYGDATDPE   53 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH------TTSEEEES-TTSHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh------cccccccccchhhh
Confidence            5667788777764   22489999999999887764      23789999998754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=92.78  E-value=0.25  Score=42.28  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             CccccCCHH---HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-----CCCeEEEEeCCcchHHHHHHHHhcCCCCe
Q psy17126         30 SQNFLFEPR---LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVLIEKDPRFTPCLDMLAQASPCPV  101 (240)
Q Consensus        30 gQ~fl~d~~---i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-----~~~~V~avEid~~m~~~l~~~~~~~~~~v  101 (240)
                      |.-.+..|.   ..+.++-.+.   .+.|+|+|.=.|.-+...|..     ..++|+|||+|.+.............+++
T Consensus        11 G~pi~q~P~Dm~~~qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI   87 (206)
T PF04989_consen   11 GRPIIQYPQDMVAYQELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI   87 (206)
T ss_dssp             TEEESS-HHHHHHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred             CeehhcCHHHHHHHHHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence            443444443   4455555543   479999999887776655542     13799999998766543322111123789


Q ss_pred             EEEEccccccc
Q psy17126        102 HFHLGDVMSFT  112 (240)
Q Consensus       102 ~vi~~D~~~~~  112 (240)
                      ++++||..+.+
T Consensus        88 ~~i~Gds~d~~   98 (206)
T PF04989_consen   88 TFIQGDSIDPE   98 (206)
T ss_dssp             EEEES-SSSTH
T ss_pred             EEEECCCCCHH
Confidence            99999987654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1227|consensus

Probab=92.63  E-value=0.026  Score=50.76  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             CCCEEEEECCchhHHHH-HHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         51 TGNEVCEVGPGPGSITR-SILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~-~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      .+..|+|+=+|.|++|. .+...+++.|+|+|.+|..++.++++++...  .+..++.||-...-+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~  259 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP  259 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc
Confidence            35789999999999999 6666677899999999999999998776432  455667777665443

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.60  E-value=0.11  Score=39.90  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=32.2

Q ss_pred             HHHHHHHHcC----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcc
Q psy17126         39 LTDKIVRNAG----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR   85 (240)
Q Consensus        39 i~~~iv~~~~----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~   85 (240)
                      ++..++..-.    ..+....+|||||.|-|.--|.+.+ -+-.|+|.-.+
T Consensus        42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG-y~G~GiD~R~R   91 (112)
T PF07757_consen   42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG-YPGWGIDARRR   91 (112)
T ss_pred             HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC-CCccccccccc
Confidence            5555554422    2244579999999999999888875 57788887543

; GO: 0008168 methyltransferase activity

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.22  E-value=0.24  Score=41.90  Aligned_cols=42  Identities=12%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             CCCEEEEECCchhH----HHHHHHhh---CC---CeEEEEeCCcchHHHHHH
Q psy17126         51 TGNEVCEVGPGPGS----ITRSILNR---RP---ARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        51 ~~~~VLEIG~GtG~----lt~~La~~---~~---~~V~avEid~~m~~~l~~   92 (240)
                      ..-+|+..||+||-    +++.+.+.   ..   .+|+|.|+|+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            45789999999995    44444441   11   489999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1709|consensus

Probab=92.17  E-value=0.63  Score=40.33  Aligned_cols=72  Identities=19%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      +....++.+. .+|.+||+||-|-|.....+.++.+.+-+-||..++.+..++...-....||.++.|-+++.
T Consensus        90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv  161 (271)
T KOG1709|consen   90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV  161 (271)
T ss_pred             HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence            4444444444 67899999999999999999887666777799999999998874322237899999988775

>KOG1122|consensus

Probab=92.12  E-value=0.44  Score=44.84  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      .+.+++|.+|||.++-+|.=|..+|...  .+.|+|.|.+..-+..++.++.+.+ .+..+.+.|..+++
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~  305 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP  305 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence            4567899999999999999998888742  4789999999999999999888776 77888889988654

>KOG2198|consensus

Probab=91.85  E-value=0.52  Score=43.62  Aligned_cols=92  Identities=21%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhCC-----CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchh
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRRP-----ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~-----~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      .++++++++|||.++-+|.=|..|++...     +.|+|-|.|..=+..+..-....+ .++.+.+.|+..++-..+   
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~---  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYL---  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccc---
Confidence            35678999999999999999999988642     289999999887777766444433 678888888776542110   


Q ss_pred             hhccccc--CCCCceEEEecCCCCCC
Q psy17126        120 DRRRDWS--EGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       120 ~~~~~~~--~~~~~~~VvsNlPY~Is  143 (240)
                         ..|.  ....||+|....|=.-.
T Consensus       227 ---~~~~~~~~~~fDrVLvDVPCS~D  249 (375)
T KOG2198|consen  227 ---KDGNDKEQLKFDRVLVDVPCSGD  249 (375)
T ss_pred             ---ccCchhhhhhcceeEEecccCCC
Confidence               0222  22468999999885443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.67  E-value=0.2  Score=47.97  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=26.6

Q ss_pred             HHHHHHHHcCC----CCCCEEEEECCchhHHHHHHHhhC
Q psy17126         39 LTDKIVRNAGT----ITGNEVCEVGPGPGSITRSILNRR   73 (240)
Q Consensus        39 i~~~iv~~~~~----~~~~~VLEIG~GtG~lt~~La~~~   73 (240)
                      .++.|.+.++.    ..-.++||||||+|+++..|++++
T Consensus       101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~  139 (506)
T PF03141_consen  101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN  139 (506)
T ss_pred             HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC
Confidence            45666666654    223678999999999999999884

; GO: 0008168 methyltransferase activity

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=91.60  E-value=0.49  Score=42.05  Aligned_cols=41  Identities=10%  Similarity=0.087  Sum_probs=32.5

Q ss_pred             CCEEEEECCchh----HHHHHHHhhC------CCeEEEEeCCcchHHHHHH
Q psy17126         52 GNEVCEVGPGPG----SITRSILNRR------PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        52 ~~~VLEIG~GtG----~lt~~La~~~------~~~V~avEid~~m~~~l~~   92 (240)
                      .-+|+.+||+||    ++++.|.+..      ..+|+|.|+|...++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            578999999999    4555555543      2589999999999999875

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.57  E-value=0.63  Score=43.44  Aligned_cols=50  Identities=12%  Similarity=0.184  Sum_probs=38.5

Q ss_pred             HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         45 RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      +.+.+.++++||-|.+|-...-..|+. .+++|+|||++|.....++-+.+
T Consensus        29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   29 EALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            446888999999998886666555555 47999999999998877665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=90.53  E-value=2.1  Score=39.31  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             HHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~~   93 (240)
                      +..+.++|++|+=+|+| .|.++..+++....+|+|++.+++-.+.+++.
T Consensus       160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence            34567889998888776 67888899985448999999999998888764

>PTZ00357 methyltransferase; Provisional

Probab=90.52  E-value=0.69  Score=46.33  Aligned_cols=84  Identities=15%  Similarity=0.079  Sum_probs=52.2

Q ss_pred             CEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHH---HhcC-------CCCeEEEEcccccccccccc
Q psy17126         53 NEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDML---AQAS-------PCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~---~~~~-------~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..|+=+|+|-|-|....++..     ..+|+|||.++..+.....+   ...+       +++|++|.+|+..+..+...
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            358999999999986665532     25899999997644333222   1223       34599999999998643210


Q ss_pred             hhh-hcccccCCCCceEEEecCC
Q psy17126        118 SED-RRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       118 ~~~-~~~~~~~~~~~~~VvsNlP  139 (240)
                      ... .+..|   ++.|+|||-|=
T Consensus       782 ~s~~~P~~~---gKaDIVVSELL  801 (1072)
T PTZ00357        782 GSLTLPADF---GLCDLIVSELL  801 (1072)
T ss_pred             ccccccccc---cccceehHhhh
Confidence            000 00111   35789998663

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=90.49  E-value=0.64  Score=41.40  Aligned_cols=39  Identities=15%  Similarity=-0.019  Sum_probs=34.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHH
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL   90 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l   90 (240)
                      ...+||=.|||.|.|+-.++.++ ..|.|.|.|--|+-..
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G-~~~~gnE~S~~Mll~s   94 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLG-YAVQGNEFSYFMLLAS   94 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhcc-ceEEEEEchHHHHHHH
Confidence            45789999999999999999995 6999999999986443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=89.68  E-value=0.66  Score=41.23  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             CEEEEECCchhH--HHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         53 NEVCEVGPGPGS--ITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        53 ~~VLEIG~GtG~--lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      ...||||||.-+  -+-.+++..  .++|+-||.||-.+.+++..+.... +...++++|+.+.+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~  134 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE  134 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence            679999999653  244555432  3799999999999999998775432 23899999998743

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2920|consensus

Probab=88.80  E-value=0.3  Score=43.62  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             HHHHHHHHc--C-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHH
Q psy17126         39 LTDKIVRNA--G-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP   88 (240)
Q Consensus        39 i~~~iv~~~--~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~   88 (240)
                      ++..+.+.+  . ...+++|||+|||+|.....+...+...+...|.+...++
T Consensus       101 l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  101 LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            445555443  2 2468999999999999999888876578999999877763

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=88.65  E-value=0.23  Score=37.68  Aligned_cols=15  Identities=27%  Similarity=0.226  Sum_probs=12.2

Q ss_pred             CceEEEecCCCCCCH
Q psy17126        130 PGIRIIGNLPFNVST  144 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss  144 (240)
                      +||+|||||||.-..
T Consensus         2 kFD~VIGNPPY~~~~   16 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIK   16 (106)
T ss_pred             CcCEEEECCCChhhc
Confidence            479999999996544

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=88.59  E-value=0.29  Score=45.70  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             HHHHHhCchhhhccCccccCCHHHHHHHH---HH----cCC---C-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc
Q psy17126         16 DIIKLYKLRALKQLSQNFLFEPRLTDKIV---RN----AGT---I-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP   84 (240)
Q Consensus        16 ~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv---~~----~~~---~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~   84 (240)
                      +.+.+.|-....+|-+|=..++.++..+.   +.    +..   . ..-+|+|+|||+|..|..+....           
T Consensus        17 ~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~i-----------   85 (386)
T PLN02668         17 KLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVI-----------   85 (386)
T ss_pred             cccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHH-----------
Confidence            34555555566666666444444433332   11    111   1 24689999999999998877652           


Q ss_pred             chHHHHHHHHhc---CCCCeEEEEcccccccccccc
Q psy17126         85 RFTPCLDMLAQA---SPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        85 ~m~~~l~~~~~~---~~~~v~vi~~D~~~~~~~~~~  117 (240)
                        ++..+++...   ..+.++++..|...-||..+|
T Consensus        86 --I~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF  119 (386)
T PLN02668         86 --VKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLF  119 (386)
T ss_pred             --HHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHH
Confidence              2222222211   124588888888776666554

>KOG3178|consensus

Probab=88.16  E-value=0.74  Score=42.26  Aligned_cols=56  Identities=21%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      -...+|+|.|.|.++..++... .+|-+++.|...+-.++....   +.|+.+-||..+-
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~  233 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD  233 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc---CCcceeccccccc
Confidence            4789999999999999999965 589999999888776665442   3388888888764

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.93  E-value=1.1  Score=35.40  Aligned_cols=52  Identities=27%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             EECCchh--HHHHHHHh--hC-CCeEEEEeCCcchHHHHHHH--HhcC--CCCeEEEEccc
Q psy17126         57 EVGPGPG--SITRSILN--RR-PARLVLIEKDPRFTPCLDML--AQAS--PCPVHFHLGDV  108 (240)
Q Consensus        57 EIG~GtG--~lt~~La~--~~-~~~V~avEid~~m~~~l~~~--~~~~--~~~v~vi~~D~  108 (240)
                      |||++.|  ..+..++.  .. ..+|+++|.++..++.++.+  ..-.  ...++++...+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  66665542  22 37899999999999999887  3322  13366665544

; PDB: 2PY6_A.

>KOG2360|consensus

Probab=87.84  E-value=0.84  Score=42.53  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      .+..+...+|.+|+|+.|-+|.=|..++...  -++++|+|.|++-.+.+++.....+ ..+..+.+|++.+.
T Consensus       205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~  277 (413)
T KOG2360|consen  205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA  277 (413)
T ss_pred             hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC
Confidence            3344566788999999999999999988742  3799999999998888877554434 66788899999863

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=87.66  E-value=1.3  Score=35.61  Aligned_cols=54  Identities=13%  Similarity=0.042  Sum_probs=38.7

Q ss_pred             eEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126         76 RLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus        76 ~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +|+|+||.++.++..+++++..+  .++++++.+-.+++  +..+.         ++.+.++-||=|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~--~~i~~---------~~v~~~iFNLGY   56 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD--EYIPE---------GPVDAAIFNLGY   56 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG--GT--S-----------EEEEEEEESB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH--hhCcc---------CCcCEEEEECCc
Confidence            69999999999999999876653  67999999888754  22211         357899999876

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.36  E-value=1.7  Score=42.79  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=36.0

Q ss_pred             CEEEEECCchhHHHHHHHh---hCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         53 NEVCEVGPGPGSITRSILN---RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~---~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      ++|+=+|+|  .++..+++   .....++++|.|++.++.+++      ....++.||+.+.+
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------~g~~v~~GDat~~~  455 (601)
T PRK03659        401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK------YGYKVYYGDATQLE  455 (601)
T ss_pred             CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------CCCeEEEeeCCCHH
Confidence            456666655  44444443   223689999999999888764      24679999998755

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.69  E-value=1.9  Score=41.89  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=62.9

Q ss_pred             CEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ++|+=+|||.  ++..+++.   ....|+.+|.|++.++.+++      ..+.+++||+.+.+.-+...         -.
T Consensus       418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------~g~~~i~GD~~~~~~L~~a~---------i~  480 (558)
T PRK10669        418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE------RGIRAVLGNAANEEIMQLAH---------LD  480 (558)
T ss_pred             CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCeEEEcCCCCHHHHHhcC---------cc
Confidence            5666666664  44444432   13689999999998887763      24789999998743211000         02


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhccccccccchh-h---hhHHHHHHHcCCCCCCCCCCCC
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHK-R---QLVVSLLERACVKPILRPYQLS  187 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~-~---~~~~~~l~~~gi~~~~R~e~ls  187 (240)
                      ..+.++...+-.-..-.+...+...   ..++..+ |   ....+.++++|+|--.-||...
T Consensus       481 ~a~~viv~~~~~~~~~~iv~~~~~~---~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~  539 (558)
T PRK10669        481 CARWLLLTIPNGYEAGEIVASAREK---RPDIEIIARAHYDDEVAYITERGANQVVMGEREI  539 (558)
T ss_pred             ccCEEEEEcCChHHHHHHHHHHHHH---CCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHH
Confidence            4566666555332222222222221   1222222 2   3344557889988776665433

>KOG2352|consensus

Probab=86.69  E-value=1.7  Score=41.57  Aligned_cols=65  Identities=6%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             CCC-EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         51 TGN-EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        51 ~~~-~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      +.+ +++.+|||.=.++..+-+.+-..|+.+|+|+-.++...........-.++...|+..+.+++
T Consensus        47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed  112 (482)
T KOG2352|consen   47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED  112 (482)
T ss_pred             hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence            445 99999999999999998877679999999999988776533233366889999999888765

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=86.38  E-value=3.1  Score=32.84  Aligned_cols=87  Identities=18%  Similarity=0.312  Sum_probs=44.8

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHH-HHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSI-TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~l-t~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ++.|++..   +..+|+|||-|.=.- +..|.+++ ..|+++|+.+.   .+       ...+.++.-|+.+-+++- . 
T Consensus         5 a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~---~a-------~~g~~~v~DDif~P~l~i-Y-   68 (127)
T PF03686_consen    5 AEYIARLN---NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR---KA-------PEGVNFVVDDIFNPNLEI-Y-   68 (127)
T ss_dssp             HHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHH-H-
T ss_pred             HHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc---cc-------ccCcceeeecccCCCHHH-h-
Confidence            44455443   345999999997554 45555565 79999999988   11       134778899998865432 2 


Q ss_pred             hhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHh
Q psy17126        119 EDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~  153 (240)
                                ...++|-| +||--+-.+++ ++...
T Consensus        69 ----------~~a~lIYSiRPP~El~~~il-~lA~~   93 (127)
T PF03686_consen   69 ----------EGADLIYSIRPPPELQPPIL-ELAKK   93 (127)
T ss_dssp             ----------TTEEEEEEES--TTSHHHHH-HHHHH
T ss_pred             ----------cCCcEEEEeCCChHHhHHHH-HHHHH
Confidence                      13467776 77777766654 44443

; PDB: 2K4M_A.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=85.66  E-value=6.5  Score=34.62  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=62.9

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhc----CCCCeEEEEcccccccccccchhhhccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDP-RFTPCLDMLAQA----SPCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~----~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ...|+.+|||.=+....+...  ..+.-+|+|. ++++.=++.+..    ...+.+++..|+. -++.+.+   ...+|.
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L---~~~gfd  155 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAAL---AAAGFD  155 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHH---HhCCCC
Confidence            457999999998888777432  3577788884 444443334443    1367899999987 4443222   122343


Q ss_pred             CCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      ...+...|.-.+-+|++...+.+++.....
T Consensus       156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~  185 (260)
T TIGR00027       156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAE  185 (260)
T ss_pred             CCCCeeeeecchhhcCCHHHHHHHHHHHHH
Confidence            333445566677778999888888776643

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=85.17  E-value=1.1  Score=37.14  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=55.1

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhcCC----CCeEEEEcccccccccccchhhhcccccC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDP-RFTPCLDMLAQASP----CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      ..|+.+|||.=+....+.... ..+.-+|+|. ++++.=++.+....    .+.+++.+|+.+.++.+...   ..+|..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~---~~g~~~  155 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALP---KAGFDP  155 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTT-TTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHH---HCTT-T
T ss_pred             cEEEEcCCCCCchHHHhhccc-cceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHH---HhCCCC
Confidence            489999999999999998753 3677777774 44444333333321    34667999999855433222   234543


Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ..+...|.-.+-+|++..-+..++..
T Consensus       156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~  181 (183)
T PF04072_consen  156 DRPTLFIAEGVLMYLSPEQVDALLRA  181 (183)
T ss_dssp             TSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred             CCCeEEEEcchhhcCCHHHHHHHHHH
Confidence            33444455555566888777777764

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=84.94  E-value=3.5  Score=37.88  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRP-ARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~-~~V~avEid~~m~~~l~~   92 (240)
                      ....+.++.+||.+|||+ |.++..+++... .+|++++.++...+.+++
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            344567889999999998 999999998754 369999999998888775

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2793|consensus

Probab=84.91  E-value=3.2  Score=36.53  Aligned_cols=81  Identities=15%  Similarity=-0.043  Sum_probs=44.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-------cCCCCeEEEEcccccccccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-------ASPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-------~~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ...+|||+|+|+|--+...+......|+.-|+- ..+..++.+..       ..+..+.+..-++......+...     
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~-----  159 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL-----  159 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc-----
Confidence            356799999999976666666544566666654 33444443321       11234555544554432222111     


Q ss_pred             cccCCCCceEEEecCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~  141 (240)
                      +|    ++|+|++.-++|
T Consensus       160 ~~----~~DlilasDvvy  173 (248)
T KOG2793|consen  160 PN----PFDLILASDVVY  173 (248)
T ss_pred             CC----cccEEEEeeeee
Confidence            11    168888887744

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=84.85  E-value=1.5  Score=37.74  Aligned_cols=101  Identities=13%  Similarity=-0.076  Sum_probs=59.7

Q ss_pred             cCccccC----CHHHHHHHHHHcCCCC----CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         29 LSQNFLF----EPRLTDKIVRNAGTIT----GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        29 ~gQ~fl~----d~~i~~~iv~~~~~~~----~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      .||..--    ...+++++.+......    .-++|||||=+......-..  .-.|++||+.+.-              
T Consensus        21 ~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~~--------------   84 (219)
T PF11968_consen   21 QGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQH--------------   84 (219)
T ss_pred             hcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC--ceeeEEeecCCCC--------------
Confidence            4776543    2344555544432222    25899999986554333222  2469999998621              


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCC-CCCHHH-HHHHHHhcc
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPL-IIKWIQAIS  155 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~i-l~~ll~~~~  155 (240)
                      -.|.+.|+++.+++..-          .+.||+|+..|=- ++.+|. --.++....
T Consensus        85 ~~I~qqDFm~rplp~~~----------~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~  131 (219)
T PF11968_consen   85 PGILQQDFMERPLPKNE----------SEKFDVISLSLVLNFVPDPKQRGEMLRRAH  131 (219)
T ss_pred             CCceeeccccCCCCCCc----------ccceeEEEEEEEEeeCCCHHHHHHHHHHHH
Confidence            23779999999886531          1468888877652 245444 444555443

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.60  E-value=3.5  Score=36.88  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++...+|+|+-+|.-|-.|.+++ -.|++||--+ |.+.+-   .  .+.++-...|-.++....             .
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~-ma~sL~---d--tg~v~h~r~DGfk~~P~r-------------~  269 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGP-MAQSLM---D--TGQVTHLREDGFKFRPTR-------------S  269 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcc-eEEEEeccch-hhhhhh---c--ccceeeeeccCcccccCC-------------C
Confidence            588999999999999999999985 7999999654 333222   1  256777777777654311             2


Q ss_pred             CceEEEecCCC--CCCHHHHHHHHHhccccccccchh-------h--------hhHHHHHHHcCCCCCCCCCCC
Q psy17126        130 PGIRIIGNLPF--NVSTPLIIKWIQAISENLLFPKHK-------R--------QLVVSLLERACVKPILRPYQL  186 (240)
Q Consensus       130 ~~~~VvsNlPY--~Iss~il~~ll~~~~~~~~~~~~~-------~--------~~~~~~l~~~gi~~~~R~e~l  186 (240)
                      +.|..|+.+--  .-.+.++.+||...  |+-+..+-       |        +-.++.+.+-|+..+.++.+|
T Consensus       270 ~idWmVCDmVEkP~rv~~li~~Wl~nG--wCre~IfNLKLPMKkRy~Ev~~~L~~~~~~l~~~g~~~~i~aKqL  341 (358)
T COG2933         270 NIDWMVCDMVEKPARVAALIAKWLVNG--WCRETIFNLKLPMKKRYEEVRLCLARLEEQLDEHGINAQIQAKQL  341 (358)
T ss_pred             CCceEEeehhcCcHHHHHHHHHHHHcc--hHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhcCCceeechhhh
Confidence            35666666532  12345677777642  22221110       1        234455667788888877543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=84.57  E-value=4.5  Score=38.24  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             CccccCCHHHHHHHHHHcCC-CCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         30 SQNFLFEPRLTDKIVRNAGT-ITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        30 gQ~fl~d~~i~~~iv~~~~~-~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ...|-+-..+.+.|++..++ .+|++|+=+|+|+ |..+..+++..+.+|+++|.++.-...++.
T Consensus       179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM  243 (413)
T ss_pred             cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence            33344556677888887765 4799999999998 444444555434699999999876655543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=83.91  E-value=3.6  Score=37.61  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             ccCccccCCHHHHH--HHHHHcCCCCCCEEEEECCch-hHHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         28 QLSQNFLFEPRLTD--KIVRNAGTITGNEVCEVGPGP-GSITRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~--~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      .+..-+++++.-+.  ..+......++.+|+=+|||+ |-++..+++. ++.+|+++|.++.-++.+++
T Consensus       143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            34444556665444  333444445556999999998 5556666665 35899999999999998886

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.73  E-value=3.4  Score=38.64  Aligned_cols=135  Identities=16%  Similarity=0.120  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         37 PRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      +.-+..+.+.+..  ....+|+=+|+|  .++..+++.   ....|+.+|.|++.++.+++.    ..++.++.||+.+.
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~----~~~~~~i~gd~~~~  287 (453)
T PRK09496        214 REHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEE----LPNTLVLHGDGTDQ  287 (453)
T ss_pred             HHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----CCCCeEEECCCCCH
Confidence            3344555444332  234678888875  555444442   136899999999988777652    13578899999764


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHH-HhccccccccchhhhhHHHHHHHcCCCCCCCCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVSLLERACVKPILRPYQLS  187 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~R~e~ls  187 (240)
                      ..  +...       +-...+.||+-.+-. ..-++..++ .....-.+-+........+.+..+|++--..|+.+.
T Consensus       288 ~~--L~~~-------~~~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~  354 (453)
T PRK09496        288 EL--LEEE-------GIDEADAFIALTNDD-EANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPRQAT  354 (453)
T ss_pred             HH--HHhc-------CCccCCEEEECCCCc-HHHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHHHHH
Confidence            31  1100       012456677655532 233332222 222111111111113344567888877655555443

>KOG1269|consensus

Probab=82.42  E-value=1.1  Score=41.55  Aligned_cols=69  Identities=20%  Similarity=0.276  Sum_probs=51.8

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccccc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~  116 (240)
                      ...++..++|+|||.|..+..++......+++++.++-.+..........  ..+-.++.+|+.+.++++.
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn  177 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN  177 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcc
Confidence            34677899999999999999999875579999999988776665533221  2344458889998887653

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=82.27  E-value=6.6  Score=36.84  Aligned_cols=139  Identities=9%  Similarity=0.023  Sum_probs=84.3

Q ss_pred             CEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126         53 NEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE  127 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~  127 (240)
                      .+||=||||  ..+...    ++++..+|+..|.+.+-+..+....   ..+++.++-|+.+.+ +.++.          
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---~~~v~~~~vD~~d~~al~~li----------   66 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---GGKVEALQVDAADVDALVALI----------   66 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---cccceeEEecccChHHHHHHH----------
Confidence            468899995  444433    3343369999999988877765432   357999999998863 22333          


Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHhccccccccch-----hh--hhHHH----HHHHcCCCCCCCCCCCCHHHHHHHHH
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKH-----KR--QLVVS----LLERACVKPILRPYQLSVQEFGQICL  196 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~-----~~--~~~~~----~l~~~gi~~~~R~e~ls~~~f~~L~~  196 (240)
                       ..+|+||+-+||+....++...++..-. +++...     ++  +.+.+    .+-.+|++|..--         .++.
T Consensus        67 -~~~d~VIn~~p~~~~~~i~ka~i~~gv~-yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~n---------v~a~  135 (389)
T COG1748          67 -KDFDLVINAAPPFVDLTILKACIKTGVD-YVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITN---------VLAA  135 (389)
T ss_pred             -hcCCEEEEeCCchhhHHHHHHHHHhCCC-EEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHH---------HHHH
Confidence             2459999999999998777666665433 222111     11  11111    2446788887763         2333


Q ss_pred             HHHHHHh-hCCCeeeEeccCCC
Q psy17126        197 AYRDMCE-EMPGLYEYTLEDTP  217 (240)
Q Consensus       197 ~l~~~~~-~~p~~~~~~~~~~~  217 (240)
                      ...++.. +.-.+.+|+=-.+.
T Consensus       136 ~a~~~~~~~i~si~iy~g~~g~  157 (389)
T COG1748         136 YAAKELFDEIESIDIYVGGLGE  157 (389)
T ss_pred             HHHHHhhccccEEEEEEecCCC
Confidence            2223333 66677787744443

>KOG1596|consensus

Probab=81.26  E-value=4  Score=36.05  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             HHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-
Q psy17126         39 LTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-  112 (240)
Q Consensus        39 i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-  112 (240)
                      +++.|+-   .+-++++.+||=+|+++|.-...++...  ..-|+|||.++..=..+-..+ ....|+--|..|+.... 
T Consensus       141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA-kkRtNiiPIiEDArhP~K  219 (317)
T KOG1596|consen  141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA-KKRTNIIPIIEDARHPAK  219 (317)
T ss_pred             HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh-hccCCceeeeccCCCchh
Confidence            4455542   3346899999999999999988887753  268999999987544433222 22367878888887531 


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.-+.           +-.|.|++.+|-
T Consensus       220 YRmlV-----------gmVDvIFaDvaq  236 (317)
T KOG1596|consen  220 YRMLV-----------GMVDVIFADVAQ  236 (317)
T ss_pred             eeeee-----------eeEEEEeccCCC
Confidence            11222           235888988654

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=80.99  E-value=1.2  Score=32.20  Aligned_cols=55  Identities=18%  Similarity=0.257  Sum_probs=42.1

Q ss_pred             CCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCC-CCCEEEEE--CCchhH
Q psy17126         10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTI-TGNEVCEV--GPGPGS   64 (240)
Q Consensus        10 ~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~-~~~~VLEI--G~GtG~   64 (240)
                      ++..+|++++.+|....+.+.++|-+++..++.|++..... .-.+|.+-  ||++|.
T Consensus         3 ~L~qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~sGs   60 (78)
T PRK15431          3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGS   60 (78)
T ss_pred             cHHHHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCCCCC
Confidence            45678999999999999999999999999999999876432 22344323  787773

>PRK07454 short chain dehydrogenase; Provisional

Probab=80.90  E-value=11  Score=31.56  Aligned_cols=84  Identities=11%  Similarity=0.004  Sum_probs=48.6

Q ss_pred             CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      ...++|=.|+ +|.++..++    +++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.+ +...+... ...+
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAEL-LEQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHH-HHHc
Confidence            3467888885 555554444    444 59999999876555444433333457889999998753 11111110 0111


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         ++.|.||.|.-+
T Consensus        82 ---~~id~lv~~ag~   93 (241)
T PRK07454         82 ---GCPDVLINNAGM   93 (241)
T ss_pred             ---CCCCEEEECCCc
Confidence               346888877643

>PRK07904 short chain dehydrogenase; Provisional

Probab=80.77  E-value=11  Score=32.22  Aligned_cols=85  Identities=15%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             CCCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcch-HHHHHHHHhcCC-CCeEEEEccccccc-ccccchhhhc
Q psy17126         50 ITGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRF-TPCLDMLAQASP-CPVHFHLGDVMSFT-MQNMFSEDRR  122 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m-~~~l~~~~~~~~-~~v~vi~~D~~~~~-~~~~~~~~~~  122 (240)
                      ..+.+||=.|++ |.++..++    ++++.+|++++.++.- ++.+.+.....+ .+++++.+|+.+.+ ..+.+...  
T Consensus         6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~--   82 (253)
T PRK07904          6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA--   82 (253)
T ss_pred             CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH--
Confidence            456789999985 44554444    4433689999888763 444433332222 37899999997643 11122211  


Q ss_pred             ccccCCCCceEEEecCCC
Q psy17126        123 RDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlPY  140 (240)
                        +. .+..|.+|.|...
T Consensus        83 --~~-~g~id~li~~ag~   97 (253)
T PRK07904         83 --FA-GGDVDVAIVAFGL   97 (253)
T ss_pred             --Hh-cCCCCEEEEeeec
Confidence              11 1357888877654

>KOG1331|consensus

Probab=80.33  E-value=1  Score=40.38  Aligned_cols=66  Identities=12%  Similarity=0.082  Sum_probs=46.6

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      +...+....  .+..++|+|||.|-++..=   ....+++.|+...++..++.    . +...+..+|++++++.+
T Consensus        36 v~qfl~~~~--~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~----~-~~~~~~~ad~l~~p~~~  101 (293)
T KOG1331|consen   36 VRQFLDSQP--TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR----S-GGDNVCRADALKLPFRE  101 (293)
T ss_pred             HHHHHhccC--CcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc----C-CCceeehhhhhcCCCCC
Confidence            444444433  4789999999999875432   23579999999998887763    1 22267889999988765

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=80.17  E-value=6.8  Score=34.31  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      .+..+..+++.. .-.+++.|||.=+|+|......... ...++++|+++..++.+.++...
T Consensus       207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHh
Confidence            344577777777 4568999999999999988877766 47999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		6e-11
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		7e-11
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		5e-09
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		3e-05
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		3e-05
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		5e-05
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		5e-05
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		1e-04
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		2e-04
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		2e-04
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		3e-04
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		5e-04

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13  SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
           S+R +++ + L A K+  QNFL       +IV  A   TG  V EVGPG G++TR++L  
Sbjct: 9   SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73  RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
             A +  IEKD R  P L+     S  PV     D + +             W E   G 
Sbjct: 68  -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
            ++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13  SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
           S+R +++ + L A K+  QNFL       +IV  A   TG  V EVGPG G++TR++L  
Sbjct: 9   SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73  RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
             A +  IEKD R  P L+     S  PV     D + +             W E   G 
Sbjct: 68  -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
            ++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 25  ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
           A K+  QNFL +  + D IV       G  + E+GPG G++T  ++ R      P   V 
Sbjct: 16  ARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
Query: 80  IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
           +++D      +  L Q     +  H GD ++F   ++      R   E  P +RIIGNLP
Sbjct: 76  LDRD-----LIGRLEQRFGELLELHAGDALTFDFGSI-----ARPGDE--PSLRIIGNLP 123
Query: 140 FNVSTPLIIKWIQ 152
           +N+S+PL+   + 
Sbjct: 124 YNISSPLLFHLMS 136

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           QNFL +  + D IV       G  + E+GPG  ++T  +   R  +L +IE D      L
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPV-GERLDQLTVIELDRDLAARL 59
Query: 91  DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL---I 147
                  P  +  +  D M+F     F E   +    G P +R+ GNLP+N+STPL   +
Sbjct: 60  QTHPFLGP-KLTIYQQDAMTFN----FGELAEK---MGQP-LRVFGNLPYNISTPLMFHL 110
Query: 148 IKWIQAISE 156
             +  AI++
Sbjct: 111 FSYTDAIAD 119

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 25  ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
           A K+  QNFL +  + D IV       G  + E+GPG  ++T  +   R  +L +IE D 
Sbjct: 11  ARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPV-GERLDQLTVIELD- 68
Query: 85  RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144
                 D+ A+    P    LG  ++   Q+  + +      +    +R+ GN P+N+ST
Sbjct: 69  -----RDLAARLQTHPF---LGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNIST 120
Query: 145 PL---IIKWIQAISE 156
           PL   +  +  AI++
Sbjct: 121 PLMFHLFSYTDAIAD 135

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 27  KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
           K+  Q+FL +  +  KIV        + + E+GPG G++T  +L      L L+E D   
Sbjct: 5   KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDL 63
Query: 87  TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
              L          +  +  D + F   ++ ++            +R++GNLP+N+STPL
Sbjct: 64  VAFLQKKYNQQKN-ITIYQNDALQFDFSSVKTDK----------PLRVVGNLPYNISTPL 112
Query: 147 IIKWIQAI 154
           +      I
Sbjct: 113 LFHLFSQI 120

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 27  KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
           K+L Q FL +    +K V +A     + V E+G G G +T   L +   ++ +IE D   
Sbjct: 26  KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSL 84
Query: 87  TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
            P  + L +     +    GD +   +  +       D++      +++ NLP+ +S+P+
Sbjct: 85  EPYANKLKELY-NNIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPI 130
Query: 147 IIKWIQ 152
             K I+
Sbjct: 131 TFKLIK 136

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 29  LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88
           + Q+ L  P + + I+  A     + V EVGPG G++T  +L  +  ++V  E DPR   
Sbjct: 6   IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVA 64
Query: 89  CLDMLAQASPCPVHFH--LGDVMSFTMQNMFSEDRRRDWSEGLPGIRI-IGNLPFNVSTP 145
            L    Q +P        +GDV+                   LP     + NLP+ +S+P
Sbjct: 65  ELHKRVQGTPVASKLQVLVGDVL----------------KTDLPFFDTCVANLPYQISSP 108
Query: 146 LIIKWI 151
            + K +
Sbjct: 109 FVFKLL 114

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +R  K   Q+ L    +  KI        GN V EVG G G++T+ +L     +L +IE 
Sbjct: 3   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 83  DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
           D      L  +       ++    D   F   ++  E            ++++GNLP+NV
Sbjct: 63  DREMVENLKSIGDERLEVIN---EDASKFPFCSLGKE------------LKVVGNLPYNV 107
Query: 143 STPLI 147
           ++ +I
Sbjct: 108 ASLII 112

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +R  K   Q+ L    +  KI        GN V EVG G G++T+ +L     +L +IE 
Sbjct: 2   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61
Query: 83  DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
           D      L  +       ++    D   F   ++  E            ++++GNLP+NV
Sbjct: 62  DREMVENLKSIGDERLEVIN---EDASKFPFCSLGKE------------LKVVGNLPYNV 106
Query: 143 STPLI 147
           ++ +I
Sbjct: 107 ASLII 111

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 30  SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89
           +Q FL +    +K V +A     + V E+G G G +T   L +   ++ +IE D    P 
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSLEPY 60
Query: 90  LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIK 149
            + L +     +    GD +   +  +       D++      +++ NLP+ +S+P+  K
Sbjct: 61  ANKLKELYN-NIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPITFK 106
Query: 150 WIQ 152
            I+
Sbjct: 107 LIK 109

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           Q FL +    +K V +A     + V E+G G G +T   L +   ++ +IE D    P  
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSLEPYA 59
Query: 91  DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
           + L +     +    GD +   +  +       D++      +++ NLP+ +S+P+  K 
Sbjct: 60  NKLKELYN-NIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPITFKL 105
Query: 151 IQ 152
           I+
Sbjct: 106 IK 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	3e-36
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	6e-36
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	4e-32
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	3e-28
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	5e-27
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	3e-25
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	5e-25
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	1e-23
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	7e-23
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	5e-22
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	4e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  130 bits (327), Expect = 3e-36
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 28/229 (12%)

Query: 10  PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIV------RNAGTITGNEVCEVGPGPG 63
           P+P I+DI KL            +L+ P + +KI       +        +V ++ PG G
Sbjct: 16  PIPGIKDISKLKFF-----YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVG 70

Query: 64  SITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF-TMQNMFSED- 120
             +    N+  P +  L+EK       L+   + SP  +     D   + T  N+  E+ 
Sbjct: 71  IQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSNLIDEER 128

Query: 121 ----RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---- 172
                 +           + N+    S  LI++W+  I       +  +  ++  +    
Sbjct: 129 IFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTT 188

Query: 173 -ERACVKPILRPYQ-LSV--QEFGQICLAYRDMCEEMPGLYEYTLEDTP 217
             +   +P +      SV  + F    L       E+ G     +E+  
Sbjct: 189 ARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWD 237

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  127 bits (321), Expect = 6e-36
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 12  PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
            S+R +++ + L A K+  QNFL       +IV  A       V EVGPG G++TR++L 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAAR-PFTGPVFEVGPGLGALTRALL- 65

Query: 72  RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
              A +  IEKD R  P L+     S  PV     D + +             W E   G
Sbjct: 66  EAGAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQG 111

Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
             ++ NLP++++TPL+ + ++ 
Sbjct: 112 SLLVANLPYHIATPLVTRLLKT 133

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  117 bits (295), Expect = 4e-32
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 13  SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
           S+ +  +     A K+  QNFL +  + D IV       G  + E+GPG G++T  ++ R
Sbjct: 4   SMSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR 63

Query: 73  ---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
                + L  +E D      +  L Q     +  H GD ++F   ++             
Sbjct: 64  LATPGSPLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFGSIARPG-------DE 113

Query: 130 PGIRIIGNLPFNVSTPLIIKWI 151
           P +RIIGNLP+N+S+PL+   +
Sbjct: 114 PSLRIIGNLPYNISSPLLFHLM 135

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  106 bits (267), Expect = 3e-28
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%)

Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +R  K   Q+ L    +  KI        GN V EVG G G++T+ +L     +L +IE 
Sbjct: 3   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62

Query: 83  DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
           D      ++ L       +     D   F             +      ++++GNLP+NV
Sbjct: 63  DRE---MVENLKSIGDERLEVINEDASKF------------PFCSLGKELKVVGNLPYNV 107

Query: 143 STPLIIKWIQ 152
           ++ +I   + 
Sbjct: 108 ASLIIENTVY 117

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  103 bits (259), Expect = 5e-27
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           QNFL +  + D IV       G  + E+GPG  ++T  +   R  +L +IE D      L
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARL 59

Query: 91  DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
                  P  +  +  D M+F    +  +  +         +R+ GNLP+N+STPL+   
Sbjct: 60  QTHPFLGP-KLTIYQQDAMTFNFGELAEKMGQP--------LRVFGNLPYNISTPLMFHL 110

Query: 151 IQ 152
             
Sbjct: 111 FS 112

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score = 99.6 bits (249), Expect = 3e-25
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 13  SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
           S       +  +  K+L Q FL +    +K V +A     + V E+G G G +T  +  +
Sbjct: 12  SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELA-K 70

Query: 73  RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
              ++ +IE D    P  + L +     +    GD +              D ++ L   
Sbjct: 71  NAKKVYVIEIDKSLEPYANKLKELYN-NIEIIWGDALKV------------DLNK-LDFN 116

Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
           +++ NLP+ +S+P+  K I+
Sbjct: 117 KVVANLPYQISSPITFKLIK 136

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score = 98.3 bits (246), Expect = 5e-25
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +   K+  Q+FL +  +  KIV        + + E+GPG G++T  +L      L L+E 
Sbjct: 1   MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLL-TECDNLALVEI 59

Query: 83  DPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
           D      L    + +    +  +  D + F   ++ ++            +R++GNLP+N
Sbjct: 60  DRDLVAFLQ--KKYNQQKNITIYQNDALQFDFSSVKTDKP----------LRVVGNLPYN 107

Query: 142 VSTPLIIKWI 151
           +STPL+    
Sbjct: 108 ISTPLLFHLF 117

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 17/130 (13%)

Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +    + SQNFL   ++ ++I++       + V E+G G G +T  +  +   ++  IE 
Sbjct: 1   MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLA-KISKQVTSIEL 59

Query: 83  DPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
           D           +      V     D++ F             +       +I+GN+P++
Sbjct: 60  DSHLFNLSS--EKLKLNTRVTLIHQDILQF------------QFPNKQR-YKIVGNIPYH 104

Query: 142 VSTPLIIKWI 151
           +ST +I K +
Sbjct: 105 LSTQIIKKVV 114

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score = 92.2 bits (230), Expect = 7e-23
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 24  RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
               + SQNF+      DKI+ N      + + E+G G G  T  ++ +R   +  IE D
Sbjct: 3   EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEID 61

Query: 84  PRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
            +     +   +            D++ F             + +     +I GN+P+N+
Sbjct: 62  HKLCKTTE--NKLVDHDNFQVLNKDILQF------------KFPKNQS-YKIFGNIPYNI 106

Query: 143 STPLIIKWIQ 152
           ST +I K + 
Sbjct: 107 STDIIRKIVF 116

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score = 90.9 bits (226), Expect = 5e-22
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 17/135 (12%)

Query: 19  KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
                  L    Q+ L  P + DKI+  A   + + V E+G G G++T  +L     +++
Sbjct: 10  HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLL-PLAKKVI 68

Query: 79  LIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
            I+ D R    +           +  + GD +               + +         N
Sbjct: 69  TIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT------------VFPK---FDVCTAN 113

Query: 138 LPFNVSTPLIIKWIQ 152
           +P+ +S+PLI K I 
Sbjct: 114 IPYKISSPLIFKLIS 128

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score = 85.5 bits (212), Expect = 4e-20
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 18/130 (13%)

Query: 25  ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
           +   + Q+ L  P + + I+  A     + V EVGPG G++T  +L  +  ++V  E DP
Sbjct: 2   SNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDP 60

Query: 85  RFTPCLDMLAQASPCP--VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
           R    L    Q +P    +   +GDV+              D          + NLP+ +
Sbjct: 61  RLVAELHKRVQGTPVASKLQVLVGDVLKT------------DLPF---FDTCVANLPYQI 105

Query: 143 STPLIIKWIQ 152
           S+P + K + 
Sbjct: 106 SSPFVFKLLL 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 47/320 (14%), Positives = 79/320 (24%), Gaps = 111/320 (34%)

Query: 9   PPMPSIRDIIKLYKLR--ALKQLSQNFLFEPR-------LTDKIVRNAGTITGNEV-CE- 57
           P   S  D     KLR  +++   +  L           L +  V+NA       + C+ 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268

Query: 58  -VGPGPGSITRSILNRRPARLVLIEKDPRFTP---------CLDMLAQASP---CPVH-F 103
            +      +T  +       + L       TP          LD   Q  P      +  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 104 HLG---------------------DVMSFTMQ---NMFSEDRRRDWSEGLPGIRIIGNLP 139
            L                      D ++  ++   N+      R   + L  +      P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SV-----FP 382

Query: 140 FNVSTP---LIIKWIQAISE------NLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
            +   P   L + W   I        N L   HK     SL+E+   +  +    +    
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKY----SLVEKQPKESTISIPSIY--- 432

Query: 191 FGQICLAYRDMCEEMPGL-------YEYTLEDTPGDIEPEAV--------------AEQE 229
                L  +   E    L       Y         D+ P  +               E  
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 230 GEGDE-----IDF----NKL 240
                     +DF     K+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	100.0
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	100.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	100.0
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	100.0
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.97
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.96
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.96
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.94
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	99.93
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.93
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.92
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.63
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.54
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.49
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.46
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.46
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.43
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.43
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.43
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.42
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.41
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.41
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.41
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.4
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.4
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.4
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.38
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.38
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.38
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.38
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.37
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.36
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.36
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.35
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.35
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.35
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.34
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.34
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.34
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.34
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.34
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.33
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.33
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.33
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.32
3lkd_A	542	Type I restriction-modification system methyltrans	99.32
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.32
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.32
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.32
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.31
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.3
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.3
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.3
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.29
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.29
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.29
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.29
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.28
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.28
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.28
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.28
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.27
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.27
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.27
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.27
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.27
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.26
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.26
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.26
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.26
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.26
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.26
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.26
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.25
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.25
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.25
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.25
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.25
3khk_A	544	Type I restriction-modification system methylation	99.24
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.24
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.24
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.24
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.24
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.23
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.23
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.23
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.23
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.23
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.23
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.23
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.22
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.22
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.22
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.22
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.21
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.21
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.21
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.21
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.21
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.2
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.2
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.2
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.2
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.2
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.19
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.19
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.19
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.19
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.19
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.19
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.18
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.18
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.18
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.18
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.18
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.18
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.18
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.17
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.17
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.17
3ufb_A	530	Type I restriction-modification system methyltran	99.17
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.17
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.16
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.16
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.16
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.16
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.16
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.16
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.16
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.15
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.15
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.15
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.15
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.15
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.15
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.14
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.14
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.14
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.14
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.14
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.13
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.13
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.13
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.13
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.13
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.13
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.13
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.12
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.12
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.12
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.12
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.12
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.11
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.11
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.1
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.1
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.1
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.1
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.1
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.1
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.09
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.09
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.09
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.08
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.08
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.07
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.07
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.07
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.07
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.07
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.07
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.06
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.06
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.06
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.03
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.03
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.03
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.02
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.02
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.02
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.02
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.02
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.02
3ocj_A	305	Putative exported protein; structural genomics, PS	99.01
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.0
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.99
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.99
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.99
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.99
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.98
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.98
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.98
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.98
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.98
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.97
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.95
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.95
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.94
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.93
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.92
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.92
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.91
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.9
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.9
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.9
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.9
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.9
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.88
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.88
2o07_A	304	Spermidine synthase; structural genomics, structur	98.87
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.87
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.86
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.86
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.85
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.84
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.84
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.83
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.82
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.82
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.82
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.82
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.8
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.8
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.8
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.79
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.79
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.79
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.78
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.77
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.76
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.75
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.75
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.73
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.72
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.71
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.67
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.66
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.65
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.64
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.63
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.63
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.62
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.6
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.58
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.55
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.48
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.48
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.46
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.46
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.45
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.38
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.37
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.34
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.32
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.31
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.31
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.28
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.28
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.18
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.1
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.1
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.03
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.93
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.73
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.71
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.66
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.64
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.57
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.54
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.54
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.47
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.32
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.29
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.18
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.06
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.97
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.97
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.9
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.89
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.86
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.83
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.38
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.36
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.94
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.79
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	95.75
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.66
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.58
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.54
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.34
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.18
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.04
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.69
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	92.64
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	92.05
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.68
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.61
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.34
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	91.23
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	91.15
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.03
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	90.72
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.48
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.4
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.12
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.03
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.83
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	89.75
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.53
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.48
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.43
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.25
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.25
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.17
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	89.03
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.84
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.75
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	88.75
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.74
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	88.65
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	88.27
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	88.24
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	88.24
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.11
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	87.99
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	87.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.76
3gms_A	340	Putative NADPH:quinone reductase; structural genom	87.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	87.48
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	87.48
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	87.11
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.04
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.03
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	86.86
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	86.78
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.71
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	86.5
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	86.13
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	86.09
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	86.09
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	86.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.92
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.89
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	85.87
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	85.8
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.73
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	85.67
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	85.66
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	85.58
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	85.55
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.53
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.5
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	85.4
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.39
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.37
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	85.33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	85.3
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	84.89
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	84.76
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	84.71
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	84.63
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	84.59
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.48
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	84.45
3rih_A	293	Short chain dehydrogenase or reductase; structural	84.43
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.39
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	84.35
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	84.35
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	84.31
3cxt_A	291	Dehydrogenase with different specificities; rossma	84.26
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	84.08
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.94
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	83.93
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	83.92
1xkq_A	280	Short-chain reductase family member (5D234); parra	83.75
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	83.58
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	83.54
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	83.45
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	83.38
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	83.26
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	83.07
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	82.93
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	82.76
4eye_A	342	Probable oxidoreductase; structural genomics, niai	82.65
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	82.65
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	82.55
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	82.54
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	82.4
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	82.2
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	82.2
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	82.19
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.04
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	81.97
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	81.89
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	81.78
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.75
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	81.57
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	81.55
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.55
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	81.02
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	80.99
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	80.75
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.56
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	80.48
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	80.46
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	80.38
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	80.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	80.28
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	80.08

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=100.00  E-value=2.1e-35  Score=259.87  Aligned_cols=176  Identities=28%  Similarity=0.458  Sum_probs=151.1

Q ss_pred             CCCCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchH
Q psy17126          8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFT   87 (240)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~   87 (240)
                      +-.++++++++++|+++++|+|||||++|+.++++|++.+++.++ +|||||||+|.+|..|++++ .+|+|||+|++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~   81 (271)
T 3fut_A            4 LASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLR   81 (271)
T ss_dssp             -CCHHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGH
T ss_pred             ccCHHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHH
Confidence            444567999999999999999999999999999999999999999 99999999999999999985 7999999999999


Q ss_pred             HHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc-----------
Q psy17126         88 PCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-----------  156 (240)
Q Consensus        88 ~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~-----------  156 (240)
                      +.++++..  ..+++++++|++++++++..            .++.|||||||+|++|++++|+++ ..           
T Consensus        82 ~~l~~~~~--~~~v~vi~~D~l~~~~~~~~------------~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkE  146 (271)
T 3fut_A           82 PVLEETLS--GLPVRLVFQDALLYPWEEVP------------QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKE  146 (271)
T ss_dssp             HHHHHHTT--TSSEEEEESCGGGSCGGGSC------------TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHH
T ss_pred             HHHHHhcC--CCCEEEEECChhhCChhhcc------------CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeee
Confidence            99998765  36899999999999876531            468999999999999999999987 32           


Q ss_pred             ----------------------cccccchh--------------------------------------------------
Q psy17126        157 ----------------------NLLFPKHK--------------------------------------------------  164 (240)
Q Consensus       157 ----------------------~~~~~~~~--------------------------------------------------  164 (240)
                                            ++|+++.+                                                  
T Consensus       147 va~Rl~A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~~~~~~~~v~~~F~~rrKtL~n~  226 (271)
T 3fut_A          147 VAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGALDDPGLFRLVEAAFGKRRKTLLNA  226 (271)
T ss_dssp             HHHHHTCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCCCCHHHHHHHHHHTSSTTSCHHHH
T ss_pred             eeeecccCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCcEEEEEEEECCCCcHHHHHHHHHHHHhcCCcHHHHH
Confidence                                  34444333                                                  


Q ss_pred             -h------hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126        165 -R------QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       165 -~------~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~  200 (240)
                       +      +...++++.+||+++.|||+||++||.+|++.+..
T Consensus       227 L~~~~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~  269 (271)
T 3fut_A          227 LAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG  269 (271)
T ss_dssp             HHHTTCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred             HHhhcCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence             0      12345688999999999999999999999998743

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=2e-33  Score=245.11  Aligned_cols=120  Identities=28%  Similarity=0.490  Sum_probs=100.8

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEE
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHF  103 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~v  103 (240)
                      +++|+|||||++|+.++++|++.+++.++++|||||||+|.+|..|++++ .+|+|||+|++|++.++++... .+++++
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~v~~   79 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKNITI   79 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTTEEE
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCCcEE
Confidence            67899999999999999999999999999999999999999999999985 7999999999999999987754 478999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                      +++|++++++++++..         +++ .|||||||+|++|++++|++...
T Consensus        80 i~~D~~~~~~~~~~~~---------~~~-~vv~NlPY~is~~il~~ll~~~~  121 (255)
T 3tqs_A           80 YQNDALQFDFSSVKTD---------KPL-RVVGNLPYNISTPLLFHLFSQIH  121 (255)
T ss_dssp             EESCTTTCCGGGSCCS---------SCE-EEEEECCHHHHHHHHHHHHHTGG
T ss_pred             EEcchHhCCHHHhccC---------CCe-EEEecCCcccCHHHHHHHHhCCC
Confidence            9999999988765321         234 49999999999999999998643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=100.00  E-value=2.2e-33  Score=247.93  Aligned_cols=124  Identities=31%  Similarity=0.509  Sum_probs=104.2

Q ss_pred             hCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCe----EEEEeCCcchHHHHHHHHhc
Q psy17126         21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR----LVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        21 ~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~----V~avEid~~m~~~l~~~~~~   96 (240)
                      .+++++|+|||||++|+.++++|++.+++.++++|||||||+|.+|..|++++ .+    |+|||+|++|++.++++.  
T Consensus        12 ~~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~--   88 (279)
T 3uzu_A           12 QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF--   88 (279)
T ss_dssp             ------CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH--
T ss_pred             cCCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc--
Confidence            48899999999999999999999999999999999999999999999999985 46    999999999999999873  


Q ss_pred             CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126         97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus        97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                       .++++++++|++++++++++..       .....+.|||||||+|++|++++|+++..
T Consensus        89 -~~~v~~i~~D~~~~~~~~~~~~-------~~~~~~~vv~NlPY~iss~il~~ll~~~~  139 (279)
T 3uzu_A           89 -GELLELHAGDALTFDFGSIARP-------GDEPSLRIIGNLPYNISSPLLFHLMSFAP  139 (279)
T ss_dssp             -GGGEEEEESCGGGCCGGGGSCS-------SSSCCEEEEEECCHHHHHHHHHHHGGGGG
T ss_pred             -CCCcEEEECChhcCChhHhccc-------ccCCceEEEEccCccccHHHHHHHHhccC
Confidence             4689999999999998775421       00135789999999999999999998653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=100.00  E-value=2.8e-32  Score=242.58  Aligned_cols=127  Identities=24%  Similarity=0.385  Sum_probs=99.3

Q ss_pred             ccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHH
Q psy17126         12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLD   91 (240)
Q Consensus        12 ~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~   91 (240)
                      |..-+...+|+++++|+|||||++|+.++++|++.+.+.++++|||||||+|.+|..|+++ +.+|+|||+|++|++.++
T Consensus        11 ~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~   89 (295)
T 3gru_A           11 SSGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYAN   89 (295)
T ss_dssp             -------------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHH
T ss_pred             cchhchhHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHH
Confidence            4456678899999999999999999999999999999999999999999999999999998 479999999999999999


Q ss_pred             HHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126         92 MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus        92 ~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ++... .++++++++|++++++++             .++|+||+|+||+|++|++++|++.
T Consensus        90 ~~~~~-~~~v~vi~gD~l~~~~~~-------------~~fD~Iv~NlPy~is~pil~~lL~~  137 (295)
T 3gru_A           90 KLKEL-YNNIEIIWGDALKVDLNK-------------LDFNKVVANLPYQISSPITFKLIKR  137 (295)
T ss_dssp             HHHHH-CSSEEEEESCTTTSCGGG-------------SCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred             HHhcc-CCCeEEEECchhhCCccc-------------CCccEEEEeCcccccHHHHHHHHhc
Confidence            88753 368999999999987654             2579999999999999999999985

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.97  E-value=2.4e-31  Score=231.10  Aligned_cols=163  Identities=25%  Similarity=0.357  Sum_probs=133.0

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      ++++|+|||||++|+.++++|++.+++.++++|||||||+|.+|..++++++.+|+|||+|+.|++.++++ .  ..+++
T Consensus         3 ~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~--~~~v~   79 (249)
T 3ftd_A            3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G--DERLE   79 (249)
T ss_dssp             -----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C--CTTEE
T ss_pred             CCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c--CCCeE
Confidence            67899999999999999999999999999999999999999999999998547999999999999999876 2  36899


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------------------------
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------------------------  156 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------------------------  156 (240)
                      ++++|++++++++..           + ...||+|+||+|++|+++++++....                          
T Consensus        80 ~i~~D~~~~~~~~~~-----------~-~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~a~k~yg~ls  147 (249)
T 3ftd_A           80 VINEDASKFPFCSLG-----------K-ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLS  147 (249)
T ss_dssp             EECSCTTTCCGGGSC-----------S-SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHHTSSCCCHHH
T ss_pred             EEEcchhhCChhHcc-----------C-CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhhccccccHHH
Confidence            999999999887642           1 46899999999999999999987532                          


Q ss_pred             ----cccccchh--------------------------------------------------h-hhHHHHHHHcCCCCCC
Q psy17126        157 ----NLLFPKHK--------------------------------------------------R-QLVVSLLERACVKPIL  181 (240)
Q Consensus       157 ----~~~~~~~~--------------------------------------------------~-~~~~~~l~~~gi~~~~  181 (240)
                          ++|+++.+                                                  + .+..-.+..+||+++.
T Consensus       148 v~~q~~~~~~~~~~v~~~~F~P~PkV~savv~l~~~~~~~~~~~~~~~~~v~~~F~~rrk~l~~~l~~~~l~~~~i~~~~  227 (249)
T 3ftd_A          148 VFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEELLKEAGINPDA  227 (249)
T ss_dssp             HHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCCCHHHHHHHHHHHHSSTTSCGGGTSCHHHHHHTTCCTTC
T ss_pred             HHHHhHEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCcchHHHHHHHHHHHHhCcChhHHHHHHHHHHHHCCCCCCC
Confidence                33443322                                                  0 0111157889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q psy17126        182 RPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       182 R~e~ls~~~f~~L~~~l~~  200 (240)
                      |||+||++||..|++.+..
T Consensus       228 r~e~l~~~~f~~l~~~~~~  246 (249)
T 3ftd_A          228 RVEQLSLEDFFKLYRLIED  246 (249)
T ss_dssp             CGGGCCHHHHHHHHHHHHC
T ss_pred             ChhhCCHHHHHHHHHHHHH
Confidence            9999999999999998753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.96  E-value=9e-29  Score=213.70  Aligned_cols=163  Identities=20%  Similarity=0.199  Sum_probs=126.8

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH  102 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~  102 (240)
                      ++++|+|||||++|+.+++.|++.+++.++++|||||||+|.+|..+++++ .+|+|||+|+.|++.++++... .++++
T Consensus         2 ~~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-~~~v~   79 (244)
T 1qam_A            2 NEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-HDNFQ   79 (244)
T ss_dssp             --------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-CCSEE
T ss_pred             CCCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-CCCeE
Confidence            367899999999999999999999998889999999999999999999986 7999999999999999987653 26899


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------------------------
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------------------------  156 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------------------------  156 (240)
                      ++++|+.++++++             +..+.||+|+||+++++++.+++++...                          
T Consensus        80 ~~~~D~~~~~~~~-------------~~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  146 (244)
T 1qam_A           80 VLNKDILQFKFPK-------------NQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFL  146 (244)
T ss_dssp             EECCCGGGCCCCS-------------SCCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHHH
T ss_pred             EEEChHHhCCccc-------------CCCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHHh
Confidence            9999999987642             1124799999999999999999864211                          


Q ss_pred             -cccccchh-----------------------------------------------h---hhHHHHHHHcCCCCCCCCCC
Q psy17126        157 -NLLFPKHK-----------------------------------------------R---QLVVSLLERACVKPILRPYQ  185 (240)
Q Consensus       157 -~~~~~~~~-----------------------------------------------~---~~~~~~l~~~gi~~~~R~e~  185 (240)
                       ++|.+..+                                               |   .-..+++..+|++|+.|||+
T Consensus       147 ~~~~~~~~~~~v~~~~F~P~p~v~s~vv~~~~~~~~~~~~~~~~~~~~v~~~F~~rrk~l~~~~~~~~~~~~~~~~r~e~  226 (244)
T 1qam_A          147 MAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNN  226 (244)
T ss_dssp             TTTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHHHHHHHHHHHTCSCTTS
T ss_pred             hhhEeEEEEEEEChhhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhccccccchHHHHHHCCCCCCCCcee
Confidence             11111111                                               1   01223578889999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy17126        186 LSVQEFGQICLAYRD  200 (240)
Q Consensus       186 ls~~~f~~L~~~l~~  200 (240)
                      ||++||.+|++.+..
T Consensus       227 l~~~~~~~l~~~~~~  241 (244)
T 1qam_A          227 ISFEQFLSLFNSYKL  241 (244)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998855

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.96  E-value=5.4e-29  Score=216.73  Aligned_cols=158  Identities=25%  Similarity=0.369  Sum_probs=127.9

Q ss_pred             ccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCe--EEEEeCCcchHHHHHHHHhcCCCCeEEEEccc
Q psy17126         31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR--LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDV  108 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~--V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~  108 (240)
                      ||||+|+.++++|++.+++.++++|||||||+|.+|. +. ++ .+  |+|||+|++|++.++++.... ++++++++|+
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~   76 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDA   76 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccC-CceEEEECch
Confidence            8999999999999999999999999999999999999 65 44 56  999999999999999865432 5899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------------------------------
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------------------------------  156 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------------------------------  156 (240)
                      +++++++.++      |.  +.++.||||+||+|++|++++|++....                                
T Consensus        77 ~~~~~~~~~~------~~--~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~a~pG~k~yg~lsv~~  148 (252)
T 1qyr_A           77 MTFNFGELAE------KM--GQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMA  148 (252)
T ss_dssp             GGCCHHHHHH------HH--TSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHH
T ss_pred             hhCCHHHhhc------cc--CCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhcCCCCCccccHHHHHH
Confidence            9998776532      11  1358999999999999999999975321                                


Q ss_pred             -cccccchh----------------------------------------------------h-h----hHHHHHHHcCCC
Q psy17126        157 -NLLFPKHK----------------------------------------------------R-Q----LVVSLLERACVK  178 (240)
Q Consensus       157 -~~~~~~~~----------------------------------------------------~-~----~~~~~l~~~gi~  178 (240)
                       ++|+++.+                                                    + .    ...+.+..+||+
T Consensus       149 q~~~~~~~~~~v~~~~F~P~PkV~Savv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n~l~~~~~~~~l~~~~i~  228 (252)
T 1qyr_A          149 QYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGID  228 (252)
T ss_dssp             HHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCHHHHHHTTCC
T ss_pred             HHHheEEEEEEEChHHccCCCCceEEEEEEEEcCcCCCCccCHHHHHHHHHHHHHhCCcHHHHHHhhhhhHHHHHHcCCC
Confidence             22332221                                                    0 0    114568899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH
Q psy17126        179 PILRPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       179 ~~~R~e~ls~~~f~~L~~~l~~  200 (240)
                      |+.|||+||++||.+|++.+.+
T Consensus       229 ~~~R~e~Ls~~~f~~l~~~~~~  250 (252)
T 1qyr_A          229 PAMRAENISVAQYCQMANYLAE  250 (252)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CCCChHHCCHHHHHHHHHHHHh
Confidence            9999999999999999998754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.94  E-value=1.9e-26  Score=203.49  Aligned_cols=112  Identities=28%  Similarity=0.485  Sum_probs=96.9

Q ss_pred             hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEE
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHF  103 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~v  103 (240)
                      +|+|||||++|+.++++|++.+.+.++++|||||||+|.+|..+++.+ .+|+|||+|+.|++.++++....+  +++++
T Consensus         3 ~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~   81 (285)
T 1zq9_A            3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQV   81 (285)
T ss_dssp             -----CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence            689999999999999999999999899999999999999999999985 699999999999999998765432  57999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      +++|+.+++++               .+|.|++|+||++++|++++++++
T Consensus        82 ~~~D~~~~~~~---------------~fD~vv~nlpy~~~~~~~~~~l~~  116 (285)
T 1zq9_A           82 LVGDVLKTDLP---------------FFDTCVANLPYQISSPFVFKLLLH  116 (285)
T ss_dssp             EESCTTTSCCC---------------CCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             EEcceecccch---------------hhcEEEEecCcccchHHHHHHHhc
Confidence            99999987643               368999999999999999999875

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=99.93  E-value=1.7e-26  Score=209.85  Aligned_cols=153  Identities=18%  Similarity=0.235  Sum_probs=118.3

Q ss_pred             chhhhccCccccCCHHHHHHHHHHcCCCC------CCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         23 LRALKQLSQNFLFEPRLTDKIVRNAGTIT------GNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~------~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      .+++|+||||||+|+.++++|++.+++.+      ++.|||||||+|+||..|+++. +.+|++||+|+++++.+++.. 
T Consensus        24 ~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-  102 (353)
T 1i4w_A           24 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-  102 (353)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-
T ss_pred             cCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-
Confidence            35889999999999999999999998764      5899999999999999999863 469999999999999999866 


Q ss_pred             cCCCCeEEEEccccccc-ccccchh-----hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--c------cccc
Q psy17126         96 ASPCPVHFHLGDVMSFT-MQNMFSE-----DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--N------LLFP  161 (240)
Q Consensus        96 ~~~~~v~vi~~D~~~~~-~~~~~~~-----~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--~------~~~~  161 (240)
                      . .++++++++|+++++ +.+++..     ....+|.+.+...+|||||||||+||++++|++....  +      ...+
T Consensus       103 ~-~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~  181 (353)
T 1i4w_A          103 E-GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKML  181 (353)
T ss_dssp             T-TSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEE
T ss_pred             c-CCCEEEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcceEE
Confidence            2 478999999998876 4433221     0011222112246899999999999999999986431  1      1223


Q ss_pred             chhh-hhHHHHHHHcCC
Q psy17126        162 KHKR-QLVVSLLERACV  177 (240)
Q Consensus       162 ~~~~-~~~~~~l~~~gi  177 (240)
                      -+++ ++++++++..|-
T Consensus       182 lmvQkEvA~Rl~A~PGs  198 (353)
T 1i4w_A          182 LWMPSTTARKLLARPGM  198 (353)
T ss_dssp             EEEEHHHHHHHHCCTTS
T ss_pred             EEeEHHHHHHhcCCCCC
Confidence            4445 999999987763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.93  E-value=1.9e-25  Score=198.42  Aligned_cols=117  Identities=24%  Similarity=0.319  Sum_probs=91.5

Q ss_pred             hCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-C
Q psy17126         21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-C   99 (240)
Q Consensus        21 ~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~   99 (240)
                      ++-.++|+|||||++++.+++.|++.+.+.++++|||||||+|.+|..+++++ .+|+|||+|+.|++.++++....+ +
T Consensus        12 ~~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~   90 (299)
T 2h1r_A           12 SGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYN   90 (299)
T ss_dssp             -----------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34468899999999999999999999999899999999999999999999984 799999999999999998765433 6


Q ss_pred             CeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        100 PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       100 ~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      +++++++|+.+++++               .+|.|++|+||++++++++++++.
T Consensus        91 ~v~~~~~D~~~~~~~---------------~~D~Vv~n~py~~~~~~~~~ll~~  129 (299)
T 2h1r_A           91 NLEVYEGDAIKTVFP---------------KFDVCTANIPYKISSPLIFKLISH  129 (299)
T ss_dssp             CEEC----CCSSCCC---------------CCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             ceEEEECchhhCCcc---------------cCCEEEEcCCcccccHHHHHHHhc
Confidence            899999999987542               468999999999999999999864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.92  E-value=2.4e-26  Score=197.88  Aligned_cols=166  Identities=18%  Similarity=0.238  Sum_probs=132.9

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEE
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHF  103 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~v  103 (240)
                      +++|+|||||++++.+++.|++.+++.++++|||||||+|.+|..+++++ .+|+|+|+|+.|++.++++.. ..+++++
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~   79 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTL   79 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEE
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEE
Confidence            57899999999999999999999999899999999999999999999985 799999999999998887654 2368999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc---------------------------
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---------------------------  156 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---------------------------  156 (240)
                      +++|+.+++++.            .+++ .||+|+||+++++++.+++.+...                           
T Consensus        80 ~~~D~~~~~~~~------------~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           80 IHQDILQFQFPN------------KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             CCSCCTTTTCCC------------SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             EECChhhcCccc------------CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            999999877532            0245 899999999999999998864211                           


Q ss_pred             cccccchh------------------------------h------hhHHHH--------------HHHcCCCCCCCCCCC
Q psy17126        157 NLLFPKHK------------------------------R------QLVVSL--------------LERACVKPILRPYQL  186 (240)
Q Consensus       157 ~~~~~~~~------------------------------~------~~~~~~--------------l~~~gi~~~~R~e~l  186 (240)
                      .++.+..+                              .      .....+              ++.+|+++..|+|+|
T Consensus       147 ~~~~~~~~~~v~~~~f~P~p~v~s~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~~~r~~~l  226 (245)
T 1yub_A          147 TQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTI  226 (245)
T ss_dssp             TTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSHHHHHHHHTTCSCTTSC
T ss_pred             eheeEEEEEEECchhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhcchhhhchHHHHHHcCCCCCCChhhC
Confidence            11111100                              0      112222              377889999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q psy17126        187 SVQEFGQICLAYRDMCEE  204 (240)
Q Consensus       187 s~~~f~~L~~~l~~~~~~  204 (240)
                      |+++|.+|++.|..-|++
T Consensus       227 ~~~~f~~l~~~~~~~~~~  244 (245)
T 1yub_A          227 TYEQVLSIFNSYLLFNGR  244 (245)
T ss_dssp             CSHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999998776664

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.63  E-value=1.7e-15  Score=125.40  Aligned_cols=104  Identities=20%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      .+++.+|| |.+++.+...++..+.   ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+-+
T Consensus        20 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   98 (207)
T 1wy7_A           20 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   98 (207)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             Ccccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            45678999 8899999888886653   4578899999999999999999885568999999999999999877644337


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ++++++|+.+++                ..+|.|++|+||...+
T Consensus        99 ~~~~~~d~~~~~----------------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKVFIGDVSEFN----------------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEEEESCGGGCC----------------CCCSEEEECCCCSSSS
T ss_pred             EEEEECchHHcC----------------CCCCEEEEcCCCcccc
Confidence            999999998753                2479999999998765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.54  E-value=2.9e-14  Score=116.75  Aligned_cols=109  Identities=18%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             cCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      .+...+.+.+++.+..   .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.+++++...+ ++++++++|+.
T Consensus        24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  103 (189)
T 3p9n_A           24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA  103 (189)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH
T ss_pred             cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH
Confidence            3455666666666532   5788999999999999998888765689999999999999999876544 68999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      ++... . .         .+++|.|++|+||....+.+.+++..
T Consensus       104 ~~~~~-~-~---------~~~fD~i~~~~p~~~~~~~~~~~l~~  136 (189)
T 3p9n_A          104 AVVAA-G-T---------TSPVDLVLADPPYNVDSADVDAILAA  136 (189)
T ss_dssp             HHHHH-C-C---------SSCCSEEEECCCTTSCHHHHHHHHHH
T ss_pred             HHHhh-c-c---------CCCccEEEECCCCCcchhhHHHHHHH
Confidence            75311 1 0         14689999999998865555555443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.49  E-value=1.1e-13  Score=114.14  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=74.5

Q ss_pred             hhhccCccccCCHHHHHHHHHHc---CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCe
Q psy17126         25 ALKQLSQNFLFEPRLTDKIVRNA---GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPV  101 (240)
Q Consensus        25 ~~k~~gQ~fl~d~~i~~~iv~~~---~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v  101 (240)
                      .+..++| |.++..+...++..+   ...++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.++++..    ++
T Consensus        23 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~   97 (200)
T 1ne2_A           23 FKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GV   97 (200)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TS
T ss_pred             cccceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CC
Confidence            4455666 778888888877665   345788999999999999999998754589999999999999998653    79


Q ss_pred             EEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        102 HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       102 ~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +++++|+.+++                +.+|.|++|+||....
T Consensus        98 ~~~~~d~~~~~----------------~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           98 NFMVADVSEIS----------------GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCGGGCC----------------CCEEEEEECCCC----
T ss_pred             EEEECcHHHCC----------------CCeeEEEECCCchhcc
Confidence            99999998753                2579999999997654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=3.1e-13  Score=113.44  Aligned_cols=96  Identities=11%  Similarity=0.032  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      +...+.++-...+.++.+|||+||| +|.++..+++....+|+|+|+|+.+++.+++++...+.+++++++|+..+.  .
T Consensus        41 ~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--~  118 (230)
T 3evz_A           41 TPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK--G  118 (230)
T ss_dssp             CHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSST--T
T ss_pred             CCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhh--h
Confidence            3345555334446788999999999 999999999873479999999999999999987765558999999975432  1


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +.          .+++|.|++|+||....
T Consensus       119 ~~----------~~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          119 VV----------EGTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             TC----------CSCEEEEEECCCCC---
T ss_pred             cc----------cCceeEEEECCCCcCCc
Confidence            10          14689999999996544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.46  E-value=1.2e-13  Score=126.31  Aligned_cols=103  Identities=22%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHh
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      +..+....++..|| |.+++.+++.|++.+...++.+|||+|||+|.++..++++  ...+|+|+|+|+.+++.+     
T Consensus         7 ~~~~~~~~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----   80 (421)
T 2ih2_A            7 LSLPSNSAPRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----   80 (421)
T ss_dssp             ---------------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----
T ss_pred             hhhcChhhcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----
Confidence            44455556788899 7799999999999988666789999999999999999986  236999999999998655     


Q ss_pred             cCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        96 ~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                         .+++++++|+.+....              +++|+||+||||...
T Consensus        81 ---~~~~~~~~D~~~~~~~--------------~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           81 ---PWAEGILADFLLWEPG--------------EAFDLILGNPPYGIV  111 (421)
T ss_dssp             ---TTEEEEESCGGGCCCS--------------SCEEEEEECCCCCCB
T ss_pred             ---CCCcEEeCChhhcCcc--------------CCCCEEEECcCccCc
Confidence               4689999999875321              368999999999643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.46  E-value=2e-13  Score=117.50  Aligned_cols=100  Identities=14%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             CccccCCHHHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEc
Q psy17126         30 SQNFLFEPRLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLG  106 (240)
Q Consensus        30 gQ~fl~d~~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~  106 (240)
                      +..|-+|..++   ...+... ++.+|||+|||+|.++..++.++..+|+|||+++.+++.+++++...+  ++++++++
T Consensus        30 ~~~~~~d~~ll---~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~  106 (259)
T 3lpm_A           30 VFSFSIDAVLL---AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY  106 (259)
T ss_dssp             TBCCCHHHHHH---HHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             CccCcHHHHHH---HHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC
Confidence            44555554443   3445667 789999999999999999999865599999999999999999876543  57999999


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      |+.++...  +.         .+++|.|++|+||...
T Consensus       107 D~~~~~~~--~~---------~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          107 DLKKITDL--IP---------KERADIVTCNPPYFAT  132 (259)
T ss_dssp             CGGGGGGT--SC---------TTCEEEEEECCCC---
T ss_pred             cHHHhhhh--hc---------cCCccEEEECCCCCCC
Confidence            99876421  11         1478999999999654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.43  E-value=3.9e-13  Score=122.32  Aligned_cols=97  Identities=22%  Similarity=0.253  Sum_probs=82.1

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      ..+.+.++..++..+ +.++.+|||+|||+|.++..++..+. ++|+|+|+|+.|++.+++++...+  ++++++++|+.
T Consensus       200 a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          200 AHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             TCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            455888999999988 88899999999999999999999853 389999999999999999876654  58999999999


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +++++.             +.+|.||+|+||...
T Consensus       279 ~~~~~~-------------~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          279 QLSQYV-------------DSVDFAISNLPYGLK  299 (373)
T ss_dssp             GGGGTC-------------SCEEEEEEECCCC--
T ss_pred             hCCccc-------------CCcCEEEECCCCCcc
Confidence            876432             368999999999864

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.43  E-value=1.9e-12  Score=104.46  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=83.2

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CC--eEEEEccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CP--VHFHLGDVMSFTMQ  114 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~--v~vi~~D~~~~~~~  114 (240)
                      ...+.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.++++....+ .+  ++++++|+.+.. .
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~  116 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-K  116 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-T
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc-c
Confidence            67888999998888999999999999999999998 5799999999999999998876543 44  999999997732 1


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      .             +++|.|++|+||......+..++...
T Consensus       117 ~-------------~~~D~v~~~~~~~~~~~~~~~~l~~~  143 (194)
T 1dus_A          117 D-------------RKYNKIITNPPIRAGKEVLHRIIEEG  143 (194)
T ss_dssp             T-------------SCEEEEEECCCSTTCHHHHHHHHHHH
T ss_pred             c-------------CCceEEEECCCcccchhHHHHHHHHH
Confidence            1             36899999999987555555555543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.43  E-value=6.9e-13  Score=119.41  Aligned_cols=99  Identities=19%  Similarity=0.125  Sum_probs=84.4

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV  108 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~  108 (240)
                      ...+.+.++..++..+++.++.+|||+|||+|.++..++...  ..+|+|+|+|+.|++.+++++...+ .+++++++|+
T Consensus       184 ~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~  263 (354)
T 3tma_A          184 RGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA  263 (354)
T ss_dssp             SCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG
T ss_pred             CCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh
Confidence            467788999999999999999999999999999999999874  2799999999999999999887654 4799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .+++...             ..+|.||+|+||...
T Consensus       264 ~~~~~~~-------------~~~D~Ii~npPyg~r  285 (354)
T 3tma_A          264 RHLPRFF-------------PEVDRILANPPHGLR  285 (354)
T ss_dssp             GGGGGTC-------------CCCSEEEECCCSCC-
T ss_pred             hhCcccc-------------CCCCEEEECCCCcCc
Confidence            9875432             246999999999763

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.42  E-value=4.1e-13  Score=118.00  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=78.3

Q ss_pred             ccCccccCCH----------HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         28 QLSQNFLFEP----------RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        28 ~~gQ~fl~d~----------~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      .||..|.+++          .+++.+++.+...++.+|||+|||+|.++..++.....+|+|+|+|+.+++.+++++...
T Consensus        90 f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~  169 (284)
T 1nv8_A           90 FMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ECCeEEEeCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            4566665554          355666666544467899999999999999999883369999999999999999987665


Q ss_pred             C--CCeEEEEcccccccccccchhhhcccccCCCCc---eEEEecCCCCCCH
Q psy17126         98 P--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG---IRIIGNLPFNVST  144 (240)
Q Consensus        98 ~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~VvsNlPY~Iss  144 (240)
                      +  ++++++++|+.+. ++              +++   |.||+|+||.-..
T Consensus       170 ~l~~~v~~~~~D~~~~-~~--------------~~f~~~D~IvsnPPyi~~~  206 (284)
T 1nv8_A          170 GVSDRFFVRKGEFLEP-FK--------------EKFASIEMILSNPPYVKSS  206 (284)
T ss_dssp             TCTTSEEEEESSTTGG-GG--------------GGTTTCCEEEECCCCBCGG
T ss_pred             CCCCceEEEECcchhh-cc--------------cccCCCCEEEEcCCCCCcc
Confidence            4  4599999999873 21              135   9999999996543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.42  E-value=4.2e-13  Score=108.20  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         37 PRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        37 ~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      ..+.+.+++.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.+++++...+  ++++++++|+.+.. 
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-   94 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-   94 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH-
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH-
Confidence            345667777776 56788999999999999999998854699999999999999999876544  47999999998731 


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      +..           .+.+|+|++|+||.
T Consensus        95 ~~~-----------~~~fD~i~~~~~~~  111 (177)
T 2esr_A           95 DCL-----------TGRFDLVFLDPPYA  111 (177)
T ss_dssp             HHB-----------CSCEEEEEECCSSH
T ss_pred             Hhh-----------cCCCCEEEECCCCC
Confidence            111           13589999999984

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.41  E-value=2.7e-13  Score=112.72  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccccccc
Q psy17126         38 RLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTM  113 (240)
Q Consensus        38 ~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~  113 (240)
                      .+.+.+++.+... ++.+|||+|||+|.++..++.++..+|+|||+|+.|++.+++++...+   ++++++++|+.++..
T Consensus        39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence            3455555555432 678999999999999999887765699999999999999999876554   589999999977421


Q ss_pred             cccchhhhcccccCCCC-ceEEEecCCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLP-GIRIIGNLPFNVS  143 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~-~~~VvsNlPY~Is  143 (240)
                      . + .         .++ +|+|++|+||...
T Consensus       119 ~-~-~---------~~~~fD~I~~~~~~~~~  138 (201)
T 2ift_A          119 Q-P-Q---------NQPHFDVVFLDPPFHFN  138 (201)
T ss_dssp             S-C-C---------SSCCEEEEEECCCSSSC
T ss_pred             h-h-c---------cCCCCCEEEECCCCCCc
Confidence            1 0 0         146 8999999998743

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.41  E-value=1.6e-12  Score=107.50  Aligned_cols=93  Identities=15%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ++..+.++..+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.++++....+ .+++++++|+.+.
T Consensus        59 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  137 (210)
T 3lbf_A           59 TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG  137 (210)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             EeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence            5668899999999999999999999999999999999998 4799999999999999999876544 5799999999875


Q ss_pred             cccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ....             +++|.|+++.+
T Consensus       138 ~~~~-------------~~~D~i~~~~~  152 (210)
T 3lbf_A          138 WQAR-------------APFDAIIVTAA  152 (210)
T ss_dssp             CGGG-------------CCEEEEEESSB
T ss_pred             CccC-------------CCccEEEEccc
Confidence            3321             46899888654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=3.7e-12  Score=102.01  Aligned_cols=92  Identities=12%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ....+.+...+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.++++....+ .+++++++|+.+ 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-   94 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-   94 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence            4567888899999998888999999999999999999984 5799999999999999999876554 579999999987 


Q ss_pred             cccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .+++             +.+|.|+++.|
T Consensus        95 ~~~~-------------~~~D~i~~~~~  109 (183)
T 2yxd_A           95 VLDK-------------LEFNKAFIGGT  109 (183)
T ss_dssp             HGGG-------------CCCSEEEECSC
T ss_pred             cccC-------------CCCcEEEECCc
Confidence            3332             36899999988

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.41  E-value=5.8e-13  Score=123.80  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             hhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--------------CCeEEEEeCCcchHHHH
Q psy17126         25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--------------PARLVLIEKDPRFTPCL   90 (240)
Q Consensus        25 ~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--------------~~~V~avEid~~m~~~l   90 (240)
                      .++..|| |.+++.+++.|++.+.+.++.+|+|+|||||.++..+++..              ..+++|+|+++.++..+
T Consensus       146 ~~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          146 KKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             TTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             ccccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            4566888 66999999999999988888999999999999998888641              25899999999999999


Q ss_pred             HHHHhcCC-C--CeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         91 DMLAQASP-C--PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        91 ~~~~~~~~-~--~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +.++...+ .  +++++++|++..+..              .++|+||+||||...
T Consensus       225 ~~nl~l~g~~~~~~~i~~gD~l~~~~~--------------~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          225 SMNLYLHGIGTDRSPIVCEDSLEKEPS--------------TLVDVILANPPFGTR  266 (445)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSCCS--------------SCEEEEEECCCSSCC
T ss_pred             HHHHHHhCCCcCCCCEeeCCCCCCccc--------------CCcCEEEECCCCCCc
Confidence            88764333 2  688999999876432              258999999999864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.40  E-value=4.2e-13  Score=111.60  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc-cc
Q psy17126         37 PRLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF-TM  113 (240)
Q Consensus        37 ~~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~-~~  113 (240)
                      ..+.+.+++.+... ++.+|||+|||+|.++..++.++..+|+|||+|+.|++.+++++...+ .+++++++|+.++ +.
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~  118 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ  118 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh
Confidence            44566666665432 678999999999999999888765699999999999999999876554 5899999999773 21


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .             .+.+|.|++|+||...
T Consensus       119 ~-------------~~~fD~V~~~~p~~~~  135 (202)
T 2fpo_A          119 K-------------GTPHNIVFVDPPFRRG  135 (202)
T ss_dssp             C-------------CCCEEEEEECCSSSTT
T ss_pred             c-------------CCCCCEEEECCCCCCC
Confidence            1             1368999999998743

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.40  E-value=5.1e-13  Score=108.17  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126         36 EPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM  113 (240)
Q Consensus        36 d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~  113 (240)
                      .......+++.+..  .++.+|||+|||+|.++..+++++  +|+|+|+|+.|++.        ..+++++++|+.+ ++
T Consensus         6 P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~   74 (170)
T 3q87_B            6 PGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC-SI   74 (170)
T ss_dssp             CCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT-TB
T ss_pred             cCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh-hc
Confidence            33344445554443  567799999999999999999985  99999999999877        3578999999987 33


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .+             +++|.|++|+||..
T Consensus        75 ~~-------------~~fD~i~~n~~~~~   90 (170)
T 3q87_B           75 NQ-------------ESVDVVVFNPPYVP   90 (170)
T ss_dssp             CG-------------GGCSEEEECCCCBT
T ss_pred             cc-------------CCCCEEEECCCCcc
Confidence            22             25899999999974

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.40  E-value=5.2e-13  Score=107.93  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      .....+++.+++.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.++++....+  ++++++++|+.+
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence            345667888888874 45788999999999999999988755799999999999999998775433  579999999987


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ... .+ .      + ..+++|.|++|+||..
T Consensus       106 ~~~-~~-~------~-~~~~fD~i~~~~~~~~  128 (187)
T 2fhp_A          106 ALE-QF-Y------E-EKLQFDLVLLDPPYAK  128 (187)
T ss_dssp             HHH-HH-H------H-TTCCEEEEEECCCGGG
T ss_pred             HHH-HH-H------h-cCCCCCEEEECCCCCc
Confidence            421 11 0      0 0146899999999863

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.38  E-value=2.2e-12  Score=104.70  Aligned_cols=82  Identities=11%  Similarity=-0.036  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhccccc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .+.++.+|||+|||+|.+|..++++ ..+|+|+|+|+.|++.++++....+ ++++++++|+..++  ...         
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~--~~~---------   86 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD--HYV---------   86 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG--GTC---------
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH--hhc---------
Confidence            4567899999999999999999998 5899999999999999999876443 78999998887643  111         


Q ss_pred             CCCCceEEEecCCCCC
Q psy17126        127 EGLPGIRIIGNLPFNV  142 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~I  142 (240)
                       .+++|.|++|++|-.
T Consensus        87 -~~~fD~v~~~~~~~~  101 (185)
T 3mti_A           87 -REPIRAAIFNLGYLP  101 (185)
T ss_dssp             -CSCEEEEEEEEC---
T ss_pred             -cCCcCEEEEeCCCCC
Confidence             146899999988743

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.38  E-value=2.8e-13  Score=111.41  Aligned_cols=97  Identities=21%  Similarity=0.248  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +++.+++.+.. .++.+|||+|||+|.++..+++..+ .+|+|+|+|+.|++.++++....+.+++++++|+.+ .+...
T Consensus        17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~   95 (215)
T 4dzr_A           17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIER   95 (215)
T ss_dssp             HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhh
Confidence            55666666655 6789999999999999999999853 599999999999999998765433378899999987 33321


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ..        ..+++|.|++|+||....
T Consensus        96 ~~--------~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           96 AE--------RGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             HH--------TTCCBSEEEECCCCCC--
T ss_pred             hh--------ccCcccEEEECCCCCCCc
Confidence            00        014689999999996654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.38  E-value=7.3e-12  Score=103.39  Aligned_cols=94  Identities=10%  Similarity=0.025  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      +...+...+++.+.+.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++....+ ++++++++|+.+..
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  103 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL  103 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence            788888999999999999999999999999999999985 3799999999999999998775443 68999999997542


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      . ..            ..+|.|+++.++.
T Consensus       104 ~-~~------------~~~D~i~~~~~~~  119 (204)
T 3e05_A          104 D-DL------------PDPDRVFIGGSGG  119 (204)
T ss_dssp             T-TS------------CCCSEEEESCCTT
T ss_pred             h-cC------------CCCCEEEECCCCc
Confidence            1 11            3589999998776

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.38  E-value=9.8e-13  Score=113.75  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhc---CC--CCeEEEEccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA---SP--CPVHFHLGDV  108 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~---~~--~~v~vi~~D~  108 (240)
                      +|..++   ...+...++.+|||+|||+|.++..++.+.+ .+|+|||+++.+++.+++++..   .+  ++++++++|+
T Consensus        23 ~D~~lL---~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~   99 (260)
T 2ozv_A           23 MDAMLL---ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV   99 (260)
T ss_dssp             CHHHHH---HHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT
T ss_pred             cHHHHH---HHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH
Confidence            554433   3345666788999999999999999999863 6999999999999999998765   33  4699999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .++.... ..    ..+ ..+++|.|++|+||...
T Consensus       100 ~~~~~~~-~~----~~~-~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          100 TLRAKAR-VE----AGL-PDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCCHHHH-HH----TTC-CTTCEEEEEECCCC---
T ss_pred             HHHhhhh-hh----hcc-CCCCcCEEEECCCCcCC
Confidence            8762100 00    000 01468999999999765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.37  E-value=3.8e-12  Score=118.05  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=81.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      +++.+++.+...++.+|||+|||+|.++..|+.. ..+|+|+|+++.+++.+++++...+ .+++++++|+.+.- ..+ 
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l-~~~-  350 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV-TKQ-  350 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC-SSS-
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh-hhh-
Confidence            5566677777778899999999999999999998 5799999999999999999876544 58999999998731 111 


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                            .|. .+.+|.|++|+||.-...++..+..
T Consensus       351 ------~~~-~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          351 ------PWA-KNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             ------GGG-TTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             ------hhh-cCCCCEEEECCCCccHHHHHHHHHh
Confidence                  011 1368999999999877766655544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.36  E-value=5.1e-12  Score=105.98  Aligned_cols=108  Identities=18%  Similarity=0.099  Sum_probs=85.4

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDV  108 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~  108 (240)
                      .||+ +..+.++..+++.+...++.+|||||||+|.++..++..+ .+|+|+|+++.+++.++++....+ +++++++|+
T Consensus        49 ~~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~  125 (231)
T 1vbf_A           49 PGIN-TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDG  125 (231)
T ss_dssp             TTEE-ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCG
T ss_pred             CCCc-cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCc
Confidence            3564 7789999999999998899999999999999999999986 799999999999999998876544 899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      .+. +..   .         +++|.|+++.++.-...-+.+++.
T Consensus       126 ~~~-~~~---~---------~~fD~v~~~~~~~~~~~~~~~~L~  156 (231)
T 1vbf_A          126 TLG-YEE---E---------KPYDRVVVWATAPTLLCKPYEQLK  156 (231)
T ss_dssp             GGC-CGG---G---------CCEEEEEESSBBSSCCHHHHHTEE
T ss_pred             ccc-ccc---C---------CCccEEEECCcHHHHHHHHHHHcC
Confidence            872 211   1         368999988775433333444443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.36  E-value=1.1e-11  Score=103.37  Aligned_cols=95  Identities=9%  Similarity=0.027  Sum_probs=78.7

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-C-CeEEEEcccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-C-PVHFHLGDVM  109 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~-~v~vi~~D~~  109 (240)
                      ..++.+.+...+++.+.+.++.+|||||||+|.++..+++. ..+|+|+|+++.|++.++++++..+ . +++++++|+.
T Consensus        36 ~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  114 (204)
T 3njr_A           36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP  114 (204)
T ss_dssp             SCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence            35677888888999999999999999999999999999998 5799999999999999999876554 3 8999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.- ...            ..+|.|+++...
T Consensus       115 ~~~-~~~------------~~~D~v~~~~~~  132 (204)
T 3njr_A          115 AAL-ADL------------PLPEAVFIGGGG  132 (204)
T ss_dssp             GGG-TTS------------CCCSEEEECSCC
T ss_pred             hhc-ccC------------CCCCEEEECCcc
Confidence            731 111            357899988643

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.36  E-value=6.7e-12  Score=108.98  Aligned_cols=91  Identities=16%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ++++.+|||||||||.+|..|+++.   ..+|+|||+|+.|++.+++++...+  .+++++++|+.+++++         
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~---------  138 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE---------  138 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC---------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc---------
Confidence            5689999999999999999999863   2489999999999999999876543  6899999999987653         


Q ss_pred             cccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        124 DWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                            .+|.|++|.-. ++..+....++...
T Consensus       139 ------~~d~v~~~~~l~~~~~~~~~~~l~~i  164 (261)
T 4gek_A          139 ------NASMVVLNFTLQFLEPSERQALLDKI  164 (261)
T ss_dssp             ------SEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             ------ccccceeeeeeeecCchhHhHHHHHH
Confidence                  36888887653 35555444455443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.35  E-value=1.2e-12  Score=110.63  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         36 EPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        36 d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      ...+...++..+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.+++++...+  ++++++++|+.++.
T Consensus        62 ~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           62 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG
T ss_pred             HHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc
Confidence            3445566655542 2368899999999999999999985 799999999999999999876654  48999999998864


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ..              ..+|+|++|+||...
T Consensus       141 ~~--------------~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A          141 SF--------------LKADVVFLSPPWGGP  157 (241)
T ss_dssp             GG--------------CCCSEEEECCCCSSG
T ss_pred             cc--------------CCCCEEEECCCcCCc
Confidence            11              368999999999753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.35  E-value=1.7e-12  Score=119.88  Aligned_cols=97  Identities=11%  Similarity=0.050  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh-------c--C-CCCeEE
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ-------A--S-PCPVHF  103 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~-------~--~-~~~v~v  103 (240)
                      +.+..+..+++.+.+.++++|||||||+|.++..++... +.+|+|||+++.|++.++++.+       .  . .+++++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            356788999999999999999999999999999999764 3469999999999999887432       1  1 268999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +++|+.++++.+.+           ..+|+|++|.+|..
T Consensus       237 i~GD~~~lp~~d~~-----------~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          237 ERGDFLSEEWRERI-----------ANTSVIFVNNFAFG  264 (438)
T ss_dssp             EECCTTSHHHHHHH-----------HTCSEEEECCTTCC
T ss_pred             EECcccCCcccccc-----------CCccEEEEcccccC
Confidence            99999998765422           14799999988753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.35  E-value=3e-12  Score=104.92  Aligned_cols=83  Identities=12%  Similarity=0.045  Sum_probs=68.0

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhh
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      ...+.++.+|||+|||+|.++..+++..  .++|+|+|+++.+++.+++++...+  ++++++++|+.+++-  ..    
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~----   90 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--YI----   90 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--TC----
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--hc----
Confidence            3456788999999999999999999872  3699999999999999999876543  579999999977541  11    


Q ss_pred             cccccCCCCceEEEecCCC
Q psy17126        122 RRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY  140 (240)
                            .+++|.|++|+||
T Consensus        91 ------~~~fD~v~~~~~~  103 (197)
T 3eey_A           91 ------DCPVKAVMFNLGY  103 (197)
T ss_dssp             ------CSCEEEEEEEESB
T ss_pred             ------cCCceEEEEcCCc
Confidence                  1368999999998

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.34  E-value=7.8e-12  Score=106.73  Aligned_cols=87  Identities=13%  Similarity=0.016  Sum_probs=64.4

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      ++.+|||+|||+|.++..++.+. ..+|+|+|+|+.|++.+++++...+  ++++++++|+.+.-+..+ ..      ..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~------~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL-KE------ES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS-TT------CC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhh-hc------cc
Confidence            46799999999999999998763 3699999999999999999876543  469999999876211111 10      00


Q ss_pred             CCCceEEEecCCCCCCH
Q psy17126        128 GLPGIRIIGNLPFNVST  144 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss  144 (240)
                      ..++|.|++|+||....
T Consensus       138 ~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          138 EIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             SCCBSEEEECCCCC---
T ss_pred             CCcccEEEECCCCccCc
Confidence            13689999999997544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.34  E-value=4.3e-12  Score=116.55  Aligned_cols=98  Identities=12%  Similarity=0.051  Sum_probs=82.8

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--------------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--------------------------------------   74 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--------------------------------------   74 (240)
                      ..+.+.++..|+..+++.++..|||++||+|.++..++....                                      
T Consensus       183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            456788999999999999999999999999999998887532                                      


Q ss_pred             -CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         75 -ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        75 -~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                       .+|+|+|+|+.|++.+++++...+  ++++++++|+.+++.+              ..+|+||+||||....
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~--------------~~fD~Iv~NPPYg~rl  321 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE--------------DEYGVVVANPPYGERL  321 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC--------------CCSCEEEECCCCCCSH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC--------------CCCCEEEECCCCcccc
Confidence             359999999999999999887654  5699999999986542              2579999999997643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.34  E-value=1.5e-11  Score=105.65  Aligned_cols=96  Identities=15%  Similarity=0.061  Sum_probs=78.9

Q ss_pred             ccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .......+..+++.+. +.++.+|||||||+|.++..+++.+..+|+|+|+++.+++.++++....+  ++++++++|+.
T Consensus        27 ~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  106 (267)
T 3kkz_A           27 GPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD  106 (267)
T ss_dssp             SSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence            3446677777887776 67889999999999999999999854699999999999999998776543  67999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      +++++.             +++|+|+++.++.
T Consensus       107 ~~~~~~-------------~~fD~i~~~~~~~  125 (267)
T 3kkz_A          107 DLPFRN-------------EELDLIWSEGAIY  125 (267)
T ss_dssp             SCCCCT-------------TCEEEEEESSCGG
T ss_pred             hCCCCC-------------CCEEEEEEcCCce
Confidence            876432             4689999988743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.34  E-value=3.5e-12  Score=106.07  Aligned_cols=101  Identities=9%  Similarity=0.036  Sum_probs=75.2

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeEEEEc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVHFHLG  106 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~vi~~  106 (240)
                      +.++++.+.+.++.+|||+|||+|.++..|++++ .+|+|||+|+.|++.++++...             ...+++++++
T Consensus        11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            3344566677788999999999999999999985 6999999999999999886532             1357999999


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHh
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQA  153 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~  153 (240)
                      |+.++++.+.            ++||.|+++..+ .+..+...+++..
T Consensus        90 d~~~l~~~~~------------~~fD~v~~~~~l~~l~~~~~~~~l~~  125 (203)
T 1pjz_A           90 DFFALTARDI------------GHCAAFYDRAAMIALPADMRERYVQH  125 (203)
T ss_dssp             CCSSSTHHHH------------HSEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             ccccCCcccC------------CCEEEEEECcchhhCCHHHHHHHHHH
Confidence            9998875321            257999987554 3444444344443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.34  E-value=2.5e-12  Score=115.44  Aligned_cols=101  Identities=10%  Similarity=0.041  Sum_probs=77.3

Q ss_pred             hhccCccccCCHHHHHHHHHHc----CCCCCCEEEEECCchhHHHHHHHhhCC------CeEEEEeCCcchHHHHHHHHh
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNA----GTITGNEVCEVGPGPGSITRSILNRRP------ARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~----~~~~~~~VLEIG~GtG~lt~~La~~~~------~~V~avEid~~m~~~l~~~~~   95 (240)
                      .+.+|++| ++..++..|...+    ...++.+|||+|||+|.++..+++...      .+|+|+|+++.+++.++.++.
T Consensus       102 ~~~~g~~~-TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~  180 (344)
T 2f8l_A          102 GIQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD  180 (344)
T ss_dssp             SCCGGGCC-CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH
T ss_pred             ccccCcCC-ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH
Confidence            35678854 7777765544333    445678999999999999999987642      589999999999999998765


Q ss_pred             cCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        96 ~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ..+.+++++++|++....              ..++|+||+||||.
T Consensus       181 ~~g~~~~i~~~D~l~~~~--------------~~~fD~Ii~NPPfg  212 (344)
T 2f8l_A          181 LQRQKMTLLHQDGLANLL--------------VDPVDVVISDLPVG  212 (344)
T ss_dssp             HHTCCCEEEESCTTSCCC--------------CCCEEEEEEECCCS
T ss_pred             hCCCCceEEECCCCCccc--------------cCCccEEEECCCCC
Confidence            433468999999977321              13689999999974

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.33  E-value=9.4e-12  Score=105.64  Aligned_cols=92  Identities=16%  Similarity=0.097  Sum_probs=77.3

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      ...+..+..+++.+.+.++.+|||||||+|.++..+++....+|+|+|+++.|++.++++....+  ++++++++|+.++
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            35678889999999988999999999999999999998754699999999999999998776543  5899999999887


Q ss_pred             cccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ++ +             +.+|+|+++-.
T Consensus        99 ~~-~-------------~~fD~V~~~~~  112 (256)
T 1nkv_A           99 VA-N-------------EKCDVAACVGA  112 (256)
T ss_dssp             CC-S-------------SCEEEEEEESC
T ss_pred             Cc-C-------------CCCCEEEECCC
Confidence            54 1             35788887544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.33  E-value=4.4e-12  Score=110.52  Aligned_cols=107  Identities=15%  Similarity=0.060  Sum_probs=84.4

Q ss_pred             hCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-
Q psy17126         21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-   98 (240)
Q Consensus        21 ~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-   98 (240)
                      .|++.+...++.|+.++.....+.....+.++++|||+|||+|.++..+++.. ..+|+|+|+++.+++.++++++..+ 
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l  168 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL  168 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            45555666666666776555555545556788999999999999999999984 3599999999999999999877654 


Q ss_pred             CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      .+++++++|+.+++.    .          ..+|.|+.|+|+.
T Consensus       169 ~~~~~~~~d~~~~~~----~----------~~~D~Vi~d~p~~  197 (272)
T 3a27_A          169 NNVIPILADNRDVEL----K----------DVADRVIMGYVHK  197 (272)
T ss_dssp             SSEEEEESCGGGCCC----T----------TCEEEEEECCCSS
T ss_pred             CCEEEEECChHHcCc----c----------CCceEEEECCccc
Confidence            579999999988621    1          3689999999983

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.33  E-value=5.4e-12  Score=115.61  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=81.9

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--------------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--------------------------------------   74 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--------------------------------------   74 (240)
                      ..+.+.++..|+..+++.++..|+|++||+|++...++....                                      
T Consensus       176 Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          176 APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            456788999999999999999999999999999998886532                                      


Q ss_pred             -CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         75 -ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        75 -~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                       .+|+|+|+|+.|++.+++|+...+  ++++++++|+.+++.+              ..+|+||+||||...
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~--------------~~fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN--------------KINGVLISNPPYGER  313 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC--------------CCSCEEEECCCCTTT
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc--------------CCcCEEEECCchhhc
Confidence             359999999999999999887654  5699999999987542              257999999999753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.32  E-value=6.2e-12  Score=109.13  Aligned_cols=90  Identities=17%  Similarity=0.246  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      +++.+++.+. .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+ .+++++++|+.+. ++  
T Consensus        98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~--  173 (276)
T 2b3t_A           98 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LA--  173 (276)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GT--
T ss_pred             HHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cc--
Confidence            5666777665 567899999999999999999763 3699999999999999999876544 4799999999763 11  


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                        .         +++|.|++|+||.-.
T Consensus       174 --~---------~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          174 --G---------QQFAMIVSNPPYIDE  189 (276)
T ss_dssp             --T---------CCEEEEEECCCCBCT
T ss_pred             --c---------CCccEEEECCCCCCc
Confidence              1         368999999999654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.32  E-value=3.1e-12  Score=122.00  Aligned_cols=114  Identities=13%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcC----CCCCCEEEEECCchhHHHHHHHhhC----CCeEEEEeCCcchHHH
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAG----TITGNEVCEVGPGPGSITRSILNRR----PARLVLIEKDPRFTPC   89 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~----~~~~~~VLEIG~GtG~lt~~La~~~----~~~V~avEid~~m~~~   89 (240)
                      ++.+.-..+++.|| |.+++.+++.|++.+.    ..++.+|+|.+||||.+...+++..    ...++|+|+++.++..
T Consensus       185 l~~~a~~~~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~l  263 (542)
T 3lkd_A          185 IGQFATDSGKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNL  263 (542)
T ss_dssp             HHHHHCC---CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHH
T ss_pred             HHHHHHHhcccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHH
Confidence            33343345677899 7899999999999887    4578899999999999998888762    3689999999999999


Q ss_pred             HHHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         90 LDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        90 l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++.++...+   +++.++++|.+..+++..          ...++|+||+||||..
T Consensus       264 A~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~----------~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          264 ARMNMILHGVPIENQFLHNADTLDEDWPTQ----------EPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             HHHHHHHTTCCGGGEEEEESCTTTSCSCCS----------SCCCBSEEEECCCTTC
T ss_pred             HHHHHHHcCCCcCccceEecceeccccccc----------ccccccEEEecCCcCC
Confidence            988754332   468899999988754321          1147899999999964

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.32  E-value=3.3e-12  Score=101.60  Aligned_cols=98  Identities=15%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             cCCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      .....+.+.+++.+..  .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....+.+++++++|+.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  100 (171)
T 1ws6_A           22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF  100 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred             CCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH
Confidence            3455677777776653  267899999999999999999986 4699999999999999987754333799999999873


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      . +.. ..       ...++|.|++|+||.
T Consensus       101 ~-~~~-~~-------~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          101 L-PEA-KA-------QGERFTVAFMAPPYA  121 (171)
T ss_dssp             H-HHH-HH-------TTCCEEEEEECCCTT
T ss_pred             H-Hhh-hc-------cCCceEEEEECCCCc
Confidence            1 111 00       013689999999995

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.32  E-value=8.3e-12  Score=106.12  Aligned_cols=113  Identities=15%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             ccCccccCC--HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEE
Q psy17126         28 QLSQNFLFE--PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL  105 (240)
Q Consensus        28 ~~gQ~fl~d--~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~  105 (240)
                      .+|..++..  ...+..+++.+.+.++.+|||||||+|.++..+++....+|+|+|+++.|++.++++.... +++++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~  108 (266)
T 3ujc_A           30 IFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEA  108 (266)
T ss_dssp             HHCTTCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEE
T ss_pred             HhCCCccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEE
Confidence            355555444  4567888888888899999999999999999999973469999999999999999865443 7899999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhc
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAI  154 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~  154 (240)
                      +|+.++++++             +++|+|+++-. ++++.+....++...
T Consensus       109 ~d~~~~~~~~-------------~~fD~v~~~~~l~~~~~~~~~~~l~~~  145 (266)
T 3ujc_A          109 NDILTKEFPE-------------NNFDLIYSRDAILALSLENKNKLFQKC  145 (266)
T ss_dssp             CCTTTCCCCT-------------TCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             CccccCCCCC-------------CcEEEEeHHHHHHhcChHHHHHHHHHH
Confidence            9999876532             46899998865 445434445555543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.32  E-value=2.2e-11  Score=103.40  Aligned_cols=94  Identities=18%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHc-CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         35 FEPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        35 ~d~~i~~~iv~~~-~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      ..+..+..+++.+ .+.++.+|||||||+|.++..+++.++.+|+|+|+++.+++.++++....+  ++++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  108 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL  108 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            3466777777776 567788999999999999999999865699999999999999998876543  5699999999887


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ++++             +++|.|+++....
T Consensus       109 ~~~~-------------~~fD~v~~~~~l~  125 (257)
T 3f4k_A          109 PFQN-------------EELDLIWSEGAIY  125 (257)
T ss_dssp             SSCT-------------TCEEEEEEESCSC
T ss_pred             CCCC-------------CCEEEEEecChHh
Confidence            6432             4689999887643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.31  E-value=3.5e-12  Score=116.77  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=81.0

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--------------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--------------------------------------   74 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--------------------------------------   74 (240)
                      ..+.+.++..|+..+++.++..|||+|||+|.++..++..+.                                      
T Consensus       177 Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          177 APIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             CCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            345678999999999999999999999999999999887631                                      


Q ss_pred             -CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         75 -ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        75 -~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                       .+|+|+|+|+.|++.+++++...+  ++++++++|+.++..+              .++|+||+||||...
T Consensus       257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~--------------~~~D~Iv~NPPyg~r  314 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE--------------DEFGFIITNPPYGER  314 (385)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS--------------CBSCEEEECCCCCCS
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC--------------CCCcEEEECCCCcCc
Confidence             369999999999999999876543  4799999999986532              257999999999753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.31  E-value=3.9e-12  Score=110.89  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +..+..+++.+.+.++.+|||||||+|.++..|++++ .+|+|||+|+.|++.++++....     ++++|+.+++....
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~  104 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIP  104 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccccc
Confidence            5678889999999999999999999999999999985 79999999999999999876432     45666666554100


Q ss_pred             chhhhcccccCCCCceEEEecCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      .        ...+++|.|++|..++
T Consensus       105 ~--------~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A          105 K--------ELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             G--------GGTTCCSEEEEESCGG
T ss_pred             c--------ccCCCccEEEEhhhhH
Confidence            0        0014689999987653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.30  E-value=2e-11  Score=104.72  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=75.6

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~  115 (240)
                      .+++.+++.+++.++.+|||||||+|.++..+++....+|+|+|+++.+++.++++....+  ++++++++|+.++++++
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            4667788888888999999999999999999998655799999999999999998765433  57999999999876532


Q ss_pred             cchhhhcccccCCCCceEEEecCCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                                   +++|+|+++-.+.
T Consensus       128 -------------~~fD~v~~~~~l~  140 (273)
T 3bus_A          128 -------------ASFDAVWALESLH  140 (273)
T ss_dssp             -------------TCEEEEEEESCTT
T ss_pred             -------------CCccEEEEechhh
Confidence                         3689998876643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.30  E-value=1.2e-11  Score=105.73  Aligned_cols=87  Identities=13%  Similarity=0.147  Sum_probs=72.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      -+..+++.+...++.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++....+ ++++++++|+.++++++  
T Consensus        25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~--  101 (260)
T 1vl5_A           25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD--  101 (260)
T ss_dssp             CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT--
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC--
Confidence            45667888888889999999999999999999986 599999999999999998765544 67999999999876543  


Q ss_pred             hhhhcccccCCCCceEEEecCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                 +.+|+|+++..
T Consensus       102 -----------~~fD~V~~~~~  112 (260)
T 1vl5_A          102 -----------ERFHIVTCRIA  112 (260)
T ss_dssp             -----------TCEEEEEEESC
T ss_pred             -----------CCEEEEEEhhh
Confidence                       36899998855

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.30  E-value=2.2e-11  Score=101.22  Aligned_cols=106  Identities=8%  Similarity=-0.013  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC------CCeEEEEcccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP------CPVHFHLGDVM  109 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~------~~v~vi~~D~~  109 (240)
                      +...+.+++.+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.+++++...+      .+++++++|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            34556666666666788999999999999999998753 699999999999999998765432      27999999986


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      ..+...             +++|.|+++-. .+++.+.+.+++....
T Consensus        95 ~~~~~~-------------~~fD~v~~~~~l~~~~~~~~~~~l~~~~  128 (217)
T 3jwh_A           95 YQDKRF-------------HGYDAATVIEVIEHLDLSRLGAFERVLF  128 (217)
T ss_dssp             SCCGGG-------------CSCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred             cccccC-------------CCcCEEeeHHHHHcCCHHHHHHHHHHHH
Confidence            654321             36788888766 4567666666666554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.29  E-value=9.6e-12  Score=113.48  Aligned_cols=89  Identities=16%  Similarity=0.297  Sum_probs=71.7

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~  114 (240)
                      .+.+++.+...++.+|||+|||+|.++..+++.+ ..+|+|||+|+.|++.+++++...+    .+++++.+|+.+. ++
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~  289 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  289 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CC
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CC
Confidence            4456777777777999999999999999999985 4799999999999999999876533    2588899999872 22


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .             +++|.|++|+||..
T Consensus       290 ~-------------~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          290 P-------------FRFNAVLCNPPFHQ  304 (375)
T ss_dssp             T-------------TCEEEEEECCCC--
T ss_pred             C-------------CCeeEEEECCCccc
Confidence            1             46899999999973

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.29  E-value=4.3e-11  Score=96.32  Aligned_cols=95  Identities=17%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      .....+...+++.+...++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++....+  .+++++++|+.+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-   93 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-   93 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-
Confidence            5677888889998888899999999999999999999986 799999999999999998775543  589999999876 


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .++..            +.+|.|+++.++.-
T Consensus        94 ~~~~~------------~~~D~v~~~~~~~~  112 (192)
T 1l3i_A           94 ALCKI------------PDIDIAVVGGSGGE  112 (192)
T ss_dssp             HHTTS------------CCEEEEEESCCTTC
T ss_pred             hcccC------------CCCCEEEECCchHH
Confidence            22221            25899999988643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.29  E-value=4.9e-12  Score=120.62  Aligned_cols=106  Identities=13%  Similarity=0.044  Sum_probs=80.5

Q ss_pred             hhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-------------------CCeEEEEeCCcc
Q psy17126         25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-------------------PARLVLIEKDPR   85 (240)
Q Consensus        25 ~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-------------------~~~V~avEid~~   85 (240)
                      .++..|| |.+++.+++.|++.+.+.++.+|+|.|||||.+...+++..                   ...++|+|+++.
T Consensus       144 ~~~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          144 TKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             ------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             ccccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            3566888 67999999999999988889999999999999998887641                   137999999999


Q ss_pred             hHHHHHHHHhcCC-CC-----eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         86 FTPCLDMLAQASP-CP-----VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        86 m~~~l~~~~~~~~-~~-----v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ++..++.++...+ .+     +.++++|.+..+...            ..++|+||+||||...
T Consensus       223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~------------~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          223 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN------------LPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT------------SCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHHHhCCCccccccCCeEeCCCccccccc------------ccCCeEEEECCCcccc
Confidence            9999988764333 33     789999987643211            1468999999999865

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.29  E-value=3.1e-11  Score=102.33  Aligned_cols=102  Identities=13%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+..++......++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.++++....+.+++++++|+.+++++   
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---  103 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK---  103 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC---
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC---
Confidence            345566666665678899999999999999999985 6999999999999999988765556799999999886542   


Q ss_pred             hhhhcccccCCCCceEEEec--CCCCCCHHHHHHHHHhc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGN--LPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsN--lPY~Iss~il~~ll~~~  154 (240)
                                 +++|.|+++  ...+.+.+...+++...
T Consensus       104 -----------~~fD~v~~~~~~~~~~~~~~~~~~l~~~  131 (252)
T 1wzn_A          104 -----------NEFDAVTMFFSTIMYFDEEDLRKLFSKV  131 (252)
T ss_dssp             -----------SCEEEEEECSSGGGGSCHHHHHHHHHHH
T ss_pred             -----------CCccEEEEcCCchhcCCHHHHHHHHHHH
Confidence                       257888853  22334444455555543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.29  E-value=1.2e-11  Score=101.88  Aligned_cols=90  Identities=13%  Similarity=0.264  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~  114 (240)
                      +.+++.+++.+...++ +|||||||+|.++..+++....+|+|+|+++.+++.++++....+  ++++++++|+.+++++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            5678888888887766 999999999999999999843699999999999999998866543  5899999999987644


Q ss_pred             ccchhhhcccccCCCCceEEEecCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +             +.+|.|+++..+
T Consensus       109 ~-------------~~~D~v~~~~~l  121 (219)
T 3dlc_A          109 D-------------NYADLIVSRGSV  121 (219)
T ss_dssp             T-------------TCEEEEEEESCG
T ss_pred             c-------------ccccEEEECchH
Confidence            2             468999998763

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.29  E-value=5.4e-12  Score=110.96  Aligned_cols=86  Identities=19%  Similarity=0.100  Sum_probs=71.6

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .++++.+  .+|.+|||+|||+|.++..+++++..+|+|+|+++.+++.+++|++..+  ++++++++|+.++...    
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~----  190 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----  190 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc----
Confidence            3455543  5799999999999999999999876799999999999999999887544  7799999999876422    


Q ss_pred             hhhcccccCCCCceEEEecCCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                                +.+|.|+.|+|+..
T Consensus       191 ----------~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 ----------NIADRILMGYVVRT  204 (278)
T ss_dssp             ----------SCEEEEEECCCSSG
T ss_pred             ----------cCCCEEEECCCCcH
Confidence                      36899999999754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.28  E-value=2.3e-11  Score=104.77  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      +.++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.++++....+-.++++++|+.+. ++    .         
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~----~---------  182 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LP----F---------  182 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GG----G---------
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-Cc----C---------
Confidence            46789999999999999999998865 999999999999999998765442389999998762 21    1         


Q ss_pred             CCceEEEecCCCCC
Q psy17126        129 LPGIRIIGNLPFNV  142 (240)
Q Consensus       129 ~~~~~VvsNlPY~I  142 (240)
                      +++|+|++|+++..
T Consensus       183 ~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          183 GPFDLLVANLYAEL  196 (254)
T ss_dssp             CCEEEEEEECCHHH
T ss_pred             CCCCEEEECCcHHH
Confidence            36899999987643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=2.1e-11  Score=101.10  Aligned_cols=107  Identities=16%  Similarity=0.061  Sum_probs=82.9

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      .+..+.++..+++.+...++.+|||||||+|.++..+++...  .+|+++|+++.+++.++++....+ .+++++++|+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  138 (215)
T 2yxe_A           59 TISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT  138 (215)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG
T ss_pred             EeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            456788999999999888999999999999999999998752  699999999999999998765433 57999999985


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      .. +..            .+++|.|+++.++.-....+.++|.
T Consensus       139 ~~-~~~------------~~~fD~v~~~~~~~~~~~~~~~~L~  168 (215)
T 2yxe_A          139 LG-YEP------------LAPYDRIYTTAAGPKIPEPLIRQLK  168 (215)
T ss_dssp             GC-CGG------------GCCEEEEEESSBBSSCCHHHHHTEE
T ss_pred             cC-CCC------------CCCeeEEEECCchHHHHHHHHHHcC
Confidence            42 211            1468999998775543344444443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.28  E-value=2.5e-11  Score=111.06  Aligned_cols=101  Identities=21%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             HHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +++.+.+.+.  ..++.+|||+|||+|.++..+++.+ .+|++||+|+.+++.+++++...+.+++++++|+.+...+. 
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~-  296 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE-  296 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTT-
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccC-
Confidence            4555555442  3467899999999999999999985 69999999999999999988765556999999998864321 


Q ss_pred             chhhhcccccCCCCceEEEecCCCCC----CHHHHHHHHHh
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNV----STPLIIKWIQA  153 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~I----ss~il~~ll~~  153 (240)
                                  +++|.|++|+||..    .......++..
T Consensus       297 ------------~~fD~Ii~npp~~~~~~~~~~~~~~~l~~  325 (381)
T 3dmg_A          297 ------------ARFDIIVTNPPFHVGGAVILDVAQAFVNV  325 (381)
T ss_dssp             ------------CCEEEEEECCCCCTTCSSCCHHHHHHHHH
T ss_pred             ------------CCeEEEEECCchhhcccccHHHHHHHHHH
Confidence                        46899999999975    23444445543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.28  E-value=8.1e-12  Score=110.95  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=79.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      ...+.+++.+++.+.+.++.+|||+|||+|.+|..++++. ..+|+|+|+|+.|++.+++++...+++++++++|+.+++
T Consensus         9 ~h~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~   88 (301)
T 1m6y_A            9 RHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD   88 (301)
T ss_dssp             SCCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred             cccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence            3456678889999998899999999999999999999985 379999999999999999987655578999999998764


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                        ..+..   .++   .++|.|+.|+|+
T Consensus        89 --~~l~~---~g~---~~~D~Vl~D~gv  108 (301)
T 1m6y_A           89 --FLLKT---LGI---EKVDGILMDLGV  108 (301)
T ss_dssp             --HHHHH---TTC---SCEEEEEEECSC
T ss_pred             --HHHHh---cCC---CCCCEEEEcCcc
Confidence              11111   000   358999999996

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.27  E-value=2e-11  Score=101.56  Aligned_cols=108  Identities=6%  Similarity=0.017  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC------CCeEEEEcc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP------CPVHFHLGD  107 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~------~~v~vi~~D  107 (240)
                      ..+...+.+++.+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.++++....+      .+++++++|
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            3455566677766656788999999999999999998754 699999999999999998764321      289999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +...+...             +++|.|+++-. .++..+.+.+++....
T Consensus        93 ~~~~~~~~-------------~~fD~V~~~~~l~~~~~~~~~~~l~~~~  128 (219)
T 3jwg_A           93 LVYRDKRF-------------SGYDAATVIEVIEHLDENRLQAFEKVLF  128 (219)
T ss_dssp             SSSCCGGG-------------TTCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred             cccccccc-------------CCCCEEEEHHHHHhCCHHHHHHHHHHHH
Confidence            96654322             36788888765 4567665566665544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.27  E-value=5.2e-11  Score=98.98  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.+.+++.+  .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++....+.+++++++|+.+++++.   
T Consensus        28 ~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---  101 (227)
T 1ve3_A           28 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED---  101 (227)
T ss_dssp             HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT---
T ss_pred             HHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC---
Confidence            334444443  347899999999999999999986 49999999999999999887655578999999998865432   


Q ss_pred             hhhcccccCCCCceEEEecCC--CCCCHHHHHHHHHh
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP--FNVSTPLIIKWIQA  153 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP--Y~Iss~il~~ll~~  153 (240)
                                +++|.|++|.+  +. ..+...+++..
T Consensus       102 ----------~~~D~v~~~~~~~~~-~~~~~~~~l~~  127 (227)
T 1ve3_A          102 ----------KTFDYVIFIDSIVHF-EPLELNQVFKE  127 (227)
T ss_dssp             ----------TCEEEEEEESCGGGC-CHHHHHHHHHH
T ss_pred             ----------CcEEEEEEcCchHhC-CHHHHHHHHHH
Confidence                      36899999988  43 22333444444

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.27  E-value=1.4e-11  Score=104.65  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             cCccccCCHHHHHHHHHHc-----CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEE
Q psy17126         29 LSQNFLFEPRLTDKIVRNA-----GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHF  103 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~-----~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~v  103 (240)
                      |.+.........+.+++.+     .+.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++......++++
T Consensus        12 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~   90 (263)
T 2yqz_A           12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQV   90 (263)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEE
T ss_pred             HhhhcccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEE
Confidence            3333334566666666655     56778999999999999999999984 79999999999999999876333478999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++|+.++++++             +.+|.|+++..+
T Consensus        91 ~~~d~~~~~~~~-------------~~fD~v~~~~~l  114 (263)
T 2yqz_A           91 VQADARAIPLPD-------------ESVHGVIVVHLW  114 (263)
T ss_dssp             EESCTTSCCSCT-------------TCEEEEEEESCG
T ss_pred             EEcccccCCCCC-------------CCeeEEEECCch
Confidence            999998876432             367888887664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.27  E-value=2.9e-11  Score=96.84  Aligned_cols=96  Identities=11%  Similarity=0.009  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      ++.+.+...+++.+.+.++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++....+  .++ ++++|+.+
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            3566788888999988899999999999999999999874 3699999999999999999876544  378 88899865


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                       .++..           .+.+|.|+++.++..
T Consensus        87 -~~~~~-----------~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           87 -AFDDV-----------PDNPDVIFIGGGLTA  106 (178)
T ss_dssp             -GGGGC-----------CSCCSEEEECC-TTC
T ss_pred             -hhhcc-----------CCCCCEEEECCcccH
Confidence             33321           036899999887654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.27  E-value=4e-11  Score=99.33  Aligned_cols=133  Identities=13%  Similarity=0.080  Sum_probs=89.5

Q ss_pred             CCCCCCccHHHHHHH-hCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc
Q psy17126          6 LRLPPMPSIRDIIKL-YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP   84 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~   84 (240)
                      +.+.......++++. |.-...-.++++..........+...+...++.+|||||||+|.++..+++.+ .+|+|+|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~   83 (216)
T 3ofk_A            5 FTMVSVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMP   83 (216)
T ss_dssp             CCCCCCSSHHHHHHHHHTSSSGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCH
T ss_pred             eeEEEecchHHHHHHHhcCCCCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCH
Confidence            344444445555443 32212223444433333444555556667778899999999999999999985 6999999999


Q ss_pred             chHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCC-CCCH-HHHHHHHHhc
Q psy17126         85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVST-PLIIKWIQAI  154 (240)
Q Consensus        85 ~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss-~il~~ll~~~  154 (240)
                      .|++.++++.... ++++++++|+.+++. .             +++|.|+++..+ ++.. ..+.+++...
T Consensus        84 ~~~~~a~~~~~~~-~~~~~~~~d~~~~~~-~-------------~~fD~v~~~~~l~~~~~~~~~~~~l~~~  140 (216)
T 3ofk_A           84 RAIGRACQRTKRW-SHISWAATDILQFST-A-------------ELFDLIVVAEVLYYLEDMTQMRTAIDNM  140 (216)
T ss_dssp             HHHHHHHHHTTTC-SSEEEEECCTTTCCC-S-------------CCEEEEEEESCGGGSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccC-CCeEEEEcchhhCCC-C-------------CCccEEEEccHHHhCCCHHHHHHHHHHH
Confidence            9999999876543 589999999988752 1             468999998663 4553 3344445443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.26  E-value=1.1e-11  Score=104.88  Aligned_cols=86  Identities=17%  Similarity=0.036  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc--ccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF--TMQ  114 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~--~~~  114 (240)
                      ..++..+...+ ..++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++....+.+++++++|+.++  +++
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  125 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC
Confidence            45556666554 457889999999999999999876545999999999999999998766557899999999886  433


Q ss_pred             ccchhhhcccccCCCCceEEEe
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIG  136 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~Vvs  136 (240)
                      +             +++|.|++
T Consensus       126 ~-------------~~fD~V~~  134 (236)
T 1zx0_A          126 D-------------GHFDGILY  134 (236)
T ss_dssp             T-------------TCEEEEEE
T ss_pred             C-------------CceEEEEE
Confidence            2             46899998

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.26  E-value=2.6e-11  Score=108.96  Aligned_cols=89  Identities=12%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+.|.+.+...++.+|||||||+|.++..+++.+..+|+|+|+++ |++.++++.+..+  ++++++++|+.+++++.  
T Consensus        53 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--  129 (340)
T 2fyt_A           53 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV--  129 (340)
T ss_dssp             HHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC--
T ss_pred             HHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC--
Confidence            355555556678899999999999999999998656999999996 9999988765543  68999999999876542  


Q ss_pred             hhhhcccccCCCCceEEEecC-CCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNL-PFNV  142 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNl-PY~I  142 (240)
                                 +++|+|+++. +|.+
T Consensus       130 -----------~~~D~Ivs~~~~~~l  144 (340)
T 2fyt_A          130 -----------EKVDVIISEWMGYFL  144 (340)
T ss_dssp             -----------SCEEEEEECCCBTTB
T ss_pred             -----------CcEEEEEEcCchhhc
Confidence                       3689999997 6655

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.26  E-value=3e-11  Score=107.17  Aligned_cols=106  Identities=16%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      ...+.++..+++.+.+.++.+|||||||+|.++..+++.++  .+|+|+|+++.+++.++++....+ .+++++++|+.+
T Consensus        58 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (317)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence            35778999999999999999999999999999999998742  459999999999999998876544 569999999987


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      .....             +++|+|+++.+..-....+.++|.
T Consensus       138 ~~~~~-------------~~fD~Iv~~~~~~~~~~~~~~~Lk  166 (317)
T 1dl5_A          138 GVPEF-------------SPYDVIFVTVGVDEVPETWFTQLK  166 (317)
T ss_dssp             CCGGG-------------CCEEEEEECSBBSCCCHHHHHHEE
T ss_pred             ccccC-------------CCeEEEEEcCCHHHHHHHHHHhcC
Confidence            43211             368999999886544444555554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=9.4e-12  Score=106.90  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=77.5

Q ss_pred             hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEE
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL  105 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~  105 (240)
                      ...|.+....++.+.+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++     .++++++
T Consensus         9 a~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~-----~~~~~~~   82 (261)
T 3ege_A            9 GKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVH-----PQVEWFT   82 (261)
T ss_dssp             ----CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCC-----TTEEEEC
T ss_pred             HHHHhhcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhc-----cCCEEEE
Confidence            345666677788999999999988889999999999999999999864 7999999999998876542     2899999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +|+.++++++             +++|.|+++..+
T Consensus        83 ~d~~~~~~~~-------------~~fD~v~~~~~l  104 (261)
T 3ege_A           83 GYAENLALPD-------------KSVDGVISILAI  104 (261)
T ss_dssp             CCTTSCCSCT-------------TCBSEEEEESCG
T ss_pred             CchhhCCCCC-------------CCEeEEEEcchH
Confidence            9998876532             468998888753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.26  E-value=1.2e-11  Score=107.87  Aligned_cols=89  Identities=18%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~  115 (240)
                      .....+.+.+  .++.+|||+|||+|.++..+++.++.+|+|+|+++.+++.+++++...+  ++++++++|+.++... 
T Consensus       114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~-  190 (278)
T 2frn_A          114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-  190 (278)
T ss_dssp             HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-
T ss_pred             HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhccc-
Confidence            4455555553  4689999999999999999999864479999999999999999876443  4699999999886541 


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                                   ..+|.|++|+|+..
T Consensus       191 -------------~~fD~Vi~~~p~~~  204 (278)
T 2frn_A          191 -------------NIADRILMGYVVRT  204 (278)
T ss_dssp             -------------SCEEEEEECCCSSG
T ss_pred             -------------CCccEEEECCchhH
Confidence                         36899999999754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.26  E-value=2.4e-11  Score=102.89  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=78.9

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      .....+++.+...++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++.... .+++++++|+.+++++.  
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~--  156 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPP--  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCS--
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCC--
Confidence            345667777777788999999999999999999875568999999999999999876543 67999999998876432  


Q ss_pred             hhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                                 +.+|.|+++-.. +++.+...+++...
T Consensus       157 -----------~~fD~v~~~~~l~~~~~~~~~~~l~~~  183 (254)
T 1xtp_A          157 -----------NTYDLIVIQWTAIYLTDADFVKFFKHC  183 (254)
T ss_dssp             -----------SCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             -----------CCeEEEEEcchhhhCCHHHHHHHHHHH
Confidence                       368999887663 45444444555443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.26  E-value=3.9e-11  Score=100.40  Aligned_cols=111  Identities=8%  Similarity=0.020  Sum_probs=82.8

Q ss_pred             ccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhCC------CeEEEEeCCcchHHHHHHHHhcC------C
Q psy17126         33 FLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRRP------ARLVLIEKDPRFTPCLDMLAQAS------P   98 (240)
Q Consensus        33 fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~~------~~V~avEid~~m~~~l~~~~~~~------~   98 (240)
                      .+..+.+...+++.+  .+.++.+|||||||+|.++..+++...      .+|+++|+++.+++.++++....      .
T Consensus        60 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  139 (227)
T 2pbf_A           60 TISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKI  139 (227)
T ss_dssp             EECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSS
T ss_pred             ccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccccc
Confidence            566788888888888  477889999999999999999998742      49999999999999999876543      2


Q ss_pred             CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126         99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus        99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      .+++++++|+.+.........         +++|.|+++.++.-....+.++|.
T Consensus       140 ~~v~~~~~d~~~~~~~~~~~~---------~~fD~I~~~~~~~~~~~~~~~~Lk  184 (227)
T 2pbf_A          140 DNFKIIHKNIYQVNEEEKKEL---------GLFDAIHVGASASELPEILVDLLA  184 (227)
T ss_dssp             TTEEEEECCGGGCCHHHHHHH---------CCEEEEEECSBBSSCCHHHHHHEE
T ss_pred             CCEEEEECChHhcccccCccC---------CCcCEEEECCchHHHHHHHHHhcC
Confidence            579999999987421000111         468999998876533333444443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.25  E-value=3.4e-11  Score=101.82  Aligned_cols=96  Identities=22%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ....+.++..+++.+.+.++.+|||||||+|.++..+++..+.+|+++|+++.+++.++++....+ .+++++.+|+ ..
T Consensus        73 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~  151 (235)
T 1jg1_A           73 TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SK  151 (235)
T ss_dssp             EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GG
T ss_pred             eeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-cc
Confidence            446788999999999988999999999999999999998743799999999999999998876544 5799999998 32


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      +++.            ..++|.|+++.+..
T Consensus       152 ~~~~------------~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A          152 GFPP------------KAPYDVIIVTAGAP  169 (235)
T ss_dssp             CCGG------------GCCEEEEEECSBBS
T ss_pred             CCCC------------CCCccEEEECCcHH
Confidence            3322            13579988876643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=2.6e-11  Score=110.13  Aligned_cols=107  Identities=11%  Similarity=0.160  Sum_probs=83.0

Q ss_pred             hhhhccCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-C
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-C   99 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~   99 (240)
                      .+...|.|.+.+.+.++..++...  ...++.+|||+| |+|.++..++..++ .+|+|+|+|+.|++.+++++...+ .
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~  221 (373)
T 2qm3_A          143 EPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE  221 (373)
T ss_dssp             CCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             ccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            455678887777777776665432  234678999999 99999999998864 699999999999999999876543 3


Q ss_pred             CeEEEEccccc-ccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        100 PVHFHLGDVMS-FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       100 ~v~vi~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +++++++|+.+ ++..  .          .+.+|+|++|+||...
T Consensus       222 ~v~~~~~D~~~~l~~~--~----------~~~fD~Vi~~~p~~~~  254 (373)
T 2qm3_A          222 DIEIFTFDLRKPLPDY--A----------LHKFDTFITDPPETLE  254 (373)
T ss_dssp             CEEEECCCTTSCCCTT--T----------SSCBSEEEECCCSSHH
T ss_pred             CEEEEEChhhhhchhh--c----------cCCccEEEECCCCchH
Confidence            89999999987 4311  0          1368999999999754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.25  E-value=4.5e-11  Score=107.57  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~  116 (240)
                      ..+.|++.+...++.+|||||||+|.++..+++.+..+|+|||+++ |+..++++.+..+  ++++++++|+.+++++  
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--  114 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP--  114 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC--
Confidence            4566777777778899999999999999999988656999999996 8888888765433  6899999999987543  


Q ss_pred             chhhhcccccCCCCceEEEecCCCC-CCHHHHHHHHH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQ  152 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~  152 (240)
                                  +++|+||++.+++ ...+.+...+.
T Consensus       115 ------------~~~D~Ivs~~~~~~~~~~~~~~~l~  139 (348)
T 2y1w_A          115 ------------EQVDIIISEPMGYMLFNERMLESYL  139 (348)
T ss_dssp             ------------SCEEEEEECCCBTTBTTTSHHHHHH
T ss_pred             ------------CceeEEEEeCchhcCChHHHHHHHH
Confidence                        2589999998843 33333334443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.25  E-value=4.4e-11  Score=103.27  Aligned_cols=106  Identities=10%  Similarity=-0.066  Sum_probs=75.9

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc------------------
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA------------------   96 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~------------------   96 (240)
                      .++.+.+.+.......++.+|||+|||+|..+..|++.+ .+|+|||+|+.|++.++++...                  
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~  130 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS  130 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHhccccccccccccccccccccc
Confidence            345555555444444578899999999999999999985 6999999999999999765421                  


Q ss_pred             CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHh
Q psy17126         97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQA  153 (240)
Q Consensus        97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~  153 (240)
                      ...+++++++|+.++++...            ++||.|+++-.+ .+..+....++..
T Consensus       131 ~~~~i~~~~~D~~~l~~~~~------------~~FD~V~~~~~l~~l~~~~~~~~l~~  176 (252)
T 2gb4_A          131 SSGSISLYCCSIFDLPRANI------------GKFDRIWDRGALVAINPGDHDRYADI  176 (252)
T ss_dssp             TTSSEEEEESCTTTGGGGCC------------CCEEEEEESSSTTTSCGGGHHHHHHH
T ss_pred             CCCceEEEECccccCCcccC------------CCEEEEEEhhhhhhCCHHHHHHHHHH
Confidence            13679999999998765321            368999987554 3433333344443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.25  E-value=1.2e-11  Score=102.67  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      ...+++.+.+.++.+|||||||+|.++..+++.+  ..+|+|+|+++.+++.++++....+ .+++++++|+.++++++ 
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-  104 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD-  104 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS-
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC-
Confidence            4667777888889999999999999999999874  2699999999999999998765433 57999999998876432 


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                  +++|.|+++..+
T Consensus       105 ------------~~fD~v~~~~~l  116 (219)
T 3dh0_A          105 ------------NTVDFIFMAFTF  116 (219)
T ss_dssp             ------------SCEEEEEEESCG
T ss_pred             ------------CCeeEEEeehhh
Confidence                        368999987664

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.25  E-value=5.9e-11  Score=103.84  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~  116 (240)
                      .++.+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....+  ++++++++|+.++  .  
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~--  135 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--D--  135 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--C--
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--C--
Confidence            556788888888999999999999999999999833799999999999999998876543  5899999999875  1  


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                  +++|.|+++..+
T Consensus       136 ------------~~fD~v~~~~~~  147 (302)
T 3hem_A          136 ------------EPVDRIVSLGAF  147 (302)
T ss_dssp             ------------CCCSEEEEESCG
T ss_pred             ------------CCccEEEEcchH
Confidence                        368999988664

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.24  E-value=9.8e-12  Score=118.62  Aligned_cols=113  Identities=18%  Similarity=0.099  Sum_probs=85.2

Q ss_pred             HHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC----------------CCeEEEE
Q psy17126         17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR----------------PARLVLI   80 (240)
Q Consensus        17 ~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~----------------~~~V~av   80 (240)
                      +++.+.-..+++.|| |.+++.+++.|++.+.+.++ +|+|.+||||.+...+++..                ...++|+
T Consensus       212 ll~~~a~~~~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~  289 (544)
T 3khk_A          212 FLGQFALAEGKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQ  289 (544)
T ss_dssp             HHHHHHHTTTCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEEC
T ss_pred             HHHHHHHhhCccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEE
Confidence            344444445678899 88999999999999988766 99999999999988775421                2479999


Q ss_pred             eCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126         81 EKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus        81 Eid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      |+++.++..++.++...+  .++.++++|.+..+..            ...++|+||+||||...
T Consensus       290 Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~------------~~~~fD~Iv~NPPf~~~  342 (544)
T 3khk_A          290 ESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH------------PDLRADFVMTNPPFNMK  342 (544)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC------------TTCCEEEEEECCCSSCC
T ss_pred             eCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc------------ccccccEEEECCCcCCc
Confidence            999999999988764333  3444488888764321            11468999999999863

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.24  E-value=8.7e-11  Score=98.46  Aligned_cols=101  Identities=10%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             HHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      ...+.+++.+. ..++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.... ++++++++|+.++++. 
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~-  107 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-LKVKYIEADYSKYDFE-  107 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-TTEEEEESCTTTCCCC-
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-CCEEEEeCchhccCCC-
Confidence            34456666665 4577999999999999999999985 369999999999999999876543 4899999999987654 


Q ss_pred             cchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHh
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQA  153 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~  153 (240)
                                   +.+|.|+++..+ +++.+....++..
T Consensus       108 -------------~~fD~v~~~~~l~~~~~~~~~~~l~~  133 (234)
T 3dtn_A          108 -------------EKYDMVVSALSIHHLEDEDKKELYKR  133 (234)
T ss_dssp             -------------SCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             -------------CCceEEEEeCccccCCHHHHHHHHHH
Confidence                         257999988774 4555543334443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=112.84  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++++|||||||||.|+..+++.++.+|+|||.++ |+..++++++..  .++++++++|+.++++++            
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe------------  148 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPE------------  148 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSS------------
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCc------------
Confidence            47899999999999999999998878999999996 889998876543  378999999999987653            


Q ss_pred             CCCceEEEecCC
Q psy17126        128 GLPGIRIIGNLP  139 (240)
Q Consensus       128 ~~~~~~VvsNlP  139 (240)
                        ++|+|||++-
T Consensus       149 --~~DvivsE~~  158 (376)
T 4hc4_A          149 --QVDAIVSEWM  158 (376)
T ss_dssp             --CEEEEECCCC
T ss_pred             --cccEEEeecc
Confidence              5799998654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.24  E-value=4e-11  Score=101.53  Aligned_cols=89  Identities=13%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~  115 (240)
                      ......+++.+.+.++.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++....+ .+++++++|+.++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            4456678888899999999999999999999999986 699999999999999988765433 57999999998876432


Q ss_pred             cchhhhcccccCCCCceEEEecCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                   +.+|.|+++..
T Consensus        86 -------------~~fD~v~~~~~   96 (239)
T 1xxl_A           86 -------------DSFDIITCRYA   96 (239)
T ss_dssp             -------------TCEEEEEEESC
T ss_pred             -------------CcEEEEEECCc
Confidence                         36899998854

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.24  E-value=3.6e-11  Score=104.21  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccc
Q psy17126         45 RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      +.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++....+.+++++++|+.+.++.          
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----------  182 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQ----------  182 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCC----------
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccccc----------
Confidence            33333478899999999999999999985 6999999999999999998765545899999999886641          


Q ss_pred             ccCCCCceEEEecCCCC-CCHHHHHHHHHhc
Q psy17126        125 WSEGLPGIRIIGNLPFN-VSTPLIIKWIQAI  154 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~-Iss~il~~ll~~~  154 (240)
                          +++|.|+++.++. ++.+.+..++...
T Consensus       183 ----~~fD~i~~~~~~~~~~~~~~~~~l~~~  209 (286)
T 3m70_A          183 ----ENYDFIVSTVVFMFLNRERVPSIIKNM  209 (286)
T ss_dssp             ----SCEEEEEECSSGGGSCGGGHHHHHHHH
T ss_pred             ----CCccEEEEccchhhCCHHHHHHHHHHH
Confidence                3689999998754 4445455555544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.23  E-value=3.5e-11  Score=106.03  Aligned_cols=86  Identities=10%  Similarity=0.041  Sum_probs=71.2

Q ss_pred             HHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      +.+++.+. +.++.+|||||||+|.++..++++...+|+|+|+++.+++.++++....+  ++++++++|+.++++++  
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--  183 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK--  183 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC--
Confidence            44666776 77899999999999999999998733699999999999999998876544  57999999999876432  


Q ss_pred             hhhhcccccCCCCceEEEecCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                 +.+|.|+++-.
T Consensus       184 -----------~~fD~V~~~~~  194 (312)
T 3vc1_A          184 -----------GAVTASWNNES  194 (312)
T ss_dssp             -----------TCEEEEEEESC
T ss_pred             -----------CCEeEEEECCc
Confidence                       46899988755

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.23  E-value=3.4e-11  Score=113.27  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+.+++.+...++.+|||||||+|.++..+++.+..+|+|+|+++ |++.+++++...+  ++++++++|+.+++++   
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---  222 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---  222 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC---
Confidence            445666666667889999999999999999987556999999998 9999988766543  6899999999886543   


Q ss_pred             hhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                                 +++|+||+|+| |....+-....+..
T Consensus       223 -----------~~fD~Ivs~~~~~~~~~e~~~~~l~~  248 (480)
T 3b3j_A          223 -----------EQVDIIISEPMGYMLFNERMLESYLH  248 (480)
T ss_dssp             -----------SCEEEEECCCCHHHHTCHHHHHHHHH
T ss_pred             -----------CCeEEEEEeCchHhcCcHHHHHHHHH
Confidence                       25899999998 54443434444433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.23  E-value=5.7e-11  Score=101.12  Aligned_cols=93  Identities=24%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      +.+..+..++..+.+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++++..+  ++++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            34666778899999999999999999999999999998 4 4799999999999999999875433  459999999985


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      . +++             +.+|.|++|+|..
T Consensus       157 ~-~~~-------------~~~D~v~~~~~~~  173 (255)
T 3mb5_A          157 G-IEE-------------ENVDHVILDLPQP  173 (255)
T ss_dssp             C-CCC-------------CSEEEEEECSSCG
T ss_pred             c-cCC-------------CCcCEEEECCCCH
Confidence            4 221             3589999999854

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.23  E-value=7.2e-11  Score=96.00  Aligned_cols=97  Identities=10%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      .+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.++++....+ .+++++++|+.++++ .     
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~-----   95 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-D-----   95 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-C-----
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-C-----
Confidence            45556666678899999999999999999984 699999999999999998765433 479999999988654 1     


Q ss_pred             hcccccCCCCceEEEecCCCC-CCHHHHHHHHHh
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQA  153 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~~  153 (240)
                              +++|.|+++.++. ++.+...+++..
T Consensus        96 --------~~~D~v~~~~~l~~~~~~~~~~~l~~  121 (199)
T 2xvm_A           96 --------RQYDFILSTVVLMFLEAKTIPGLIAN  121 (199)
T ss_dssp             --------CCEEEEEEESCGGGSCGGGHHHHHHH
T ss_pred             --------CCceEEEEcchhhhCCHHHHHHHHHH
Confidence                    3689999987744 332233344443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.23  E-value=3.1e-11  Score=100.51  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..+++..+ .+|+|||+++.+++.+++++...+ .+++++++|+.+++  ..++.        
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~--------  109 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--DYFED--------  109 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--GTSCT--------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH--hhcCC--------
Confidence            3578999999999999999999853 699999999999999998775443 68999999998743  21211        


Q ss_pred             CCCceEEEecCCC
Q psy17126        128 GLPGIRIIGNLPF  140 (240)
Q Consensus       128 ~~~~~~VvsNlPY  140 (240)
                       +.+|.|++|.|-
T Consensus       110 -~~~D~i~~~~~~  121 (214)
T 1yzh_A          110 -GEIDRLYLNFSD  121 (214)
T ss_dssp             -TCCSEEEEESCC
T ss_pred             -CCCCEEEEECCC
Confidence             468999999874

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.23  E-value=7.4e-11  Score=101.10  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccc
Q psy17126         35 FEPRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM  109 (240)
Q Consensus        35 ~d~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~  109 (240)
                      ....+...++..+.   ++++++|||+|||||.+|..++...  .++|+|+|+++.|++.+.+.+... .|+.++++|+.
T Consensus        57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~  135 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADAR  135 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTT
T ss_pred             HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccc
Confidence            35567777877665   7899999999999999999999862  369999999999986665444332 68999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCCHHHH
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI  147 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il  147 (240)
                      ..+.....          .+++|+|++|.|......++
T Consensus       136 ~~~~~~~~----------~~~~D~I~~d~a~~~~~~il  163 (232)
T 3id6_C          136 FPQSYKSV----------VENVDVLYVDIAQPDQTDIA  163 (232)
T ss_dssp             CGGGTTTT----------CCCEEEEEECCCCTTHHHHH
T ss_pred             cchhhhcc----------ccceEEEEecCCChhHHHHH
Confidence            64321111          13689999998873333333

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.23  E-value=4.5e-11  Score=106.54  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CC-CeEEEEeCCcchHHHHHHHHhcC------------CCC
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RP-ARLVLIEKDPRFTPCLDMLAQAS------------PCP  100 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~-~~V~avEid~~m~~~l~~~~~~~------------~~~  100 (240)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++. ++ .+|+|+|+++.+++.++++....            ..+
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            45666788888889999999999999999999999987 44 79999999999999999987531            268


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ++++++|+.+... .+ +.         +.+|.|++|+|-.
T Consensus       169 v~~~~~d~~~~~~-~~-~~---------~~fD~V~~~~~~~  198 (336)
T 2b25_A          169 VDFIHKDISGATE-DI-KS---------LTFDAVALDMLNP  198 (336)
T ss_dssp             EEEEESCTTCCC------------------EEEEEECSSST
T ss_pred             eEEEECChHHccc-cc-CC---------CCeeEEEECCCCH
Confidence            9999999987521 11 11         3589999998743

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.22  E-value=5.9e-11  Score=102.37  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=78.1

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEcc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGD  107 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D  107 (240)
                      .+.+..+..+++.+.+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....    ..+++++++|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            356778888999999999999999999999999999985 2 379999999999999999876543    3689999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +.+.+++.             +.+|.|++|+|
T Consensus       162 ~~~~~~~~-------------~~~D~v~~~~~  180 (280)
T 1i9g_A          162 LADSELPD-------------GSVDRAVLDML  180 (280)
T ss_dssp             GGGCCCCT-------------TCEEEEEEESS
T ss_pred             hHhcCCCC-------------CceeEEEECCc
Confidence            98865322             36899999987

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.22  E-value=5.3e-11  Score=98.08  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      +.++.+|||+|||+|.++..+++.+..+|+|+|+++.|++.++++....+ .+++++++|+.+..  .            
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~------------  123 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--D------------  123 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--C------------
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--C------------
Confidence            45788999999999999999998755699999999999999999876544 34999999997642  1            


Q ss_pred             CCCceEEEecCCCC
Q psy17126        128 GLPGIRIIGNLPFN  141 (240)
Q Consensus       128 ~~~~~~VvsNlPY~  141 (240)
                       +.+|.|++|.|+.
T Consensus       124 -~~fD~i~~~~~~~  136 (205)
T 3grz_A          124 -GKFDLIVANILAE  136 (205)
T ss_dssp             -SCEEEEEEESCHH
T ss_pred             -CCceEEEECCcHH
Confidence             3689999998763

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.22  E-value=2.7e-11  Score=110.73  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=76.5

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--C-CeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--C-PVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~-~v~vi~~D~~  109 (240)
                      |..++.....++...- .++.+|||+|||+|.++..++..++.+|+|||+++.+++.++++++..+  + +++++++|+.
T Consensus       195 ff~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          195 IFLDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             SCGGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            4467766666665542 5788999999999999999998765699999999999999999876544  3 8999999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ++ ++.+..        .+.++|+||.|+||.
T Consensus       274 ~~-l~~~~~--------~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          274 DY-FKYARR--------HHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HH-HHHHHH--------TTCCEEEEEECCCCC
T ss_pred             HH-HHHHHH--------hCCCccEEEECCCCC
Confidence            73 111110        013689999999985

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.22  E-value=9e-11  Score=99.65  Aligned_cols=93  Identities=19%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcC-C-CCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQAS-P-CPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~-~-~~v~vi~~D~~~  110 (240)
                      ..+..+..+++.+.+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++.... + ++++++++|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~  159 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE  159 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence            44556678888888889999999999999999999987 3 379999999999999999876543 3 689999999987


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .++++             +.+|.|++|+|.
T Consensus       160 ~~~~~-------------~~~D~v~~~~~~  176 (258)
T 2pwy_A          160 AELEE-------------AAYDGVALDLME  176 (258)
T ss_dssp             CCCCT-------------TCEEEEEEESSC
T ss_pred             cCCCC-------------CCcCEEEECCcC
Confidence            64332             368999999874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.21  E-value=1.8e-11  Score=109.98  Aligned_cols=100  Identities=10%  Similarity=-0.039  Sum_probs=73.8

Q ss_pred             ccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--C-CeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--C-PVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~-~v~vi~~D~  108 (240)
                      |+-.......+.+.+. ..++.+|||+|||+|.++..++..++ +|++||+|+.+++.+++++...+  + +++++++|+
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~  212 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA  212 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcH
Confidence            4444445455555553 34678999999999999999999864 99999999999999999875433  2 599999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .++.. .....        ..++|+||+|+||.-
T Consensus       213 ~~~l~-~~~~~--------~~~fD~Ii~dPP~~~  237 (332)
T 2igt_A          213 MKFIQ-REERR--------GSTYDIILTDPPKFG  237 (332)
T ss_dssp             HHHHH-HHHHH--------TCCBSEEEECCCSEE
T ss_pred             HHHHH-HHHhc--------CCCceEEEECCcccc
Confidence            87521 11000        136899999999643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.21  E-value=7.5e-11  Score=107.33  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.|.+.....++.+|||||||+|.++..+++.+..+|+|||++ .|++.++++....+  ++++++++|+.+++++    
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----  127 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----  127 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----
Confidence            3444444567889999999999999999999865699999999 99999998776543  6699999999987654    


Q ss_pred             hhhcccccCCCCceEEEecC-CCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNL-PFNVS  143 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNl-PY~Is  143 (240)
                                +++|+|++++ +|.+.
T Consensus       128 ----------~~~D~Iv~~~~~~~l~  143 (376)
T 3r0q_C          128 ----------EKVDVIISEWMGYFLL  143 (376)
T ss_dssp             ----------SCEEEEEECCCBTTBT
T ss_pred             ----------CcceEEEEcChhhccc
Confidence                      2589999987 45553

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.21  E-value=5.4e-11  Score=103.47  Aligned_cols=95  Identities=8%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHc----CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccc
Q psy17126         37 PRLTDKIVRNA----GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMS  110 (240)
Q Consensus        37 ~~i~~~iv~~~----~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~  110 (240)
                      ...++.+++.+    .+.++.+|||||||+|.++..+++....+|+|+|+++.|++.++++....  .++++++++|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            34667788888    77889999999999999999999873369999999999999998876432  3689999999998


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCC-CCCCH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVST  144 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss  144 (240)
                      +++++             +++|.|+++-. +++..
T Consensus       144 ~~~~~-------------~~fD~v~~~~~l~~~~~  165 (297)
T 2o57_A          144 IPCED-------------NSYDFIWSQDAFLHSPD  165 (297)
T ss_dssp             CSSCT-------------TCEEEEEEESCGGGCSC
T ss_pred             CCCCC-------------CCEeEEEecchhhhcCC
Confidence            76543             36788888754 34443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.21  E-value=7.7e-11  Score=98.54  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=78.0

Q ss_pred             ccCCHHHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcC------CCCeE
Q psy17126         33 FLFEPRLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQAS------PCPVH  102 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~------~~~v~  102 (240)
                      .+.++.+...+++.+.  +.++.+|||||||+|.++..+++.. + .+|+++|+++.+++.++++....      .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            4667888888888886  7789999999999999999999873 2 59999999999999999876542      25799


Q ss_pred             EEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++++|+.......             +++|.|+++.|+.-
T Consensus       137 ~~~~d~~~~~~~~-------------~~fD~i~~~~~~~~  163 (226)
T 1i1n_A          137 LVVGDGRMGYAEE-------------APYDAIHVGAAAPV  163 (226)
T ss_dssp             EEESCGGGCCGGG-------------CCEEEEEECSBBSS
T ss_pred             EEECCcccCcccC-------------CCcCEEEECCchHH
Confidence            9999997543211             36899999888643

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.21  E-value=5e-11  Score=106.47  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+.|.+.+...++.+|||||||+|.++..+++.+..+|+|+|++ .|++.++++....+  ++++++++|+.+++++.  
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--  103 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--  103 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS--
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC--
Confidence            34444444556788999999999999999998865699999999 69999988765433  67999999999876542  


Q ss_pred             hhhhcccccCCCCceEEEecCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                 +++|+|+++++.
T Consensus       104 -----------~~~D~Ivs~~~~  115 (328)
T 1g6q_1          104 -----------PKVDIIISEWMG  115 (328)
T ss_dssp             -----------SCEEEEEECCCB
T ss_pred             -----------CcccEEEEeCch
Confidence                       368999999873

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.21  E-value=5.7e-11  Score=97.62  Aligned_cols=107  Identities=11%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHc-CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126         36 EPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        36 d~~i~~~iv~~~-~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~  114 (240)
                      +.....++++.+ ...++.+|||+|||+|.++..++.....+|+|+|+|+.|++.++++....+.+++++++|+.+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   86 (209)
T 2p8j_A            7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFK   86 (209)
T ss_dssp             SCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSC
T ss_pred             hhhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCC
Confidence            333444444433 2356789999999999985544443346999999999999999987654446799999999887643


Q ss_pred             ccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +             +++|.|+++-. ++++.+...+++....
T Consensus        87 ~-------------~~fD~v~~~~~l~~~~~~~~~~~l~~~~  115 (209)
T 2p8j_A           87 D-------------ESMSFVYSYGTIFHMRKNDVKEAIDEIK  115 (209)
T ss_dssp             T-------------TCEEEEEECSCGGGSCHHHHHHHHHHHH
T ss_pred             C-------------CceeEEEEcChHHhCCHHHHHHHHHHHH
Confidence            2             36899988754 4565455555555443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.20  E-value=5.7e-11  Score=100.87  Aligned_cols=86  Identities=9%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ...+.+.+...++.+|||||||+|.++..+++.+..+|+|+|+++.|++.++++..  ..+++++++|+.++++++    
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~----  106 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEP----  106 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCT----
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCC----
Confidence            34455666666889999999999999999999864599999999999999988654  478999999998876432    


Q ss_pred             hhcccccCCCCceEEEecCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY  140 (240)
                               +++|+|+++..+
T Consensus       107 ---------~~fD~v~~~~~l  118 (253)
T 3g5l_A          107 ---------DAYNVVLSSLAL  118 (253)
T ss_dssp             ---------TCEEEEEEESCG
T ss_pred             ---------CCeEEEEEchhh
Confidence                     468999988764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.20  E-value=1.1e-10  Score=108.48  Aligned_cols=100  Identities=12%  Similarity=0.029  Sum_probs=76.8

Q ss_pred             hccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHH-------HHHHhcCC
Q psy17126         27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCL-------DMLAQASP   98 (240)
Q Consensus        27 k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l-------~~~~~~~~   98 (240)
                      ..|||.   .+.++..+++.+.+.++.+|||||||+|.++..++.. ++.+|+|||+++.+++.+       ++++...+
T Consensus       221 ~~yGet---~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          221 YVYGEL---LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             GCCCCB---CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccc---cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC
Confidence            456664   3889999999999999999999999999999999986 345899999999998888       77765544


Q ss_pred             ---CCeEEEEccccccc--ccccchhhhcccccCCCCceEEEecCCC
Q psy17126         99 ---CPVHFHLGDVMSFT--MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus        99 ---~~v~vi~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                         .+++++++|....+  +....           +++|+|++|...
T Consensus       298 l~~~nV~~i~gD~~~~~~~~~~~~-----------~~FDvIvvn~~l  333 (433)
T 1u2z_A          298 MRLNNVEFSLKKSFVDNNRVAELI-----------PQCDVILVNNFL  333 (433)
T ss_dssp             BCCCCEEEEESSCSTTCHHHHHHG-----------GGCSEEEECCTT
T ss_pred             CCCCceEEEEcCcccccccccccc-----------CCCCEEEEeCcc
Confidence               68999998755321  11100           257999987543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.20  E-value=8.5e-11  Score=102.19  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=76.7

Q ss_pred             ccCCHHHHHHHHHHc-CCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~-~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~  109 (240)
                      +..++..+..+++.+ .+.++.+|||||||+|.++..+++..+  .+|+|+|+|+.+++.++++....+.+++++++|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~   82 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT   82 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence            445677888888776 556789999999999999999998742  69999999999999999987665568999999999


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +++++              +++|.|+++..
T Consensus        83 ~~~~~--------------~~fD~v~~~~~   98 (284)
T 3gu3_A           83 EIELN--------------DKYDIAICHAF   98 (284)
T ss_dssp             TCCCS--------------SCEEEEEEESC
T ss_pred             hcCcC--------------CCeeEEEECCh
Confidence            86642              25788888776

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.20  E-value=7.4e-11  Score=103.08  Aligned_cols=103  Identities=13%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEcccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMSF  111 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~~  111 (240)
                      ....+..+++.+...++ +|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....+    .+++++++|+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            45667788888775444 99999999999999999985 799999999999999999876554    6899999999987


Q ss_pred             cccccchhhhcccccCCCCceEEE-ecC-CCCCCHHHHHHHHHhc
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRII-GNL-PFNVSTPLIIKWIQAI  154 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~Vv-sNl-PY~Iss~il~~ll~~~  154 (240)
                      +++              +++|.|+ ++. -..++.+.+.+++...
T Consensus       146 ~~~--------------~~fD~v~~~~~~~~~~~~~~~~~~l~~~  176 (299)
T 3g2m_A          146 ALD--------------KRFGTVVISSGSINELDEADRRGLYASV  176 (299)
T ss_dssp             CCS--------------CCEEEEEECHHHHTTSCHHHHHHHHHHH
T ss_pred             CcC--------------CCcCEEEECCcccccCCHHHHHHHHHHH
Confidence            652              3578777 333 2344544445555543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.20  E-value=1.1e-10  Score=98.57  Aligned_cols=88  Identities=15%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             HHHHHH---HHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc---
Q psy17126         38 RLTDKI---VRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS---  110 (240)
Q Consensus        38 ~i~~~i---v~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~---  110 (240)
                      .++..+   ++.+.+.++.+|||+|||+|.++..++... ..+|+|+|+++.|++.+++++... .+++++.+|+.+   
T Consensus        58 ~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~  136 (230)
T 1fbn_A           58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQE  136 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGG
T ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCccc
Confidence            344666   555566788999999999999999999984 379999999999999999876544 789999999987   


Q ss_pred             -ccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        111 -FTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       111 -~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                       .++.              ..+|.|+.++|.
T Consensus       137 ~~~~~--------------~~~D~v~~~~~~  153 (230)
T 1fbn_A          137 YANIV--------------EKVDVIYEDVAQ  153 (230)
T ss_dssp             GTTTS--------------CCEEEEEECCCS
T ss_pred             ccccC--------------ccEEEEEEecCC
Confidence             2221              358999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=96.07  Aligned_cols=93  Identities=4%  Similarity=0.033  Sum_probs=71.3

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      +..+...+..++... +.++.+|||||||+|.++..+++.+..+|+|+|+++.+++.++++... .++++++++|+.+++
T Consensus        25 ~~~~~~~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~~~~~  102 (215)
T 2pxx_A           25 WFGDFSSFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-VPQLRWETMDVRKLD  102 (215)
T ss_dssp             TTCCHHHHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-CTTCEEEECCTTSCC
T ss_pred             cccCHHHHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-CCCcEEEEcchhcCC
Confidence            444444444444332 357889999999999999999998645999999999999999987653 368999999998875


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++             +.+|.|+++.++
T Consensus       103 ~~~-------------~~fD~v~~~~~~  117 (215)
T 2pxx_A          103 FPS-------------ASFDVVLEKGTL  117 (215)
T ss_dssp             SCS-------------SCEEEEEEESHH
T ss_pred             CCC-------------CcccEEEECcch
Confidence            432             368999998765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.19  E-value=6.5e-11  Score=101.37  Aligned_cols=89  Identities=11%  Similarity=-0.048  Sum_probs=70.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .++++|+|||||+|.++..+++.+ ..+|+|+|+++.+++.++++++..+  ++++++++|.++...+.           
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~-----------   88 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA-----------   88 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-----------
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc-----------
Confidence            467899999999999999999986 3589999999999999999987654  57999999998753221           


Q ss_pred             CCCCceE-EEecCCCCCCHHHHHHHHHhcc
Q psy17126        127 EGLPGIR-IIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       127 ~~~~~~~-VvsNlPY~Iss~il~~ll~~~~  155 (240)
                        .++|. |++|    +...++.++++...
T Consensus        89 --~~~D~IviaG----mGg~lI~~IL~~~~  112 (230)
T 3lec_A           89 --DNIDTITICG----MGGRLIADILNNDI  112 (230)
T ss_dssp             --GCCCEEEEEE----ECHHHHHHHHHHTG
T ss_pred             --cccCEEEEeC----CchHHHHHHHHHHH
Confidence              13565 4566    66677777777654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.19  E-value=4.1e-11  Score=109.57  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC---CeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~---~v~vi~~D~~  109 (240)
                      |..+......++...  .++.+|||+|||+|.++..++..++.+|+|||+++.+++.+++++...+-   +++++++|+.
T Consensus       204 ff~~~~~~~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~  281 (396)
T 3c0k_A          204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_dssp             SCGGGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred             cCcCHHHHHHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            333444444445444  47889999999999999999998657999999999999999998765432   7999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ++. ..+..        .+.++|.||.|+||...
T Consensus       282 ~~~-~~~~~--------~~~~fD~Ii~dpP~~~~  306 (396)
T 3c0k_A          282 KLL-RTYRD--------RGEKFDVIVMDPPKFVE  306 (396)
T ss_dssp             HHH-HHHHH--------TTCCEEEEEECCSSTTT
T ss_pred             HHH-HHHHh--------cCCCCCEEEECCCCCCC
Confidence            752 11110        01368999999998543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.19  E-value=1.5e-10  Score=97.76  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=77.1

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      ++.+..+..++..+.+.++++|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+  ++++++++|+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA  152 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc
Confidence            455777778899999889999999999999999999998 5799999999999999998775543  6899999999874


Q ss_pred             cccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .+..             ..+|.|++|+|
T Consensus       153 ~~~~-------------~~~D~v~~~~~  167 (248)
T 2yvl_A          153 EVPE-------------GIFHAAFVDVR  167 (248)
T ss_dssp             CCCT-------------TCBSEEEECSS
T ss_pred             ccCC-------------CcccEEEECCc
Confidence            3111             35899999987

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.19  E-value=5.3e-11  Score=99.99  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=82.6

Q ss_pred             cCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhCC-------CeEEEEeCCcchHHHHHHHHhcC--
Q psy17126         29 LSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRRP-------ARLVLIEKDPRFTPCLDMLAQAS--   97 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~~-------~~V~avEid~~m~~~l~~~~~~~--   97 (240)
                      +|| .+..+.+...+++.+  .+.++.+|||||||+|.++..+++...       .+|+++|+++.+++.++++....  
T Consensus        61 ~~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  139 (227)
T 1r18_A           61 GGV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR  139 (227)
T ss_dssp             TTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCc
Confidence            444 566889999999988  477889999999999999999998532       49999999999999999876542  


Q ss_pred             ----CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHH
Q psy17126         98 ----PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI  151 (240)
Q Consensus        98 ----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll  151 (240)
                          ..+++++++|+.+ .++.            ..++|.|+++.+..-....+.++|
T Consensus       140 ~~~~~~~v~~~~~d~~~-~~~~------------~~~fD~I~~~~~~~~~~~~~~~~L  184 (227)
T 1r18_A          140 SMLDSGQLLIVEGDGRK-GYPP------------NAPYNAIHVGAAAPDTPTELINQL  184 (227)
T ss_dssp             HHHHHTSEEEEESCGGG-CCGG------------GCSEEEEEECSCBSSCCHHHHHTE
T ss_pred             cccCCCceEEEECCccc-CCCc------------CCCccEEEECCchHHHHHHHHHHh
Confidence                2579999999976 2222            136899999887544333334444

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.19  E-value=5.6e-11  Score=105.73  Aligned_cols=93  Identities=10%  Similarity=0.016  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      +......++..+.+.++.+|||+|||+|..|..+++..  .++|+|+|+++.+++.++++++..+ .+++++++|+.+++
T Consensus       103 qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~  182 (315)
T 1ixk_A          103 QEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG  182 (315)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred             eCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc
Confidence            33344445666788899999999999999999999863  3699999999999999999876544 57999999998764


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ..             .+.+|.|++|+|+.
T Consensus       183 ~~-------------~~~fD~Il~d~Pcs  198 (315)
T 1ixk_A          183 EL-------------NVEFDKILLDAPCT  198 (315)
T ss_dssp             GG-------------CCCEEEEEEECCTT
T ss_pred             cc-------------cccCCEEEEeCCCC
Confidence            31             13689999999964

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.18  E-value=5.6e-11  Score=107.10  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      +.++.+|||||||+|.++..+++.+..+|+|||++ .|++.++++....+  ++++++++|+.+++++.           
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------  131 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV-----------  131 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS-----------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC-----------
Confidence            45788999999999999999999865699999999 59999998776543  56999999999986542           


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +++|+|+++++
T Consensus       132 --~~fD~Iis~~~  142 (349)
T 3q7e_A          132 --EKVDIIISEWM  142 (349)
T ss_dssp             --SCEEEEEECCC
T ss_pred             --CceEEEEEccc
Confidence              46899999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.18  E-value=7.7e-11  Score=99.99  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFH  104 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi  104 (240)
                      ...|.+..-........+++.+...++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++    ..+++++
T Consensus         8 ~~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~   83 (259)
T 2p35_A            8 AQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFG   83 (259)
T ss_dssp             CGGGBCCCCGGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEE
Confidence            344555444456677788888888888999999999999999999873 36999999999999999875    3579999


Q ss_pred             EcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        105 LGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       105 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ++|+.+++ .+             +.+|.|+++..+.
T Consensus        84 ~~d~~~~~-~~-------------~~fD~v~~~~~l~  106 (259)
T 2p35_A           84 KADLATWK-PA-------------QKADLLYANAVFQ  106 (259)
T ss_dssp             ECCTTTCC-CS-------------SCEEEEEEESCGG
T ss_pred             ECChhhcC-cc-------------CCcCEEEEeCchh
Confidence            99998865 21             3689999987743

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.18  E-value=2.2e-11  Score=105.94  Aligned_cols=94  Identities=11%  Similarity=0.013  Sum_probs=73.0

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..++..+.+.++.+|||+|||+|..|..+++..  .++|+|+|+++.+++.++++++..+ .+++++++|+.+++..  +
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~--~  150 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY--L  150 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH--H
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh--h
Confidence            344556678889999999999999999999853  3699999999999999999877655 5899999999875421  0


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ..       ..+.+|.|++++||.-.
T Consensus       151 ~~-------~~~~fD~Vl~d~Pcs~~  169 (274)
T 3ajd_A          151 LK-------NEIFFDKILLDAPCSGN  169 (274)
T ss_dssp             HH-------TTCCEEEEEEEECCC--
T ss_pred             hh-------ccccCCEEEEcCCCCCC
Confidence            00       01468999999998653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.18  E-value=2.1e-10  Score=100.17  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcC---CCCeEEEEccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMS  110 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~---~~~v~vi~~D~~~  110 (240)
                      .+.+.+.+.+... .++.+|||||||+|.++..+++.  ...+|+|+|+++.|++.++++....   ..+++++++|+.+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            4556666666543 57899999999999999999963  2479999999999999999987654   4789999999998


Q ss_pred             ccccc--cchhhhcccccCCCCceEEEecCCC
Q psy17126        111 FTMQN--MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       111 ~~~~~--~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++..  .+.         .+++|.|+++...
T Consensus       101 ~~~~~~~~~~---------~~~fD~V~~~~~l  123 (299)
T 3g5t_A          101 FKFLGADSVD---------KQKIDMITAVECA  123 (299)
T ss_dssp             CGGGCTTTTT---------SSCEEEEEEESCG
T ss_pred             CCcccccccc---------CCCeeEEeHhhHH
Confidence            76543  000         1468999998763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.18  E-value=1.5e-10  Score=100.33  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      .+..+..++..+.+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++....+  ++++++++|+.+.
T Consensus        97 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A           97 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            4555678888889899999999999999999999988 4 3799999999999999999876544  5799999999875


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                       +++             +.+|.|++|+|..
T Consensus       177 -~~~-------------~~~D~V~~~~~~~  192 (277)
T 1o54_A          177 -FDE-------------KDVDALFLDVPDP  192 (277)
T ss_dssp             -CSC-------------CSEEEEEECCSCG
T ss_pred             -ccC-------------CccCEEEECCcCH
Confidence             221             3589999999864

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.18  E-value=8.1e-11  Score=105.57  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+.+++.+...++.+|||+|||+|.++..+++.++ .+|+++|+|+.|++.++++....+.+++++.+|+.+..  .  
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~--  259 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--K--  259 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--C--
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--c--
Confidence            466777777666778999999999999999999864 59999999999999999987665555788999987632  1  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCC----CHHHHHHHHHhcc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNV----STPLIIKWIQAIS  155 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~I----ss~il~~ll~~~~  155 (240)
                                 +++|.|++|+||.-    +.....+++....
T Consensus       260 -----------~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~  290 (343)
T 2pjd_A          260 -----------GRFDMIISNPPFHDGMQTSLDAAQTLIRGAV  290 (343)
T ss_dssp             -----------SCEEEEEECCCCCSSSHHHHHHHHHHHHHHG
T ss_pred             -----------CCeeEEEECCCcccCccCCHHHHHHHHHHHH
Confidence                       36899999999974    3444555565544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.18  E-value=1.8e-10  Score=96.32  Aligned_cols=114  Identities=10%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             CccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEE
Q psy17126         30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHL  105 (240)
Q Consensus        30 gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~  105 (240)
                      ...+.+++.....+...+...++.+|||||||+|..+..+++..  ..+|+++|+++.+++.++++....+  +++++++
T Consensus        48 ~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~  127 (229)
T 2avd_A           48 QGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL  127 (229)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE
Confidence            34477888877766655555678899999999999999999863  3699999999999999998876543  6899999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHH
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW  150 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~l  150 (240)
                      +|+.+.- +.+...    +  ..+++|.|+.+.|..-....+..+
T Consensus       128 ~d~~~~~-~~~~~~----~--~~~~~D~v~~d~~~~~~~~~l~~~  165 (229)
T 2avd_A          128 KPALETL-DELLAA----G--EAGTFDVAVVDADKENCSAYYERC  165 (229)
T ss_dssp             SCHHHHH-HHHHHT----T--CTTCEEEEEECSCSTTHHHHHHHH
T ss_pred             cCHHHHH-HHHHhc----C--CCCCccEEEECCCHHHHHHHHHHH
Confidence            9997641 111100    0  003689999998854333333333

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.17  E-value=9.7e-11  Score=115.42  Aligned_cols=116  Identities=11%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             HHHHHHHhCchhhhccCccccCCHHHHHHHHHH----cC--CCCCCEEEEECCchhHHHHHHHhhCC----CeEEEEeCC
Q psy17126         14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRN----AG--TITGNEVCEVGPGPGSITRSILNRRP----ARLVLIEKD   83 (240)
Q Consensus        14 ~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~----~~--~~~~~~VLEIG~GtG~lt~~La~~~~----~~V~avEid   83 (240)
                      +..++..|....++..|| |.+++.++..|++.    ++  ..++.+|+|.|||+|.+...++....    .+++|+|+|
T Consensus       279 L~ell~eya~k~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEID  357 (878)
T 3s1s_A          279 LAELIHDIATRGRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIE  357 (878)
T ss_dssp             HHHHHHHHHTTSCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSC
T ss_pred             HHHHHHHHHHHhCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECC
Confidence            334556666667788888 88999999999887    32  23578999999999999999987642    479999999


Q ss_pred             cchHHHH--HHHHhc--C--C-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         84 PRFTPCL--DMLAQA--S--P-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        84 ~~m~~~l--~~~~~~--~--~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +.++..+  +.++..  .  + ....+...|+...+...            ..++|+||+||||..
T Consensus       358 p~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~------------~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          358 TLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPED------------FANVSVVVMNPPYVS  411 (878)
T ss_dssp             GGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGG------------GTTEEEEEECCBCCS
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccc------------cCCCCEEEECCCccc
Confidence            9999998  444322  1  1 22456666666532111            146899999999954

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.17  E-value=9.1e-11  Score=101.29  Aligned_cols=90  Identities=9%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+++.+++.++++++..+  ++++++++|.++...+.           
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~-----------   88 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK-----------   88 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-----------
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc-----------
Confidence            4678999999999999999999763 589999999999999999987654  57999999998743221           


Q ss_pred             CCCCceEE-EecCCCCCCHHHHHHHHHhccc
Q psy17126        127 EGLPGIRI-IGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       127 ~~~~~~~V-vsNlPY~Iss~il~~ll~~~~~  156 (240)
                        .++|.| ++|    +...++.++++....
T Consensus        89 --~~~D~Iviag----mGg~lI~~IL~~~~~  113 (244)
T 3gnl_A           89 --DAIDTIVIAG----MGGTLIRTILEEGAA  113 (244)
T ss_dssp             --GCCCEEEEEE----ECHHHHHHHHHHTGG
T ss_pred             --ccccEEEEeC----CchHHHHHHHHHHHH
Confidence              135654 454    667778888876543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.17  E-value=4.1e-11  Score=109.46  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .|+.+......++..+. .++.+|||+|||+|.++..++..++.+|+|+|+++.+++.+++++...+  ++++++++|+.
T Consensus       199 g~f~~~~~~~~~~~~~~-~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~  277 (396)
T 2as0_A          199 GFFLDQRENRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF  277 (396)
T ss_dssp             CCCSTTHHHHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CccCCHHHHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHH
Confidence            35556555555555442 4788999999999999999998755699999999999999999876544  38999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ++.. .+..        ...++|.|+.|+|+...
T Consensus       278 ~~~~-~~~~--------~~~~fD~Vi~dpP~~~~  302 (396)
T 2as0_A          278 EEME-KLQK--------KGEKFDIVVLDPPAFVQ  302 (396)
T ss_dssp             HHHH-HHHH--------TTCCEEEEEECCCCSCS
T ss_pred             HHHH-HHHh--------hCCCCCEEEECCCCCCC
Confidence            7521 1110        01468999999998653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.17  E-value=1.8e-10  Score=94.46  Aligned_cols=98  Identities=9%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      +..++..+  .++ +|||||||+|.++..+++.+ .+|+|+|+++.+++.++++....+.+++++++|+.++++++    
T Consensus        21 l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----   92 (202)
T 2kw5_A           21 LVSVANQI--PQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA----   92 (202)
T ss_dssp             HHHHHHHS--CSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT----
T ss_pred             HHHHHHhC--CCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCc----
Confidence            44455544  356 99999999999999999985 69999999999999999876544458999999998875432    


Q ss_pred             hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                               +.+|.|+++..+ ...+....++....
T Consensus        93 ---------~~fD~v~~~~~~-~~~~~~~~~l~~~~  118 (202)
T 2kw5_A           93 ---------DAWEGIVSIFCH-LPSSLRQQLYPKVY  118 (202)
T ss_dssp             ---------TTCSEEEEECCC-CCHHHHHHHHHHHH
T ss_pred             ---------CCccEEEEEhhc-CCHHHHHHHHHHHH
Confidence                     368999998754 35455556665544

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.17  E-value=1e-10  Score=111.20  Aligned_cols=107  Identities=13%  Similarity=0.050  Sum_probs=83.6

Q ss_pred             hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--------------CCeEEEEeCCcchHHHHH
Q psy17126         26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--------------PARLVLIEKDPRFTPCLD   91 (240)
Q Consensus        26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--------------~~~V~avEid~~m~~~l~   91 (240)
                      ++..|| |.+++.+++.|++.+.+.++.+|+|.+||||.+...+.+..              ...++|+|+++.+...++
T Consensus       193 ~g~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~  271 (530)
T 3ufb_A          193 AGDSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ  271 (530)
T ss_dssp             SSSCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred             cCcCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence            345798 78999999999999999999999999999999987665421              146999999999999988


Q ss_pred             HHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         92 MLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        92 ~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      -++--.+ +...+.++|.+..+..+...         ..++|+||+||||+.
T Consensus       272 mNl~lhg~~~~~I~~~dtL~~~~~~~~~---------~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          272 MNLLLHGLEYPRIDPENSLRFPLREMGD---------KDRVDVILTNPPFGG  314 (530)
T ss_dssp             HHHHHHTCSCCEEECSCTTCSCGGGCCG---------GGCBSEEEECCCSSC
T ss_pred             HHHHhcCCccccccccccccCchhhhcc---------cccceEEEecCCCCc
Confidence            7643222 44678899998766543221         146999999999974

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.17  E-value=2.9e-10  Score=93.70  Aligned_cols=98  Identities=11%  Similarity=0.103  Sum_probs=74.3

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ...+++.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++  .. ..+++++++|+.++ +..   
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~--~~-~~~~~~~~~d~~~~-~~~---  105 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR--HG-LDNVEFRQQDLFDW-TPD---  105 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG--GC-CTTEEEEECCTTSC-CCS---
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh--cC-CCCeEEEecccccC-CCC---
Confidence            445566554 5677899999999999999999985 699999999999999986  21 26899999999876 221   


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                                +++|+|+++-- +++..+.+..++....
T Consensus       106 ----------~~~D~v~~~~~l~~~~~~~~~~~l~~~~  133 (218)
T 3ou2_A          106 ----------RQWDAVFFAHWLAHVPDDRFEAFWESVR  133 (218)
T ss_dssp             ----------SCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             ----------CceeEEEEechhhcCCHHHHHHHHHHHH
Confidence                      46898888765 4566654555555443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.16  E-value=9.3e-11  Score=97.23  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      ..+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++..   .+++++++|+.++++.      
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~------  104 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP------  104 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC------
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC------
Confidence            345555555678899999999999999999984 799999999999999987653   5799999999987643      


Q ss_pred             hcccccCCCCceEEEecCCC-CCCHHH
Q psy17126        121 RRRDWSEGLPGIRIIGNLPF-NVSTPL  146 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY-~Iss~i  146 (240)
                              +++|.|+++..+ ++..+.
T Consensus       105 --------~~fD~v~~~~~l~~~~~~~  123 (220)
T 3hnr_A          105 --------TSIDTIVSTYAFHHLTDDE  123 (220)
T ss_dssp             --------SCCSEEEEESCGGGSCHHH
T ss_pred             --------CCeEEEEECcchhcCChHH
Confidence                    257888887663 455554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.16  E-value=1.5e-10  Score=98.03  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=77.0

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      .+.+.+...+...+...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+  ++++++++|+.+
T Consensus        54 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (232)
T 3ntv_A           54 IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE  133 (232)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             CcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            3567777777776666678899999999999999999853 4799999999999999999876554  589999999987


Q ss_pred             cccc-ccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        111 FTMQ-NMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       111 ~~~~-~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .. + .+           .+++|.|+.+.+..-
T Consensus       134 ~~-~~~~-----------~~~fD~V~~~~~~~~  154 (232)
T 3ntv_A          134 QF-ENVN-----------DKVYDMIFIDAAKAQ  154 (232)
T ss_dssp             CH-HHHT-----------TSCEEEEEEETTSSS
T ss_pred             HH-Hhhc-----------cCCccEEEEcCcHHH
Confidence            52 2 11           146899999876543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.16  E-value=6.3e-11  Score=102.74  Aligned_cols=86  Identities=9%  Similarity=-0.004  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      .+.+++.|.+..+  .+.+|||||||+|.+|..|+.++ .+|+|||+|+.|++.+++     .++++++++|+.++++++
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~-----~~~v~~~~~~~e~~~~~~   97 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR-----HPRVTYAVAPAEDTGLPP   97 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC-----CTTEEEEECCTTCCCCCS
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh-----cCCceeehhhhhhhcccC
Confidence            3567777777654  45799999999999999999985 799999999999977642     368999999999987654


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                                   +.+|.|+++--++.
T Consensus        98 -------------~sfD~v~~~~~~h~  111 (257)
T 4hg2_A           98 -------------ASVDVAIAAQAMHW  111 (257)
T ss_dssp             -------------SCEEEEEECSCCTT
T ss_pred             -------------CcccEEEEeeehhH
Confidence                         46888888766543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.16  E-value=1.3e-10  Score=99.62  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcc------hHHHHHHHHhcCC--CCeEEEEcc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPR------FTPCLDMLAQASP--CPVHFHLGD  107 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~------m~~~l~~~~~~~~--~~v~vi~~D  107 (240)
                      .....+++.+.+.++.+|||||||+|.++..++++. + .+|+|+|+++.      |++.++++....+  ++++++++|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            345677888888899999999999999999999873 3 69999999997      9999998775543  579999998


Q ss_pred             -cccccccccchhhhcccccCCCCceEEEecCCC-CCCHH
Q psy17126        108 -VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTP  145 (240)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~  145 (240)
                       +....++  +.         .+++|.|+++.++ ++..+
T Consensus       110 ~~~~~~~~--~~---------~~~fD~v~~~~~l~~~~~~  138 (275)
T 3bkx_A          110 NLSDDLGP--IA---------DQHFDRVVLAHSLWYFASA  138 (275)
T ss_dssp             CTTTCCGG--GT---------TCCCSEEEEESCGGGSSCH
T ss_pred             hhhhccCC--CC---------CCCEEEEEEccchhhCCCH
Confidence             3322221  11         1468999998774 44433

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.16  E-value=8.8e-11  Score=99.25  Aligned_cols=91  Identities=11%  Similarity=0.066  Sum_probs=70.4

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ++.+|||||||+|.++..+++.+..+|+|+|+++.|++.++++.... ..+++++++|+.++++.+             +
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-------------~  145 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP-------------D  145 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS-------------S
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC-------------C
Confidence            57899999999999999999876569999999999999999876543 246899999998766432             3


Q ss_pred             CceEEEecCC-CCCCHHHHHHHHHhc
Q psy17126        130 PGIRIIGNLP-FNVSTPLIIKWIQAI  154 (240)
Q Consensus       130 ~~~~VvsNlP-Y~Iss~il~~ll~~~  154 (240)
                      ++|+|+++-. .++..+.+..++...
T Consensus       146 ~fD~v~~~~~l~~~~~~~~~~~l~~~  171 (241)
T 2ex4_A          146 SYDVIWIQWVIGHLTDQHLAEFLRRC  171 (241)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             CEEEEEEcchhhhCCHHHHHHHHHHH
Confidence            6898888754 446665555555543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.16  E-value=1.2e-10  Score=103.30  Aligned_cols=84  Identities=15%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHH-HhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSI-LNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~L-a~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      +++.-...+++.++++|||||||+|.+|..+ ++...++|+|||+|+.|++.++++.+..+ ++++++++|+.+++  + 
T Consensus       110 l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d-  186 (298)
T 3fpf_A          110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G-  186 (298)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G-
T ss_pred             HHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C-
Confidence            4444446678899999999999999888554 44335799999999999999999865433 78999999998753  1 


Q ss_pred             chhhhcccccCCCCceEEEec
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsN  137 (240)
                                  .+||+|+.+
T Consensus       187 ------------~~FDvV~~~  195 (298)
T 3fpf_A          187 ------------LEFDVLMVA  195 (298)
T ss_dssp             ------------CCCSEEEEC
T ss_pred             ------------CCcCEEEEC
Confidence                        357888764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.16  E-value=2.7e-11  Score=103.36  Aligned_cols=59  Identities=8%  Similarity=-0.016  Sum_probs=46.7

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--C-CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--R-PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~-~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      .++..+++.+...++.+|||+|||+|.++..++..  . ..+|+|+|+|+.+++.+++++..
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH
Confidence            34455555544446789999999999999999986  2 36899999999999999987654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.15  E-value=9.2e-11  Score=98.21  Aligned_cols=79  Identities=18%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..+++.. ..+|+|||+++.|++.+++++...+ .|++++++|+.+++  ..++.        
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~--~~~~~--------  106 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT--DVFEP--------  106 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH--HHCCT--------
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH--hhcCc--------
Confidence            357899999999999999999874 3699999999999999998876544 68999999998743  22211        


Q ss_pred             CCCceEEEecCC
Q psy17126        128 GLPGIRIIGNLP  139 (240)
Q Consensus       128 ~~~~~~VvsNlP  139 (240)
                       +.+|.|+.|.|
T Consensus       107 -~~~d~v~~~~~  117 (213)
T 2fca_A          107 -GEVKRVYLNFS  117 (213)
T ss_dssp             -TSCCEEEEESC
T ss_pred             -CCcCEEEEECC
Confidence             35788888865

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=4.3e-11  Score=103.47  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=70.9

Q ss_pred             ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcc
Q psy17126         28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD  107 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D  107 (240)
                      .|.++......+.+.+++.+...++.+|||||||+|.++..++.. ..+|+|+|+++.|++.++++.    .+++++++|
T Consensus        34 ~y~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d  108 (279)
T 3ccf_A           34 LYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY----PHLHFDVAD  108 (279)
T ss_dssp             -------CCSSSCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC----TTSCEEECC
T ss_pred             HHhhcchHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC----CCCEEEECC
Confidence            344433333445566777778888899999999999999999985 479999999999999998753    578999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.+++++              +++|.|+++..+
T Consensus       109 ~~~~~~~--------------~~fD~v~~~~~l  127 (279)
T 3ccf_A          109 ARNFRVD--------------KPLDAVFSNAML  127 (279)
T ss_dssp             TTTCCCS--------------SCEEEEEEESCG
T ss_pred             hhhCCcC--------------CCcCEEEEcchh
Confidence            9886642              357999888764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.15  E-value=1.3e-10  Score=100.80  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcC-C-CCeEEEEccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQAS-P-CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~-~-~~v~vi~~D~~~~~~~  114 (240)
                      .+..+++.+.+.++.+|||+|||+|.++..+++. . ..+|+|+|+++.+++.++++.... + ++++++++|+.+ .++
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~  176 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FIS  176 (275)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCC
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCc
Confidence            3456777788889999999999999999999987 2 379999999999999999987654 4 689999999987 222


Q ss_pred             ccchhhhcccccCCCCceEEEecCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +             +++|.|++++|.
T Consensus       177 ~-------------~~fD~Vi~~~~~  189 (275)
T 1yb2_A          177 D-------------QMYDAVIADIPD  189 (275)
T ss_dssp             S-------------CCEEEEEECCSC
T ss_pred             C-------------CCccEEEEcCcC
Confidence            1             368999999873

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.15  E-value=1.6e-10  Score=100.08  Aligned_cols=85  Identities=18%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~  116 (240)
                      .++.+++.+++.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....+  ++++++++|+.+++    
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----
Confidence            556777778888899999999999999999995434699999999999999998776443  58999999997654    


Q ss_pred             chhhhcccccCCCCceEEEecCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                  +++|.|+++-.
T Consensus       128 ------------~~fD~v~~~~~  138 (287)
T 1kpg_A          128 ------------EPVDRIVSIGA  138 (287)
T ss_dssp             ------------CCCSEEEEESC
T ss_pred             ------------CCeeEEEEeCc
Confidence                        14688887754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.15  E-value=2.2e-10  Score=100.75  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~  115 (240)
                      ..++.+++.+++.++.+|||||||+|.++..+++....+|+|+|+++.+++.++++....+  ++++++++|+.+++   
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence            3566777888888899999999999999999998733699999999999999998776543  57999999997753   


Q ss_pred             cchhhhcccccCCCCceEEEecCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                   +.+|.|+++-.+
T Consensus       154 -------------~~fD~v~~~~~l  165 (318)
T 2fk8_A          154 -------------EPVDRIVSIEAF  165 (318)
T ss_dssp             -------------CCCSEEEEESCG
T ss_pred             -------------CCcCEEEEeChH
Confidence                         247888887553

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.15  E-value=9.4e-11  Score=105.15  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||+|||+|.++.. ++ ++.+|+|+|+++.+++.++++++..+  ++++++++|+.++.               
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------------  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------------  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------
Confidence            4788999999999999999 87 46799999999999999999876554  57999999998753               


Q ss_pred             CCCceEEEecCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVS  143 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Is  143 (240)
                       ..+|.|+.|+|+...
T Consensus       257 -~~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          257 -VKGNRVIMNLPKFAH  271 (336)
T ss_dssp             -CCEEEEEECCTTTGG
T ss_pred             -CCCcEEEECCcHhHH
Confidence             157999999998653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.14  E-value=7e-11  Score=99.73  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ++.+|||||||+|.++..+++..+ ..|+|||+++.|++.+++++...+ .|++++++|+.++ ++..++         .
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~-l~~~~~---------~  103 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV-LHKMIP---------D  103 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH-HHHHSC---------T
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH-HHHHcC---------C
Confidence            578999999999999999998753 589999999999999998876554 6899999999874 111111         1


Q ss_pred             CCceEEEec--CCCC
Q psy17126        129 LPGIRIIGN--LPFN  141 (240)
Q Consensus       129 ~~~~~VvsN--lPY~  141 (240)
                      +.+|.|+.|  .||.
T Consensus       104 ~~~d~v~~~~~~p~~  118 (218)
T 3dxy_A          104 NSLRMVQLFFPDPWH  118 (218)
T ss_dssp             TCEEEEEEESCCCCC
T ss_pred             CChheEEEeCCCCcc
Confidence            468999999  5553

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.14  E-value=2.4e-10  Score=98.00  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=74.6

Q ss_pred             HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .++..|+.-   +.+++|++|||+|||+|.+|..++.. + .++|+|+|++++|++.+++++... +|+..+.+|+....
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-~ni~~V~~d~~~p~  139 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-RNIFPILGDARFPE  139 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-TTEEEEESCTTCGG
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-cCeeEEEEeccCcc
Confidence            355666543   46889999999999999999999986 3 379999999999999998876543 68999999987754


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                      .....          ...+|+|++.+++.-....
T Consensus       140 ~~~~~----------~~~vDvVf~d~~~~~~~~~  163 (233)
T 4df3_A          140 KYRHL----------VEGVDGLYADVAQPEQAAI  163 (233)
T ss_dssp             GGTTT----------CCCEEEEEECCCCTTHHHH
T ss_pred             ccccc----------cceEEEEEEeccCChhHHH
Confidence            22111          1357899999887654433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.14  E-value=3.1e-10  Score=95.15  Aligned_cols=84  Identities=11%  Similarity=-0.067  Sum_probs=62.9

Q ss_pred             cCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126         47 AGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        47 ~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      +.+.++.+|||+|||||.++..+++.. .++|+|+|+|+.|++.+.+.++.. .++.++.+|+........+        
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~--------  123 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGI--------  123 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTT--------
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhccc--------
Confidence            356788999999999999999999874 369999999999887666655433 5799999998764210000        


Q ss_pred             cCCCCceEEEecCCCC
Q psy17126        126 SEGLPGIRIIGNLPFN  141 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~  141 (240)
                        .+++|.|++|++..
T Consensus       124 --~~~fD~V~~~~~~~  137 (210)
T 1nt2_A          124 --VEKVDLIYQDIAQK  137 (210)
T ss_dssp             --CCCEEEEEECCCST
T ss_pred             --ccceeEEEEeccCh
Confidence              13689999997543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.14  E-value=2.2e-10  Score=106.14  Aligned_cols=104  Identities=12%  Similarity=0.128  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      |..++...+.+++.+. +.++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+++++...+-+++++++|+.++
T Consensus       271 ~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~  349 (425)
T 2jjq_A          271 FQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV  349 (425)
T ss_dssp             CCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC
T ss_pred             cccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc
Confidence            4445555555444331 457889999999999999999987 47999999999999999998764332299999999875


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ..               ..+|.||.|+|+.-..+.+.+.+.
T Consensus       350 ~~---------------~~fD~Vv~dPPr~g~~~~~~~~l~  375 (425)
T 2jjq_A          350 SV---------------KGFDTVIVDPPRAGLHPRLVKRLN  375 (425)
T ss_dssp             CC---------------TTCSEEEECCCTTCSCHHHHHHHH
T ss_pred             Cc---------------cCCCEEEEcCCccchHHHHHHHHH
Confidence            31               147999999998655553444443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.14  E-value=2.3e-10  Score=95.79  Aligned_cols=104  Identities=11%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCC--CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126         37 PRLTDKIVRNAGTI--TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        37 ~~i~~~iv~~~~~~--~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~  114 (240)
                      ..+.+.+.+.+...  ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....+.+++++++|+.+++++
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   99 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN   99 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc
Confidence            34455555554332  67899999999999999999985 6999999999999999987765444799999999886543


Q ss_pred             ccchhhhcccccCCCCceEEEecC-CC-CC-CHHHHHHHHHhcc
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNL-PF-NV-STPLIIKWIQAIS  155 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNl-PY-~I-ss~il~~ll~~~~  155 (240)
                                    +++|.|+++. .+ ++ +.+....++....
T Consensus       100 --------------~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~  129 (246)
T 1y8c_A          100 --------------RKFDLITCCLDSTNYIIDSDDLKKYFKAVS  129 (246)
T ss_dssp             --------------CCEEEEEECTTGGGGCCSHHHHHHHHHHHH
T ss_pred             --------------CCceEEEEcCccccccCCHHHHHHHHHHHH
Confidence                          2579999876 42 23 3345556665544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.13  E-value=1.7e-10  Score=97.08  Aligned_cols=99  Identities=12%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      +.+++.....+...+...++.+|||||||+|.++..+++.. ..+|+++|+++.+++.+++++...+  ++++++++|+.
T Consensus        36 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            56788888888887777788999999999999999999975 3799999999999999999876544  57999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      +.. +...         ..+++|.|+++.|..
T Consensus       116 ~~~-~~~~---------~~~~fD~I~~~~~~~  137 (233)
T 2gpy_A          116 QLG-EKLE---------LYPLFDVLFIDAAKG  137 (233)
T ss_dssp             GSH-HHHT---------TSCCEEEEEEEGGGS
T ss_pred             HHH-Hhcc---------cCCCccEEEECCCHH
Confidence            741 1110         013689999998764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.13  E-value=2.3e-10  Score=95.93  Aligned_cols=84  Identities=8%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+.+.+...++.+|||||||+|.++..+++.+..+|+|+|+++.|++.++++...  .+++++++|+.+++++.      
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~------  105 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQ------  105 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCT------
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCC------
Confidence            4556666678899999999999999999998534999999999999999875432  47999999998866432      


Q ss_pred             cccccCCCCceEEEecCCC
Q psy17126        122 RRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY  140 (240)
                             +++|.|+++..+
T Consensus       106 -------~~fD~v~~~~~l  117 (243)
T 3bkw_A          106 -------DSFDLAYSSLAL  117 (243)
T ss_dssp             -------TCEEEEEEESCG
T ss_pred             -------CCceEEEEeccc
Confidence                   368999988764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.13  E-value=2.1e-10  Score=106.04  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      |.++......++..+...++.+|||+|||+|..|..+++... ++|+|+|+++.+++.+++++...+-+++++++|+.++
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~  307 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  307 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc
Confidence            445555666677778888999999999999999999999753 6999999999999999998876665689999999876


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      +  ..+.         .+.+|.|++|+|+..+
T Consensus       308 ~--~~~~---------~~~fD~Vl~D~Pcsg~  328 (429)
T 1sqg_A          308 S--QWCG---------EQQFDRILLDAPCSAT  328 (429)
T ss_dssp             H--HHHT---------TCCEEEEEEECCCCCG
T ss_pred             h--hhcc---------cCCCCEEEEeCCCCcc
Confidence            4  1111         1468999999998754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.13  E-value=1.8e-10  Score=94.43  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      +.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++.    .+++++++|+.++++++             +++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~-------------~~f  103 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTH----PSVTFHHGTITDLSDSP-------------KRW  103 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT-CCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGGGGSC-------------CCE
T ss_pred             CCeEEEecCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC----CCCeEEeCcccccccCC-------------CCe
Confidence            7899999999999999999985 69999999999999998752    57999999998876432             468


Q ss_pred             eEEEecCCC
Q psy17126        132 IRIIGNLPF  140 (240)
Q Consensus       132 ~~VvsNlPY  140 (240)
                      |+|+++..+
T Consensus       104 D~v~~~~~l  112 (203)
T 3h2b_A          104 AGLLAWYSL  112 (203)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEehhhH
Confidence            999886653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.13  E-value=2.7e-10  Score=96.03  Aligned_cols=82  Identities=13%  Similarity=0.039  Sum_probs=65.1

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRR  122 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~  122 (240)
                      .+.+.++.+|||+|||+|.++..+++..  ..+|+|+|+++.|++.+.+++... .+++++++|+.+.. ++..      
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~------  144 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRML------  144 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGG------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhccc------
Confidence            4456788999999999999999999873  369999999999888777766543 68999999998743 1111      


Q ss_pred             ccccCCCCceEEEecCC
Q psy17126        123 RDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlP  139 (240)
                           .+.+|.|++|+|
T Consensus       145 -----~~~~D~V~~~~~  156 (233)
T 2ipx_A          145 -----IAMVDVIFADVA  156 (233)
T ss_dssp             -----CCCEEEEEECCC
T ss_pred             -----CCcEEEEEEcCC
Confidence                 146899999998

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.13  E-value=2.3e-10  Score=98.32  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      ...+.....+.++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.++++....+ .+++++.+|+.+++++.  
T Consensus        26 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--  103 (276)
T 3mgg_A           26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED--  103 (276)
T ss_dssp             HHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT--
T ss_pred             HHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC--
Confidence            3334444455788999999999999999999985 3799999999999999998776544 58999999999876432  


Q ss_pred             hhhhcccccCCCCceEEEecCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                 +++|.|+++..+
T Consensus       104 -----------~~fD~v~~~~~l  115 (276)
T 3mgg_A          104 -----------SSFDHIFVCFVL  115 (276)
T ss_dssp             -----------TCEEEEEEESCG
T ss_pred             -----------CCeeEEEEechh
Confidence                       468999988764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.13  E-value=2.4e-10  Score=95.75  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             HHHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .+...++.   .+.+.++.+|||+|||+|.++..+++. + .++|+|+|+++.|++.+++++... .+++++++|+.+..
T Consensus        57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~  135 (227)
T 1g8a_A           57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPE  135 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGG
T ss_pred             hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcc
Confidence            44566633   334678899999999999999999987 3 269999999999999998877654 78999999998743


Q ss_pred             ccccchhhhcccccCCCCceEEEecCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .....          .+.+|.|++++|
T Consensus       136 ~~~~~----------~~~~D~v~~~~~  152 (227)
T 1g8a_A          136 EYRAL----------VPKVDVIFEDVA  152 (227)
T ss_dssp             GGTTT----------CCCEEEEEECCC
T ss_pred             hhhcc----------cCCceEEEECCC
Confidence            11100          136899999988

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.12  E-value=4.3e-10  Score=95.04  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=70.7

Q ss_pred             CCHHH---HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEc
Q psy17126         35 FEPRL---TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLG  106 (240)
Q Consensus        35 ~d~~i---~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~  106 (240)
                      +++..   +..++...+.+++.+|||||||+|..|..+++..  .++|++||+|+.+++.++++++..+   ++++++++
T Consensus        37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence            45543   4444444444455699999999999999999863  3799999999999999999876543   47999999


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      |+.++- +.+.          .++||.|+.+.+.
T Consensus       117 da~~~l-~~~~----------~~~fD~V~~d~~~  139 (221)
T 3dr5_A          117 RPLDVM-SRLA----------NDSYQLVFGQVSP  139 (221)
T ss_dssp             CHHHHG-GGSC----------TTCEEEEEECCCT
T ss_pred             CHHHHH-HHhc----------CCCcCeEEEcCcH
Confidence            998742 1110          1468999988764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.12  E-value=1.7e-10  Score=96.60  Aligned_cols=104  Identities=11%  Similarity=-0.013  Sum_probs=75.6

Q ss_pred             CccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEE
Q psy17126         30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHL  105 (240)
Q Consensus        30 gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~  105 (240)
                      ...+.+.+.....+...+...++.+|||||||+|..|..+++..  ..+|++||+++.|++.+++++...+  +++++++
T Consensus        37 ~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  116 (221)
T 3u81_A           37 EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN  116 (221)
T ss_dssp             TCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEE
Confidence            34456777766666665555577899999999999999999852  3699999999999999999876543  5799999


Q ss_pred             cccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +|+.+. ++.+...     + +.+++|.|+.+.+.
T Consensus       117 ~d~~~~-l~~~~~~-----~-~~~~fD~V~~d~~~  144 (221)
T 3u81_A          117 GASQDL-IPQLKKK-----Y-DVDTLDMVFLDHWK  144 (221)
T ss_dssp             SCHHHH-GGGTTTT-----S-CCCCCSEEEECSCG
T ss_pred             CCHHHH-HHHHHHh-----c-CCCceEEEEEcCCc
Confidence            999763 1111100     0 11368999988653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.12  E-value=1.5e-10  Score=105.01  Aligned_cols=111  Identities=14%  Similarity=0.045  Sum_probs=77.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      .++..+++.+... +.+|||+|||+|.+|..++.. ..+|+|||+++.+++.++++++..+ ++++++++|+.++. +.+
T Consensus       201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~-~~~  277 (369)
T 3bt7_A          201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT-QAM  277 (369)
T ss_dssp             HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH-HHH
T ss_pred             HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH-HHH
Confidence            3555666666554 578999999999999999986 4799999999999999999886554 68999999997742 111


Q ss_pred             chh-----hhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        117 FSE-----DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       117 ~~~-----~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ...     .....+ +...+|+||.|+|+.-..+.+.+++.
T Consensus       278 ~~~~~~~~l~~~~~-~~~~fD~Vv~dPPr~g~~~~~~~~l~  317 (369)
T 3bt7_A          278 NGVREFNRLQGIDL-KSYQCETIFVDPPRSGLDSETEKMVQ  317 (369)
T ss_dssp             SSCCCCTTGGGSCG-GGCCEEEEEECCCTTCCCHHHHHHHT
T ss_pred             hhcccccccccccc-ccCCCCEEEECcCccccHHHHHHHHh
Confidence            000     000000 00268999999998644444455555

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.12  E-value=2.8e-10  Score=94.90  Aligned_cols=99  Identities=14%  Similarity=0.027  Sum_probs=72.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+++.....+...+...++.+|||||||+|..|..+++..  ..+|+++|+++.+++.+++++...+  ++++++++|+.
T Consensus        41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (223)
T 3duw_A           41 DVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL  120 (223)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3456655555444455678899999999999999999974  3699999999999999999876543  56999999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +. ++.+...       ..+++|.|+.+.+.
T Consensus       121 ~~-~~~~~~~-------~~~~fD~v~~d~~~  143 (223)
T 3duw_A          121 DS-LQQIENE-------KYEPFDFIFIDADK  143 (223)
T ss_dssp             HH-HHHHHHT-------TCCCCSEEEECSCG
T ss_pred             HH-HHHHHhc-------CCCCcCEEEEcCCc
Confidence            64 1221100       01358999988774

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.12  E-value=9.1e-11  Score=106.87  Aligned_cols=98  Identities=10%  Similarity=0.038  Sum_probs=73.5

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      |..+......++..+   ++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++...+ .+++++++|+.++
T Consensus       194 ~f~~~~~~~~~~~~~---~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~  269 (382)
T 1wxx_A          194 AYLDQRENRLYMERF---RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL  269 (382)
T ss_dssp             CCGGGHHHHHHGGGC---CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred             cccchHHHHHHHHhc---CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence            434444444444433   7789999999999999999998 5799999999999999999876554 4599999999875


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      . ..+..        .+.++|.|+.|+|+...
T Consensus       270 ~-~~~~~--------~~~~fD~Ii~dpP~~~~  292 (382)
T 1wxx_A          270 L-RRLEK--------EGERFDLVVLDPPAFAK  292 (382)
T ss_dssp             H-HHHHH--------TTCCEEEEEECCCCSCC
T ss_pred             H-HHHHh--------cCCCeeEEEECCCCCCC
Confidence            2 11110        01468999999998553

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.11  E-value=1.6e-10  Score=96.07  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=56.3

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh----cCC-CCeEEEEccccccccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ----ASP-CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~----~~~-~~v~vi~~D~~~~~~~  114 (240)
                      .++.+...++.+|||||||+|.++..+++.. ..+|+|||+++.|++.+.+.+.    ..+ ++++++++|+.++++.
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~   96 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL   96 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence            4444556788999999999999999999985 3799999999999886433221    122 5899999999997653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=7.2e-10  Score=89.25  Aligned_cols=93  Identities=11%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+++.+ +.++.+|||||||+|.++..++..+ .+|+|+|+++.+++.++++.    .+++++++|+.+++++.      
T Consensus        38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~------  105 (195)
T 3cgg_A           38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISE------  105 (195)
T ss_dssp             HHHHHH-SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCC------
T ss_pred             HHHHHh-ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCC------
Confidence            344444 4578899999999999999999984 79999999999999998754    45899999998865432      


Q ss_pred             cccccCCCCceEEEecCC--CCCCHHHHHHHHHh
Q psy17126        122 RRDWSEGLPGIRIIGNLP--FNVSTPLIIKWIQA  153 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlP--Y~Iss~il~~ll~~  153 (240)
                             +.+|.|+++.+  .+++.+....++..
T Consensus       106 -------~~~D~i~~~~~~~~~~~~~~~~~~l~~  132 (195)
T 3cgg_A          106 -------TDFDLIVSAGNVMGFLAEDGREPALAN  132 (195)
T ss_dssp             -------CCEEEEEECCCCGGGSCHHHHHHHHHH
T ss_pred             -------CceeEEEECCcHHhhcChHHHHHHHHH
Confidence                   36899999844  34444444455544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.10  E-value=2.3e-10  Score=112.15  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=81.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC---------------------------------------
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR---------------------------------------   73 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~---------------------------------------   73 (240)
                      ..+.+.++..|+..+++.++..|||++||||.+...++...                                       
T Consensus       172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            45778899999999999899999999999999998887642                                       


Q ss_pred             ----CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         74 ----PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        74 ----~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                          ..+|+|+|+|+.|++.++.|+...+  +.+++.++|+.++..+..           .+.+|+||+||||..
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-----------~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-----------KGPYGTVLSNPPYGE  315 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-----------TCCCCEEEECCCCCC
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-----------cCCCCEEEeCCCccc
Confidence                1479999999999999999887654  459999999988642210           025799999999975

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.10  E-value=7.4e-10  Score=92.85  Aligned_cols=100  Identities=12%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      ..+.+.+.+.+.  ++.+|||||||+|.++..+++.  .+|+|+|+++.|++.++++....+.+++++++|+.+++++  
T Consensus        21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--   94 (243)
T 3d2l_A           21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP--   94 (243)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS--
T ss_pred             HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC--
Confidence            456667777654  5689999999999999999887  6999999999999999988765556899999999886542  


Q ss_pred             chhhhcccccCCCCceEEEecC-C-CCC-CHHHHHHHHHhc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNL-P-FNV-STPLIIKWIQAI  154 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNl-P-Y~I-ss~il~~ll~~~  154 (240)
                                  +++|.|+++. . .++ +.+....++...
T Consensus        95 ------------~~fD~v~~~~~~~~~~~~~~~~~~~l~~~  123 (243)
T 3d2l_A           95 ------------EPVDAITILCDSLNYLQTEADVKQTFDSA  123 (243)
T ss_dssp             ------------SCEEEEEECTTGGGGCCSHHHHHHHHHHH
T ss_pred             ------------CCcCEEEEeCCchhhcCCHHHHHHHHHHH
Confidence                        2579998864 2 233 334444555443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.10  E-value=2.9e-10  Score=97.04  Aligned_cols=89  Identities=11%  Similarity=0.043  Sum_probs=67.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .++.+|+|||||+|.++..++..+ ..+|+|+|+++.+++.++++++..+  ++++++++|.++. ++.   .       
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~---~-------   82 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEE---T-------   82 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCG---G-------
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-ccc---C-------
Confidence            467899999999999999999976 3689999999999999999987655  5799999999652 111   0       


Q ss_pred             CCCCceE-EEecCCCCCCHHHHHHHHHhcc
Q psy17126        127 EGLPGIR-IIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       127 ~~~~~~~-VvsNlPY~Iss~il~~ll~~~~  155 (240)
                        .++|. ++++    +...++.++++...
T Consensus        83 --~~~D~IviaG----~Gg~~i~~Il~~~~  106 (225)
T 3kr9_A           83 --DQVSVITIAG----MGGRLIARILEEGL  106 (225)
T ss_dssp             --GCCCEEEEEE----ECHHHHHHHHHHTG
T ss_pred             --cCCCEEEEcC----CChHHHHHHHHHHH
Confidence              12454 4454    45666777776654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.10  E-value=5.8e-10  Score=96.27  Aligned_cols=95  Identities=16%  Similarity=0.071  Sum_probs=71.8

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      +.++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++....+  .+++++++|+.+.++..           
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------  130 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----------  130 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC-----------
Confidence            46788999999999999999988754599999999999999998776443  46899999999876521           


Q ss_pred             CCCCceEEEecCCCC---CCHHHHHHHHHhcc
Q psy17126        127 EGLPGIRIIGNLPFN---VSTPLIIKWIQAIS  155 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~---Iss~il~~ll~~~~  155 (240)
                       .+.+|+|+++...+   .+.+....++....
T Consensus       131 -~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~  161 (298)
T 1ri5_A          131 -GKEFDVISSQFSFHYAFSTSESLDIAQRNIA  161 (298)
T ss_dssp             -SSCEEEEEEESCGGGGGSSHHHHHHHHHHHH
T ss_pred             -CCCcCEEEECchhhhhcCCHHHHHHHHHHHH
Confidence             14689999885532   23444555555443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.10  E-value=4.4e-10  Score=97.24  Aligned_cols=86  Identities=15%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc-cccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT-MQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~-~~~~  116 (240)
                      +..+++.+... +.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++....+  ++++++++|+.+++ +.+ 
T Consensus        58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  134 (285)
T 4htf_A           58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE-  134 (285)
T ss_dssp             HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS-
T ss_pred             HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC-
Confidence            33455555543 6799999999999999999984 799999999999999998876543  67999999998865 211 


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                  +++|+|+++-.+
T Consensus       135 ------------~~fD~v~~~~~l  146 (285)
T 4htf_A          135 ------------TPVDLILFHAVL  146 (285)
T ss_dssp             ------------SCEEEEEEESCG
T ss_pred             ------------CCceEEEECchh
Confidence                        468999988664

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.10  E-value=1.3e-10  Score=98.61  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..++... ..+|+|||+++.|++.++++....+ .+++++++|+.++++....          
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~----------  138 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDV----------  138 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTT----------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccc----------
Confidence            467899999999999999999642 3699999999999999998776544 4799999999876532100          


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                      .+++|.|+++.
T Consensus       139 ~~~fD~V~~~~  149 (240)
T 1xdz_A          139 RESYDIVTARA  149 (240)
T ss_dssp             TTCEEEEEEEC
T ss_pred             cCCccEEEEec
Confidence            13689999876

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.09  E-value=1.5e-10  Score=98.44  Aligned_cols=89  Identities=16%  Similarity=0.009  Sum_probs=68.8

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+.+.+++.+. .+|.+|||||||+|..+..+++..+.+|++||+|+.|++.++++....+.+++++.+|+..+...  +
T Consensus        48 ~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--~  124 (236)
T 3orh_A           48 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT--L  124 (236)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG--S
T ss_pred             HHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc--c
Confidence            44555555554 57889999999999999999987557999999999999999998776667899999999765321  1


Q ss_pred             hhhhcccccCCCCceEEEecC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      +         .++||.|+...
T Consensus       125 ~---------~~~FD~i~~D~  136 (236)
T 3orh_A          125 P---------DGHFDGILYDT  136 (236)
T ss_dssp             C---------TTCEEEEEECC
T ss_pred             c---------ccCCceEEEee
Confidence            1         14678887554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.09  E-value=4.4e-10  Score=96.20  Aligned_cols=97  Identities=12%  Similarity=-0.003  Sum_probs=71.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+.+.....+...+...++.+|||||||+|..|..++...  ..+|+++|+++.+++.+++++...+  ++++++++|+.
T Consensus        46 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  125 (248)
T 3tfw_A           46 DVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPAL  125 (248)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3455554444444445578899999999999999999873  3699999999999999999876543  58999999997


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.- +.+.         +.+++|.|+.+.+.
T Consensus       126 ~~l-~~~~---------~~~~fD~V~~d~~~  146 (248)
T 3tfw_A          126 QSL-ESLG---------ECPAFDLIFIDADK  146 (248)
T ss_dssp             HHH-HTCC---------SCCCCSEEEECSCG
T ss_pred             HHH-HhcC---------CCCCeEEEEECCch
Confidence            631 1111         11368999988763

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.09  E-value=5e-10  Score=94.02  Aligned_cols=84  Identities=14%  Similarity=-0.002  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccc-ccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM-SFTMQNM  116 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~-~~~~~~~  116 (240)
                      .++..++.... .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++    .++++++++|+. .++++. 
T Consensus        36 ~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~-  108 (226)
T 3m33_A           36 LTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARAN----APHADVYEWNGKGELPAGL-  108 (226)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCCTTC-
T ss_pred             HHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHh----CCCceEEEcchhhccCCcC-
Confidence            45555554432 578899999999999999999984 7999999999999999876    357999999995 443320 


Q ss_pred             chhhhcccccCCCCceEEEecCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                 .+++|.|++|..
T Consensus       109 -----------~~~fD~v~~~~~  120 (226)
T 3m33_A          109 -----------GAPFGLIVSRRG  120 (226)
T ss_dssp             -----------CCCEEEEEEESC
T ss_pred             -----------CCCEEEEEeCCC
Confidence                       146899999843

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.09  E-value=2.7e-10  Score=95.71  Aligned_cols=86  Identities=14%  Similarity=0.018  Sum_probs=66.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~  116 (240)
                      .+..++......+ .+|||||||+|.++..++..+ .+|+|+|+++.+++.++++....  ..+++++++|+.+++..  
T Consensus        55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  130 (235)
T 3lcc_A           55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT--  130 (235)
T ss_dssp             HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS--
T ss_pred             HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC--
Confidence            3444555555444 599999999999999998864 69999999999999999877542  25799999999886522  


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                  .++|+|+++..+
T Consensus       131 ------------~~fD~v~~~~~l  142 (235)
T 3lcc_A          131 ------------ELFDLIFDYVFF  142 (235)
T ss_dssp             ------------SCEEEEEEESST
T ss_pred             ------------CCeeEEEEChhh
Confidence                        357999887654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.09  E-value=2.4e-10  Score=93.98  Aligned_cols=86  Identities=19%  Similarity=0.201  Sum_probs=67.7

Q ss_pred             HHHHHHHHcCCC---CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccc
Q psy17126         39 LTDKIVRNAGTI---TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTM  113 (240)
Q Consensus        39 i~~~iv~~~~~~---~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~  113 (240)
                      ++..+++.+...   ++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++....+ .+++++++|+.+...
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  129 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS  129 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc
Confidence            455666655432   47899999999999999999874 3699999999999999998876554 459999999987541


Q ss_pred             cccchhhhcccccCCCCceEEEecC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      .              +++|.|++|-
T Consensus       130 ~--------------~~~D~i~~~~  140 (207)
T 1jsx_A          130 E--------------PPFDGVISRA  140 (207)
T ss_dssp             C--------------SCEEEEECSC
T ss_pred             c--------------CCcCEEEEec
Confidence            1              3589999874

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.08  E-value=6e-10  Score=92.00  Aligned_cols=96  Identities=10%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      ...+..++..  +.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.++++.     +++++.+|+.+++. . 
T Consensus        31 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~~-~-  100 (211)
T 3e23_A           31 SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLDA-I-  100 (211)
T ss_dssp             CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCCC-C-
T ss_pred             hHHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCCC-C-
Confidence            3444455544  3468899999999999999999984 69999999999999998765     46788999988661 1 


Q ss_pred             chhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                                  +++|.|+++..+ ++..+....++...
T Consensus       101 ------------~~fD~v~~~~~l~~~~~~~~~~~l~~~  127 (211)
T 3e23_A          101 ------------DAYDAVWAHACLLHVPRDELADVLKLI  127 (211)
T ss_dssp             ------------SCEEEEEECSCGGGSCHHHHHHHHHHH
T ss_pred             ------------CcEEEEEecCchhhcCHHHHHHHHHHH
Confidence                        468999998764 44434444555443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.08  E-value=1.7e-10  Score=99.30  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .++.+|||||||+|.++..++... ..+|++||+++.+++.+++++...+ .+++++++|+.++......          
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~----------  148 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGH----------  148 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTT----------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccccc----------
Confidence            467899999999999999999874 4799999999999999999876554 5699999999886532111          


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                      .++||.|+++-
T Consensus       149 ~~~fD~I~s~a  159 (249)
T 3g89_A          149 REAYARAVARA  159 (249)
T ss_dssp             TTCEEEEEEES
T ss_pred             CCCceEEEECC
Confidence            13689999974

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.08  E-value=3.5e-10  Score=98.01  Aligned_cols=90  Identities=7%  Similarity=-0.041  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-----CCeEEEEcccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-----CPVHFHLGDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-----~~v~vi~~D~~~~  111 (240)
                      ..+.+.+.+.+...++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.++++.....     .++.++.+|+.++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  121 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  121 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence            4556666666666678899999999999999999985 599999999999999987652211     5688999999876


Q ss_pred             cccccchhhhcccccCCCCceEEEec
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      +- +++.         .+++|+|+++
T Consensus       122 ~~-~~~~---------~~~fD~V~~~  137 (293)
T 3thr_A          122 DK-DVPA---------GDGFDAVICL  137 (293)
T ss_dssp             HH-HSCC---------TTCEEEEEEC
T ss_pred             cc-cccc---------CCCeEEEEEc
Confidence            41 1111         1468999985

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.07  E-value=6.3e-10  Score=93.37  Aligned_cols=85  Identities=16%  Similarity=0.083  Sum_probs=68.2

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      .++..+.+.+  .++.+|||||||+|.++..++..+ .+|+|+|+++.+++.++++.  ...+++++++|+.++++++  
T Consensus        42 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~~--  114 (242)
T 3l8d_A           42 TIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPFEN--  114 (242)
T ss_dssp             THHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSSCT--
T ss_pred             HHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCCCC--
Confidence            4555565554  367899999999999999999985 69999999999999998754  2378999999999876432  


Q ss_pred             hhhhcccccCCCCceEEEecCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                 +++|.|+++-.+
T Consensus       115 -----------~~fD~v~~~~~l  126 (242)
T 3l8d_A          115 -----------EQFEAIMAINSL  126 (242)
T ss_dssp             -----------TCEEEEEEESCT
T ss_pred             -----------CCccEEEEcChH
Confidence                       468988887664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=4e-10  Score=93.96  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=73.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      +.+++.....+...+...++.+|||||||+|..|..++...  ..+|+++|+++.+++.+++++...+  ++++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            45566655555444444567899999999999999999873  3799999999999999999876544  5699999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      .+.- +.+...     + ..+++|.|+.+.+..
T Consensus       126 ~~~~-~~~~~~-----~-~~~~fD~v~~~~~~~  151 (225)
T 3tr6_A          126 KDTL-AELIHA-----G-QAWQYDLIYIDADKA  151 (225)
T ss_dssp             HHHH-HHHHTT-----T-CTTCEEEEEECSCGG
T ss_pred             HHHH-HHhhhc-----c-CCCCccEEEECCCHH
Confidence            7641 111100     0 013689999888743

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.07  E-value=2.4e-10  Score=107.41  Aligned_cols=90  Identities=18%  Similarity=0.032  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCC--CCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccc
Q psy17126         40 TDKIVRNAGTI--TGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~--~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~  114 (240)
                      ...++..+.+.  ++.+|||+|||+|..|..+++..  .++|+|+|+++.+++.++++++..+ .+++++++|+.+++..
T Consensus       104 s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~  183 (479)
T 2frx_A          104 SMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA  183 (479)
T ss_dssp             HHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH
T ss_pred             HHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh
Confidence            33344556776  89999999999999999999874  3699999999999999999887654 5799999999875421


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                        .          .+.||+|++|+|++
T Consensus       184 --~----------~~~fD~Il~D~PcS  198 (479)
T 2frx_A          184 --V----------PEMFDAILLDAPCS  198 (479)
T ss_dssp             --S----------TTCEEEEEEECCCC
T ss_pred             --c----------cccCCEEEECCCcC
Confidence              1          13689999999985

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.07  E-value=2.4e-10  Score=104.92  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      +..+......++... ..++.+|||+|||||.+|..++..+ .+|+|||+|+.+++.++++++..+-..+++++|+.++.
T Consensus       197 ~f~dqr~~r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~g-a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l  274 (393)
T 4dmg_A          197 YYLDQRENRRLFEAM-VRPGERVLDVYSYVGGFALRAARKG-AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTL  274 (393)
T ss_dssp             SCGGGHHHHHHHHTT-CCTTCEEEEESCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHH
T ss_pred             cCCCHHHHHHHHHHH-hcCCCeEEEcccchhHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHH
Confidence            444455555555443 2458999999999999999999986 46999999999999999987654433467789987642


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                       ...          . +.+|.|+.|+|+..
T Consensus       275 -~~~----------~-~~fD~Ii~dpP~f~  292 (393)
T 4dmg_A          275 -RGL----------E-GPFHHVLLDPPTLV  292 (393)
T ss_dssp             -HTC----------C-CCEEEEEECCCCCC
T ss_pred             -HHh----------c-CCCCEEEECCCcCC
Confidence             111          1 24899999999744

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.07  E-value=3.9e-10  Score=100.33  Aligned_cols=95  Identities=11%  Similarity=0.085  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      ...++..+.+.++++|||+|||+|..|..++...  .++|+|+|+++.+++.++++++..+ .+++++++|+.+++... 
T Consensus        91 s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-  169 (309)
T 2b9e_A           91 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-  169 (309)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-
Confidence            3444556788899999999999999999999852  3799999999999999999987765 68999999998865321 


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                       ..     +   ..+|.|+.++|+.-+.
T Consensus       170 -~~-----~---~~fD~Vl~D~PcSg~G  188 (309)
T 2b9e_A          170 -PR-----Y---HEVHYILLDPSCSGSG  188 (309)
T ss_dssp             -GG-----G---TTEEEEEECCCCCC--
T ss_pred             -cc-----c---CCCCEEEEcCCcCCCC
Confidence             00     1   3589999999996443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.07  E-value=3.4e-10  Score=111.00  Aligned_cols=97  Identities=8%  Similarity=0.056  Sum_probs=73.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~  109 (240)
                      +..|......++...  .++.+|||+|||||.++..++..++.+|++||+|+.+++.++++++..+   .+++++++|+.
T Consensus       523 ~f~d~r~~r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~  600 (703)
T 3v97_A          523 LFLDHRIARRMLGQM--SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCL  600 (703)
T ss_dssp             CCGGGHHHHHHHHHH--CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHH
T ss_pred             CcccHHHHHHHHHHh--cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            334444444444443  3688999999999999999998766689999999999999999876543   47999999998


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ++- +..           .+++|.||.|+||...
T Consensus       601 ~~l-~~~-----------~~~fD~Ii~DPP~f~~  622 (703)
T 3v97_A          601 AWL-REA-----------NEQFDLIFIDPPTFSN  622 (703)
T ss_dssp             HHH-HHC-----------CCCEEEEEECCCSBC-
T ss_pred             HHH-Hhc-----------CCCccEEEECCccccC
Confidence            731 110           1468999999998653

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.06  E-value=8.8e-11  Score=101.95  Aligned_cols=90  Identities=9%  Similarity=0.071  Sum_probs=66.3

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc-------chHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP-------RFTPCLDMLAQASP--CPVHFHLGDVMSFTM  113 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~-------~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~  113 (240)
                      +.+.+...++.+|||+|||+|.++..++..+ .+|+|+|+++       .+++.++++.+..+  ++++++++|+.++- 
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l-  152 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM-  152 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH-
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH-
Confidence            4444455567899999999999999999985 6999999999       88888887654322  46999999998741 


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +.+...        +.++|+|+.|+||..
T Consensus       153 ~~~~~~--------~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          153 PALVKT--------QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHH--------HCCCSEEEECCCC--
T ss_pred             Hhhhcc--------CCCccEEEECCCCCC
Confidence            111100        025899999999854

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.06  E-value=3.5e-10  Score=105.72  Aligned_cols=96  Identities=16%  Similarity=0.055  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ++......++..+.+.++.+|||+|||+|..|..++...  .++|+|+|+|+.+++.++++++..+ .++.++++|+.++
T Consensus        89 vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l  168 (456)
T 3m4x_A           89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAEL  168 (456)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHH
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence            333344455666788899999999999999999999862  3699999999999999999887655 6799999999875


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .  ..++          +.+|+|+.|+|+.-
T Consensus       169 ~--~~~~----------~~FD~Il~DaPCSg  187 (456)
T 3m4x_A          169 V--PHFS----------GFFDRIVVDAPCSG  187 (456)
T ss_dssp             H--HHHT----------TCEEEEEEECCCCC
T ss_pred             h--hhcc----------ccCCEEEECCCCCC
Confidence            3  1111          36899999999754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.06  E-value=5.5e-10  Score=92.88  Aligned_cols=81  Identities=12%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC------CCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP------CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~------~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .++.+|||||||+|.++..++..+ .+|+|+|+++.+++.++++....+      .+++++.+|+.+++++.        
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------   99 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD--------   99 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT--------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC--------
Confidence            478899999999999999999984 699999999999999998765432      26899999998876432        


Q ss_pred             cccCCCCceEEEecCCC-CCCH
Q psy17126        124 DWSEGLPGIRIIGNLPF-NVST  144 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY-~Iss  144 (240)
                           +++|.|+++..+ ++..
T Consensus       100 -----~~~D~v~~~~~l~~~~~  116 (235)
T 3sm3_A          100 -----SSFDFAVMQAFLTSVPD  116 (235)
T ss_dssp             -----TCEEEEEEESCGGGCCC
T ss_pred             -----CceeEEEEcchhhcCCC
Confidence                 468999987663 3443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.06  E-value=5.2e-10  Score=94.79  Aligned_cols=80  Identities=11%  Similarity=0.032  Sum_probs=61.2

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCC-cchHHHH---HHHHhcCC-CCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKD-PRFTPCL---DMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid-~~m~~~l---~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .++.+|||||||+|.++..++++. ..+|+|||+| +.|++.+   ++++...+ .+++++++|+.+++.. .+      
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~-~~------   95 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE-LK------   95 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG-GT------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh-cc------
Confidence            578899999999999999999643 3689999999 7787776   65544433 6899999999987421 11      


Q ss_pred             cccCCCCceEEEecCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~  141 (240)
                           ..++.|..|+|+.
T Consensus        96 -----d~v~~i~~~~~~~  108 (225)
T 3p2e_A           96 -----NIADSISILFPWG  108 (225)
T ss_dssp             -----TCEEEEEEESCCH
T ss_pred             -----CeEEEEEEeCCCc
Confidence                 2467888998863

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.04  E-value=5.4e-10  Score=95.19  Aligned_cols=81  Identities=16%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC--------C-CCeEEEEcccccccccccchh
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS--------P-CPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~--------~-~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      .++.+|||||||+|.++..++..++ ..|+|||+++.+++.+++++...        + .|++++++|+.+. ++..++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHhccc
Confidence            4678999999999999999999864 58999999999999998875432        2 6899999999863 2222221


Q ss_pred             hhcccccCCCCceEEEecCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY  140 (240)
                               +.++.|+.+.|.
T Consensus       127 ---------~~~d~v~~~~p~  138 (246)
T 2vdv_E          127 ---------GQLSKMFFCFPD  138 (246)
T ss_dssp             ---------TCEEEEEEESCC
T ss_pred             ---------cccCEEEEECCC
Confidence                     457778777653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.04  E-value=3.1e-10  Score=94.98  Aligned_cols=82  Identities=10%  Similarity=-0.009  Sum_probs=63.9

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .+.+++.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++..   .+++++++|+.++. .+   
T Consensus        30 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~---~~v~~~~~d~~~~~-~~---  101 (250)
T 2p7i_A           30 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ-LP---  101 (250)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC-CS---
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhhh---CCeEEEEccHHHcC-cC---
Confidence            344555543 3467899999999999999999885 599999999999999987653   27999999998762 11   


Q ss_pred             hhhcccccCCCCceEEEecCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                +++|.|+++--
T Consensus       102 ----------~~fD~v~~~~~  112 (250)
T 2p7i_A          102 ----------RRYDNIVLTHV  112 (250)
T ss_dssp             ----------SCEEEEEEESC
T ss_pred             ----------CcccEEEEhhH
Confidence                      36788888654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.03  E-value=5.8e-10  Score=95.13  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=60.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhc------C-CCCeEEEEcccccccccccchhhh
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA------S-PCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~------~-~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .++.+|||||||+|.++..++...+ ..|+|||+++.|++.+++++..      . ..|++++++|+.+. ++..++.  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~--  121 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYK--  121 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCT--
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCC--
Confidence            4567999999999999999998753 6899999999999999876532      1 26899999999862 1221211  


Q ss_pred             cccccCCCCceEEEecCC
Q psy17126        122 RRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlP  139 (240)
                             +.+|.|+.+.|
T Consensus       122 -------~~~D~v~~~~~  132 (235)
T 3ckk_A          122 -------GQLTKMFFLFP  132 (235)
T ss_dssp             -------TCEEEEEEESC
T ss_pred             -------cCeeEEEEeCC
Confidence                   46788888865

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.03  E-value=8.6e-10  Score=102.63  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=75.6

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~  114 (240)
                      .....++..+.+.++.+|||+|||+|..|..++... . ++|+|+|+++.+++.+++++...+ .+++++++|+.+++. 
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~-  324 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE-  324 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS-
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch-
Confidence            334445566788899999999999999999999864 2 699999999999999999887655 589999999987641 


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      . +.         .+.+|.|+.|+|+.-+
T Consensus       325 ~-~~---------~~~fD~Vl~D~Pcsg~  343 (450)
T 2yxl_A          325 I-IG---------EEVADKVLLDAPCTSS  343 (450)
T ss_dssp             S-SC---------SSCEEEEEEECCCCCG
T ss_pred             h-hc---------cCCCCEEEEcCCCCCC
Confidence            1 11         1368999999998644

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.03  E-value=2.4e-10  Score=105.44  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--C-CCeEEEEcccccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--P-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      ++.+|||+|||+|..+..++..+ .+|+|||+|+.|++.++++++..  + .+++++++|+.++ ++.. ..        
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~-L~~~-~~--------  161 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY-LPLI-KT--------  161 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS-HHHH-HH--------
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHh-hhhc-cC--------
Confidence            48999999999999999999874 79999999999999999988754  3 6799999999874 1111 11        


Q ss_pred             CCCceEEEecCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVS  143 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Is  143 (240)
                       .++|.|+.||||.-.
T Consensus       162 -~~fDvV~lDPPrr~~  176 (410)
T 3ll7_A          162 -FHPDYIYVDPARRSG  176 (410)
T ss_dssp             -HCCSEEEECCEEC--
T ss_pred             -CCceEEEECCCCcCC
Confidence             258999999999763

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.02  E-value=2.6e-09  Score=91.55  Aligned_cols=102  Identities=8%  Similarity=-0.007  Sum_probs=72.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ..+.+.....+...+...++.+|||||||+|..|..+++..  .++|+++|+++.+++.++++....+  ++++++++|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            44566655544444444567899999999999999999873  3799999999999999999876543  5799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .+. ++.+...    ++. .++||.|+.+.+.
T Consensus       141 ~~~-l~~l~~~----~~~-~~~fD~V~~d~~~  166 (247)
T 1sui_A          141 LPV-LDEMIKD----EKN-HGSYDFIFVDADK  166 (247)
T ss_dssp             HHH-HHHHHHS----GGG-TTCBSEEEECSCS
T ss_pred             HHH-HHHHHhc----cCC-CCCEEEEEEcCch
Confidence            764 1111100    000 1468999988653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.02  E-value=2.2e-10  Score=107.36  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      ++......++..+.+.++.+|||+|||+|..|..+++..  .++|+|+|+|+.+++.++++++..+-.++++++|+.++.
T Consensus        85 vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~  164 (464)
T 3m6w_A           85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA  164 (464)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH
T ss_pred             EECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh
Confidence            333334455666788899999999999999999999863  269999999999999999988765523999999998753


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                        ...          .+.+|+|+.|+|+.
T Consensus       165 --~~~----------~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          165 --EAF----------GTYFHRVLLDAPCS  181 (464)
T ss_dssp             --HHH----------CSCEEEEEEECCCC
T ss_pred             --hhc----------cccCCEEEECCCcC
Confidence              111          13689999999985

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.02  E-value=2.8e-10  Score=97.40  Aligned_cols=101  Identities=10%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      +.+++.....+...+...++.+|||||||+|..|..+++..  .++|++||+++.+++.++++++..+  ++++++++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            45677666665555555567899999999999999999853  3699999999999999998876544  5899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .++. +.+...      ...+++|.|+.+.+.
T Consensus       122 ~~~l-~~~~~~------~~~~~fD~V~~d~~~  146 (242)
T 3r3h_A          122 LDTL-HSLLNE------GGEHQFDFIFIDADK  146 (242)
T ss_dssp             HHHH-HHHHHH------HCSSCEEEEEEESCG
T ss_pred             HHHH-HHHhhc------cCCCCEeEEEEcCCh
Confidence            7642 211100      001468999998763

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.02  E-value=1.3e-09  Score=86.01  Aligned_cols=88  Identities=19%  Similarity=0.307  Sum_probs=63.1

Q ss_pred             HHHHHHcC-CCCCCEEEEECCchhHHHHHHHhh-CC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAG-TITGNEVCEVGPGPGSITRSILNR-RP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~-~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+++... +.++.+|||+|||+|.++..+++. ++ .+|+|+|+++ |+..         .+++++++|+.+.+..+..
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~   80 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhh
Confidence            34555554 567889999999999999999987 33 7999999999 7532         5799999999886511100


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ..    .+ ..+++|.|++|.|++..
T Consensus        81 ~~----~~-~~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           81 LE----RV-GDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             HH----HH-TTCCEEEEEECCCCCCC
T ss_pred             hc----cC-CCCceeEEEECCCcccc
Confidence            00    00 11468999999997643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=6.4e-10  Score=93.90  Aligned_cols=84  Identities=8%  Similarity=0.028  Sum_probs=65.2

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      +.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++..  ..+++++++|+.+.+....++.        .
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~-~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~--------~  122 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHS--------E  122 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHS-SCEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHH--------H
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhC-CCEEEEECCHHHHHHHHHhCc--ccCceEEECccccccccccccc--------c
Confidence            4678899999999999999999986 499999999999999988652  3589999999998765432211        0


Q ss_pred             CCceEEEecCC-CCCC
Q psy17126        129 LPGIRIIGNLP-FNVS  143 (240)
Q Consensus       129 ~~~~~VvsNlP-Y~Is  143 (240)
                      ..+|+|+++.. +.++
T Consensus       123 ~~~d~v~~~~~~~~~~  138 (245)
T 3ggd_A          123 IGDANIYMRTGFHHIP  138 (245)
T ss_dssp             HCSCEEEEESSSTTSC
T ss_pred             cCccEEEEcchhhcCC
Confidence            23678887755 4454

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.02  E-value=1.6e-09  Score=92.48  Aligned_cols=86  Identities=10%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++.    .+++++++|+.++++.              +
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~--------------~  109 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRN----PDAVLHHGDMRDFSLG--------------R  109 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTCCCS--------------C
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhC----CCCEEEECChHHCCcc--------------C
Confidence            356899999999999999999985 69999999999999998754    3799999999987652              3


Q ss_pred             CceEEEecC-CC-CCCH-HHHHHHHHhc
Q psy17126        130 PGIRIIGNL-PF-NVST-PLIIKWIQAI  154 (240)
Q Consensus       130 ~~~~VvsNl-PY-~Iss-~il~~ll~~~  154 (240)
                      ++|+|+++. .+ ++.+ ..+..++...
T Consensus       110 ~fD~v~~~~~~l~~~~~~~~~~~~l~~~  137 (263)
T 3pfg_A          110 RFSAVTCMFSSIGHLAGQAELDAALERF  137 (263)
T ss_dssp             CEEEEEECTTGGGGSCHHHHHHHHHHHH
T ss_pred             CcCEEEEcCchhhhcCCHHHHHHHHHHH
Confidence            689999875 43 3543 3344444443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.01  E-value=4.6e-10  Score=98.47  Aligned_cols=80  Identities=19%  Similarity=0.011  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEECCchhHHHHHHH-h-hCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSIL-N-RRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La-~-~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .+.++.+|||||||+|.++..++ . ....+|+|+|+++.+++.++++....+  ++++++++|+.+++++         
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR---------  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC---------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc---------
Confidence            35678999999999999999985 2 224699999999999999999876543  4599999999987643         


Q ss_pred             cccCCCCceEEEecCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~  141 (240)
                           +.+|.|++|.++.
T Consensus       186 -----~~fD~v~~~~~~~  198 (305)
T 3ocj_A          186 -----EGYDLLTSNGLNI  198 (305)
T ss_dssp             -----SCEEEEECCSSGG
T ss_pred             -----CCeEEEEECChhh
Confidence                 2589999988754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.00  E-value=5.6e-10  Score=92.21  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      ...+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++     .++.++.+|+.++.....   
T Consensus        41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~---  111 (227)
T 3e8s_A           41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKV---  111 (227)
T ss_dssp             HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCS---
T ss_pred             cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhccccc---
Confidence            3456666655667999999999999999999984 6999999999999999864     467888999877622111   


Q ss_pred             hhcccccCCCCceEEEecCCCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                            ....++|.|+++..+..
T Consensus       112 ------~~~~~fD~v~~~~~l~~  128 (227)
T 3e8s_A          112 ------PVGKDYDLICANFALLH  128 (227)
T ss_dssp             ------CCCCCEEEEEEESCCCS
T ss_pred             ------ccCCCccEEEECchhhh
Confidence                  11235899999987663

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.00  E-value=2.8e-10  Score=90.75  Aligned_cols=79  Identities=13%  Similarity=-0.021  Sum_probs=63.7

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+++.+.+.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.++++    .++++++++|   .++++      
T Consensus         8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~~~~------   73 (170)
T 3i9f_A            8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK----FDSVITLSDP---KEIPD------   73 (170)
T ss_dssp             TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH----CTTSEEESSG---GGSCT------
T ss_pred             HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CCCCC------
Confidence            34555667788999999999999999999986 4999999999999999875    3689999999   22221      


Q ss_pred             cccccCCCCceEEEecCCCC
Q psy17126        122 RRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY~  141 (240)
                             +.+|.|+++-.+.
T Consensus        74 -------~~~D~v~~~~~l~   86 (170)
T 3i9f_A           74 -------NSVDFILFANSFH   86 (170)
T ss_dssp             -------TCEEEEEEESCST
T ss_pred             -------CceEEEEEccchh
Confidence                   4689999887643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.99  E-value=1.2e-09  Score=92.36  Aligned_cols=78  Identities=9%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ..+.+.....+...+...++.+|||||||+|.++..+++..  ..+|+++|+++.+++.++++....+  ++++++++|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            46778887777777666678899999999999999999874  3699999999999999998876543  4599999998


Q ss_pred             cc
Q psy17126        109 MS  110 (240)
Q Consensus       109 ~~  110 (240)
                      .+
T Consensus       122 ~~  123 (239)
T 2hnk_A          122 LE  123 (239)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.99  E-value=8.7e-10  Score=100.23  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC---------CCCeEEEEcccccccccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS---------PCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~---------~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..++.+|||||||+|.++..+++..  ..+|+|+|+++.|++.+++++...         ..+++++++|+.++..... 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-
Confidence            4578899999999999999999863  359999999999999999875421         1689999999988621100 


Q ss_pred             hhhhcccccCCCCceEEEecCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                           ..+. .+++|+|++|..++.
T Consensus       160 -----~~~~-~~~fD~V~~~~~l~~  178 (383)
T 4fsd_A          160 -----EGVP-DSSVDIVISNCVCNL  178 (383)
T ss_dssp             -----CCCC-TTCEEEEEEESCGGG
T ss_pred             -----CCCC-CCCEEEEEEccchhc
Confidence                 0000 147899999988654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.99  E-value=1.2e-09  Score=90.48  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      +++.....+...+...++.+|||||||+|..|..+++..  ..+|+++|+|+.+++.++++....+  ++++++++|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            445444333322333456899999999999999999873  3699999999999999998765433  579999999976


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .- +..           .+ +|.|+.+.+.
T Consensus       120 ~~-~~~-----------~~-fD~v~~~~~~  136 (210)
T 3c3p_A          120 IA-AGQ-----------RD-IDILFMDCDV  136 (210)
T ss_dssp             HH-TTC-----------CS-EEEEEEETTT
T ss_pred             Hh-ccC-----------CC-CCEEEEcCCh
Confidence            31 111           13 7999988653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.1e-09  Score=95.86  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=44.1

Q ss_pred             HHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         41 DKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        41 ~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      +.+++.+..  .++.+|||||||+|.++..++.+. +.+|+|||+|+.|++.++++..
T Consensus        34 ~~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           34 DGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             CGGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred             hHHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence            334444433  267899999999999999999984 4799999999999999988643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.98  E-value=2.4e-09  Score=93.32  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeC-CcchHHHHHHHH-----hcCC------CCeEEEEc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK-DPRFTPCLDMLA-----QASP------CPVHFHLG  106 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEi-d~~m~~~l~~~~-----~~~~------~~v~vi~~  106 (240)
                      +++.+.+.....++.+|||||||+|.++..+++.+..+|+|+|+ |+.+++.+++++     ...+      ++++++..
T Consensus        67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~  146 (281)
T 3bzb_A           67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY  146 (281)
T ss_dssp             HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred             HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence            44555554445678899999999999999999876459999999 899999999987     3222      36888877


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEe-cCCCCCCH
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVST  144 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss  144 (240)
                      |+.+.. ..+...     + ..+++|+||+ +++|+...
T Consensus       147 ~~~~~~-~~~~~~-----~-~~~~fD~Ii~~dvl~~~~~  178 (281)
T 3bzb_A          147 RWGDSP-DSLQRC-----T-GLQRFQVVLLADLLSFHQA  178 (281)
T ss_dssp             CTTSCT-HHHHHH-----H-SCSSBSEEEEESCCSCGGG
T ss_pred             cCCCcc-HHHHhh-----c-cCCCCCEEEEeCcccChHH
Confidence            765421 111100     0 0146788776 88887543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.98  E-value=3.6e-09  Score=88.36  Aligned_cols=86  Identities=10%  Similarity=0.043  Sum_probs=64.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++.    .+++++++|+.++++.              +
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~--------------~   99 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL----PDATLHQGDMRDFRLG--------------R   99 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC----TTCEEEECCTTTCCCS--------------S
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHcccC--------------C
Confidence            567899999999999999999985 59999999999999998753    4699999999886541              3


Q ss_pred             CceEEEe-c-CCCCC-CHHHHHHHHHhc
Q psy17126        130 PGIRIIG-N-LPFNV-STPLIIKWIQAI  154 (240)
Q Consensus       130 ~~~~Vvs-N-lPY~I-ss~il~~ll~~~  154 (240)
                      ++|.|++ + ...++ +.+.+.+++...
T Consensus       100 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~  127 (239)
T 3bxo_A          100 KFSAVVSMFSSVGYLKTTEELGAAVASF  127 (239)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHH
T ss_pred             CCcEEEEcCchHhhcCCHHHHHHHHHHH
Confidence            5788884 2 22334 324444555543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.98  E-value=3e-09  Score=93.93  Aligned_cols=102  Identities=11%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             HHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccc
Q psy17126         39 LTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTM  113 (240)
Q Consensus        39 i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~  113 (240)
                      .+..+++.++.  .++.+|||||||+|.++..+++.. ..+++++|++ .+++.++++....  .++++++.+|+.+.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence            44567777776  788999999999999999999874 3699999999 9999999876543  2579999999987644


Q ss_pred             cccchhhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHhcc
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~~~  155 (240)
                      +.              .+|+|++ |..++.+.+...+++....
T Consensus       230 ~~--------------~~D~v~~~~~l~~~~~~~~~~~l~~~~  258 (335)
T 2r3s_A          230 GN--------------DYDLVLLPNFLHHFDVATCEQLLRKIK  258 (335)
T ss_dssp             CS--------------CEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             CC--------------CCcEEEEcchhccCCHHHHHHHHHHHH
Confidence            32              3677776 6566777666556665543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.98  E-value=9.2e-10  Score=92.86  Aligned_cols=95  Identities=6%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc--ccc
Q psy17126         38 RLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF--TMQ  114 (240)
Q Consensus        38 ~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~--~~~  114 (240)
                      .+...+...+. +.++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++       ++++.+|+.+.  +++
T Consensus        27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~   98 (240)
T 3dli_A           27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLP   98 (240)
T ss_dssp             HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHT-CCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSC
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCC-CcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcC
Confidence            34455544443 3567899999999999999999985 6899999999999988752       78899998774  222


Q ss_pred             ccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                      +             +++|.|+++-- .++..+.+..++..
T Consensus        99 ~-------------~~fD~i~~~~~l~~~~~~~~~~~l~~  125 (240)
T 3dli_A           99 D-------------KYLDGVMISHFVEHLDPERLFELLSL  125 (240)
T ss_dssp             T-------------TCBSEEEEESCGGGSCGGGHHHHHHH
T ss_pred             C-------------CCeeEEEECCchhhCCcHHHHHHHHH
Confidence            1             46899888765 34554444444444

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.98  E-value=1.2e-09  Score=93.19  Aligned_cols=89  Identities=12%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh----C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR----R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~----~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      +.....+.+.+...++.+|||||||+|..|..|++.    . .++|+|||+++.|++.++.    ..++++++++|+.+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhH
Confidence            666666665555456789999999999999999986    2 3799999999999887762    236899999999875


Q ss_pred             c-ccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 T-MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~-~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      . ++..          ...++|.|+.+..
T Consensus       143 ~~l~~~----------~~~~fD~I~~d~~  161 (236)
T 2bm8_A          143 TTFEHL----------REMAHPLIFIDNA  161 (236)
T ss_dssp             GGGGGG----------SSSCSSEEEEESS
T ss_pred             HHHHhh----------ccCCCCEEEECCc
Confidence            2 1111          1125788887665

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.98  E-value=1.9e-09  Score=106.63  Aligned_cols=102  Identities=9%  Similarity=0.076  Sum_probs=78.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhc------CC-CCeEEEEcccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA------SP-CPVHFHLGDVM  109 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~------~~-~~v~vi~~D~~  109 (240)
                      .++.+++.+...++.+|||||||+|.++..|++.++  .+|+|||+++.|++.+++++..      .+ .+++++++|+.
T Consensus       709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~  788 (950)
T 3htx_A          709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred             HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence            456667777666889999999999999999999852  6999999999999999875431      11 57999999999


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                      ++++..             +.||+|+++-- .++..+....++..
T Consensus       789 dLp~~d-------------~sFDlVV~~eVLeHL~dp~l~~~L~e  820 (950)
T 3htx_A          789 EFDSRL-------------HDVDIGTCLEVIEHMEEDQACEFGEK  820 (950)
T ss_dssp             SCCTTS-------------CSCCEEEEESCGGGSCHHHHHHHHHH
T ss_pred             hCCccc-------------CCeeEEEEeCchhhCChHHHHHHHHH
Confidence            876532             46899888765 34666665444444

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.97  E-value=2.4e-09  Score=94.13  Aligned_cols=111  Identities=11%  Similarity=-0.014  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--------CCCeEEEEcc
Q psy17126         38 RLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--------PCPVHFHLGD  107 (240)
Q Consensus        38 ~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--------~~~v~vi~~D  107 (240)
                      .++..+++.+..  .++.+|||||||+|.++..+++....+|+|+|+++.|++.++++....        ..+++++++|
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            455555554432  367899999999999999999764579999999999999998865431        2479999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCCCC---CHHHHHHHHHhcc
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV---STPLIIKWIQAIS  155 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I---ss~il~~ll~~~~  155 (240)
                      +.+.++...+..       ..+++|.|+++...+.   +.+....++....
T Consensus        99 ~~~~~~~~~~~~-------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  142 (313)
T 3bgv_A           99 SSKELLIDKFRD-------PQMCFDICSCQFVCHYSFESYEQADMMLRNAC  142 (313)
T ss_dssp             TTTSCSTTTCSS-------TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHH
T ss_pred             ccccchhhhccc-------CCCCEEEEEEecchhhccCCHHHHHHHHHHHH
Confidence            998763221110       0136899999876532   2233445555443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.95  E-value=5.2e-10  Score=97.28  Aligned_cols=90  Identities=11%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             HHHHHHcCCCCC--CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC----------CCCeEEEEccc
Q psy17126         41 DKIVRNAGTITG--NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS----------PCPVHFHLGDV  108 (240)
Q Consensus        41 ~~iv~~~~~~~~--~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~----------~~~v~vi~~D~  108 (240)
                      +.+++.+++.++  .+|||+|||+|..+..++.++ ++|++||+++.++..++++++..          ..+++++++|+
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            346667777777  899999999999999999986 58999999999877776654211          14699999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .++ ++.+         .  ..+|+|+.||||.-.
T Consensus       155 ~~~-L~~~---------~--~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          155 LTA-LTDI---------T--PRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HHH-STTC---------S--SCCSEEEECCCCCCC
T ss_pred             HHH-HHhC---------c--ccCCEEEEcCCCCCc
Confidence            874 1111         1  258999999999653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.94  E-value=2.5e-09  Score=89.19  Aligned_cols=83  Identities=8%  Similarity=-0.064  Sum_probs=60.2

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      -..+.+.+  .+.++|||+|||+|.++..++... ..+|+|+|+|++|++.+++++...+...++..+|......     
T Consensus        40 Y~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~-----  112 (200)
T 3fzg_A           40 YTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVY-----  112 (200)
T ss_dssp             HHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHT-----
T ss_pred             HHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCC-----
Confidence            44455555  457899999999999999998763 2599999999999999999887655322333366644211     


Q ss_pred             hhhcccccCCCCceEEEecC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNl  138 (240)
                               ++++|+|+++.
T Consensus       113 ---------~~~~DvVLa~k  123 (200)
T 3fzg_A          113 ---------KGTYDVVFLLK  123 (200)
T ss_dssp             ---------TSEEEEEEEET
T ss_pred             ---------CCCcChhhHhh
Confidence                     14579999874

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.93  E-value=3.5e-09  Score=87.16  Aligned_cols=78  Identities=13%  Similarity=0.045  Sum_probs=61.3

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      .+++.+.. ++.+|||||||+|.++..+   +..+|+|+|+++.|++.++++.    .+++++++|+.++++++      
T Consensus        28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~------   93 (211)
T 2gs9_A           28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPG------   93 (211)
T ss_dssp             HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCS------
T ss_pred             HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCC------
Confidence            34444433 7889999999999999888   3239999999999999998754    57899999998876432      


Q ss_pred             cccccCCCCceEEEecCCC
Q psy17126        122 RRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlPY  140 (240)
                             +++|.|+++-..
T Consensus        94 -------~~fD~v~~~~~l  105 (211)
T 2gs9_A           94 -------ESFDVVLLFTTL  105 (211)
T ss_dssp             -------SCEEEEEEESCT
T ss_pred             -------CcEEEEEEcChh
Confidence                   368998887664

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.92  E-value=5.1e-09  Score=89.50  Aligned_cols=69  Identities=10%  Similarity=0.055  Sum_probs=57.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++..   .+  ++++|+.++++++             ++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~---~~--~~~~d~~~~~~~~-------------~~  114 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV---KN--VVEAKAEDLPFPS-------------GA  114 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC---SC--EEECCTTSCCSCT-------------TC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC---CC--EEECcHHHCCCCC-------------CC
Confidence            77899999999999999999984 699999999999999987643   22  8899998876432             36


Q ss_pred             ceEEEecC
Q psy17126        131 GIRIIGNL  138 (240)
Q Consensus       131 ~~~VvsNl  138 (240)
                      +|.|+++-
T Consensus       115 fD~v~~~~  122 (260)
T 2avn_A          115 FEAVLALG  122 (260)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcc
Confidence            89988864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.92  E-value=4.7e-09  Score=85.76  Aligned_cols=60  Identities=20%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             HHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         43 IVRNAG-TITGNEVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        43 iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      +.+... +.++.+|||+|||+|.+|..++++.+   .+|+|+|+++..         . ..+++++++|+.+.+
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-CTTCEEEECCTTTTS
T ss_pred             HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-CCCceEEEccccchh
Confidence            444444 46788999999999999999998743   689999999842         1 257999999998765

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.92  E-value=1.9e-09  Score=94.08  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      .+.+|||||||+|.+++.++++ +..+|++||+|+.+++.++++...    . .++++++.+|+.++ +...        
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~--------  145 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAKS--------  145 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHTC--------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-HhhC--------
Confidence            5689999999999999999987 347999999999999999987532    2 36899999999763 1110        


Q ss_pred             ccCCCCceEEEecCCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~I  142 (240)
                         .+++|+|++++|+..
T Consensus       146 ---~~~fD~Ii~d~~~~~  160 (275)
T 1iy9_A          146 ---ENQYDVIMVDSTEPV  160 (275)
T ss_dssp             ---CSCEEEEEESCSSCC
T ss_pred             ---CCCeeEEEECCCCCC
Confidence               146899999998744

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.92  E-value=3.8e-09  Score=87.23  Aligned_cols=87  Identities=16%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             HHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126         43 IVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        43 iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      |.+... +.++.+|||+|||||.+|..++++ .++|+|||+++..          ...+++++++|+.+.+........ 
T Consensus        16 i~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~-   83 (191)
T 3dou_A           16 LLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRA-   83 (191)
T ss_dssp             HHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHH-
T ss_pred             HHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHH-
Confidence            444443 467899999999999999999998 5799999999852          125799999999886532211110 


Q ss_pred             ccccc--CCCCceEEEecCCCCCCH
Q psy17126        122 RRDWS--EGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       122 ~~~~~--~~~~~~~VvsNlPY~Iss  144 (240)
                         +.  ..+++|+|++|+|.+.+.
T Consensus        84 ---~~~~~~~~~D~Vlsd~~~~~~g  105 (191)
T 3dou_A           84 ---LREEGIEKVDDVVSDAMAKVSG  105 (191)
T ss_dssp             ---HHHHTCSSEEEEEECCCCCCCS
T ss_pred             ---hhcccCCcceEEecCCCcCCCC
Confidence               00  002689999999877653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.91  E-value=6.3e-09  Score=88.40  Aligned_cols=101  Identities=11%  Similarity=-0.057  Sum_probs=71.2

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ..+.+.....+...+...++.+|||||||+|..|..+++..  .++|+++|+++.+++.++++.+..+  ++++++++|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            34556554444333444567899999999999999999873  3799999999999999999876544  5799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++- +.+...    +. ..+++|.|+.+.+
T Consensus       132 ~~~l-~~l~~~----~~-~~~~fD~I~~d~~  156 (237)
T 3c3y_A          132 MLAL-DNLLQG----QE-SEGSYDFGFVDAD  156 (237)
T ss_dssp             HHHH-HHHHHS----TT-CTTCEEEEEECSC
T ss_pred             HHHH-HHHHhc----cC-CCCCcCEEEECCc
Confidence            7641 111100    00 0146899998755

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.90  E-value=2.3e-09  Score=94.75  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .++.+|||||||+|.++..+++.. ..+|++||+|+.+++.++++...     ..++++++.+|+.++....  .     
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~-----  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT--P-----  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS--C-----
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc--c-----
Confidence            467899999999999999999873 36999999999999999986521     1368999999998753210  0     


Q ss_pred             cccCCCCceEEEecCCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~I  142 (240)
                          .+++|+|++|+|+..
T Consensus       167 ----~~~fDvIi~d~~~~~  181 (304)
T 3bwc_A          167 ----DNTYDVVIIDTTDPA  181 (304)
T ss_dssp             ----TTCEEEEEEECC---
T ss_pred             ----CCceeEEEECCCCcc
Confidence                146899999988644

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.90  E-value=2e-08  Score=90.06  Aligned_cols=102  Identities=12%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~  114 (240)
                      ..+..+++.++..++.+|||||||+|.++..++++.+ .+++++|+ +.+++.++++....  .++++++.+|+.+.+++
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            4556778888888889999999999999999999853 59999999 99999999876543  35699999999876543


Q ss_pred             ccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +               .|+|+++.. ++++.+...+++....
T Consensus       256 ~---------------~D~v~~~~vlh~~~d~~~~~~l~~~~  282 (359)
T 1x19_A          256 E---------------ADAVLFCRILYSANEQLSTIMCKKAF  282 (359)
T ss_dssp             C---------------CSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             C---------------CCEEEEechhccCCHHHHHHHHHHHH
Confidence            2               266665544 4566655556665543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.90  E-value=1e-09  Score=94.53  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-----------------------------
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-----------------------------   98 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-----------------------------   98 (240)
                      +..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.++++++...                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            456788999999999999888777654589999999999999987654321                             


Q ss_pred             -CCeE-EEEccccccc-ccccchhhhcccccCCCCceEEEecCC
Q psy17126         99 -CPVH-FHLGDVMSFT-MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus        99 -~~v~-vi~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       .+++ ++++|+.+.+ +....          .+++|.|+++.-
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~----------~~~fD~V~~~~~  165 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAV----------LPLADCVLTLLA  165 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCC----------CCCEEEEEEESC
T ss_pred             HhhhheEEeccccCCCCCCccc----------cCCCCEeeehHH
Confidence             1233 8899998742 22111          146899999864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.90  E-value=3.3e-09  Score=101.44  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .+.+|||||||+|.++..|++.| ++|+|||.++.+++.|+..+...+ .++++.++|++++.-.  +.         .+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~g-a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~--~~---------~~  133 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA--LE---------EG  133 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH--CC---------TT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh--cc---------CC
Confidence            45799999999999999999996 799999999999999998776544 4799999999875211  10         14


Q ss_pred             CceEEEecCC
Q psy17126        130 PGIRIIGNLP  139 (240)
Q Consensus       130 ~~~~VvsNlP  139 (240)
                      +||+|++.=.
T Consensus       134 ~fD~v~~~e~  143 (569)
T 4azs_A          134 EFDLAIGLSV  143 (569)
T ss_dssp             SCSEEEEESC
T ss_pred             CccEEEECcc
Confidence            6898887644

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.90  E-value=2.1e-09  Score=93.93  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC------------CCCeEEEEcccccccccccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS------------PCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~------------~~~v~vi~~D~~~~~~~~~~  117 (240)
                      .++.+|||||||+|.++..+++++..+|++||+|+.+++.++++. ..            .++++++.+|+.++- ..  
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l-~~--  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KN--  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH-HH--
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh-cc--
Confidence            456899999999999999999884469999999999999999876 22            368999999987631 11  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      .          +++|+|++++|+..
T Consensus       150 ~----------~~fD~Ii~d~~~~~  164 (281)
T 1mjf_A          150 N----------RGFDVIIADSTDPV  164 (281)
T ss_dssp             C----------CCEEEEEEECCCCC
T ss_pred             c----------CCeeEEEECCCCCC
Confidence            1          36899999998643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.88  E-value=7.7e-09  Score=88.50  Aligned_cols=73  Identities=12%  Similarity=0.066  Sum_probs=60.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+++.|++.++++.    .++.++.+|+.++++.+             
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~-------------  146 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSD-------------  146 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCT-------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCC-------------
Confidence            567899999999999999999873 369999999999999988643    56899999998876432             


Q ss_pred             CCceEEEecCC
Q psy17126        129 LPGIRIIGNLP  139 (240)
Q Consensus       129 ~~~~~VvsNlP  139 (240)
                      +++|.|+++..
T Consensus       147 ~~fD~v~~~~~  157 (269)
T 1p91_A          147 TSMDAIIRIYA  157 (269)
T ss_dssp             TCEEEEEEESC
T ss_pred             CceeEEEEeCC
Confidence            36899988755

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.88  E-value=3e-09  Score=95.58  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      .....+|||||||+|.+++.+++.. ..+|++||+|+.+++.+++++..    . .++++++++|+.++ ++.. .    
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l~~~-~----  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-LKNA-A----  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-HHTS-C----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-HHhc-c----
Confidence            3456899999999999999999874 36999999999999999987643    1 36899999999764 1111 0    


Q ss_pred             ccccCCCCceEEEecCC
Q psy17126        123 RDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlP  139 (240)
                           .+++|+||+|++
T Consensus       192 -----~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 -----EGSYDAVIVDSS  203 (334)
T ss_dssp             -----TTCEEEEEECCC
T ss_pred             -----CCCccEEEECCC
Confidence                 136899999986

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.87  E-value=3.7e-09  Score=93.63  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .++.+|||||||+|.+++.++++. ..+|++||+|+.+++.++++...    . .++++++.+|+.++ ++..       
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l~~~-------  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MKQN-------  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HHTC-------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-HhhC-------
Confidence            456899999999999999999874 37999999999999999987543    2 47899999999763 1110       


Q ss_pred             cccCCCCceEEEecCCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~I  142 (240)
                          .+++|+||+++|...
T Consensus       166 ----~~~fD~Ii~d~~~~~  180 (304)
T 2o07_A          166 ----QDAFDVIITDSSDPM  180 (304)
T ss_dssp             ----SSCEEEEEEECC---
T ss_pred             ----CCCceEEEECCCCCC
Confidence                146899999988643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.87  E-value=5.8e-09  Score=91.92  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=61.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      .+.+|||||||+|.++..+++.. ..+|++||+|+.+++.+++++..    . .++++++++|+.+.- +..        
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l-~~~--------  160 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV-RKF--------  160 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG-GGC--------
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH-hhC--------
Confidence            45899999999999999999873 47999999999999999987532    2 368999999987631 110        


Q ss_pred             ccCCCCceEEEecCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~  141 (240)
                         .+++|+|++|+|..
T Consensus       161 ---~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          161 ---KNEFDVIIIDSTDP  174 (296)
T ss_dssp             ---SSCEEEEEEEC---
T ss_pred             ---CCCceEEEEcCCCc
Confidence               13689999998753

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.86  E-value=8.8e-09  Score=91.48  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc-----C-CCCeEEEEcccccccccccchhhhc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA-----S-PCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~-----~-~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      .++.+|||||||+|.++..+++.. ..+|++||+|+.+++.++++...     . .++++++.+|+.++ ++..      
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~------  148 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LERT------  148 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HHHC------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-HHhc------
Confidence            356899999999999999999873 46999999999999999987542     2 36899999999864 1110      


Q ss_pred             ccccCCCCceEEEecCCCCC
Q psy17126        123 RDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlPY~I  142 (240)
                           .+++|+|+++++...
T Consensus       149 -----~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          149 -----EERYDVVIIDLTDPV  163 (314)
T ss_dssp             -----CCCEEEEEEECCCCB
T ss_pred             -----CCCccEEEECCCCcc
Confidence                 146899999988755

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.86  E-value=7.1e-09  Score=87.64  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+.+.....+...+...++.+|||||||+|..|..++...  ..+|+++|+++.+++.++++....+  ++++++++|+.
T Consensus        55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            4566655554444444567899999999999999999864  3699999999999999998765433  57999999987


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +. ++.+...      ...+++|.|+.+.+
T Consensus       135 ~~-l~~l~~~------~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          135 AT-LEQLTQG------KPLPEFDLIFIDAD  157 (232)
T ss_dssp             HH-HHHHHTS------SSCCCEEEEEECSC
T ss_pred             HH-HHHHHhc------CCCCCcCEEEECCC
Confidence            53 1111100      00036899998866

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.85  E-value=2.2e-08  Score=89.88  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+++.+.+.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ++++++.+|+.+ +++.  
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~--  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV--  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC--
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC--
Confidence            4566666777889999999999999999999853 69999999 999999998765433  589999999975 3321  


Q ss_pred             hhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                                  .+|+|+++-. ++.+.+...+++..
T Consensus       248 ------------~~D~v~~~~vl~~~~~~~~~~~l~~  272 (374)
T 1qzz_A          248 ------------TADVVLLSFVLLNWSDEDALTILRG  272 (374)
T ss_dssp             ------------CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             ------------CCCEEEEeccccCCCHHHHHHHHHH
Confidence                        3677777655 35666644444444

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.84  E-value=1.8e-09  Score=94.53  Aligned_cols=84  Identities=11%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH---hcCCCCeEEE--Eccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA---QASPCPVHFH--LGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~---~~~~~~v~vi--~~D~~~~~~~  114 (240)
                      +..+.+...+.++.+|||+|||||.+|..++++  ++|+|||+++ |+..+++..   ...+.+++++  ++|+.+++  
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--  145 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--  145 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--
Confidence            345555544568899999999999999999987  5999999999 643332210   0011278999  99998754  


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +             .++|.|+++.. ++
T Consensus       146 ~-------------~~fD~Vvsd~~-~~  159 (276)
T 2wa2_A          146 P-------------FQADTVLCDIG-ES  159 (276)
T ss_dssp             C-------------CCCSEEEECCC-CC
T ss_pred             C-------------CCcCEEEECCC-cC
Confidence            1             36899999988 44

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.84  E-value=3.2e-08  Score=88.40  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+++.+++.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ++++++.+|+.+ +++.  
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~--  248 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR--  248 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS--
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC--
Confidence            4556667777889999999999999999998853 58999999 999999998765533  589999999975 2221  


Q ss_pred             hhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAI  154 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~  154 (240)
                                  .+|+|+++-. ++++.+...+++...
T Consensus       249 ------------~~D~v~~~~vl~~~~~~~~~~~l~~~  274 (360)
T 1tw3_A          249 ------------KADAIILSFVLLNWPDHDAVRILTRC  274 (360)
T ss_dssp             ------------CEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             ------------CccEEEEcccccCCCHHHHHHHHHHH
Confidence                        3677776555 456666444444443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.83  E-value=4.3e-09  Score=93.91  Aligned_cols=78  Identities=19%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .++.+|||||||+|.++..+++.. ..+|++||+|+.+++.++++....     .++++++++|+.+.- +..       
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l-~~~-------  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL-ENV-------  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-HHC-------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHH-hhc-------
Confidence            356899999999999999999873 479999999999999999876531     368999999997631 110       


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                          .+++|+||+|++
T Consensus       187 ----~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 ----TNTYDVIIVDSS  198 (321)
T ss_dssp             ----CSCEEEEEEECC
T ss_pred             ----CCCceEEEECCc
Confidence                136899999984

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.82  E-value=1.1e-08  Score=90.35  Aligned_cols=89  Identities=9%  Similarity=-0.060  Sum_probs=61.8

Q ss_pred             HHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEE-Eccccccccccc
Q psy17126         39 LTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFH-LGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi-~~D~~~~~~~~~  116 (240)
                      -+..+++...+. ++.+|||||||||.+|..++++++.+|+|||+++.|++.+.+.    ..++... ..|+..+....+
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l  147 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDF  147 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGC
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcccceecccCceecchhhC
Confidence            345666776664 5779999999999999999998667999999999999874321    2344433 345555443221


Q ss_pred             chhhhcccccCCCCceEEEecCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                       +.         ..+|.|+++.-|.
T Consensus       148 -~~---------~~fD~v~~d~sf~  162 (291)
T 3hp7_A          148 -TE---------GLPSFASIDVSFI  162 (291)
T ss_dssp             -TT---------CCCSEEEECCSSS
T ss_pred             -CC---------CCCCEEEEEeeHh
Confidence             11         2378888888764

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.82  E-value=2.8e-09  Score=90.40  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC----------------------------
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC----------------------------   99 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~----------------------------   99 (240)
                      +..++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++....+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4456789999999999999999887534999999999999999887643211                            


Q ss_pred             --Ce-EEEEcccccccc-cccchhhhcccccCCCCceEEEecCC
Q psy17126        100 --PV-HFHLGDVMSFTM-QNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       100 --~v-~vi~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                        ++ +++++|+.+.+. ....          .+.+|+|+++.-
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~----------~~~fD~v~~~~~  166 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVS----------LPPADCLLSTLC  166 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCC----------CCCEEEEEEESC
T ss_pred             hhhheeEEEeeeccCCCCCccc----------cCCccEEEEhhh
Confidence              27 899999988643 2110          146899998754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.82  E-value=4.9e-09  Score=90.99  Aligned_cols=92  Identities=13%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             HHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC----------------C--
Q psy17126         40 TDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP----------------C--   99 (240)
Q Consensus        40 ~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~----------------~--   99 (240)
                      ...+.+.+..  .++.+|||||||+|.++..++.....+|+|+|+++.|++.+++++....                .  
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            4455555432  3678999999999995544444334699999999999999887543210                0  


Q ss_pred             -------------CeEEEEccccc-ccccccchhhhcccccCCCCceEEEecCC
Q psy17126        100 -------------PVHFHLGDVMS-FTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       100 -------------~v~vi~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                   .++++++|+.+ .++....       + ..+++|+|++|.-
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~-~~~~fD~V~~~~~  183 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGS-------P-APLPADALVSAFC  183 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSC-------S-SCSSEEEEEEESC
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccc-------c-CCCCCCEEEehhh
Confidence                         15677789887 4443210       0 0146899999865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.82  E-value=2.7e-08  Score=88.60  Aligned_cols=101  Identities=14%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             HHHHHcCCCC-CCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         42 KIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        42 ~iv~~~~~~~-~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      .+++.++..+ +.+|||||||+|.++..++++.+ .+++++|+ +.+++.++++....+  ++++++.+|+.+.+.  ..
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN--FE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG--GT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc--cC
Confidence            5666666666 88999999999999999999753 69999999 889999988765443  579999999987541  01


Q ss_pred             hhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +          +.+|+|+++-- .+.+.+...+++....
T Consensus       246 ~----------~~~D~v~~~~vlh~~~~~~~~~~l~~~~  274 (352)
T 3mcz_A          246 G----------GAADVVMLNDCLHYFDAREAREVIGHAA  274 (352)
T ss_dssp             T----------CCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             C----------CCccEEEEecccccCCHHHHHHHHHHHH
Confidence            1          24677776544 4566665556665543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.80  E-value=9e-09  Score=91.94  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      .+|||||||+|.+++.+++.. ..+|++||+|+.|++.++++.... .++++++++|+.++- ... .         .++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l-~~~-~---------~~~  159 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA-ESF-T---------PAS  159 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH-HTC-C---------TTC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH-hhc-c---------CCC
Confidence            499999999999999999853 369999999999999999876432 368999999998741 111 0         146


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      ||+||++++
T Consensus       160 fDvIi~D~~  168 (317)
T 3gjy_A          160 RDVIIRDVF  168 (317)
T ss_dssp             EEEEEECCS
T ss_pred             CCEEEECCC
Confidence            899999864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.80  E-value=1.1e-08  Score=84.46  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      ..+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++.      .+++++|+.+...+.  .  
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~--~--   90 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPY--E--   90 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCS--C--
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCC--C--
Confidence            34555555 57889999999999999999998 489999999999999887532      368899988643221  1  


Q ss_pred             hcccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        121 RRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                             .+++|.|+++-.. ++..+  ..++...
T Consensus        91 -------~~~fD~v~~~~~l~~~~~~--~~~l~~~  116 (230)
T 3cc8_A           91 -------EEQFDCVIFGDVLEHLFDP--WAVIEKV  116 (230)
T ss_dssp             -------TTCEEEEEEESCGGGSSCH--HHHHHHT
T ss_pred             -------CCccCEEEECChhhhcCCH--HHHHHHH
Confidence                   1368988887553 34433  2444443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.80  E-value=6.3e-09  Score=92.69  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ....+|||||||+|.+++.+++.. ..+|++||+|+.+++.+++++...     .++++++.+|+.+. +..  .     
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l~~--~-----  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKN--H-----  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHH--C-----
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-HHh--c-----
Confidence            356799999999999999999874 379999999999999999876532     46899999999763 111  0     


Q ss_pred             cccCCCCceEEEecCCC
Q psy17126        124 DWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY  140 (240)
                          .+++|+||+|++.
T Consensus       179 ----~~~fD~Ii~d~~~  191 (314)
T 2b2c_A          179 ----KNEFDVIITDSSD  191 (314)
T ss_dssp             ----TTCEEEEEECCC-
T ss_pred             ----CCCceEEEEcCCC
Confidence                1468999999864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.79  E-value=9.3e-09  Score=89.95  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      ..++.+|||||||+|.+++.+++.. ..+|++||+|+.+++.++++....     .++++++++|+.+.- ...      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l-~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL-ENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-HHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH-HhC------
Confidence            3456899999999999999999874 369999999999999999876432     368999999997641 110      


Q ss_pred             ccccCCCCceEEEecCCCC
Q psy17126        123 RDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlPY~  141 (240)
                           .+++|+|+++.+..
T Consensus       149 -----~~~fD~Ii~d~~~~  162 (283)
T 2i7c_A          149 -----TNTYDVIIVDSSDP  162 (283)
T ss_dssp             -----CSCEEEEEEECCCT
T ss_pred             -----CCCceEEEEcCCCC
Confidence                 14689999987643

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.79  E-value=7.1e-09  Score=91.64  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=46.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC-------CeEEEEcccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVM  109 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~-------~v~vi~~D~~  109 (240)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+.       +++++++|+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~  113 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR  113 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcc
Confidence            4789999999999876666665447999999999999999987654322       2567788874

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.79  E-value=1.4e-08  Score=87.57  Aligned_cols=73  Identities=14%  Similarity=0.027  Sum_probs=62.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .+..+|||||||+|.|+.++.  ...+++|+|+|+.|++.+++++...+.++++.++|....+++              +
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~--------------~  167 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA--------------E  167 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC--------------C
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC--------------C
Confidence            457899999999999999987  457999999999999999998876677899999999876544              3


Q ss_pred             CceEEEecC
Q psy17126        130 PGIRIIGNL  138 (240)
Q Consensus       130 ~~~~VvsNl  138 (240)
                      ++|+|+++.
T Consensus       168 ~~DvvLllk  176 (253)
T 3frh_A          168 AGDLALIFK  176 (253)
T ss_dssp             BCSEEEEES
T ss_pred             CcchHHHHH
Confidence            579999885

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.78  E-value=1.1e-08  Score=89.80  Aligned_cols=99  Identities=15%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM  113 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~  113 (240)
                      .+-|-+++.+++.+.+.++..+||.+||.|..|..++++ .++|+|+|.|+.+++.+++ +..  ++++++++|+.+++ 
T Consensus         5 ~H~pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~-   79 (285)
T 1wg8_A            5 THVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLK-   79 (285)
T ss_dssp             CCCCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHH-
T ss_pred             CchhHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHH-
Confidence            345667888999999999999999999999999999998 5799999999999999987 543  68999999999864 


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                       .....   .++   .++|.|+.+|.|  ||+-
T Consensus        80 -~~L~~---~g~---~~vDgIL~DLGv--SS~Q  103 (285)
T 1wg8_A           80 -RHLAA---LGV---ERVDGILADLGV--SSFH  103 (285)
T ss_dssp             -HHHHH---TTC---SCEEEEEEECSC--CHHH
T ss_pred             -HHHHH---cCC---CCcCEEEeCCcc--cccc
Confidence             21111   111   357899999875  4443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.77  E-value=2.3e-09  Score=93.27  Aligned_cols=84  Identities=8%  Similarity=0.001  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH---hcCCCCeEEE--Eccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA---QASPCPVHFH--LGDVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~---~~~~~~v~vi--~~D~~~~~~~  114 (240)
                      +..+.+...+.++.+|||||||||.+|..++++  ++|+|||+++ |+..+++..   ...+.++.++  ++|+.+++  
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--  137 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--  137 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--
Confidence            455666655678899999999999999999987  6999999999 533222110   0111268999  99998754  


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +             .++|.|+++.. ++
T Consensus       138 ~-------------~~fD~V~sd~~-~~  151 (265)
T 2oxt_A          138 V-------------ERTDVIMCDVG-ES  151 (265)
T ss_dssp             C-------------CCCSEEEECCC-CC
T ss_pred             C-------------CCCcEEEEeCc-cc
Confidence            1             36899999988 44

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.76  E-value=5.1e-08  Score=86.25  Aligned_cols=99  Identities=16%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~  115 (240)
                      ....+++..++.+ .+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....  .++++++.+|+.+ +++ 
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence            4566777777666 899999999999999999875 369999999 99999998865432  3689999999977 332 


Q ss_pred             cchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI  154 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~  154 (240)
                                   ..+|+|+++-.. +.+.+...+++...
T Consensus       232 -------------~~~D~v~~~~vl~~~~~~~~~~~l~~~  258 (334)
T 2ip2_A          232 -------------SNGDIYLLSRIIGDLDEAASLRLLGNC  258 (334)
T ss_dssp             -------------SSCSEEEEESCGGGCCHHHHHHHHHHH
T ss_pred             -------------CCCCEEEEchhccCCCHHHHHHHHHHH
Confidence                         146777766553 46665555555543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.75  E-value=2.1e-08  Score=87.33  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHcC-CCCCCEEEEECCch---hHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         37 PRLTDKIVRNAG-TITGNEVCEVGPGP---GSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~-~~~~~~VLEIG~Gt---G~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      ...+.++++.+. .....+|||||||+   |.++..+.+.. ..+|++||+|+.|++.++++... .++++++++|+.+.
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDP  140 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCc
Confidence            345555565554 23457999999999   99987777653 36999999999999999987643 36899999999875


Q ss_pred             c
Q psy17126        112 T  112 (240)
Q Consensus       112 ~  112 (240)
                      +
T Consensus       141 ~  141 (274)
T 2qe6_A          141 E  141 (274)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.75  E-value=3.1e-08  Score=90.38  Aligned_cols=118  Identities=6%  Similarity=-0.121  Sum_probs=80.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC---------------C-CCeEEEEcccccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS---------------P-CPVHFHLGDVMSFTM  113 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~---------------~-~~v~vi~~D~~~~~~  113 (240)
                      ++.+|||+|||+|.++..++++ +..+|+++|+|+.+++.+++|++..               + .+++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999997 3468999999999999999987654               3 349999999976421


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc---cccccchhh----hhHHHHHHHcCCCCCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---NLLFPKHKR----QLVVSLLERACVKPIL  181 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---~~~~~~~~~----~~~~~~l~~~gi~~~~  181 (240)
                       ..           ...+|.|+.++| ....+++...+.....   .+..+....    ......+++.|..|.+
T Consensus       127 -~~-----------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~td~~~l~~~~~~~~~~~yg~~p~~  188 (378)
T 2dul_A          127 -ER-----------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLR  188 (378)
T ss_dssp             -HS-----------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCC
T ss_pred             -hc-----------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEeecchhhccccHHHHHHHccCCCcc
Confidence             10           136899997764 4446666665554332   211111111    2334456677766654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.73  E-value=1.4e-07  Score=85.09  Aligned_cols=100  Identities=15%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~  116 (240)
                      +..+++..+..++.+|||||||+|.++..++++.+ .+++++|+ +.+++.++++....  .++++++.+|+.+ +++. 
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~-  267 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD-  267 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS-
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC-
Confidence            45667777777889999999999999999999853 59999999 99999999876543  3789999999972 3321 


Q ss_pred             chhhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHhcc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~~~  155 (240)
                                   .+|+|++ |.-.+.+.+...+++....
T Consensus       268 -------------~~D~v~~~~vlh~~~d~~~~~~L~~~~  294 (369)
T 3gwz_A          268 -------------GADVYLIKHVLHDWDDDDVVRILRRIA  294 (369)
T ss_dssp             -------------SCSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             -------------CceEEEhhhhhccCCHHHHHHHHHHHH
Confidence                         3566555 4445677765555555543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.72  E-value=1.6e-08  Score=87.79  Aligned_cols=73  Identities=7%  Similarity=-0.132  Sum_probs=59.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEcccccccccccchhhhccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      ..+.+|||||||+|.+++.+++.+ .+|++||+|+.|++.++++...     ..++++++.+|+.++.            
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------------
Confidence            356799999999999999999885 8999999999999999875422     1368999999998753            


Q ss_pred             ccCCCCceEEEecCC
Q psy17126        125 WSEGLPGIRIIGNLP  139 (240)
Q Consensus       125 ~~~~~~~~~VvsNlP  139 (240)
                          +++|+||++++
T Consensus       138 ----~~fD~Ii~d~~  148 (262)
T 2cmg_A          138 ----KKYDLIFCLQE  148 (262)
T ss_dssp             ----CCEEEEEESSC
T ss_pred             ----hhCCEEEECCC
Confidence                15799999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.71  E-value=5.3e-08  Score=79.02  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC-C---------CeEEEEeCCcchHHHHHHHHhcCCCCeEEE-Ecccccccccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR-P---------ARLVLIEKDPRFTPCLDMLAQASPCPVHFH-LGDVMSFTMQNMF  117 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~-~---------~~V~avEid~~m~~~l~~~~~~~~~~v~vi-~~D~~~~~~~~~~  117 (240)
                      +.++.+|||||||+|.++..++++. .         .+|+|+|+++.+         . ..+++++ ++|+.+.+.....
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~-~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P-LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C-CTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c-CCCCeEEEeccCCCHHHHHHH
Confidence            4678999999999999999999984 2         689999999843         1 1468899 9998765432111


Q ss_pred             hhhhcccccCCCCceEEEecCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ..    .+ ...++|+|+++.+++.
T Consensus        90 ~~----~~-~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           90 LE----VL-PGRRADVILSDMAPNA  109 (196)
T ss_dssp             HH----HS-GGGCEEEEEECCCCCC
T ss_pred             HH----hc-CCCCCcEEEeCCCCCC
Confidence            00    00 1136899999986554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.67  E-value=1.7e-07  Score=84.39  Aligned_cols=90  Identities=8%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc--ccccchhhhccc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT--MQNMFSEDRRRD  124 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~--~~~~~~~~~~~~  124 (240)
                      ....+|||||||+|.++..++++. ..+++++|+ +.+++.++++....+  ++++++.+|+.+..  ++          
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----------  246 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----------  246 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----------
Confidence            456899999999999999999875 369999999 999999998776543  58999999998752  32          


Q ss_pred             ccCCCCceEEEec-CCCCCCHHHHHHHHHhc
Q psy17126        125 WSEGLPGIRIIGN-LPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       125 ~~~~~~~~~VvsN-lPY~Iss~il~~ll~~~  154 (240)
                          +.+|+|+.+ .-++.+.+...+++.+.
T Consensus       247 ----~~~D~v~~~~vlh~~~~~~~~~~l~~~  273 (363)
T 3dp7_A          247 ----TGFDAVWMSQFLDCFSEEEVISILTRV  273 (363)
T ss_dssp             ----CCCSEEEEESCSTTSCHHHHHHHHHHH
T ss_pred             ----CCcCEEEEechhhhCCHHHHHHHHHHH
Confidence                145666654 44556666555565554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.66  E-value=9.5e-08  Score=84.58  Aligned_cols=94  Identities=7%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             HHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhh
Q psy17126         45 RNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      +..+..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ++++++.+|+.+ +++.      
T Consensus       163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~------  234 (332)
T 3i53_A          163 AKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA------  234 (332)
T ss_dssp             GSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC------
T ss_pred             HhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC------
Confidence            334445678999999999999999998753 68999999 999999998765443  789999999973 3321      


Q ss_pred             cccccCCCCceEEEe-cCCCCCCHHHHHHHHHhc
Q psy17126        122 RRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       122 ~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~~  154 (240)
                              .+|+|++ |.-++.+.+...+++.+.
T Consensus       235 --------~~D~v~~~~vlh~~~~~~~~~~l~~~  260 (332)
T 3i53_A          235 --------GAGGYVLSAVLHDWDDLSAVAILRRC  260 (332)
T ss_dssp             --------SCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             --------CCcEEEEehhhccCCHHHHHHHHHHH
Confidence                    3566555 444567776555555543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.65  E-value=4e-08  Score=90.12  Aligned_cols=118  Identities=10%  Similarity=0.024  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CC-eEEEEccccccccc-ccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CP-VHFHLGDVMSFTMQ-NMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~-v~vi~~D~~~~~~~-~~~~~~~~~  123 (240)
                      .++.+|||++||+|.++..++++.  +.+|+++|+++.+++.+++|++..+  ++ ++++++|+.++- . ..       
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l-~~~~-------  122 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFL-RKEW-------  122 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHH-HSCC-------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHH-HHhh-------
Confidence            467899999999999999999863  3689999999999999999987654  34 999999997641 1 11       


Q ss_pred             cccCCCCceEEEecCCCCCCHHHHHHHHHhccc---cccccchhh----hhHHHHHHHcCCCCC
Q psy17126        124 DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---NLLFPKHKR----QLVVSLLERACVKPI  180 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---~~~~~~~~~----~~~~~~l~~~gi~~~  180 (240)
                          ...||+|+.|| |....+++...+.....   .+..+....    ......+++.|..|.
T Consensus       123 ----~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~  181 (392)
T 3axs_A          123 ----GFGFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPL  181 (392)
T ss_dssp             ----SSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCC
T ss_pred             ----CCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCccc
Confidence                13689999997 65555666555553322   222222211    234455677777764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.64  E-value=2.8e-08  Score=86.63  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             hccCccccCCHH------HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCC
Q psy17126         27 KQLSQNFLFEPR------LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPC   99 (240)
Q Consensus        27 k~~gQ~fl~d~~------i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~   99 (240)
                      +-+|.|.-+...      +...+.+.+  .+..+|||||||+|-|+..++... ..+|+|+|+|++|++.+++++...+.
T Consensus       104 ~~l~~H~STreRLp~lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~  181 (281)
T 3lcv_B          104 RAMSVHISTRERLPHLDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV  181 (281)
T ss_dssp             HHHTTSHHHHHHGGGHHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCHHHHhHhHHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC
Confidence            446666544432      223333344  346799999999999999998763 47999999999999999999877776


Q ss_pred             CeEEEEcccccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        100 PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       100 ~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +.++.+.|...-+++              +++|++++|+-
T Consensus       182 ~~~~~v~D~~~~~p~--------------~~~DvaL~lkt  207 (281)
T 3lcv_B          182 PHRTNVADLLEDRLD--------------EPADVTLLLKT  207 (281)
T ss_dssp             CEEEEECCTTTSCCC--------------SCCSEEEETTC
T ss_pred             CceEEEeeecccCCC--------------CCcchHHHHHH
Confidence            789999998765432              46899999853

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.64  E-value=9.2e-09  Score=93.94  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~   93 (240)
                      .+++.+++.+.+.++.+|||||||+|.++..+++++ .+|+|+|+|+.|++.++++
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHc
Confidence            456777777787889999999999999999999985 6999999999999998863

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.63  E-value=3.3e-08  Score=84.22  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             HHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         38 RLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        38 ~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .-+.++++.+.+. ++.+|||||||||.+|..++++++.+|+|||+++.|++.+++
T Consensus        23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~   78 (232)
T 3opn_A           23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIR   78 (232)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHH
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHH
Confidence            3556777777654 467999999999999999999865699999999999998765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.62  E-value=6.5e-08  Score=80.40  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      +.+|||||||+|.++..++..     +|+|+++.|++.++++      +++++++|+.+++++.             +.+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~-------------~~f  103 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKD-------------ESF  103 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCT-------------TCE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCC-------------CCe
Confidence            789999999999999988653     9999999999998863      6899999998765432             368


Q ss_pred             eEEEecCCC
Q psy17126        132 IRIIGNLPF  140 (240)
Q Consensus       132 ~~VvsNlPY  140 (240)
                      |+|+++-.+
T Consensus       104 D~v~~~~~l  112 (219)
T 1vlm_A          104 DFALMVTTI  112 (219)
T ss_dssp             EEEEEESCG
T ss_pred             eEEEEcchH
Confidence            988887653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.60  E-value=4.6e-08  Score=85.10  Aligned_cols=88  Identities=17%  Similarity=0.123  Sum_probs=54.2

Q ss_pred             CCCCEEEEECCchhHHHHHHH----hhC-CCeE--EEEeCCcchHHHHHHHHhcCC--CCeEE--EEcccccccccccch
Q psy17126         50 ITGNEVCEVGPGPGSITRSIL----NRR-PARL--VLIEKDPRFTPCLDMLAQASP--CPVHF--HLGDVMSFTMQNMFS  118 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La----~~~-~~~V--~avEid~~m~~~l~~~~~~~~--~~v~v--i~~D~~~~~~~~~~~  118 (240)
                      .++.+|||||||+|.+|..++    .+. ..+|  +|+|+|+.|++.++++.....  .++++  ..+++.++... . .
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR-M-L  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH-H-H
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhh-h-c
Confidence            467899999999998876443    332 2444  999999999999998765321  34544  45555432200 0 0


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCH
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVST  144 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss  144 (240)
                          .++ ..++||+|+++.- +++..
T Consensus       129 ----~~~-~~~~fD~V~~~~~l~~~~d  150 (292)
T 2aot_A          129 ----EKK-ELQKWDFIHMIQMLYYVKD  150 (292)
T ss_dssp             ----TTT-CCCCEEEEEEESCGGGCSC
T ss_pred             ----ccc-CCCceeEEEEeeeeeecCC
Confidence                000 0146898888754 45554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.58  E-value=9.1e-08  Score=83.68  Aligned_cols=93  Identities=10%  Similarity=0.003  Sum_probs=64.5

Q ss_pred             CCCEEEEECCchhH----HHHHHHhh-C----CCeEEEEeCCcchHHHHHHHHhc-------------------C---C-
Q psy17126         51 TGNEVCEVGPGPGS----ITRSILNR-R----PARLVLIEKDPRFTPCLDMLAQA-------------------S---P-   98 (240)
Q Consensus        51 ~~~~VLEIG~GtG~----lt~~La~~-~----~~~V~avEid~~m~~~l~~~~~~-------------------~---~-   98 (240)
                      +..+|||+|||||.    +++.|++. +    ..+|+|+|+|+.|++.|++..-.                   .   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    66667665 2    13899999999999999885310                   0   0 


Q ss_pred             ---------CCeEEEEcccccccccccchhhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHhcc
Q psy17126         99 ---------CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus        99 ---------~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~~~  155 (240)
                               .++++.++|+.+.+++.            .+++|+|++ |.=.+...+...+++....
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~------------~~~fDlI~crnvliyf~~~~~~~vl~~~~  239 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV------------PGPFDAIFCRNVMIYFDKTTQEDILRRFV  239 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC------------CCCEEEEEECSSGGGSCHHHHHHHHHHHG
T ss_pred             ceeechhhcccCeEEecccCCCCCCc------------CCCeeEEEECCchHhCCHHHHHHHHHHHH
Confidence                     36899999998754431            135788887 4444456666666666544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.55  E-value=6.1e-08  Score=85.92  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=57.2

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeC----CcchHHHHHHHHhcCC-CCeEEEEc-cccccccccc
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK----DPRFTPCLDMLAQASP-CPVHFHLG-DVMSFTMQNM  116 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEi----d~~m~~~l~~~~~~~~-~~v~vi~~-D~~~~~~~~~  116 (240)
                      +.+...+.++.+|||+|||+|.+|..++++  ++|+|||+    ++.++..+.  .+..+ ++++++++ |+..++.   
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~---  146 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPP---  146 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCC---
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCc---
Confidence            444433567899999999999999999987  58999999    554432111  11111 56999999 8876531   


Q ss_pred             chhhhcccccCCCCceEEEecCCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                                  .++|+|+++.+.+
T Consensus       147 ------------~~fD~V~sd~~~~  159 (305)
T 2p41_A          147 ------------ERCDTLLCDIGES  159 (305)
T ss_dssp             ------------CCCSEEEECCCCC
T ss_pred             ------------CCCCEEEECCccc
Confidence                        3589999998865

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.48  E-value=9.2e-07  Score=79.43  Aligned_cols=100  Identities=11%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ..+++..++....+|+|||||+|.++..++++.+ .+++..|. |.+++.++++.... .++++++.+|+.+.+++.   
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~---  244 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE---  244 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC---
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCC---
Confidence            4456666667778999999999999999999864 57888887 78999988765432 378999999997644322   


Q ss_pred             hhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                                 ...+++.+.-++.+.+-..++|.+..
T Consensus       245 -----------~D~~~~~~vlh~~~d~~~~~iL~~~~  270 (353)
T 4a6d_A          245 -----------ADLYILARVLHDWADGKCSHLLERIY  270 (353)
T ss_dssp             -----------CSEEEEESSGGGSCHHHHHHHHHHHH
T ss_pred             -----------ceEEEeeeecccCCHHHHHHHHHHHH
Confidence                       23567777777777776666666543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.48  E-value=4.7e-07  Score=81.67  Aligned_cols=95  Identities=15%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      +..+++.+. ..+..+|||||||+|.++..++++.+ .+++++|+ +.+++.+++     .++++++.+|+.+ +++.  
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~p~--  259 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-----FPGVTHVGGDMFK-EVPS--  259 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTT-CCCC--
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----cCCeEEEeCCcCC-CCCC--
Confidence            345666665 66788999999999999999998753 68999999 888766542     2689999999987 5432  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                                  ...+++++.-++.+.+...++|.+..
T Consensus       260 ------------~D~v~~~~vlh~~~d~~~~~~L~~~~  285 (364)
T 3p9c_A          260 ------------GDTILMKWILHDWSDQHCATLLKNCY  285 (364)
T ss_dssp             ------------CSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             ------------CCEEEehHHhccCCHHHHHHHHHHHH
Confidence                        22344455555677666556665543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.46  E-value=2.2e-07  Score=76.63  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             HHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         42 KIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        42 ~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      .+++.+. ..++.+|||||||+|.++..++    .+|+|+|+++.              +++++++|+.++++++     
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~-----  113 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLED-----  113 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCT-----
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCC-----
Confidence            3444443 3567899999999999998772    58999999988              4668899998865432     


Q ss_pred             hcccccCCCCceEEEecCCCCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                              +++|.|+++..++.
T Consensus       114 --------~~fD~v~~~~~l~~  127 (215)
T 2zfu_A          114 --------ESVDVAVFCLSLMG  127 (215)
T ss_dssp             --------TCEEEEEEESCCCS
T ss_pred             --------CCEeEEEEehhccc
Confidence                    36899999877553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.46  E-value=5.4e-07  Score=81.18  Aligned_cols=93  Identities=15%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             HHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ..+++... +.++.+|||||||+|.++..++++.+ .+++++|+ +.|++.+++     .++++++.+|+.+ +++.   
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~---  267 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----LSGIEHVGGDMFA-SVPQ---  267 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTT-CCCC---
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----cCCCEEEeCCccc-CCCC---
Confidence            45566664 66778999999999999999999863 58899999 888876653     2569999999987 4332   


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                                  +|+|+++-. .+++.+...+++....
T Consensus       268 ------------~D~v~~~~~lh~~~d~~~~~~l~~~~  293 (372)
T 1fp1_D          268 ------------GDAMILKAVCHNWSDEKCIEFLSNCH  293 (372)
T ss_dssp             ------------EEEEEEESSGGGSCHHHHHHHHHHHH
T ss_pred             ------------CCEEEEecccccCCHHHHHHHHHHHH
Confidence                        476666554 4566665555555443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.45  E-value=4.2e-07  Score=82.07  Aligned_cols=92  Identities=16%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             HHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         41 DKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        41 ~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ..+++.+. ..+..+|||||||+|.++..++++.+ .+++++|+ +.+++.+++     .++++++.+|+.+ +++.   
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~p~---  261 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-----FSGVEHLGGDMFD-GVPK---  261 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTT-CCCC---
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-----cCCCEEEecCCCC-CCCC---
Confidence            34444444 56678999999999999999999753 68999999 888766542     2689999999986 4332   


Q ss_pred             hhhcccccCCCCceEEEec-CCCCCCHHHHHHHHHhc
Q psy17126        119 EDRRRDWSEGLPGIRIIGN-LPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsN-lPY~Iss~il~~ll~~~  154 (240)
                                 . |+|+.+ .-++.+.+...++|.+.
T Consensus       262 -----------~-D~v~~~~vlh~~~~~~~~~~l~~~  286 (368)
T 3reo_A          262 -----------G-DAIFIKWICHDWSDEHCLKLLKNC  286 (368)
T ss_dssp             -----------C-SEEEEESCGGGBCHHHHHHHHHHH
T ss_pred             -----------C-CEEEEechhhcCCHHHHHHHHHHH
Confidence                       2 555554 44456666555555544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.38  E-value=2.5e-07  Score=89.51  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             CCCEEEEECCchhHHHHHHH---hhCCC--eEEEEeCCcchHHHHHHHHh--cCCCCeEEEEcccccccccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPGSITRSIL---NRRPA--RLVLIEKDPRFTPCLDMLAQ--ASPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La---~~~~~--~V~avEid~~m~~~l~~~~~--~~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      .+..|+|||||+|.|....+   +++..  +|+|||.++ |+..+++...  .++++|++++||+.++++++        
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPE--------  427 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPE--------  427 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSS--------
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCc--------
Confidence            34579999999999954444   43322  789999997 5556655433  34588999999999988764        


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                            +.|+|||-+=
T Consensus       428 ------KVDIIVSEwM  437 (637)
T 4gqb_A          428 ------KADIIVSELL  437 (637)
T ss_dssp             ------CEEEEECCCC
T ss_pred             ------ccCEEEEEcC
Confidence                  5799998653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.37  E-value=1.1e-06  Score=80.77  Aligned_cols=87  Identities=13%  Similarity=0.062  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCc------hhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPG------PGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDV  108 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~G------tG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~  108 (240)
                      ....+++++.+.. +..+|||||||      +|..+..+++.  ..++|+|||+++.|.        ....+++++++|+
T Consensus       203 ~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa  273 (419)
T 3sso_A          203 TPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQ  273 (419)
T ss_dssp             HHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCT
T ss_pred             HHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecc
Confidence            3566667766543 46899999999      77777777765  247999999999983        1237899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++++...+..       ..++||+|+++.-
T Consensus       274 ~dlpf~~~l~~-------~d~sFDlVisdgs  297 (419)
T 3sso_A          274 NDAEFLDRIAR-------RYGPFDIVIDDGS  297 (419)
T ss_dssp             TCHHHHHHHHH-------HHCCEEEEEECSC
T ss_pred             cccchhhhhhc-------ccCCccEEEECCc
Confidence            98776421110       0147899999864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.34  E-value=2.7e-06  Score=74.98  Aligned_cols=67  Identities=15%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             CCCCCCEEEEECC------chhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEE-EEcccccccccccch
Q psy17126         48 GTITGNEVCEVGP------GPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHF-HLGDVMSFTMQNMFS  118 (240)
Q Consensus        48 ~~~~~~~VLEIG~------GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~v-i~~D~~~~~~~~~~~  118 (240)
                      .+.++.+|||+||      |+|.  ..+++..  .++|+|+|+++. +           .++++ +++|+.+.++.    
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----------~~v~~~i~gD~~~~~~~----  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----------SDADSTLIGDCATVHTA----  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----------CSSSEEEESCGGGCCCS----
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----------CCCEEEEECccccCCcc----
Confidence            5678999999999      6687  3344442  269999999998 1           35888 99999876542    


Q ss_pred             hhhcccccCCCCceEEEecCCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                                +++|+|++|++.+.
T Consensus       122 ----------~~fD~Vvsn~~~~~  135 (290)
T 2xyq_A          122 ----------NKWDLIISDMYDPR  135 (290)
T ss_dssp             ----------SCEEEEEECCCCCC
T ss_pred             ----------CcccEEEEcCCccc
Confidence                      25899999976443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.32  E-value=1.7e-06  Score=68.94  Aligned_cols=89  Identities=24%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHcCCCCCCEEEEECCchh-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126         36 EPRLTDKIVRNAGTITGNEVCEVGPGPG-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~  114 (240)
                      +..+++.|.+..  .++.+|||||||+| ..+..|++.....|+|+|+++..++              ++..|+.+..++
T Consensus        22 ~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------------~v~dDiF~P~~~   85 (153)
T 2k4m_A           22 WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------------IVRDDITSPRME   85 (153)
T ss_dssp             HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------------EECCCSSSCCHH
T ss_pred             HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------------eEEccCCCCccc
Confidence            556777776665  35679999999999 6999999732468999999998765              788999875432


Q ss_pred             ccchhhhcccccCCCCceEE-EecCCCCCCHHHHHHHHHh
Q psy17126        115 NMFSEDRRRDWSEGLPGIRI-IGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~V-vsNlPY~Iss~il~~ll~~  153 (240)
                       +.           ..+|+| --|||--+-.+++ ++...
T Consensus        86 -~Y-----------~~~DLIYsirPP~El~~~i~-~lA~~  112 (153)
T 2k4m_A           86 -IY-----------RGAALIYSIRPPAEIHSSLM-RVADA  112 (153)
T ss_dssp             -HH-----------TTEEEEEEESCCTTTHHHHH-HHHHH
T ss_pred             -cc-----------CCcCEEEEcCCCHHHHHHHH-HHHHH
Confidence             11           246888 6799988877764 44443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.31  E-value=1e-06  Score=78.72  Aligned_cols=83  Identities=12%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccccc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      .+.++.+|||||||+|.++..++++. ..+++++|+ +.|++.+++     ..+++++.+|+.+ +++            
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~p------------  245 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFT-SIP------------  245 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTT-CCC------------
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----CCCcEEEeccccC-CCC------------
Confidence            34567899999999999999999875 368999999 999877653     1459999999976 432            


Q ss_pred             CCCCceEEEecCC-CCCCHHHHHHHHH
Q psy17126        127 EGLPGIRIIGNLP-FNVSTPLIIKWIQ  152 (240)
Q Consensus       127 ~~~~~~~VvsNlP-Y~Iss~il~~ll~  152 (240)
                         .+|+|+++-. ++++.+...+++.
T Consensus       246 ---~~D~v~~~~~lh~~~d~~~~~~l~  269 (352)
T 1fp2_A          246 ---NADAVLLKYILHNWTDKDCLRILK  269 (352)
T ss_dssp             ---CCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             ---CccEEEeehhhccCCHHHHHHHHH
Confidence               2466666544 4466654334443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.31  E-value=9.5e-07  Score=77.37  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             HHHHHHcCC-CCCCEEEEECCch--hHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126         41 DKIVRNAGT-ITGNEVCEVGPGP--GSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT  112 (240)
Q Consensus        41 ~~iv~~~~~-~~~~~VLEIG~Gt--G~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~  112 (240)
                      .+.++.+.. .....|||||||+  |..+..++.+ . ..+|++||.|+.|++.+++++.... .+++++++|+.+.+
T Consensus        67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPA  144 (277)
T ss_dssp             HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHH
T ss_pred             HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChh
Confidence            334444432 2346899999997  3344444443 2 3799999999999999998775432 47999999998853

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.31  E-value=1.3e-06  Score=76.72  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      ....++..+++... .+++.|||++||+|.++..++..+ .+++|+|+++.+++.+++++..
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHH
Confidence            35678899998877 688999999999999999999875 7999999999999999987754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.28  E-value=1.5e-06  Score=77.54  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHh--cCCCCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQ--ASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~--~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      ...+++..++.++.+|||||||+|.++..++++.+ .+++++|+ +.++.  +++..  ...++++++.+|+.+ +++  
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p--  246 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP--  246 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC--
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC--
Confidence            34567777778889999999999999999999753 57899999 44444  22221  123679999999962 222  


Q ss_pred             chhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                                   .+|+|+++-- ++.+.+...+++.+..
T Consensus       247 -------------~~D~v~~~~vlh~~~d~~~~~~L~~~~  273 (348)
T 3lst_A          247 -------------HADVHVLKRILHNWGDEDSVRILTNCR  273 (348)
T ss_dssp             -------------CCSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             -------------CCcEEEEehhccCCCHHHHHHHHHHHH
Confidence                         2566665544 4567665455555443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.28  E-value=1.1e-06  Score=78.69  Aligned_cols=90  Identities=14%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             HHHHHc--CCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         42 KIVRNA--GTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        42 ~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .+++..  .+.++.+|||||||+|.++..++++.+ .+++++|+ +.+++.+++    . .+++++.+|+.+ +++    
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~d~~~-~~~----  250 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N-ENLNFVGGDMFK-SIP----  250 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C-SSEEEEECCTTT-CCC----
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C-CCcEEEeCccCC-CCC----
Confidence            344444  344668999999999999999999853 58999999 788765542    2 469999999987 443    


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                                 .+|+|+++.. ++++.+...+++..
T Consensus       251 -----------~~D~v~~~~vlh~~~d~~~~~~l~~  275 (358)
T 1zg3_A          251 -----------SADAVLLKWVLHDWNDEQSLKILKN  275 (358)
T ss_dssp             -----------CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             -----------CceEEEEcccccCCCHHHHHHHHHH
Confidence                       2566666655 44666544444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.18  E-value=2.2e-06  Score=83.49  Aligned_cols=96  Identities=18%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             CCEEEEECCchhHHHHHHHhhC--------------CCeEEEEeCCcchHHHHHHHH-hcCCCCeEEEEccccccccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR--------------PARLVLIEKDPRFTPCLDMLA-QASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~--------------~~~V~avEid~~m~~~l~~~~-~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +..|||||||+|.|+...+...              ..+|+|||.++..+..++... ..+.++|+++++|+.++.++.-
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            4689999999999975332211              239999999997776666543 3455789999999999876310


Q ss_pred             chhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                        .      ....+.|+|||-+- |.....+....|....
T Consensus       490 --~------~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~  521 (745)
T 3ua3_A          490 --D------RGFEQPDIIVSELLGSFGDNELSPECLDGVT  521 (745)
T ss_dssp             --H------TTCCCCSEEEECCCBTTBGGGSHHHHHHTTG
T ss_pred             --c------CCCCcccEEEEeccccccchhccHHHHHHHH
Confidence              0      01146799999887 4443444444554443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.10  E-value=5.8e-06  Score=74.22  Aligned_cols=101  Identities=21%  Similarity=0.216  Sum_probs=76.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      |.+-|-+++.+++.+.+.++..++|..||.|.-|..++++.  .++|+|+|.|+.+++.++ ++  ..++++++++++.+
T Consensus        39 ~~H~pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           39 YKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSA  115 (347)
T ss_dssp             ---CCTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGG
T ss_pred             CCcccccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHH
Confidence            44456678889999999999999999999999999999873  379999999999999884 33  24789999999988


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                      +.  +....   .++.  +++|.|+.||.|  ||+
T Consensus       116 l~--~~L~~---~g~~--~~vDgILfDLGV--SS~  141 (347)
T 3tka_A          116 LG--EYVAE---RDLI--GKIDGILLDLGV--SSP  141 (347)
T ss_dssp             HH--HHHHH---TTCT--TCEEEEEEECSC--CHH
T ss_pred             HH--HHHHh---cCCC--CcccEEEECCcc--CHH
Confidence            63  22221   1121  247999999875  553

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.10  E-value=9.5e-06  Score=73.73  Aligned_cols=85  Identities=15%  Similarity=0.257  Sum_probs=63.2

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      +.+|.+|||+||++|..|..+++++ ++|+|||+.+ |-..+..     .++|+++++|+.++....             
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~-l~~~l~~-----~~~V~~~~~d~~~~~~~~-------------  268 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP-MAQSLMD-----TGQVTWLREDGFKFRPTR-------------  268 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC-CCHHHHT-----TTCEEEECSCTTTCCCCS-------------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh-cChhhcc-----CCCeEEEeCccccccCCC-------------
Confidence            4689999999999999999999995 7999999864 4343331     378999999998876432             


Q ss_pred             CCceEEEecCCCCCCH--HHHHHHHHh
Q psy17126        129 LPGIRIIGNLPFNVST--PLIIKWIQA  153 (240)
Q Consensus       129 ~~~~~VvsNlPY~Iss--~il~~ll~~  153 (240)
                      .++|.|||.+-.+.+.  .++.+|+..
T Consensus       269 ~~~D~vvsDm~~~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          269 SNISWMVCDMVEKPAKVAALMAQWLVN  295 (375)
T ss_dssp             SCEEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             CCcCEEEEcCCCChHHhHHHHHHHHhc
Confidence            3689999988655432  234455553

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.03  E-value=1.8e-05  Score=66.17  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMS  110 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~  110 (240)
                      +++...+.+...+  .+..+|||||||  .-|..+++...++|++||.|++..+.++++++..    .++++++.+|+.+
T Consensus        16 v~~~~~~~L~~~l--~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           16 MPPAEAEALRMAY--EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             SCHHHHHHHHHHH--HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CCHHHHHHHHHHh--hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            4444444333322  356799999985  6777777742479999999999999999987654    3579999999875


Q ss_pred             c
Q psy17126        111 F  111 (240)
Q Consensus       111 ~  111 (240)
                      .
T Consensus        92 ~   92 (202)
T 3cvo_A           92 T   92 (202)
T ss_dssp             B
T ss_pred             h
Confidence            4

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.93  E-value=8.9e-06  Score=73.69  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=73.1

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC-------CCCeEE
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS-------PCPVHF  103 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~-------~~~v~v  103 (240)
                      .|.++.......+..+++++|++|||+++|+|.=|..|+..+. +.|+|+|+++.-+..+++++.+.       ..++.+
T Consensus       129 d~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          129 EYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             SEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             chhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence            3433333334455567889999999999999999999998753 58999999999888888876543       257899


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ...|+.+++.  ..          .+.||.|+...|=.
T Consensus       209 ~~~D~~~~~~--~~----------~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          209 TSWDGRKWGE--LE----------GDTYDRVLVDVPCT  234 (359)
T ss_dssp             ECCCGGGHHH--HS----------TTCEEEEEEECCCC
T ss_pred             EeCchhhcch--hc----------cccCCEEEECCccC
Confidence            9999887531  11          14689999988854

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.73  E-value=7.6e-05  Score=64.08  Aligned_cols=60  Identities=10%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      .+..+++.+++... .+++.|||..||+|+.+..+.+.+ .+++|+|+++..++.+++++..
T Consensus       197 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHh
Confidence            45678888988875 688999999999999999998875 7999999999999999987753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.71  E-value=9.2e-05  Score=66.04  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      +.+|+|+.||.|.++..+...+...|.++|+|+..++..+.+....   .   ++|+.++....+            ..+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~---~---~~Di~~~~~~~~------------~~~   72 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK---P---EGDITQVNEKTI------------PDH   72 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC---C---BSCGGGSCGGGS------------CCC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC---C---cCCHHHcCHhhC------------CCC
Confidence            4689999999999999999887667999999999999998876421   1   689988754332            247


Q ss_pred             eEEEecCCCC
Q psy17126        132 IRIIGNLPFN  141 (240)
Q Consensus       132 ~~VvsNlPY~  141 (240)
                      |+|++.+|++
T Consensus        73 D~l~~gpPCQ   82 (327)
T 2c7p_A           73 DILCAGFPCQ   82 (327)
T ss_dssp             SEEEEECCCT
T ss_pred             CEEEECCCCC
Confidence            9999999964

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.66  E-value=5.2e-05  Score=67.95  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             CEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      .+|+|+.||.|.++..+...+  ...|.++|+|+..++..+.|..    +..++++|+.++...++ ..         ..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----~~~~~~~Di~~~~~~~~-~~---------~~   68 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEF-DR---------LS   68 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHH-HH---------HC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----ccccccCCHHHccHhHc-Cc---------CC
Confidence            479999999999999999886  3479999999999999887653    34578999998754332 11         14


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      +|+|++++|
T Consensus        69 ~D~l~~gpP   77 (343)
T 1g55_A           69 FDMILMSPP   77 (343)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEEcCC
Confidence            799999999

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.64  E-value=0.00028  Score=62.18  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc-----C-CCCeEEEEcccccccccccchhhhc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA-----S-PCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~-----~-~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      ....+||=||-|.|..++.+++.. ..+|+.||+|+.+++.+++.+..     + .++++++.+|+.++= ...      
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l-~~~------  154 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV-NQT------  154 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-SCS------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-hhc------
Confidence            345799999999999999999864 37999999999999999885421     1 378999999998752 221      


Q ss_pred             ccccCCCCceEEEecCC
Q psy17126        123 RDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlP  139 (240)
                           ..++|+||..++
T Consensus       155 -----~~~yDvIi~D~~  166 (294)
T 3o4f_A          155 -----SQTFDVIISDCT  166 (294)
T ss_dssp             -----SCCEEEEEESCC
T ss_pred             -----cccCCEEEEeCC
Confidence                 146899998875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.57  E-value=3.1e-05  Score=61.65  Aligned_cols=67  Identities=13%  Similarity=0.014  Sum_probs=50.4

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW  125 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~  125 (240)
                      .+++.+|.+|||||||+               +++|+++.|++.++++..   .+++++++|+.++++..+ +       
T Consensus         7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~~~~~~~-~-------   60 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQLLQSAH-K-------   60 (176)
T ss_dssp             TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGGGGGGCC-C-------
T ss_pred             ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhcCccccC-C-------
Confidence            34678999999999996               239999999999987643   359999999998764211 1       


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                        .+++|.|+++.-.
T Consensus        61 --~~~fD~V~~~~~l   73 (176)
T 2ld4_A           61 --ESSFDIILSGLVP   73 (176)
T ss_dssp             --SSCEEEEEECCST
T ss_pred             --CCCEeEEEECChh
Confidence              1468999997553

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.54  E-value=0.00015  Score=65.90  Aligned_cols=78  Identities=15%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCce
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI  132 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~  132 (240)
                      .+|+|+-||.|.++..+...+...|.|+|+|+..++..+.|.    ++..++++|+.+++..++...     ......+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~----~~~~~~~~DI~~~~~~~~~~~-----~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF----PRSLHVQEDVSLLNAEIIKGF-----FKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC----TTSEEECCCGGGCCHHHHHHH-----HCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC----CCCceEecChhhcCHHHHHhh-----cccCCCee
Confidence            479999999999999999887556789999999998888754    357889999998865443110     00124689


Q ss_pred             EEEecCC
Q psy17126        133 RIIGNLP  139 (240)
Q Consensus       133 ~VvsNlP  139 (240)
                      +|++.+|
T Consensus        74 ~i~ggpP   80 (376)
T 3g7u_A           74 GIIGGPP   80 (376)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9999999

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.54  E-value=6.3e-05  Score=65.61  Aligned_cols=88  Identities=6%  Similarity=-0.103  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +..|.+...+.++.+|||+|||+|..+..++.+ +...|+|+++.-++...... ....+.++..+++++....+.    
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~~ii~~~~~~dv~~l~----  137 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGWNIITFKDKTDIHRLE----  137 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTGGGEEEECSCCTTTSC----
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCCCeEEEeccceehhcC----
Confidence            344555555678899999999999999988875 34688999988665111100 001112555566665322221    


Q ss_pred             hhhcccccCCCCceEEEecCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                               +.++|+|++++-.+
T Consensus       138 ---------~~~~DlVlsD~apn  151 (277)
T 3evf_A          138 ---------PVKCDTLLCDIGES  151 (277)
T ss_dssp             ---------CCCCSEEEECCCCC
T ss_pred             ---------CCCccEEEecCccC
Confidence                     14689999998666

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.47  E-value=2.3e-05  Score=68.72  Aligned_cols=82  Identities=18%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      .+..+||+=||||.++..+++.+ .+++.||.++..+..++++++. ..+++++++|+.+. +..+.+.        +.+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~-L~~l~~~--------~~~  159 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSK-LNALLPP--------PEK  159 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHH-HHHHCSC--------TTS
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHH-HHHhcCC--------CCC
Confidence            35678999999999999999964 8999999999999999988754 47899999997653 2222111        135


Q ss_pred             ceEEEecCCCCCC
Q psy17126        131 GIRIIGNLPFNVS  143 (240)
Q Consensus       131 ~~~VvsNlPY~Is  143 (240)
                      ++.|+--|||...
T Consensus       160 fdLVfiDPPYe~k  172 (283)
T 2oo3_A          160 RGLIFIDPSYERK  172 (283)
T ss_dssp             CEEEEECCCCCST
T ss_pred             ccEEEECCCCCCC
Confidence            8999999999863

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.32  E-value=0.00016  Score=63.20  Aligned_cols=88  Identities=10%  Similarity=0.031  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +..|.+...+.++.+|||+|||+|..+..++.. +..+|+|+|+...+...... ....+.++.....++.-..+.    
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~l~----  153 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFNME----  153 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGGSC----
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhhcC----
Confidence            344555556778899999999999999998864 34689999998764221110 011122333333332111111    


Q ss_pred             hhhcccccCCCCceEEEecCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                               +.++|+|+|.+-.+
T Consensus       154 ---------~~~~DvVLSDmApn  167 (282)
T 3gcz_A          154 ---------VIPGDTLLCDIGES  167 (282)
T ss_dssp             ---------CCCCSEEEECCCCC
T ss_pred             ---------CCCcCEEEecCccC
Confidence                     14689999998877

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.29  E-value=0.00035  Score=63.56  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=61.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-----C----CCCeEEEEcccccccccccchhhh
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-----S----PCPVHFHLGDVMSFTMQNMFSEDR  121 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-----~----~~~v~vi~~D~~~~~~~~~~~~~~  121 (240)
                      +..+||=||-|.|...+.+++....+|+.||+|+.+++.+++....     +    .++++++.+|+.++ +.+....  
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f-l~~~~~~--  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV-LKRYAKE--  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH-HHHHHHH--
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH-HHhhhhc--
Confidence            4589999999999999999987667999999999999999985421     1    14689999999764 2211111  


Q ss_pred             cccccCCCCceEEEecCC
Q psy17126        122 RRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       122 ~~~~~~~~~~~~VvsNlP  139 (240)
                            ..++|+||..++
T Consensus       282 ------~~~yDvIIvDl~  293 (381)
T 3c6k_A          282 ------GREFDYVINDLT  293 (381)
T ss_dssp             ------TCCEEEEEEECC
T ss_pred             ------cCceeEEEECCC
Confidence                  146899998875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.18  E-value=0.00038  Score=59.61  Aligned_cols=92  Identities=13%  Similarity=0.042  Sum_probs=63.4

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEc-cccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLG-DVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~-D~~~~~~~~~  116 (240)
                      +..|.+...++++.+|+|+||++|..+..++.. ++.+|+|+|+-..=.+.-+ ..+.++ +.++++.+ |+..++.   
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~~---  142 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLPP---  142 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCCC---
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecCC---
Confidence            455666667789999999999999999977765 3468999998654221000 012233 67999999 9855432   


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCHHHH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI  147 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il  147 (240)
                                  .++|.|++.+--.-++|.+
T Consensus       143 ------------~~~DtllcDIgeSs~~~~v  161 (267)
T 3p8z_A          143 ------------EKCDTLLCDIGESSPSPTV  161 (267)
T ss_dssp             ------------CCCSEEEECCCCCCSCHHH
T ss_pred             ------------ccccEEEEecCCCCCChhh
Confidence                        2578999988665555553

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.06  E-value=0.0019  Score=56.75  Aligned_cols=78  Identities=18%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCe--EEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPAR--LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~--V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      ...-+|+|+-||.|.++..+...+...  |.++|+|+..++..+.+.    ++..++.+|+.+++..++- .     +  
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~----~~~~~~~~DI~~i~~~~i~-~-----~--   81 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH----QGKIMYVGDVRSVTQKHIQ-E-----W--   81 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT----TTCEEEECCGGGCCHHHHH-H-----T--
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC----CCCceeCCChHHccHHHhc-c-----c--
Confidence            456789999999999999998876333  699999999988877653    3456889999988654431 1     1  


Q ss_pred             CCCceEEEecCCC
Q psy17126        128 GLPGIRIIGNLPF  140 (240)
Q Consensus       128 ~~~~~~VvsNlPY  140 (240)
                       +..|++++.+|.
T Consensus        82 -~~~Dll~ggpPC   93 (295)
T 2qrv_A           82 -GPFDLVIGGSPC   93 (295)
T ss_dssp             -CCCSEEEECCCC
T ss_pred             -CCcCEEEecCCC
Confidence             357999999984

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.97  E-value=0.0022  Score=56.27  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126         54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR  133 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (240)
                      +|||+=||.|.++..+-+.+...|.|+|+|+..++..+.|.   +  -+++.+|+.+++..++            ...|+
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~---~--~~~~~~DI~~i~~~~~------------~~~D~   64 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH---S--AKLIKGDISKISSDEF------------PKCDG   64 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC---C--SEEEESCGGGCCGGGS------------CCCSE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC---C--CCcccCChhhCCHhhC------------CcccE
Confidence            69999999999999998876556789999999999888754   2  3678999998875543            24689


Q ss_pred             EEecCC
Q psy17126        134 IIGNLP  139 (240)
Q Consensus       134 VvsNlP  139 (240)
                      +++.+|
T Consensus        65 l~ggpP   70 (331)
T 3ubt_Y           65 IIGGPP   70 (331)
T ss_dssp             EECCCC
T ss_pred             EEecCC
Confidence            999998

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.97  E-value=0.0013  Score=60.19  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             CCCCCEEEEECCchhHHHHHHH-hhC--CCeEEEEeCCcchHHHHHHHHhcC----C-CCeEEEEccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSIL-NRR--PARLVLIEKDPRFTPCLDMLAQAS----P-CPVHFHLGDVMS  110 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La-~~~--~~~V~avEid~~m~~~l~~~~~~~----~-~~v~vi~~D~~~  110 (240)
                      +.+++.|+|||++.|..|..++ +..  .++|+|+|.++...+.++++.+.+    . +++++++.-+-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            4688999999999999999988 443  269999999999999999987652    2 678888766544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.90  E-value=0.00079  Score=57.99  Aligned_cols=62  Identities=21%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             CCCCEEEEECCchhHHHHHHHhh-------CC------CeEEEEeCCc--------------chHHHHHHHHhc------
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNR-------RP------ARLVLIEKDP--------------RFTPCLDMLAQA------   96 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~-------~~------~~V~avEid~--------------~m~~~l~~~~~~------   96 (240)
                      .+..+|||||+|+|..+..++..       .+      .+++++|.++              .+.+.++++.+.      
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35579999999999998876653       22      3899999987              344455655443      


Q ss_pred             ------CC---CCeEEEEcccccc
Q psy17126         97 ------SP---CPVHFHLGDVMSF  111 (240)
Q Consensus        97 ------~~---~~v~vi~~D~~~~  111 (240)
                            +.   .+++++.||+.+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~  162 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINEL  162 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHH
T ss_pred             chhheeccCCceEEEEEECcHHHH
Confidence                  11   3578999999874

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.89  E-value=0.0016  Score=58.16  Aligned_cols=73  Identities=10%  Similarity=0.039  Sum_probs=57.0

Q ss_pred             CEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      -+|+|+-||.|.++..+...+.  ..|.|+|+|+..++..+.|.    +...++++|+.+++..++- .         ..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~----~~~~~~~~DI~~~~~~~~~-~---------~~   69 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF----PETNLLNRNIQQLTPQVIK-K---------WN   69 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC----TTSCEECCCGGGCCHHHHH-H---------TT
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC----CCCceeccccccCCHHHhc-c---------CC
Confidence            3799999999999999988763  45889999999998888754    2345788999988754431 1         14


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      +|++++.+|
T Consensus        70 ~D~l~ggpP   78 (333)
T 4h0n_A           70 VDTILMSPP   78 (333)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEecCC
Confidence            689999998

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.86  E-value=0.0016  Score=57.96  Aligned_cols=73  Identities=11%  Similarity=0.036  Sum_probs=57.0

Q ss_pred             CCEEEEECCchhHHHHHHHhhCC--CeE-EEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRP--ARL-VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~--~~V-~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      .-+|+|+-||.|.++..+...+.  ..| .|+|+|+..++..+.|..   ..  ++++|+.+++..++- .         
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~---~~--~~~~DI~~~~~~~i~-~---------   74 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK---EE--VQVKNLDSISIKQIE-S---------   74 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC---CC--CBCCCTTTCCHHHHH-H---------
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC---CC--cccCChhhcCHHHhc-c---------
Confidence            45899999999999999988752  456 799999999998887653   22  678999988754431 1         


Q ss_pred             CCceEEEecCC
Q psy17126        129 LPGIRIIGNLP  139 (240)
Q Consensus       129 ~~~~~VvsNlP  139 (240)
                      ...|++++.+|
T Consensus        75 ~~~Dil~ggpP   85 (327)
T 3qv2_A           75 LNCNTWFMSPP   85 (327)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCCCEEEecCC
Confidence            14799999999

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.83  E-value=0.00048  Score=61.03  Aligned_cols=75  Identities=9%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      .+..++..+++... .+++.|||.-||+|+.+......+ .+.+|+|+++..++.+++++.........+++|+.++
T Consensus       237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            45678899988764 678999999999999998888774 7999999999999999987765444455566666554

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.38  E-value=0.003  Score=55.57  Aligned_cols=46  Identities=9%  Similarity=-0.065  Sum_probs=35.4

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcch
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRF   86 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m   86 (240)
                      ..|.+.--+.++.+|||+||++|..+..++++ +...|+|+|+...+
T Consensus        71 ~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~  117 (300)
T 3eld_A           71 RWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEG  117 (300)
T ss_dssp             HHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             HHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccc
Confidence            34444423467899999999999999999975 34689999997654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.36  E-value=0.002  Score=56.78  Aligned_cols=85  Identities=15%  Similarity=0.022  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEc-ccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLG-DVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~-D~~~~~~~~  115 (240)
                      -+..|.+...+.++.+|||+||++|..+..++.. ++.+|+|+|+-..=.+.-+ ..+.++ .-++++.+ |+..++.  
T Consensus        82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~--  158 (321)
T 3lkz_A           82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS--  158 (321)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC--
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC--
Confidence            3556666667788999999999999999977765 4468999998765110000 001122 33777777 7655432  


Q ss_pred             cchhhhcccccCCCCceEEEecCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                                   .++|.|++.+-
T Consensus       159 -------------~~~D~ivcDig  169 (321)
T 3lkz_A          159 -------------ECCDTLLCDIG  169 (321)
T ss_dssp             -------------CCCSEEEECCC
T ss_pred             -------------CCCCEEEEECc
Confidence                         14577777665

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.94  E-value=0.016  Score=51.26  Aligned_cols=61  Identities=15%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc---chHHHHHHHHhc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP---RFTPCLDMLAQA   96 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~---~m~~~l~~~~~~   96 (240)
                      -.+..+++.+++... .+++.|||.=||+|+.+......+ .+.+|+|+++   ..++.+++++..
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHH
Confidence            356789999998875 578999999999999999988875 7999999999   999998887643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.89  E-value=0.017  Score=52.32  Aligned_cols=84  Identities=14%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             HHHhCchhhhccCccccCCHH-------HHHHHHHHcCCCC-----CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcc
Q psy17126         18 IKLYKLRALKQLSQNFLFEPR-------LTDKIVRNAGTIT-----GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR   85 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~-------i~~~iv~~~~~~~-----~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~   85 (240)
                      +.+.|-.-..+|.+|-..+..       ++...++.+....     ..+|+|+|||+|..|..+...             
T Consensus         7 ~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~-------------   73 (374)
T 3b5i_A            7 LSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDF-------------   73 (374)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHH-------------
T ss_pred             cCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHH-------------
Confidence            334333333455555444433       3333444444432     578999999999999998764             


Q ss_pred             hHHHHHHHHhcC---CCCeEEEEccccccccc
Q psy17126         86 FTPCLDMLAQAS---PCPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        86 m~~~l~~~~~~~---~~~v~vi~~D~~~~~~~  114 (240)
                      +++.+++.....   .+.++++..|...-||.
T Consensus        74 ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn  105 (374)
T 3b5i_A           74 IVKHISKRFDAAGIDPPEFTAFFSDLPSNDFN  105 (374)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEEEEEECTTSCHH
T ss_pred             HHHHHHHHHhhcCCCCCceeEEecCCCccchH
Confidence            344444332211   25677777776665643

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.79  E-value=0.0096  Score=51.39  Aligned_cols=88  Identities=10%  Similarity=-0.011  Sum_probs=52.8

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCe---EEEEc-cccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPV---HFHLG-DVMSFTMQ  114 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v---~vi~~-D~~~~~~~  114 (240)
                      +..|-+.--++++.+|||+||++|.-+..++++. ...|.|..+..+. . ... ......++   ++.++ |+.+++  
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P-~~~~~~Gv~~i~~~~G~Df~~~~--  136 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEP-MLMQSYGWNIVTMKSGVDVFYKP--  136 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCC-CCCCSTTGGGEEEECSCCGGGSC--
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCC-CcccCCCceEEEeeccCCccCCC--
Confidence            3445555456789999999999999999998861 1344555544432 0 000 00000233   55557 998743  


Q ss_pred             ccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                                   +.++|+|+|.+-.+-..+
T Consensus       137 -------------~~~~DvVLSDMAPnSG~~  154 (269)
T 2px2_A          137 -------------SEISDTLLCDIGESSPSA  154 (269)
T ss_dssp             -------------CCCCSEEEECCCCCCSCH
T ss_pred             -------------CCCCCEEEeCCCCCCCcc
Confidence                         135799999886663333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=95.75  E-value=0.028  Score=48.98  Aligned_cols=60  Identities=10%  Similarity=-0.061  Sum_probs=45.8

Q ss_pred             CCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcc--------------------------hHHHHHHHHhcCC-
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPR--------------------------FTPCLDMLAQASP-   98 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~--------------------------m~~~l~~~~~~~~-   98 (240)
                      ...|||+|+..|.-+..++...      ..+|+++|....                          .++.++++.+..+ 
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            4589999999999998876531      468999997532                          3566777766543 


Q ss_pred             --CCeEEEEcccccc
Q psy17126         99 --CPVHFHLGDVMSF  111 (240)
Q Consensus        99 --~~v~vi~~D~~~~  111 (240)
                        ++++++.||+.++
T Consensus       187 ~~~~I~li~Gda~et  201 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDT  201 (282)
T ss_dssp             CSTTEEEEESCHHHH
T ss_pred             CcCceEEEEeCHHHH
Confidence              7899999999764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.66  E-value=0.058  Score=49.09  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=46.1

Q ss_pred             cccCCHHH--------HHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--------CCeEEEEeCCcchHHHHHH
Q psy17126         32 NFLFEPRL--------TDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--------PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        32 ~fl~d~~i--------~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--------~~~V~avEid~~m~~~l~~   92 (240)
                      .|.+.+.+        ...+++   .++....-.|+|+|+|+|.|+.-+++..        ..+++.||+|+.+.+.=++
T Consensus        50 DF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~  129 (387)
T 1zkd_A           50 DFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  129 (387)
T ss_dssp             -CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             CeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHH
Confidence            48888774        233333   2333334579999999999998776421        2389999999999876555


Q ss_pred             HHhcCCCCeEEE
Q psy17126         93 LAQASPCPVHFH  104 (240)
Q Consensus        93 ~~~~~~~~v~vi  104 (240)
                      .+... ++++++
T Consensus       130 ~L~~~-~~v~W~  140 (387)
T 1zkd_A          130 LLAGI-RNIHWH  140 (387)
T ss_dssp             HSTTC-SSEEEE
T ss_pred             HhcCC-CCeEEe
Confidence            44332 245544

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.58  E-value=0.012  Score=55.21  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=59.2

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc---chhhhcccc-cC
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM---FSEDRRRDW-SE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~---~~~~~~~~~-~~  127 (240)
                      .-+|+|+-||.|.++..+...+...|.++|+|+..++..+.+... .+...++++|+.++.....   ......... ..
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~-~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~  166 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC-DPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQH  166 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC-CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc-CCCcceeccchhhhhhccccccchhhHHhhhhhc
Confidence            368999999999999999887645689999999998888876421 1345678899988764221   000000000 00


Q ss_pred             CCCceEEEecCC---CCCCH
Q psy17126        128 GLPGIRIIGNLP---FNVST  144 (240)
Q Consensus       128 ~~~~~~VvsNlP---Y~Iss  144 (240)
                      .+..|++++.+|   |++..
T Consensus       167 ~~~~Dvl~gGpPCQ~FS~AG  186 (482)
T 3me5_A          167 IPEHDVLLAGFPCQPFSLAG  186 (482)
T ss_dssp             SCCCSEEEEECCCCCC----
T ss_pred             CCCCCEEEecCCCcchhhhC
Confidence            134789999998   66553

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.54  E-value=0.033  Score=42.60  Aligned_cols=119  Identities=17%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             CCEEEEECCch-hHHH-HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         52 GNEVCEVGPGP-GSIT-RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        52 ~~~VLEIG~Gt-G~lt-~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++|+=+|+|. |... ..|.+. ...|+++|.+++.++.+++      ..+.++.+|..+.+.-....         -.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~------~g~~~i~gd~~~~~~l~~a~---------i~   70 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE------RGVRAVLGNAANEEIMQLAH---------LE   70 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH------TTCEEEESCTTSHHHHHHTT---------GG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH------cCCCEEECCCCCHHHHHhcC---------cc
Confidence            46788999975 3332 333334 3699999999998877663      24788999987643211000         02


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhccccccccchh---h-hhHHHHHHHcCCCCCCCCCCCCHH
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHK---R-QLVVSLLERACVKPILRPYQLSVQ  189 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~---~-~~~~~~l~~~gi~~~~R~e~ls~~  189 (240)
                      ..+.||...|-....-.+...+....   ..+..+   . ....+.|.++|++.-..|+.....
T Consensus        71 ~ad~vi~~~~~~~~n~~~~~~a~~~~---~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~  131 (140)
T 3fwz_A           71 CAKWLILTIPNGYEAGEIVASARAKN---PDIEIIARAHYDDEVAYITERGANQVVMGEREIAR  131 (140)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHHHHHC---SSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHH
T ss_pred             cCCEEEEECCChHHHHHHHHHHHHHC---CCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHH
Confidence            35778877775444433333333321   111111   2 334456888998877766544333

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.34  E-value=0.049  Score=50.24  Aligned_cols=65  Identities=14%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             ccccCCHHH--------HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcchHHHHHHHHh
Q psy17126         31 QNFLFEPRL--------TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        31 Q~fl~d~~i--------~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~m~~~l~~~~~   95 (240)
                      -.|.+.+++        ...+++.......-.|+|+|+|+|.|..-++...      ..+++.||+|+.+.+.-++++.
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            469999874        2333332221124689999999999998776531      2489999999999877666544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.18  E-value=0.11  Score=39.22  Aligned_cols=118  Identities=11%  Similarity=0.030  Sum_probs=65.4

Q ss_pred             CCEEEEECCch-hH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         52 GNEVCEVGPGP-GS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        52 ~~~VLEIG~Gt-G~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ..+|+=+|+|. |. ++..|.+. ..+|+++|.+++.++.+++      ..+.++.+|..+.+.-...         ...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~---------~~~   69 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSKEKIELLED------EGFDAVIADPTDESFYRSL---------DLE   69 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH------TTCEEEECCTTCHHHHHHS---------CCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH------CCCcEEECCCCCHHHHHhC---------Ccc
Confidence            35788999965 22 23344444 3699999999987776653      2477889998764321100         012


Q ss_pred             CceEEEecCCCCCCHHH-HHHHHHhccccccccchh---h-hhHHHHHHHcCCCCCCCCCCCCHHH
Q psy17126        130 PGIRIIGNLPFNVSTPL-IIKWIQAISENLLFPKHK---R-QLVVSLLERACVKPILRPYQLSVQE  190 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~i-l~~ll~~~~~~~~~~~~~---~-~~~~~~l~~~gi~~~~R~e~ls~~~  190 (240)
                      ..|.||...| +....+ +...+.+.   . ....+   . ....+.+.++|++.-..|+.+.-..
T Consensus        70 ~~d~vi~~~~-~~~~n~~~~~~a~~~---~-~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~~~~  130 (141)
T 3llv_A           70 GVSAVLITGS-DDEFNLKILKALRSV---S-DVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQA  130 (141)
T ss_dssp             TCSEEEECCS-CHHHHHHHHHHHHHH---C-CCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHH
T ss_pred             cCCEEEEecC-CHHHHHHHHHHHHHh---C-CceEEEEEcChhHHHHHHHcCCCEEECHHHHHHHH
Confidence            4678888777 222222 22233322   1 11111   2 3344568899987666665444333

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.04  E-value=0.19  Score=44.98  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             HHHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +..+++.++++||-+|+|. |.++..+++.... +|++++.+++-++.+++
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            3556788999999999987 8889888885334 99999999988777753

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.02  E-value=0.17  Score=51.42  Aligned_cols=88  Identities=13%  Similarity=0.026  Sum_probs=58.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc----cccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM----QNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~----~~~~~~~~~~~~  125 (240)
                      ..-+++|+-||.|.++..|...+. ..|.|+|+|+..+...+.|.    ++..++.+|+.++.-    .++.. ......
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~----p~~~~~~~DI~~l~~~~~~~di~~-~~~~~l  613 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN----PGSTVFTEDCNILLKLVMAGETTN-SRGQRL  613 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC----TTSEEECSCHHHHHHHHHHTCSBC-TTCCBC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC----CCCccccccHHHHhhhccchhhhh-hhhhhc
Confidence            346899999999999999988763 36889999999998887653    456788888754310    00000 000011


Q ss_pred             cCCCCceEEEecCC---CCCC
Q psy17126        126 SEGLPGIRIIGNLP---FNVS  143 (240)
Q Consensus       126 ~~~~~~~~VvsNlP---Y~Is  143 (240)
                      ...+..|+|++.+|   |+..
T Consensus       614 p~~~~vDll~GGpPCQ~FS~a  634 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGFSGM  634 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTCCSS
T ss_pred             ccCCCeeEEEEcCCCcchhhh
Confidence            11235799999999   6554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.69  E-value=0.32  Score=44.32  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             CCEEEEECCch-hHHH-HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         52 GNEVCEVGPGP-GSIT-RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        52 ~~~VLEIG~Gt-G~lt-~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ..+|+=+|+|. |... ..|... ...|++||.|++.++.+++      ..+.++.||+.+.+.-.-.         +-.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~------~g~~vi~GDat~~~~L~~a---------gi~   67 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK------FGMKVFYGDATRMDLLESA---------GAA   67 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH------TTCCCEESCTTCHHHHHHT---------TTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh------CCCeEEEcCCCCHHHHHhc---------CCC
Confidence            45788888865 2222 233333 4689999999999888763      2367899999875431110         012


Q ss_pred             CceEEEecCCCCCCHHHHHHHHH
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ..+.||.-+|-.-.+-.+...+.
T Consensus        68 ~A~~viv~~~~~~~n~~i~~~ar   90 (413)
T 3l9w_A           68 KAEVLINAIDDPQTNLQLTEMVK   90 (413)
T ss_dssp             TCSEEEECCSSHHHHHHHHHHHH
T ss_pred             ccCEEEECCCChHHHHHHHHHHH
Confidence            45677776664333333333333

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=92.64  E-value=0.14  Score=46.65  Aligned_cols=43  Identities=16%  Similarity=-0.003  Sum_probs=35.6

Q ss_pred             CEEEEECCchhHHHHHHHhhC--CCe----EEEEeCCcchHHHHHHHHh
Q psy17126         53 NEVCEVGPGPGSITRSILNRR--PAR----LVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~--~~~----V~avEid~~m~~~l~~~~~   95 (240)
                      -+|+|+-||.|.++..+...+  ..-    |.++|+|+..+...+.+..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            589999999999999998764  133    8999999999988877653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=92.05  E-value=0.69  Score=40.94  Aligned_cols=102  Identities=15%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCC-cchHHHHHHHHhcC----------------------CCCeEEEEc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD-PRFTPCLDMLAQAS----------------------PCPVHFHLG  106 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid-~~m~~~l~~~~~~~----------------------~~~v~vi~~  106 (240)
                      .+...|+.+|||..+....|.... ..++-+|+| |++++.=++.+...                      ..+.+++-+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            355789999999999999998763 355666666 66666544443332                      267999999


Q ss_pred             cccccccc-ccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        107 DVMSFTMQ-NMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       107 D~~~~~~~-~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      |+.+.++. .+...   .+ ....+...|.-.+-+|.+..-...++.....
T Consensus       175 DL~d~~w~~~ll~~---~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~  221 (334)
T 1rjd_A          175 DLNDITETTRLLDV---CT-KREIPTIVISECLLCYMHNNESQLLINTIMS  221 (334)
T ss_dssp             CTTCHHHHHHHHHT---TC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHh---cC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHh
Confidence            99986542 11111   01 1112333444455567888777777765543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.68  E-value=0.48  Score=41.24  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             HHHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ..+....+.++++||=+|+|. |.++..+++....+|++++.+++-.+.+++
T Consensus       157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            344556788999999999986 999999998755699999999988887764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.61  E-value=0.32  Score=42.98  Aligned_cols=48  Identities=8%  Similarity=-0.007  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +.+.++++++||-+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            456788999999999987 8888888875334 79999999988887764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.37  E-value=0.58  Score=41.08  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +.++++++++||-+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            556788999999999986 8888888886444 89999999887777764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.34  E-value=0.28  Score=37.81  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=59.7

Q ss_pred             CCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         50 ITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        50 ~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      .++.+|+=+|+|. |......+.....+|+++|.++.-++.++.     ...+.++.+|..+.+.  +...    +.   
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-----~~g~~~~~~d~~~~~~--l~~~----~~---   82 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-----EFSGFTVVGDAAEFET--LKEC----GM---   82 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-----TCCSEEEESCTTSHHH--HHTT----TG---
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-----cCCCcEEEecCCCHHH--HHHc----Cc---
Confidence            3578999999875 333333333223699999999876543321     1235677788654221  1000    00   


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCCC
Q psy17126        129 LPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPYQ  185 (240)
Q Consensus       129 ~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e~  185 (240)
                      ...|.||...|..-....+..++........-+.... ....+.+.++|++ -..|+.
T Consensus        83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~  139 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICPAV  139 (155)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECHHH
T ss_pred             ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc-EEcHHH
Confidence            1357777776643323333333333111100111111 2223457778887 555543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.23  E-value=0.73  Score=40.84  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+..++++++++||-+|+|. |.++..+++....+|++++.+++-++.+++
T Consensus       186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34445788999999999986 888888888655689999999988888765

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=91.15  E-value=0.12  Score=46.88  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEccccccccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~~~~~  116 (240)
                      ..+|+|+|||+|..|..+...             +++.+++....     ..+.++++..|...-||..+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~-------------ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~l  109 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD-------------IVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSV  109 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH-------------HHHHHTCC----------CEEEEEEECCTTSCHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH-------------HHHHHHHHhhhcccCCCCCceEEEecCCCccchHHH
Confidence            578999999999999988875             23333222111     12457777777766555433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.07  E-value=0.67  Score=41.04  Aligned_cols=86  Identities=15%  Similarity=0.035  Sum_probs=56.8

Q ss_pred             CCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCCC
Q psy17126         52 GNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        52 ~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~~  129 (240)
                      ..+|+=+||| .|......+.. ...|+.+|++.+-++.++       ..+..+..|+.+.+ +.++.           .
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-------~~~~~~~~d~~d~~~l~~~~-----------~   76 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-------EFATPLKVDASNFDKLVEVM-----------K   76 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-------TTSEEEECCTTCHHHHHHHH-----------T
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-------ccCCcEEEecCCHHHHHHHH-----------h
Confidence            4689999996 45554444443 368999999977665543       34566777876532 12222           2


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      ..|+||+-+|++...++....++....
T Consensus        77 ~~DvVi~~~p~~~~~~v~~~~~~~g~~  103 (365)
T 3abi_A           77 EFELVIGALPGFLGFKSIKAAIKSKVD  103 (365)
T ss_dssp             TCSEEEECCCGGGHHHHHHHHHHHTCE
T ss_pred             CCCEEEEecCCcccchHHHHHHhcCcc
Confidence            468999999998877777667776554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.03  E-value=0.7  Score=40.38  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+..+.+.++++||=+|+|. |.++..+++....+|++++.+++-.+.+++
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            44556788999999999987 888888888655699999999998887765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=90.72  E-value=1.1  Score=39.42  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             CCCCCEEEEECC------chhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126         49 TITGNEVCEVGP------GPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED  120 (240)
Q Consensus        49 ~~~~~~VLEIG~------GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~  120 (240)
                      +..+++|||+|+      -+|+.  .+.+.++  +.|+++|+.+--.          ..+ .+++||..++..       
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s----------da~-~~IqGD~~~~~~-------  166 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS----------DAD-STLIGDCATVHT-------  166 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC----------SSS-EEEESCGGGEEE-------
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc----------CCC-eEEEcccccccc-------
Confidence            457899999996      67773  3333333  4999999986431          122 459999765332       


Q ss_pred             hcccccCCCCceEEEecCCCCCCH
Q psy17126        121 RRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                             +.++|+|+|-+-.+.|.
T Consensus       167 -------~~k~DLVISDMAPNtTG  183 (344)
T 3r24_A          167 -------ANKWDLIISDMYDPRTK  183 (344)
T ss_dssp             -------SSCEEEEEECCCCTTSC
T ss_pred             -------CCCCCEEEecCCCCcCC
Confidence                   14689999998777654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.48  E-value=0.8  Score=40.80  Aligned_cols=48  Identities=21%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      ..++++++++||-+|+|. |.++..+++.... +|++++.+++-++.+++
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            456788999999999977 8888899886444 79999999988877764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.40  E-value=0.96  Score=38.41  Aligned_cols=83  Identities=13%  Similarity=0.015  Sum_probs=55.8

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++.+|=-|.+.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+++|+.+.+ ...++... ...| 
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~-~~~~-   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRT-FETY-   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            47788888877664   445566664 79999999998877766655556678999999998754 22222211 1122 


Q ss_pred             CCCCceEEEecC
Q psy17126        127 EGLPGIRIIGNL  138 (240)
Q Consensus       127 ~~~~~~~VvsNl  138 (240)
                        ++.|.+|.|-
T Consensus        83 --G~iDiLVNNA   92 (254)
T 4fn4_A           83 --SRIDVLCNNA   92 (254)
T ss_dssp             --SCCCEEEECC
T ss_pred             --CCCCEEEECC
Confidence              4678888774

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.12  E-value=0.9  Score=37.42  Aligned_cols=84  Identities=12%  Similarity=0.052  Sum_probs=54.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-.+.+.+.....+.++.++.+|+.+.+ +..++... ...+ 
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRT-LAEF-   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            4678898897655   3456666664 69999999988777666555444567899999998753 12222111 0111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        85 --g~id~li~~Ag   95 (253)
T 3qiv_A           85 --GGIDYLVNNAA   95 (253)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35788888853

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.03  E-value=1.8  Score=30.73  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             CCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         52 GNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +.+|+=+|+  |.++..+    +..+..+|++++.++.-++.+.      ...+.++.+|+.+.+ +.+.+         
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~---------   67 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKAL---------   67 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHHT---------
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHHH---------
Confidence            467899998  4444433    3333268999999987665544      245778888876532 11211         


Q ss_pred             CCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126        127 EGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                        ...|.||.+.|+..+.+++....+.
T Consensus        68 --~~~d~vi~~~~~~~~~~~~~~~~~~   92 (118)
T 3ic5_A           68 --GGFDAVISAAPFFLTPIIAKAAKAA   92 (118)
T ss_dssp             --TTCSEEEECSCGGGHHHHHHHHHHT
T ss_pred             --cCCCEEEECCCchhhHHHHHHHHHh
Confidence              2468999999988776665555443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.83  E-value=1.4  Score=38.56  Aligned_cols=98  Identities=7%  Similarity=-0.003  Sum_probs=61.9

Q ss_pred             CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc----CCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA----SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~----~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ..|+++|||.=.....+..-...+|+=|| .|..++.-++.+..    ...+.+++.+|+.+ ++.+...   ..++...
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~---~~g~d~~  178 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALR---SAGFDPS  178 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHH---HTTCCTT
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHH---hccCCCC
Confidence            57999999999987777531125777777 58888877776653    23678999999988 5543211   1223222


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        129 LPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       129 ~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                      .+...+.-.+-+|++......++....
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~  205 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIG  205 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHH
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHH
Confidence            233444445556677766666665543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=89.75  E-value=0.099  Score=47.03  Aligned_cols=78  Identities=8%  Similarity=0.066  Sum_probs=45.3

Q ss_pred             HHHHhCchhhhccCccccCCHHHHHH-------HHHHc-C---CCCCCEEEEECCchhHHHHHHHhh-------------
Q psy17126         17 IIKLYKLRALKQLSQNFLFEPRLTDK-------IVRNA-G---TITGNEVCEVGPGPGSITRSILNR-------------   72 (240)
Q Consensus        17 ~~~~~~~~~~k~~gQ~fl~d~~i~~~-------iv~~~-~---~~~~~~VLEIG~GtG~lt~~La~~-------------   72 (240)
                      .+.+.|=.-..+|.+|=..+..++..       .+..+ .   ....-+|+|+||++|..|..+...             
T Consensus         6 ~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~   85 (359)
T 1m6e_X            6 VLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMG   85 (359)
T ss_dssp             HHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSS
T ss_pred             ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence            34444444455566665555544433       22221 1   123467999999999888765543             


Q ss_pred             --C-C-CeEEEEeCCcchHHHHHHHH
Q psy17126         73 --R-P-ARLVLIEKDPRFTPCLDMLA   94 (240)
Q Consensus        73 --~-~-~~V~avEid~~m~~~l~~~~   94 (240)
                        . + .+|+..|+-......+-+.+
T Consensus        86 ~~~~pe~~v~~nDLp~NDFntlF~~L  111 (359)
T 1m6e_X           86 RENSPEYQIFLNDLPGNDFNAIFRSL  111 (359)
T ss_dssp             CSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred             CCCCCceEEEecCCCchHHHHHHHhc
Confidence              1 1 46777887777766665443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.53  E-value=1.1  Score=39.26  Aligned_cols=49  Identities=27%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             HHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ++.++++++++||-+|+|. |.++..+++....+|++++.+++-.+.+++
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            3556788999999999986 888888888654679999999888777764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.48  E-value=0.87  Score=39.83  Aligned_cols=50  Identities=22%  Similarity=0.254  Sum_probs=41.0

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      .++.+.++++++||=+|+|+ |.++..+++.... +|++++.++.-.+.+++
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            44667888999999999987 8888888886444 89999999887777765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.43  E-value=1.3  Score=36.36  Aligned_cols=85  Identities=12%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.+ +..++... ...| 
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEI-KAEN-   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHTT-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH-HHHc-
Confidence            3567888886655   3455666664 69999999988777666555444578999999998753 22222211 1111 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.+|.|--+
T Consensus        81 --~~id~li~~Ag~   92 (247)
T 3lyl_A           81 --LAIDILVNNAGI   92 (247)
T ss_dssp             --CCCSEEEECCCC
T ss_pred             --CCCCEEEECCCC
Confidence              357888887643

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.25  E-value=1  Score=37.48  Aligned_cols=85  Identities=16%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.+||=.|++.|   .++..|++.+ .+|+.++.+..-++.+.+.....+.++.++.+|+.+.+ +..++... ...+ 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~-  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGV-LAAH-  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHH-HHhc-
Confidence            5678888887644   2344555554 68999999988776665555444577999999998754 12222110 0111 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.||.|--.
T Consensus       105 --g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 --GRCDVLVNNAGV  116 (262)
T ss_dssp             --SCCSEEEECCCC
T ss_pred             --CCCCEEEECCCc
Confidence              356888887543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.25  E-value=1.5  Score=36.60  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.+..-++.+.+.....+.++.++.+|+.+.+ ...++... ...| 
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDET-MKAY-   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence            5778999998765   3456666665 69999999987776665554444578999999998754 22222211 1112 


Q ss_pred             CCCCceEEEecC
Q psy17126        127 EGLPGIRIIGNL  138 (240)
Q Consensus       127 ~~~~~~~VvsNl  138 (240)
                        ++.|.+|.|-
T Consensus        87 --g~id~lv~nA   96 (264)
T 3ucx_A           87 --GRVDVVINNA   96 (264)
T ss_dssp             --SCCSEEEECC
T ss_pred             --CCCcEEEECC
Confidence              3578888875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.17  E-value=0.97  Score=37.59  Aligned_cols=84  Identities=15%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.....+.++.++.+|+.+.+ +..++... ...| 
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQI-DEKF-   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            4677888887654   2445566664 69999999988777666555444578999999998753 22222211 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus        82 --g~id~lv~nAg   92 (257)
T 3imf_A           82 --GRIDILINNAA   92 (257)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688887753

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=89.03  E-value=0.75  Score=48.00  Aligned_cols=88  Identities=11%  Similarity=0.015  Sum_probs=57.7

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc----cccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM----QNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~----~~~~~~~~~~~~  125 (240)
                      ..-+++|+-||.|.++..+...+. ..|.|+|+|+..++..+.|.    ++..++.+|+.++.-    .+.... ....+
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~----p~~~~~~~DI~~l~~~~~~gdi~~~-~~~~l  924 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN----PGTTVFTEDCNVLLKLVMAGEVTNS-LGQRL  924 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC----TTSEEECSCHHHHHHHHTTTCSBCS-SCCBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC----CCCcEeeccHHHHhHhhhccchhhh-hhhhc
Confidence            346899999999999999988753 35889999999998887653    345677787754310    000000 00011


Q ss_pred             cCCCCceEEEecCC---CCCC
Q psy17126        126 SEGLPGIRIIGNLP---FNVS  143 (240)
Q Consensus       126 ~~~~~~~~VvsNlP---Y~Is  143 (240)
                      ...+..|+|+|.+|   |+..
T Consensus       925 p~~~~vDvl~GGpPCQ~FS~a  945 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFSGM  945 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTCSS
T ss_pred             cccCccceEEecCCCcccccc
Confidence            11235799999998   6654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.93  E-value=1.3  Score=37.34  Aligned_cols=85  Identities=9%  Similarity=0.014  Sum_probs=55.4

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.....+.++.++.+|+.+.+ +..++... ...| 
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~-~~~~-  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQM-TGEL-  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence            5678998898755   3455666664 69999999988777666555445568999999998754 22222211 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.+|.|--.
T Consensus       108 --g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 --GGIDIAVCNAGI  119 (276)
T ss_dssp             --SCCSEEEECCCC
T ss_pred             --CCCCEEEECCCC
Confidence              357888887643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.84  E-value=2  Score=33.61  Aligned_cols=117  Identities=12%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             CCEEEEECCch-hHHH-HHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhcccccC
Q psy17126         52 GNEVCEVGPGP-GSIT-RSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWSE  127 (240)
Q Consensus        52 ~~~VLEIG~Gt-G~lt-~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~~  127 (240)
                      +++|+=+|+|. |... ..|.+. + .+|+++|.+++.++.+++      ..+.++.+|..+.+. ...        . +
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~------~g~~~~~gd~~~~~~l~~~--------~-~  102 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRS------EGRNVISGDATDPDFWERI--------L-D  102 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH------TTCCEEECCTTCHHHHHTB--------C-S
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH------CCCCEEEcCCCCHHHHHhc--------c-C
Confidence            56899999874 3322 333344 4 689999999987766553      235678888765321 111        0 0


Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPY  184 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e  184 (240)
                      ....|.||...|-.-....+...+.....-..-+.... ....+.+.+.|++.-..|+
T Consensus       103 ~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~  160 (183)
T 3c85_A          103 TGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIY  160 (183)
T ss_dssp             CCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHH
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchH
Confidence            02457777766632222223333333221000000111 2223457778877655553

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.75  E-value=1.4  Score=37.69  Aligned_cols=84  Identities=20%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.+||=.|++.|   .++..|++++ .+|++++.+..-++.+.+.+...+.++.++.+|+.+.+ +..++... ...+ 
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEA-FRLL-  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHhC-
Confidence            5778999998765   3456666665 69999999988777665554444568999999998754 22222111 0111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus       107 --g~id~lvnnAg  117 (301)
T 3tjr_A          107 --GGVDVVFSNAG  117 (301)
T ss_dssp             --SSCSEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=88.75  E-value=1.1  Score=39.50  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=39.0

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +..++.++++||-+|+|. |.++..+++.... +|++++.+++-++.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            446778999999999876 8888888886444 89999999988887764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.74  E-value=1.1  Score=39.31  Aligned_cols=50  Identities=24%  Similarity=0.185  Sum_probs=39.7

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+..++++++++||-+|+|. |.++..+++....+|++++.+++-++.+++
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            34446788999999999865 778888887534689999999888887765

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=88.65  E-value=1.4  Score=36.68  Aligned_cols=84  Identities=8%  Similarity=0.022  Sum_probs=54.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.++|=.|++.|   .++..|++.+ .+|+.++.+..-.+.+.+.+...+.++.++.+|+.+.+ ...++... ...| 
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAA-LDQF-   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence            4678888887665   2455666665 69999999987776665555445578999999998753 12222111 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus        88 --g~id~lv~nAg   98 (256)
T 3gaf_A           88 --GKITVLVNNAG   98 (256)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=88.27  E-value=0.56  Score=38.13  Aligned_cols=115  Identities=11%  Similarity=0.038  Sum_probs=62.3

Q ss_pred             EEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         54 EVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      +|+=+|+  |.++..+++.   ....|+++|.+++.++.+.+.     .++.++.+|+.+.+.-.  ..       +-..
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----~~~~~i~gd~~~~~~l~--~a-------~i~~   65 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----LKATIIHGDGSHKEILR--DA-------EVSK   65 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----SSSEEEESCTTSHHHHH--HH-------TCCT
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----cCCeEEEcCCCCHHHHH--hc-------Cccc
Confidence            3556675  5555555542   136899999999887765431     24778999998643211  00       0124


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126        131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPY  184 (240)
Q Consensus       131 ~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e  184 (240)
                      .+.||...|-......+............-+.... ....+.+..+|++.-..|+
T Consensus        66 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~  120 (218)
T 3l4b_C           66 NDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLT  120 (218)
T ss_dssp             TCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHH
Confidence            57788777654444334333333111000011111 3334457888987666654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=88.24  E-value=1.6  Score=36.80  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=52.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAA-VERF-   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence            4678999997655   3455666664 69999999987766665544444578999999998753 12222111 0112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus       100 --g~id~lv~nAg  110 (279)
T 3sju_A          100 --GPIGILVNSAG  110 (279)
T ss_dssp             --CSCCEEEECCC
T ss_pred             --CCCcEEEECCC
Confidence              35688888754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=88.24  E-value=1.2  Score=39.32  Aligned_cols=48  Identities=15%  Similarity=0.075  Sum_probs=39.0

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +...+.++++||=+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            446778999999999886 8888888876444 89999999988887764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.11  E-value=1.2  Score=39.30  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +...+.++++||=+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            446778999999999875 7888888886444 89999999988887764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=87.99  E-value=0.97  Score=39.84  Aligned_cols=48  Identities=17%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +...++++++||=+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            456788999999999976 7788888875334 89999999988887764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=87.97  E-value=1.5  Score=38.20  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             HHHHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+..+++.++++||-+|+  |.|..+..+++....+|++++.+++..+.+++
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            344557788999999998  67888888887544699999999887776654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.93  E-value=1.3  Score=33.78  Aligned_cols=118  Identities=10%  Similarity=0.032  Sum_probs=59.4

Q ss_pred             CCEEEEECCchhHHHHHHHhh---CCCeEEEEeCCc-chHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccC
Q psy17126         52 GNEVCEVGPGPGSITRSILNR---RPARLVLIEKDP-RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~-~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      ..+|+=+|+  |.++..+++.   ....|+++|.++ +.++.+....   ...+.++.+|+.+.+.  +...       +
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~--l~~a-------~   68 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSV--LKKA-------G   68 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHH--HHHH-------T
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHH--HHHc-------C
Confidence            346777776  5565555442   136899999984 5444444322   2458899999876432  1110       0


Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRP  183 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~  183 (240)
                      -...+.||.-.+..-..-.+............-+-... ....+.+..+|++.-..|
T Consensus        69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p  125 (153)
T 1id1_A           69 IDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSP  125 (153)
T ss_dssp             TTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred             hhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEcH
Confidence            02457777776654333333333333211000001111 222345678887744433

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.81  E-value=1.1  Score=39.50  Aligned_cols=48  Identities=13%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +...++++++||=+|+|. |.++..+++....+|++++.+++-++.+++
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence            456778999999999887 888888888655799999999887777764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.76  E-value=2.3  Score=31.12  Aligned_cols=115  Identities=13%  Similarity=0.037  Sum_probs=58.6

Q ss_pred             CCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccC
Q psy17126         52 GNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      +.+|+=+|+|.  ++..+    .+. ..+|+++|.+++.++.+++   .  ..+.++.+|..+.+.  +...       .
T Consensus         4 ~m~i~IiG~G~--iG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~---~--~~~~~~~~d~~~~~~--l~~~-------~   66 (140)
T 1lss_A            4 GMYIIIAGIGR--VGYTLAKSLSEK-GHDIVLIDIDKDICKKASA---E--IDALVINGDCTKIKT--LEDA-------G   66 (140)
T ss_dssp             -CEEEEECCSH--HHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH---H--CSSEEEESCTTSHHH--HHHT-------T
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhC-CCeEEEEECCHHHHHHHHH---h--cCcEEEEcCCCCHHH--HHHc-------C
Confidence            35788888754  44333    333 3689999999877665543   1  136677888764321  1000       0


Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPY  184 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e  184 (240)
                      -...|.||...|..-....+..+......- .-+.... ....+.+++.|++--..|+
T Consensus        67 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~v~~p~  123 (140)
T 1lss_A           67 IEDADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPE  123 (140)
T ss_dssp             TTTCSEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             cccCCEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHcCCCEEECHH
Confidence            024577777776532222333333332210 0000111 2334567888876555553

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=87.68  E-value=0.9  Score=39.52  Aligned_cols=50  Identities=12%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             HHHHcCCCCCCEEEEECCc--hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPG--PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~G--tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +.+.+.++++++||=+|+|  .|.++..+++....+|++++.+++-++.+++
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            3355678899999999986  7888888887544699999999988888775

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=87.48  E-value=1.5  Score=38.39  Aligned_cols=50  Identities=28%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             HHHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~~   93 (240)
                      ++.++++++++||=+|+|. |.++..+++.... .|++++.+++-.+.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4567888999999999987 8888888886444 499999999988888764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=87.48  E-value=1.2  Score=39.31  Aligned_cols=48  Identities=15%  Similarity=0.043  Sum_probs=38.6

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      +..+++++++||=+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            445778999999999876 7788888875334 89999999988888764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=87.11  E-value=1.8  Score=36.24  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC------------cchHHHHHHHHhcCCCCeEEEEccccccc-cc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD------------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQ  114 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~  114 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.+            .+-++.+.+.....+.++.++.+|+.+.+ +.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            5678999997655   3456666664 699999987            33333333333333578999999998753 22


Q ss_pred             ccchhhhcccccCCCCceEEEecCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++... ...|   +..|.+|.|--
T Consensus        91 ~~~~~~-~~~~---g~id~lv~nAg  111 (278)
T 3sx2_A           91 AALQAG-LDEL---GRLDIVVANAG  111 (278)
T ss_dssp             HHHHHH-HHHH---CCCCEEEECCC
T ss_pred             HHHHHH-HHHc---CCCCEEEECCC
Confidence            222211 1112   35788888754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.04  E-value=2.2  Score=36.13  Aligned_cols=84  Identities=10%  Similarity=-0.044  Sum_probs=53.5

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.+||=.|++.|.   ++..|++.+ .+|+.++.+..-++.+.+.+...+.++.++.+|+.+.+ ...++... ...| 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDL-VLKF-  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence            46788888976552   445566664 69999999987776665554444578999999998753 22222211 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus       104 --g~iD~lVnnAg  114 (283)
T 3v8b_A          104 --GHLDIVVANAG  114 (283)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35788887754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.03  E-value=2.9  Score=34.56  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             CCCEEEEECCc----hhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPG----PGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~G----tG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .+.+||=.|++    .|. ++..|++.+ .+|+.++.+....+.+.+.....+ .++.++.+|+.+.+ +..++... ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI-KE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH-HH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH-HH
Confidence            46788999965    443 566777775 699999999877777766555444 37999999998754 22222211 11


Q ss_pred             cccCCCCceEEEecCCC
Q psy17126        124 DWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY  140 (240)
                      .|   +..|.+|.|--+
T Consensus        84 ~~---g~id~li~~Ag~   97 (266)
T 3oig_A           84 QV---GVIHGIAHCIAF   97 (266)
T ss_dssp             HH---SCCCEEEECCCC
T ss_pred             Hh---CCeeEEEEcccc
Confidence            12   356888887543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=86.86  E-value=0.88  Score=36.11  Aligned_cols=46  Identities=20%  Similarity=0.094  Sum_probs=35.2

Q ss_pred             HcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHH
Q psy17126         46 NAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLD   91 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~   91 (240)
                      ...+.++++||-+|+  |.|..+..++.....+|++++.+++..+.++
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            356788999999994  6677777776643469999999988776654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=86.78  E-value=2.4  Score=34.89  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=51.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.++|=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~-~~~~-   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVAST-VEAL-   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence            4578888887654   3345555554 69999999977666554444333467899999998643 12222111 0112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        83 --g~id~lv~nAg   93 (247)
T 2jah_A           83 --GGLDILVNNAG   93 (247)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888753

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.71  E-value=2.5  Score=35.51  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=51.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC----------------cchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD----------------PRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid----------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.+                .+-++.+.+.....+.++.++.+|+.+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            5678999998766   3456666665 699999987                3333333333333457899999999875


Q ss_pred             c-ccccchhhhcccccCCCCceEEEecCC
Q psy17126        112 T-MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       112 ~-~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      + +..++... ...|   +..|.+|.|--
T Consensus        89 ~~v~~~~~~~-~~~~---g~id~lv~nAg  113 (286)
T 3uve_A           89 DALKAAVDSG-VEQL---GRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHH-HHHH---SCCCEEEECCC
T ss_pred             HHHHHHHHHH-HHHh---CCCCEEEECCc
Confidence            3 22222111 0112   35788888754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=86.50  E-value=2.2  Score=35.77  Aligned_cols=85  Identities=16%  Similarity=0.052  Sum_probs=52.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEcccccc-c-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSF-T-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~-~-~~~~~~~~~~~~  124 (240)
                      .+.+||=.|++.|   .++..|++++ .+|++++.+..-.+.+.+.+... +.++.++.+|+.+. . ...++... ...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~-~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFI-KTH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHH-HHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHH-HHh
Confidence            4678888887655   3455566664 69999999987665544433333 35799999999875 3 12221110 011


Q ss_pred             ccCCCCceEEEecCCC
Q psy17126        125 WSEGLPGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY  140 (240)
                      +   +..|.+|.|--.
T Consensus        89 ~---g~iD~lv~nAg~  101 (311)
T 3o26_A           89 F---GKLDILVNNAGV  101 (311)
T ss_dssp             H---SSCCEEEECCCC
T ss_pred             C---CCCCEEEECCcc
Confidence            1   357889988653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.13  E-value=2.6  Score=35.14  Aligned_cols=84  Identities=12%  Similarity=0.032  Sum_probs=51.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC------------cchHHHHHHHHhcCCCCeEEEEccccccc-cc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD------------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQ  114 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~  114 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.+            .+-++.+.......+.++.++.+|+.+.+ +.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            4678998898655   2445666664 699999987            44444444333344578999999998753 12


Q ss_pred             ccchhhhcccccCCCCceEEEecCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++... ...|   ++.|.+|.|--
T Consensus        88 ~~~~~~-~~~~---g~id~lv~nAg  108 (287)
T 3pxx_A           88 RELANA-VAEF---GKLDVVVANAG  108 (287)
T ss_dssp             HHHHHH-HHHH---SCCCEEEECCC
T ss_pred             HHHHHH-HHHc---CCCCEEEECCC
Confidence            222111 1112   35688888754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=86.09  E-value=2.2  Score=37.64  Aligned_cols=49  Identities=20%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             HHHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      ++...++++++||=+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4667888999999999987 8888888886444 89999999988877765

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=86.09  E-value=1.8  Score=36.45  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=52.4

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ ...++... ...| 
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAA-VDTW-   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence            3567888887654   2445566664 69999999987776665554444567889999998643 12222111 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        80 --g~iD~lVnnAG   90 (264)
T 3tfo_A           80 --GRIDVLVNNAG   90 (264)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35788888753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=86.01  E-value=2.2  Score=37.02  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             HHHHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+...++.++++||-+|+| .|.++..+++....+|++++.+++-++.+++
T Consensus       156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3444578899999999996 4888888887644699999999888777754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.92  E-value=2.3  Score=35.22  Aligned_cols=85  Identities=18%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             CCCEEEEECC-ch--hH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGP-GP--GS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~-Gt--G~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .+++||=.|+ |.  |. ++..|++++ .+|+.++.+..-++.+.+.+... ..++.++.+|+.+.+ +..++... ...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT-VEK   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH-HHH
Confidence            4678888887 54  43 556677775 69999999987766655544333 368999999998753 12222111 111


Q ss_pred             ccCCCCceEEEecCCC
Q psy17126        125 WSEGLPGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY  140 (240)
                      |   ++.|.+|.|--+
T Consensus        99 ~---g~id~li~~Ag~  111 (266)
T 3o38_A           99 A---GRLDVLVNNAGL  111 (266)
T ss_dssp             H---SCCCEEEECCCC
T ss_pred             h---CCCcEEEECCCc
Confidence            2   356888887643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.89  E-value=2.7  Score=35.71  Aligned_cols=83  Identities=17%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC------------cchHHHHHHHHhcCCCCeEEEEccccccc-cc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD------------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQ  114 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~  114 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.+            ++-++.+.+.....+.++.++.+|+.+.+ +.
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            5778999998766   2455666664 699999987            33333333333344578999999998753 12


Q ss_pred             ccchhhhcccccCCCCceEEEecC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      .++... ...|   +..|.+|.|-
T Consensus       106 ~~~~~~-~~~~---g~iD~lv~nA  125 (299)
T 3t7c_A          106 AAVDDG-VTQL---GRLDIVLANA  125 (299)
T ss_dssp             HHHHHH-HHHH---SCCCEEEECC
T ss_pred             HHHHHH-HHHh---CCCCEEEECC
Confidence            222211 0112   3568888775

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=85.87  E-value=3.6  Score=34.66  Aligned_cols=84  Identities=12%  Similarity=0.030  Sum_probs=51.9

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~  125 (240)
                      .+.++|=.|++.|.   ++..|++.+ .+|+.++. +++-++.+.+.....+.++.++.+|+.+.+- ..++... ...|
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAV-VAEF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHH-HHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-HHHc
Confidence            56788988976652   455666664 69999995 6555554444444445789999999987542 2222211 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         ++.|.+|.|--
T Consensus       106 ---g~iD~lvnnAg  116 (280)
T 4da9_A          106 ---GRIDCLVNNAG  116 (280)
T ss_dssp             ---SCCCEEEEECC
T ss_pred             ---CCCCEEEECCC
Confidence               35688888754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=85.80  E-value=1.2  Score=37.74  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=53.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ ...++... ...| 
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   83 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREG-AKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELA-VRRF-   83 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence            4678888887655   3455666664 69999999987766665544444578999999998753 12222111 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        84 --g~iD~lvnnAg   94 (280)
T 3tox_A           84 --GGLDTAFNNAG   94 (280)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.73  E-value=2.7  Score=34.79  Aligned_cols=84  Identities=12%  Similarity=0.022  Sum_probs=54.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.+||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++....    .
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~----~   80 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD----A   80 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH----H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH----h
Confidence            4678888888766   3456666665 69999999988777666555444578999999998753 222222110    0


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                      . +..|.+|.|--.
T Consensus        81 ~-g~id~lv~nAg~   93 (252)
T 3h7a_A           81 H-APLEVTIFNVGA   93 (252)
T ss_dssp             H-SCEEEEEECCCC
T ss_pred             h-CCceEEEECCCc
Confidence            1 356888877543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=85.67  E-value=1.8  Score=37.41  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHH
Q psy17126         45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLD   91 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~   91 (240)
                      +...+.++++||-.|+  |.|..+..++.....+|++++.+++.++.++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~  187 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK  187 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4567788999999998  7888888777754469999999988777664

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=85.66  E-value=3.1  Score=34.65  Aligned_cols=84  Identities=17%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CCCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+.+||=.|++. .++.    .|++.+ .+|++++.++.-.+.+.+.+...+.++.++.+|+.+.+ +..++... ...+
T Consensus        30 ~~k~vlITGasg-gIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGH-GIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV-KAEI  106 (272)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHH-HHHC
Confidence            467888888654 4444    444454 69999999987665554444444567999999998643 22222111 0111


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         +..|.||.|--+
T Consensus       107 ---g~iD~li~~Ag~  118 (272)
T 1yb1_A          107 ---GDVSILVNNAGV  118 (272)
T ss_dssp             ---CCCSEEEECCCC
T ss_pred             ---CCCcEEEECCCc
Confidence               356888887643

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.58  E-value=3.2  Score=34.79  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeC-------------CcchHHHHHHHHhcCCCCeEEEEccccccc-c
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEK-------------DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-M  113 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEi-------------d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~  113 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.             +++-++.+.+.....+.++.++.+|+.+.+ +
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            5778998998765   2455666665 69999998             444454444444444578999999998743 2


Q ss_pred             cccchhhhcccccCCCCceEEEecCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ..++... ...|   ++.|.+|.|--
T Consensus        93 ~~~~~~~-~~~~---g~id~lvnnAg  114 (280)
T 3pgx_A           93 RELVADG-MEQF---GRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHH-HHHH---CCCCEEEECCC
T ss_pred             HHHHHHH-HHHc---CCCCEEEECCC
Confidence            2222111 0112   35688888754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=85.55  E-value=1.7  Score=37.75  Aligned_cols=44  Identities=18%  Similarity=0.051  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEECCch-hHHHHHHHhhC--CCeEEEEeCCcchHHHHHH
Q psy17126         48 GTITGNEVCEVGPGP-GSITRSILNRR--PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        48 ~~~~~~~VLEIG~Gt-G~lt~~La~~~--~~~V~avEid~~m~~~l~~   92 (240)
                      .+ ++++||-+|+|. |.++..+++..  ..+|++++.+++-.+.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            77 899999999976 78888888764  4689999999888777764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.53  E-value=3.1  Score=35.03  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-.+.+.+.....+.++.++.+|+.+.+- ..++....  .+ 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~-  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAE--AI-  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHH--HH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHH--Hh-
Confidence            5678888887655   2445556664 699999999877666655444445789999999987542 22222110  01 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus       108 --g~iD~lvnnAg  118 (275)
T 4imr_A          108 --APVDILVINAS  118 (275)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688887754

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.50  E-value=3.1  Score=34.49  Aligned_cols=84  Identities=12%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV-VRDF-   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-HHHh-
Confidence            4678888887655   2344555554 69999999987665554444333467899999997643 11222111 0112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        83 --g~id~lv~nAg   93 (262)
T 1zem_A           83 --GKIDFLFNNAG   93 (262)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=85.40  E-value=3.2  Score=34.83  Aligned_cols=84  Identities=12%  Similarity=0.072  Sum_probs=50.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV-VERY-   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH-HHHh-
Confidence            4678898887654   2344555554 69999999987655544433333467899999997643 12222111 0111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.||.|--
T Consensus        98 --g~iD~lv~~Ag  108 (277)
T 2rhc_B           98 --GPVDVLVNNAG  108 (277)
T ss_dssp             --CSCSEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688887753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.39  E-value=1.1  Score=39.58  Aligned_cols=49  Identities=18%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             HHHcCCCCCCEEEEECCch-hHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPGP-GSITRSILNRRP-ARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~-~~V~avEid~~m~~~l~~   92 (240)
                      .+...+.++++||=+|+|. |.++..+++... .+|++++.+++-++.+++
T Consensus       186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3556778999999999985 888888887633 489999999988887764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.37  E-value=2.6  Score=35.32  Aligned_cols=84  Identities=8%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC---CeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~---~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.   ++.++.+|+.+.+ ...++... ..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV-TA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH-HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH-HH
Confidence            4678888897655   3455666665 6999999998776665554443332   7889999998753 12222211 01


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                      .|   ++.|.+|.|--
T Consensus        88 ~~---g~id~lv~nAg  100 (281)
T 3svt_A           88 WH---GRLHGVVHCAG  100 (281)
T ss_dssp             HH---SCCCEEEECCC
T ss_pred             Hc---CCCCEEEECCC
Confidence            11   35688887753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=85.33  E-value=1.7  Score=37.68  Aligned_cols=45  Identities=20%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             CCCCCCEEEEECCch-hHHHHHHHhhC-CCeEEEEeCCcchHHHHHH
Q psy17126         48 GTITGNEVCEVGPGP-GSITRSILNRR-PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        48 ~~~~~~~VLEIG~Gt-G~lt~~La~~~-~~~V~avEid~~m~~~l~~   92 (240)
                      .+.++++||=+|+|. |.++..+++.. ..+|++++.+++-.+.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            678899999999987 88888888753 5799999999988887764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=85.30  E-value=2.1  Score=37.19  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             HHHHcCCCCCCEEEEECCc--hhHHHHHHHhhC-CCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPG--PGSITRSILNRR-PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~G--tG~lt~~La~~~-~~~V~avEid~~m~~~l~~   92 (240)
                      .+....++++++||-+|+|  .|.++..+++.. ..+|++++.+++-.+.+++
T Consensus       162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3445678899999999998  677777777653 4699999999888777754

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=84.89  E-value=3.7  Score=33.85  Aligned_cols=83  Identities=12%  Similarity=0.029  Sum_probs=49.5

Q ss_pred             CCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcch--HHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         52 GNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRF--TPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        52 ~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m--~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      ++++|=.|++.|   .++..|++.+ .+|++++.++.-  ++.+.+.+...+.++.++.+|+.+.+ +..++... ...|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEA-AEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHh
Confidence            456777886654   3445566665 689999998765  44444333333467899999998643 22222211 0112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.+|.|--
T Consensus        80 ---g~iD~lv~nAg   90 (258)
T 3a28_C           80 ---GGFDVLVNNAG   90 (258)
T ss_dssp             ---TCCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               35688888764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=84.76  E-value=1.7  Score=37.27  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=38.7

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +.+.++++++||=+|+|. |.++..+++....+|++++ +++-.+.+++
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            556778999999999974 8888888876446999999 8888888775

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=84.71  E-value=2.6  Score=35.03  Aligned_cols=84  Identities=12%  Similarity=-0.015  Sum_probs=52.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.....+ .++.++.+|+.+.+ ...++... ...|
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA-VEEF   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH-HHHh
Confidence            4678888887654   2445555664 699999999877666555444433 57999999998753 12222111 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         ++.|.+|.|--
T Consensus        87 ---g~id~lvnnAg   97 (262)
T 3pk0_A           87 ---GGIDVVCANAG   97 (262)
T ss_dssp             ---SCCSEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               35688887753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=84.63  E-value=1.9  Score=37.26  Aligned_cols=46  Identities=22%  Similarity=0.220  Sum_probs=38.7

Q ss_pred             HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHH
Q psy17126         45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCL   90 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l   90 (240)
                      +...++++++||=+|+  |.|.++..+++....+|++++.+++-.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            6678889999999998  678888888876556999999998877766

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=84.59  E-value=3.8  Score=33.75  Aligned_cols=82  Identities=11%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             CEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126         53 NEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG  128 (240)
Q Consensus        53 ~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~  128 (240)
                      +++|=.|++.|   .++..|++.+ .+|++++.++.-.+.+.+.+...+.++.++.+|+.+.+ +..++... ...|   
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~---   77 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQA-RKTL---   77 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHHT---
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-HHHh---
Confidence            56777786544   3345555554 69999999877655544433333467889999988643 22222211 0112   


Q ss_pred             CCceEEEecCC
Q psy17126        129 LPGIRIIGNLP  139 (240)
Q Consensus       129 ~~~~~VvsNlP  139 (240)
                      +..|.+|.|--
T Consensus        78 g~id~lv~nAg   88 (256)
T 1geg_A           78 GGFDVIVNNAG   88 (256)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            35788888763

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.48  E-value=3.6  Score=34.39  Aligned_cols=84  Identities=13%  Similarity=0.016  Sum_probs=50.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC------------cchHHHHHHHHhcCCCCeEEEEccccccc-cc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD------------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQ  114 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~  114 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.+            .+-++...+.....+.++.++.+|+.+.+ ..
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            5678998998765   3455666665 699999987            23333333333344578999999998753 22


Q ss_pred             ccchhhhcccccCCCCceEEEecCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++... ...|   +..|.+|.|--
T Consensus        88 ~~~~~~-~~~~---g~id~lv~nAg  108 (281)
T 3s55_A           88 SFVAEA-EDTL---GGIDIAITNAG  108 (281)
T ss_dssp             HHHHHH-HHHH---TCCCEEEECCC
T ss_pred             HHHHHH-HHhc---CCCCEEEECCC
Confidence            222211 0112   35688887754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=84.45  E-value=2.7  Score=34.87  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.++.-.+.+.+.....  +.++.++.+|+.+.+ +..++... ...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT-TER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH-HHH
Confidence            4678888887655   3445556664 69999999876655444332221  357889999998743 22222211 011


Q ss_pred             ccCCCCceEEEecC
Q psy17126        125 WSEGLPGIRIIGNL  138 (240)
Q Consensus       125 ~~~~~~~~~VvsNl  138 (240)
                      |   +..|.+|.|-
T Consensus        90 ~---g~id~lv~nA  100 (267)
T 1iy8_A           90 F---GRIDGFFNNA  100 (267)
T ss_dssp             H---SCCSEEEECC
T ss_pred             c---CCCCEEEECC
Confidence            1   3568888875

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=84.43  E-value=2.6  Score=36.02  Aligned_cols=84  Identities=13%  Similarity=-0.016  Sum_probs=52.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.+..-++.+.+.+...+ .++.++.+|+.+.+ ...++... ...|
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV-VDAF  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH-HHHc
Confidence            4678888887655   2455666665 699999999877666655444433 57999999998753 12222111 0112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.+|.|--
T Consensus       118 ---g~iD~lvnnAg  128 (293)
T 3rih_A          118 ---GALDVVCANAG  128 (293)
T ss_dssp             ---SCCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               35688887753

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.39  E-value=2.6  Score=35.18  Aligned_cols=84  Identities=18%  Similarity=0.099  Sum_probs=52.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CCCCeEEEEcccccccc-cccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMSFTM-QNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+.. .+.++.++.+|+.+.+- ..++... ...|
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA-AEAF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-HHHc
Confidence            4678888887655   2445566664 6999999998776655443322 34679999999987542 2222111 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.+|.|--
T Consensus        97 ---g~id~lv~nAg  107 (266)
T 4egf_A           97 ---GGLDVLVNNAG  107 (266)
T ss_dssp             ---TSCSEEEEECC
T ss_pred             ---CCCCEEEECCC
Confidence               35688888753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=84.35  E-value=3.4  Score=34.29  Aligned_cols=83  Identities=10%  Similarity=0.004  Sum_probs=51.3

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEE-eCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLI-EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~av-Eid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .++++|=.|++.|.   ++..|++.+ .+|+.+ +.+....+.+.+.....+.++.++.+|+.+.+ ...++... ...|
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAA-ADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHh
Confidence            46789989987652   455666665 688888 66666655555444444577999999998753 22222211 1112


Q ss_pred             cCCCCceEEEecC
Q psy17126        126 SEGLPGIRIIGNL  138 (240)
Q Consensus       126 ~~~~~~~~VvsNl  138 (240)
                         ++.|.+|.|-
T Consensus        85 ---g~id~lv~nA   94 (259)
T 3edm_A           85 ---GEIHGLVHVA   94 (259)
T ss_dssp             ---CSEEEEEECC
T ss_pred             ---CCCCEEEECC
Confidence               3568888775

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=84.35  E-value=3.7  Score=34.31  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=50.5

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeC-------------CcchHHHHHHHHhcCCCCeEEEEccccccc-c
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEK-------------DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-M  113 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEi-------------d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~  113 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.             +..-++.+.+.....+.++.++.+|+.+.+ +
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            5678898897765   2455666665 69999998             444444433333334578999999998753 1


Q ss_pred             cccchhhhcccccCCCCceEEEecCC
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      ..++... ...|   ++.|.+|.|--
T Consensus        89 ~~~~~~~-~~~~---g~id~lvnnAg  110 (277)
T 3tsc_A           89 RKVVDDG-VAAL---GRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHH-HHHH---SCCCEEEECCC
T ss_pred             HHHHHHH-HHHc---CCCCEEEECCC
Confidence            2222110 0111   35788888764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=84.31  E-value=2.8  Score=34.13  Aligned_cols=83  Identities=12%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+.+||=.|++ |.++..    |++.+ .+|++++.++.-.+.+.+.+...+.++.++.+|+.+.+ +...+... ...|
T Consensus        10 ~~~~vlVtGas-ggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGAG-AGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFA-ISKL   86 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH-HHhc
Confidence            45678877754 555444    44444 69999999877655544444334467899999987643 22222110 0111


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.||.|--
T Consensus        87 ---~~~d~vi~~Ag   97 (255)
T 1fmc_A           87 ---GKVDILVNNAG   97 (255)
T ss_dssp             ---SSCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               24688887754

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=84.08  E-value=1.7  Score=36.56  Aligned_cols=84  Identities=14%  Similarity=0.088  Sum_probs=53.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-  101 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAG-ARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARL-DEQG-  101 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHC-
Confidence            4678888887654   2445566664 69999999987766655544444578999999998753 22222211 1111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus       102 --g~iD~lv~nAg  112 (271)
T 4ibo_A          102 --IDVDILVNNAG  112 (271)
T ss_dssp             --CCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35788888754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.94  E-value=4  Score=34.59  Aligned_cols=83  Identities=13%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcc-hHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPR-FTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~-m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.+.. ..+.+.+.....+.++.++.+|+.+.+ ...++... ...|
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQET-VRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc
Confidence            5678999997655   2445566664 69999998865 344444444444578999999998753 12222211 1112


Q ss_pred             cCCCCceEEEecC
Q psy17126        126 SEGLPGIRIIGNL  138 (240)
Q Consensus       126 ~~~~~~~~VvsNl  138 (240)
                         +..|.+|.|-
T Consensus       124 ---g~iD~lvnnA  133 (291)
T 3ijr_A          124 ---GSLNILVNNV  133 (291)
T ss_dssp             ---SSCCEEEECC
T ss_pred             ---CCCCEEEECC
Confidence               3568888874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=83.93  E-value=2.9  Score=34.83  Aligned_cols=85  Identities=12%  Similarity=0.045  Sum_probs=52.4

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|.   ++..|++++ .+|+.++. +....+.+.+.....+.++.++.+|+.+.+ ...++... ...+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI-VQSD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH-HHhc
Confidence            56788888887652   455666664 69999998 555555555544444578999999998743 12222111 0111


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         +..|.+|.|--+
T Consensus       106 ---g~id~li~nAg~  117 (271)
T 4iin_A          106 ---GGLSYLVNNAGV  117 (271)
T ss_dssp             ---SSCCEEEECCCC
T ss_pred             ---CCCCEEEECCCc
Confidence               356888887543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=83.92  E-value=1.9  Score=36.51  Aligned_cols=85  Identities=16%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|.+.|.   ++..|++.+ .+|+..+.+++-++.+.+.+...+.++..+.+|+.+.+ ...++... ...| 
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   84 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKL-DAEG-   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH-HHTT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH-HHHC-
Confidence            56778877876653   345566664 69999999988776665555445678899999998743 22222221 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.+|.|--.
T Consensus        85 --G~iDiLVNNAG~   96 (255)
T 4g81_D           85 --IHVDILINNAGI   96 (255)
T ss_dssp             --CCCCEEEECCCC
T ss_pred             --CCCcEEEECCCC
Confidence              567888888643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.75  E-value=2.8  Score=35.14  Aligned_cols=84  Identities=11%  Similarity=0.087  Sum_probs=50.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC---CeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~---~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.....+.   ++.++.+|+.+.+ +..++... ..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST-LK   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH-HH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH-HH
Confidence            4567888886554   3445555554 6999999998766555443333233   7899999998743 12222111 01


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                      .|   +..|.+|.|--
T Consensus        83 ~~---g~iD~lv~nAg   95 (280)
T 1xkq_A           83 QF---GKIDVLVNNAG   95 (280)
T ss_dssp             HH---SCCCEEEECCC
T ss_pred             hc---CCCCEEEECCC
Confidence            12   35688888764

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=83.58  E-value=5.1  Score=31.92  Aligned_cols=75  Identities=12%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCc----------------chHHHHHHHHhcCCC
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDP----------------RFTPCLDMLAQASPC   99 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~----------------~m~~~l~~~~~~~~~   99 (240)
                      +..+++.+..+.-.+| -|||+|-|.|..--.|.+..+ .+|+++|-.-                +.-+.+......++.
T Consensus        27 R~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~  105 (174)
T 3iht_A           27 RACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGA  105 (174)
T ss_dssp             HHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCC
Confidence            4556666666654454 699999999999999998764 7899999421                122233322223456


Q ss_pred             CeEEEEccccccc
Q psy17126        100 PVHFHLGDVMSFT  112 (240)
Q Consensus       100 ~v~vi~~D~~~~~  112 (240)
                      .+.+++.|+-.-+
T Consensus       106 ~a~LaHaD~G~g~  118 (174)
T 3iht_A          106 TASLVHADLGGHN  118 (174)
T ss_dssp             CEEEEEECCCCSC
T ss_pred             ceEEEEeecCCCC
Confidence            7888888876543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=83.54  E-value=2.2  Score=35.79  Aligned_cols=84  Identities=10%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.+..-.+.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~-  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVEST-LKEF-  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHH-HHHc-
Confidence            4678888886554   2445566664 69999999987766655544333467889999997643 22222211 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus       104 --g~iD~lvnnAg  114 (270)
T 3ftp_A          104 --GALNVLVNNAG  114 (270)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688888753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=83.45  E-value=2.9  Score=36.99  Aligned_cols=49  Identities=18%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             HHHcC-CCCCCEEEEECCch-hHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126         44 VRNAG-TITGNEVCEVGPGP-GSITRSILNRRP-ARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~-~~~~~~VLEIG~Gt-G~lt~~La~~~~-~~V~avEid~~m~~~l~~   92 (240)
                      +..++ +.++++||=+|+|. |.++..+++... .+|++++.+++-.+.+++
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            34556 78899999999774 777888888654 599999999887777764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=83.38  E-value=3.3  Score=35.61  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC------------cchHHHHHHHHhcCCCCeEEEEccccccc-cc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD------------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQ  114 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid------------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~  114 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.+            .+-++.+.+.....+.++.++.+|+.+.+ +.
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            5678888888665   3455666664 699999886            33333333333334578999999998743 22


Q ss_pred             ccchhhhcccccCCCCceEEEecCC
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .++... ...|   ++.|.+|.|--
T Consensus       124 ~~~~~~-~~~~---g~iD~lVnnAg  144 (317)
T 3oec_A          124 AVVDEA-LAEF---GHIDILVSNVG  144 (317)
T ss_dssp             HHHHHH-HHHH---SCCCEEEECCC
T ss_pred             HHHHHH-HHHc---CCCCEEEECCC
Confidence            222211 0112   35788888753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=83.26  E-value=2  Score=37.15  Aligned_cols=47  Identities=11%  Similarity=0.045  Sum_probs=38.3

Q ss_pred             HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHH
Q psy17126         45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLD   91 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~   91 (240)
                      +.+++.++++||-+|+  |.|.++..+++....+|++++.+++-++.++
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4467789999999997  7888888888764469999999987777665

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=83.07  E-value=4.3  Score=33.72  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CC-CCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SP-CPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~-~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+.. .+ .++.++.+|+.+.+ ...++... ...
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEAC-ERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH-HHH
Confidence            4678888898765   3455666664 6999999998776655543332 33 35899999998753 12222111 111


Q ss_pred             ccCCCCceEEEecCCC
Q psy17126        125 WSEGLPGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY  140 (240)
                      |   ++.|.+|.|--+
T Consensus        85 ~---g~id~lvnnAg~   97 (265)
T 3lf2_A           85 L---GCASILVNNAGQ   97 (265)
T ss_dssp             H---CSCSEEEECCCC
T ss_pred             c---CCCCEEEECCCC
Confidence            2   356888887643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=82.93  E-value=3.4  Score=34.54  Aligned_cols=84  Identities=13%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++. +....+.+.+.....+.++.++.+|+.+.+ +..++... ...|
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~-~~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAV-IERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHHc
Confidence            4678888887655   2445566664 68998887 555555554444444578999999998754 22222211 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         ++.|.+|.|--
T Consensus       105 ---g~id~lv~nAg  115 (269)
T 4dmm_A          105 ---GRLDVLVNNAG  115 (269)
T ss_dssp             ---SCCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               35688888753

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=82.76  E-value=5.5  Score=32.08  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=49.3

Q ss_pred             CCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-cCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         52 GNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        52 ~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++||=.|++.|   .++..|++.+ .+|+.++.+.+-++.+.+... ..+.++.++.+|+.+.+ +..++... ...+ 
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~-   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKV-LERF-   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-H-HHHH-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHH-HHhc-
Confidence            456777886544   2445555554 689999999876655544322 23468999999998753 22222110 0111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus        79 --g~id~li~~Ag   89 (235)
T 3l77_A           79 --GDVDVVVANAG   89 (235)
T ss_dssp             --SSCSEEEECCC
T ss_pred             --CCCCEEEECCc
Confidence              35688888754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=82.65  E-value=2.8  Score=36.47  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +...+.++++||=+|+  |.|.++..+++....+|++++.+++-.+.+++
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            4567789999999997  67888888888655799999999888877765

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=82.65  E-value=2.5  Score=36.35  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=51.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC----------cchHHHHHHHHhcCCCCeEEEEccccccc-cccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD----------PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNM  116 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid----------~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~  116 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.++.+          ....+.+.+.+...+.++.++.+|+.+.+ +..+
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            5778888887655   3455666664 699999987          44454444444444567889999998753 1222


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +... ...|   +..|.+|.|--.
T Consensus       105 ~~~~-~~~~---g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTA-VETF---GGLDVLVNNAGI  124 (322)
T ss_dssp             HHHH-HHHH---SCCCEEECCCCC
T ss_pred             HHHH-HHHc---CCCCEEEECCCC
Confidence            2211 1112   356888887643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=82.55  E-value=4  Score=33.66  Aligned_cols=84  Identities=11%  Similarity=-0.011  Sum_probs=49.2

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMA-VNLH-   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            4677887776544   2344555554 69999999876655444333333467889999987643 12222110 0112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        90 --g~iD~lv~~Ag  100 (260)
T 2zat_A           90 --GGVDILVSNAA  100 (260)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              35688887753

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=82.54  E-value=1  Score=44.10  Aligned_cols=56  Identities=7%  Similarity=0.008  Sum_probs=44.6

Q ss_pred             CCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         52 GNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        52 ~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      ..+|||+=||.|.++.-+...+      ..-+.|+|+|+.+++..+.|.    ++..+++.|+.++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh----p~~~~~~~di~~i  273 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH----PQTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC----TTSEEEESCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC----CCCceecCcHHHh
Confidence            4689999999999998887653      136789999999999888653    4567888888655

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=82.40  E-value=3.4  Score=33.63  Aligned_cols=83  Identities=18%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             CCCEEEEECCchhHHH----HHHHhhCCCeEEEEeCC-cchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSIT----RSILNRRPARLVLIEKD-PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt----~~La~~~~~~V~avEid-~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .+.+||=.|++ |.++    ..|++++ .+|++++.+ +.-++.+.+.....+.++.++.+|+.+.+ +...+... ...
T Consensus         6 ~~k~vlVTGas-ggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~   82 (258)
T 3afn_B            6 KGKRVLITGSS-QGIGLATARLFARAG-AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEF-VAK   82 (258)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCC-CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH-HHH
Confidence            35678877764 4444    4444554 699999988 66555544433333467899999998743 22222211 011


Q ss_pred             ccCCCCceEEEecCC
Q psy17126        125 WSEGLPGIRIIGNLP  139 (240)
Q Consensus       125 ~~~~~~~~~VvsNlP  139 (240)
                      |   +..|.||.|--
T Consensus        83 ~---g~id~vi~~Ag   94 (258)
T 3afn_B           83 F---GGIDVLINNAG   94 (258)
T ss_dssp             H---SSCSEEEECCC
T ss_pred             c---CCCCEEEECCC
Confidence            1   24688887754

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=82.20  E-value=5.8  Score=33.47  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=40.5

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEe-CCcchHHHHHHHHh-cCCCCeEEEEccccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIE-KDPRFTPCLDMLAQ-ASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avE-id~~m~~~l~~~~~-~~~~~v~vi~~D~~~~~  112 (240)
                      .+.++|=.|++.|   .++..|++.+ .+|+.++ .++.-++.+.+.+. ..+.++.++.+|+.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            4567887776654   2344555554 6999999 88766555544332 33467999999998754

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=82.20  E-value=3.8  Score=33.80  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|++++.++.-++.+.+..... +.++.++.+|+.+.+ +..++... ...|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESV-RSSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHc
Confidence            4678888887654   3445555554 69999999876555443332221 457899999998743 22222111 0111


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.+|.|--
T Consensus        84 ---g~id~lv~~Ag   94 (263)
T 3ai3_A           84 ---GGADILVNNAG   94 (263)
T ss_dssp             ---SSCSEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               35688888764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=82.19  E-value=4  Score=33.39  Aligned_cols=84  Identities=13%  Similarity=0.052  Sum_probs=48.5

Q ss_pred             CCEEEEECCchh---HHHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         52 GNEVCEVGPGPG---SITRSILNRRPARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        52 ~~~VLEIG~GtG---~lt~~La~~~~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++||=.|++.|   .++..|++.+ .+|++++. ++.-.+.+.+.+...+.++.++.+|+.+.+ +..++... ...| 
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-   80 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQT-VDVF-   80 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence            567777776544   2344555554 69999998 766555444433333467889999988643 22222211 0112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        +..|.+|.|--+
T Consensus        81 --g~id~lv~nAg~   92 (246)
T 2uvd_A           81 --GQVDILVNNAGV   92 (246)
T ss_dssp             --SCCCEEEECCCC
T ss_pred             --CCCCEEEECCCC
Confidence              356888887643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.04  E-value=4  Score=34.65  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=53.1

Q ss_pred             CCCEEEEECCc----hh-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPG----PG-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~G----tG-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .+++||=.|++    .| .++..|++.+ .+|+.++.+....+.+.+..... +++.++.+|+.+.+ +..++... ...
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~-~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVL-AEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHH-HHH
Confidence            46789999974    44 2566677765 69999999987766665544332 45788999998753 22222211 111


Q ss_pred             ccCCCCceEEEecCCC
Q psy17126        125 WSEGLPGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY  140 (240)
                      |   +..|.+|.|--+
T Consensus       106 ~---g~iD~lVnnAG~  118 (296)
T 3k31_A          106 W---GSLDFVVHAVAF  118 (296)
T ss_dssp             H---SCCSEEEECCCC
T ss_pred             c---CCCCEEEECCCc
Confidence            2   357888888643

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=81.97  E-value=3.2  Score=34.98  Aligned_cols=84  Identities=12%  Similarity=0.091  Sum_probs=50.6

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcc-------hHHHHHHHHhcCCCCeEEEEccccccc-ccccchh
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPR-------FTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSE  119 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~-------m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~  119 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.+..       -++.+.+.....+.++.++.+|+.+.+ ...++..
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            4678898998766   3556666664 69999998875       233333322233467999999998753 1222221


Q ss_pred             hhcccccCCCCceEEEecCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlP  139 (240)
                      . ...|   ++.|.+|.|--
T Consensus        87 ~-~~~~---g~id~lvnnAg  102 (285)
T 3sc4_A           87 T-VEQF---GGIDICVNNAS  102 (285)
T ss_dssp             H-HHHH---SCCSEEEECCC
T ss_pred             H-HHHc---CCCCEEEECCC
Confidence            1 1112   35788888753

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=81.89  E-value=2.9  Score=34.52  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=.|++.|   .++..|++.+ .+|++++.++.-++.+.+.....+.++.++.+|+.+.+ +..++.......| 
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~-   81 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ-   81 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC-
Confidence            3567787776544   2334455554 69999999876655544433222457889999998743 1222221100001 


Q ss_pred             CCCCceEEEecC
Q psy17126        127 EGLPGIRIIGNL  138 (240)
Q Consensus       127 ~~~~~~~VvsNl  138 (240)
                        ++.|.+|.|-
T Consensus        82 --g~id~lvnnA   91 (260)
T 2qq5_A           82 --GRLDVLVNNA   91 (260)
T ss_dssp             --TCCCEEEECC
T ss_pred             --CCceEEEECC
Confidence              4578888886

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=81.78  E-value=0.62  Score=41.70  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             HcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCe--eeEeccC
Q psy17126        174 RACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGL--YEYTLED  215 (240)
Q Consensus       174 ~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~~p~~--~~~~~~~  215 (240)
                      ..|+  +.|||+||++||++|++++.. |-=.|.+  ..||+.+
T Consensus       308 ~~~i--~~R~e~Ls~e~f~~L~~~~~~-wpfkp~~~~d~~~~~~  348 (353)
T 1i4w_A          308 KDLL--KKCPIDLTNDEFIYLTKLFME-WPFKPDILMDFVDMYQ  348 (353)
T ss_dssp             CTTT--SSCGGGCCHHHHHHHHHHHHT-CSSCC-----------
T ss_pred             hcCc--ccChhhCCHHHHHHHHHHHHh-CCCCCceehhhhhhhh
Confidence            4566  599999999999999999865 7777777  3455443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=81.75  E-value=3.8  Score=34.75  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             CCCCEEEEECCch----h-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGP----G-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~Gt----G-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      -.+++||=.|++.    | .++..|++.+ .+|+.++.++...+.+++..... +++.++.+|+.+.+ +..++... ..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~-~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADAASIDAVFETL-EK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHHH-HH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHH-HH
Confidence            3578899999763    3 3566777775 68999999876655555543332 46889999998753 22222211 11


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                      .|   +..|.+|.|--
T Consensus       106 ~~---g~iD~lVnnAG  118 (293)
T 3grk_A          106 KW---GKLDFLVHAIG  118 (293)
T ss_dssp             HT---SCCSEEEECCC
T ss_pred             hc---CCCCEEEECCc
Confidence            12   35788888754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=81.57  E-value=3  Score=35.41  Aligned_cols=44  Identities=11%  Similarity=0.070  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         49 TITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        49 ~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ++++++||-+|+  |.|.++..+++....+|++++.+++-.+.+++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            778999999998  67888888887654699999999887777654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=81.55  E-value=5.3  Score=33.54  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=49.5

Q ss_pred             CCCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEccccccc-ccccchhh
Q psy17126         51 TGNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFT-MQNMFSED  120 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~-~~~~~~~~  120 (240)
                      .+.+||=.|++ |.++.    .|++.+ .+|++++.+..-.+.+.+.+..     .+.++.++.+|+.+.+ +..++...
T Consensus        17 ~~k~vlVTGas-ggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTGGA-TGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence            46789988865 44444    445554 6999999987665554443322     2467999999998643 22222211


Q ss_pred             hcccccCCCCceEEEecCC
Q psy17126        121 RRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       121 ~~~~~~~~~~~~~VvsNlP  139 (240)
                       ...|   ++.|.||.|--
T Consensus        95 -~~~~---g~id~li~~Ag  109 (303)
T 1yxm_A           95 -LDTF---GKINFLVNNGG  109 (303)
T ss_dssp             -HHHH---SCCCEEEECCC
T ss_pred             -HHHc---CCCCEEEECCC
Confidence             0111   34688887754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.55  E-value=4.3  Score=33.47  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=52.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--C-CCeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--P-CPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~-~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .+.++|=.|++.|   .++..|++.+ .+|+.++.++.-++.+.+.+...  . .++.++.+|+.+.+ ...++... ..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI-HQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH-HH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH-HH
Confidence            4678888888765   3556666775 69999999987766655433221  2 57889999998753 12222111 01


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                      .|   ++.|.+|.|--
T Consensus        84 ~~---g~iD~lvnnAg   96 (250)
T 3nyw_A           84 KY---GAVDILVNAAA   96 (250)
T ss_dssp             HH---CCEEEEEECCC
T ss_pred             hc---CCCCEEEECCC
Confidence            12   35788888764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=81.02  E-value=5.2  Score=32.33  Aligned_cols=85  Identities=19%  Similarity=0.132  Sum_probs=48.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEE-eCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLI-EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~av-Eid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+.+||=.|++.|   .++..|++++ .+|+++ ..++.-.+.+.+.....+.++.++.+|+.+.+ +...+... ...|
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~   81 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTA-MDAF   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH-HHhc
Confidence            3567887786544   2344555554 689998 56666555444433333467999999998643 22222110 0111


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         +..|.||.|--+
T Consensus        82 ---~~~d~vi~~Ag~   93 (247)
T 2hq1_A           82 ---GRIDILVNNAGI   93 (247)
T ss_dssp             ---SCCCEEEECC--
T ss_pred             ---CCCCEEEECCCC
Confidence               356888887643

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=80.99  E-value=3.8  Score=33.53  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+.+||=.|++.|   .++..|++.+ .+|++++. ++.-.+.+.+.....+.++.++.+|+.+.+ +...+... ...|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~   83 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSA-IKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH-HHHc
Confidence            3567887776544   2344555554 68999998 665554444333333457889999998643 12222110 0111


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.||.|--
T Consensus        84 ---g~id~li~~Ag   94 (261)
T 1gee_A           84 ---GKLDVMINNAG   94 (261)
T ss_dssp             ---SCCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               24688887753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=80.75  E-value=2.9  Score=36.30  Aligned_cols=46  Identities=15%  Similarity=0.112  Sum_probs=38.0

Q ss_pred             cCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         47 AGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        47 ~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+++++++||-+|+  |.|.++..+++....+|++++.+++-++.+++
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            36778999999998  78888888887644699999999888777764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.56  E-value=4.5  Score=32.93  Aligned_cols=79  Identities=13%  Similarity=0.124  Sum_probs=50.8

Q ss_pred             CCCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         50 ITGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        50 ~~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .++++||=.|++.|   .++..|++.+ .+|+.++.+..-++.+.+..   ..++.++.+|+.+.+ +..++..     +
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNAL---KDNYTIEVCNLANKEECSNLISK-----T   82 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHT-----C
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh---ccCccEEEcCCCCHHHHHHHHHh-----c
Confidence            35788998887655   2445566664 69999999887666554432   357899999987643 1222211     1


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         +..|.+|.|--.
T Consensus        83 ---~~id~li~~Ag~   94 (249)
T 3f9i_A           83 ---SNLDILVCNAGI   94 (249)
T ss_dssp             ---SCCSEEEECCC-
T ss_pred             ---CCCCEEEECCCC
Confidence               357888888653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=80.48  E-value=4.9  Score=33.30  Aligned_cols=83  Identities=10%  Similarity=0.031  Sum_probs=50.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEE-eCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLI-EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~av-Eid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .+++||=.|++.|   .++..|++.+ .+|+.+ ..+..-.+.+.+.....+.++.++.+|+.+.+ +..++... ...|
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQI-DETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHc
Confidence            4567887786544   2345555554 688876 77776666555544444578999999998753 22222211 1112


Q ss_pred             cCCCCceEEEecC
Q psy17126        126 SEGLPGIRIIGNL  138 (240)
Q Consensus       126 ~~~~~~~~VvsNl  138 (240)
                         ++.|.+|.|-
T Consensus        81 ---g~id~lv~nA   90 (258)
T 3oid_A           81 ---GRLDVFVNNA   90 (258)
T ss_dssp             ---SCCCEEEECC
T ss_pred             ---CCCCEEEECC
Confidence               3568888876

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=80.46  E-value=3.7  Score=34.12  Aligned_cols=84  Identities=10%  Similarity=0.085  Sum_probs=50.6

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .+.+||=.|++.|   .++..|++++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.+ +...+... ...| 
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~-  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQ-EKDF-  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHH-HHHh-
Confidence            4578888887544   3455666665 69999998876655544433333467899999998643 22222211 0111 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.||.|--
T Consensus       110 --g~id~li~~Ag  120 (279)
T 3ctm_A          110 --GTIDVFVANAG  120 (279)
T ss_dssp             --SCCSEEEECGG
T ss_pred             --CCCCEEEECCc
Confidence              34688887743

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=80.38  E-value=3  Score=36.28  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=37.1

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~   92 (240)
                      ..+++ ++++||-+|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            44567 899999999975 7788888876445 89999999887777764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=80.37  E-value=4.2  Score=34.02  Aligned_cols=84  Identities=11%  Similarity=0.035  Sum_probs=50.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcch-------HHHHHHHHhcCCCCeEEEEccccccc-ccccchh
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRF-------TPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSE  119 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m-------~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~  119 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.+..-       ++.+.+.....+.++.++.+|+.+.+ ...++..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4678898898766   3456666665 699999988642       33333222233467899999998753 1222221


Q ss_pred             hhcccccCCCCceEEEecCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlP  139 (240)
                      . ...|   ++.|.+|.|--
T Consensus        84 ~-~~~~---g~iD~lvnnAG   99 (274)
T 3e03_A           84 T-VDTF---GGIDILVNNAS   99 (274)
T ss_dssp             H-HHHH---SCCCEEEECCC
T ss_pred             H-HHHc---CCCCEEEECCC
Confidence            1 1112   35788888764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=80.28  E-value=5.1  Score=33.60  Aligned_cols=59  Identities=10%  Similarity=0.070  Sum_probs=39.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHh-cCCCCeEEEEccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDP-RFTPCLDMLAQ-ASPCPVHFHLGDVMS  110 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~-~~~~~v~vi~~D~~~  110 (240)
                      .+.++|=.|++.|   .++..|++.+ .+|+.++.++ .-.+.+.+.+. ..+.++.++.+|+.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~   85 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN   85 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCC
Confidence            4678888887655   3445566665 6999999987 55544433332 334679999999987

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=80.08  E-value=5.5  Score=34.29  Aligned_cols=50  Identities=10%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             HHHHcCCCCCCEEEEECCchhH-HHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGS-ITRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~-lt~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      .++...++++++||=+|+|++. ++..+++. ++.+|++++.+++-.+.+++
T Consensus       155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred             eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence            4456678899999999999754 44555553 45799999999887666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	8e-31
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	4e-16
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	1e-15
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	2e-10
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	4e-10

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 8e-31
 Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 29/238 (12%)

Query: 10  PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAG------TITGNEVCEVGPGPG 63
           P+P I+DI KL            +L+ P + +KI                +V ++ PG G
Sbjct: 1   PIPGIKDISKLKF-----FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVG 55

Query: 64  SITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF-TMQNMFSEDR 121
             +    N+  P +  L+EK       L+   + SP  +     D   + T  N+  E+R
Sbjct: 56  IQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSNLIDEER 113

Query: 122 RR-----DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---- 172
                             + N+    S  LI++W+  I       +  +  ++  +    
Sbjct: 114 IFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTT 173

Query: 173 -ERACVKPILRPYQ-LSV--QEFGQI-CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAV 225
             +   +P +      SV  + F     +A  D  E      +   E  P       +
Sbjct: 174 ARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEI 231

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score = 73.0 bits (178), Expect = 4e-16
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           QNFL +  + D IV       G  + E+GPG  ++T  +   R  +L +IE D      L
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARL 59

Query: 91  DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
                  P    +            M           G P +R+ GNLP+N+STPL+   
Sbjct: 60  QTHPFLGPKLTIYQ--------QDAMTFNFGELAEKMGQP-LRVFGNLPYNISTPLMFHL 110

Query: 151 IQ 152
             
Sbjct: 111 FS 112

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-15
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           Q+ L  P + + I+  A     + V EVGPG G++T  +L  +  ++V  E DPR    L
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAEL 59

Query: 91  DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
               Q +P              + ++   D              + NLP+ +S+P + K 
Sbjct: 60  HKRVQGTPVASKLQ------VLVGDVLKTDLPFFD-------TCVANLPYQISSPFVFKL 106

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 31  QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
           QNF+      DKI+ N      + + E+G G G  T  ++  R   +  IE D +     
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-RCNFVTAIEIDHKLCKTT 59

Query: 91  DMLAQASPCPVHFH 104
           +            +
Sbjct: 60  ENKLVDHDNFQVLN 73

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score = 56.1 bits (134), Expect = 4e-10
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 23  LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
           +    + SQNFL   ++ ++I++       + V E+G G G +T  +         +   
Sbjct: 1   MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELD 60

Query: 83  DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
              F    + L   +   +         F  +  +               +I+GN+P+++
Sbjct: 61  SHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY---------------KIVGNIPYHL 105

Query: 143 STPLIIKWI 151
           ST +I K +
Sbjct: 106 STQIIKKVV 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.97
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.97
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.97
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.97
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	99.94
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.71
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.6
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.59
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.57
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.55
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.48
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.48
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.47
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.45
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.44
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.43
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.43
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.42
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.41
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.39
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.37
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.37
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.34
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.33
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.33
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.32
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.32
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.32
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.31
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.29
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.29
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.29
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.29
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.29
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.27
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.27
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.25
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.21
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.21
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.2
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.2
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.19
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.19
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.18
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.16
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.15
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.15
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.14
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.13
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.13
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.11
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.1
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.09
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.08
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.07
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.07
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.03
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.99
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.97
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.96
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.93
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.93
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.92
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.92
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.91
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.89
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.8
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.75
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.66
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.55
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.52
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.48
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.28
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.12
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.0
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.79
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.71
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.71
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.71
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.68
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.63
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.62
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.57
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.53
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.44
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.37
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.36
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.29
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.24
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.2
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.99
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.81
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.78
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.71
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.7
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.62
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.56
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.38
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.3
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.81
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.38
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.01
d2hkja1	78	Topoisomerase VI-B subunit middle domain {Archaeon	94.88
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.79
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.05
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.81
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.71
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.43
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.29
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.15
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.02
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.91
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.13
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.05
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.04
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.81
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.84
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	87.66
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.64
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.42
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.35
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.78
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.59
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.47
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.44
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.41
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.35
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.23
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.16
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	86.08
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.07
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.8
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.73
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.54
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.35
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.16
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.98
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.87
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.16
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.94
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.65
d1tdza1	88	DNA repair protein MutM (Fpg) {Lactococcus lactis	83.18
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	83.05
d1k3xa1	89	Endonuclease VIII {Escherichia coli [TaxId: 562]}	82.04
d1ee8a1	89	DNA repair protein MutM (Fpg) {Thermus thermophilu	81.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	81.14
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.04
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.5

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.4e-32  Score=235.00  Aligned_cols=160  Identities=25%  Similarity=0.380  Sum_probs=133.8

Q ss_pred             ccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      ||||+|+.++++|++.+.+.+++.|||||||+|+||..|+++ +.+|+|||+|+++++.+++.... .++++++++|+++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~   78 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGG
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhh
Confidence            899999999999999999999999999999999999999998 47999999999999999874322 3789999999999


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc---------------------------------c
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---------------------------------N  157 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---------------------------------~  157 (240)
                      +++.++....        +.+..|||||||||||+++++++.....                                 +
T Consensus        79 ~~~~~~~~~~--------~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~A~~gsk~yg~Lsv~~q~  150 (252)
T d1qyra_          79 FNFGELAEKM--------GQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQY  150 (252)
T ss_dssp             CCHHHHHHHH--------TSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHH
T ss_pred             hccccccccc--------CCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhccCCCChhhhHHHhhhhh
Confidence            9987754321        3468999999999999999999876543                                 2


Q ss_pred             ccccchh------------------------------------------------h---------hhHHHHHHHcCCCCC
Q psy17126        158 LLFPKHK------------------------------------------------R---------QLVVSLLERACVKPI  180 (240)
Q Consensus       158 ~~~~~~~------------------------------------------------~---------~~~~~~l~~~gi~~~  180 (240)
                      +|+++.+                                                |         ....+.++.+|++++
T Consensus       151 ~~~~~~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~~~~F~~rRK~l~~~L~~~~~~~~l~~~~i~~~  230 (252)
T d1qyra_         151 YCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPA  230 (252)
T ss_dssp             HEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCHHHHHHTTCCTT
T ss_pred             ccccccccccChhhhccccccceeEEEEecccccchhhhHHHHHHHHHHHHHccchHHHHHHHhhhccHHHHHHCCCCcc
Confidence            2222222                                                0         123567899999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy17126        181 LRPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       181 ~R~e~ls~~~f~~L~~~l~~  200 (240)
                      .|||+||++||+.|++.+.+
T Consensus       231 ~R~e~Ls~~~~~~L~~~l~~  250 (252)
T d1qyra_         231 MRAENISVAQYCQMANYLAE  250 (252)
T ss_dssp             SBGGGSCHHHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHh
Confidence            99999999999999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.97  E-value=4.6e-31  Score=225.69  Aligned_cols=109  Identities=25%  Similarity=0.366  Sum_probs=98.2

Q ss_pred             ccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      ||||+|+.++++|++.+++.++++|||||||+|+||..|++. +.+|+|||+|+++++.++++... .+|++++++|+++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~-~~n~~i~~~D~l~   78 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQ   78 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc-ccchhhhhhhhhh
Confidence            899999999999999999999999999999999999999998 47999999999999999986643 3789999999999


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      ++++.             .....||||||||||||++++++...
T Consensus        79 ~~~~~-------------~~~~~vv~NLPYnIss~il~~ll~~~  109 (235)
T d1qama_          79 FKFPK-------------NQSYKIFGNIPYNISTDIIRKIVFDS  109 (235)
T ss_dssp             CCCCS-------------SCCCEEEEECCGGGHHHHHHHHHHSC
T ss_pred             ccccc-------------cccceeeeeehhhhhHHHHHHHHhhh
Confidence            88654             23468999999999999999998653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.97  E-value=8.6e-32  Score=231.58  Aligned_cols=116  Identities=23%  Similarity=0.369  Sum_probs=103.4

Q ss_pred             hhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEE
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHF  103 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~v  103 (240)
                      ..+++||||||+|+.++++|++.+.+.++++|||||||+|+||..|++.+ .+|+|||+|++|++.++++... .+++++
T Consensus         2 ~~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~-~~n~~i   79 (245)
T d1yuba_           2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-NTRVTL   79 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-CSEEEE
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh-ccchhh
Confidence            35789999999999999999999999999999999999999999999984 7999999999999988765532 378999


Q ss_pred             EEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126        104 HLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI  154 (240)
Q Consensus       104 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~  154 (240)
                      +++|+++++++.             ..++.||||||||||||++++++...
T Consensus        80 i~~D~l~~~~~~-------------~~~~~vv~NLPY~Ist~il~~~l~~~  117 (245)
T d1yuba_          80 IHQDILQFQFPN-------------KQRYKIVGNIPYHLSTQIIKKVVFES  117 (245)
T ss_dssp             CCSCCTTTTCCC-------------SSEEEEEEECCSSSCHHHHHHHHHHC
T ss_pred             hhhhhhcccccc-------------ceeeeEeeeeehhhhHHHHHHHhhhc
Confidence            999999988754             24688999999999999999998653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=225.56  Aligned_cols=109  Identities=28%  Similarity=0.497  Sum_probs=98.2

Q ss_pred             ccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        31 Q~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ||||+|+.++++|++.+++.++++|||||||+|+||..|++++ .+|+|||+|+++++.+++......  ++++++++|+
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~   79 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV   79 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH
Confidence            8999999999999999999999999999999999999999995 799999999999999998765432  6899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                      ++++++.               ++.||||||||||||++++++....
T Consensus        80 l~~~~~~---------------~~~vV~NLPY~Iss~il~~~~~~~~  111 (278)
T d1zq9a1          80 LKTDLPF---------------FDTCVANLPYQISSPFVFKLLLHRP  111 (278)
T ss_dssp             TTSCCCC---------------CSEEEEECCGGGHHHHHHHHHHCSS
T ss_pred             hhhhhhh---------------hhhhhcchHHHHHHHHHHHHHhhCC
Confidence            9987542               4689999999999999999987644

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5e-28  Score=215.43  Aligned_cols=137  Identities=20%  Similarity=0.338  Sum_probs=105.5

Q ss_pred             CCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCC------CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeC
Q psy17126         10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTI------TGNEVCEVGPGPGSITRSILNRR-PARLVLIEK   82 (240)
Q Consensus        10 ~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~------~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEi   82 (240)
                      |+|+++++.     +.+|+||||||+|+.++++|++.+++.      ++++|||||||+|.||..|++++ +.+|++||+
T Consensus         1 p~p~~~~l~-----k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~   75 (322)
T d1i4wa_           1 PIPGIKDIS-----KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK   75 (322)
T ss_dssp             CCCCCCTTC-----SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred             CCCchhhhh-----hhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEEC
Confidence            566665443     457999999999999999999998764      46789999999999999999874 469999999


Q ss_pred             CcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhh---hcc-cc-cCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126         83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSED---RRR-DW-SEGLPGIRIIGNLPFNVSTPLIIKWIQA  153 (240)
Q Consensus        83 d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~---~~~-~~-~~~~~~~~VvsNlPY~Iss~il~~ll~~  153 (240)
                      |+.+++.+++...  +++++++++|+++++. .++....   .+. .| ........|||||||+|+++++.+|+..
T Consensus        76 D~~~~~~L~~~~~--~~~~~ii~~D~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~  150 (322)
T d1i4wa_          76 RSSLYKFLNAKFE--GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSC  150 (322)
T ss_dssp             CHHHHHHHHHHTT--TSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcc--CCCcEEEeCchhhcchhhhhhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHh
Confidence            9999999998653  4789999999998752 2221110   000 11 1112345799999999999999999974

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=3.1e-17  Score=135.85  Aligned_cols=103  Identities=21%  Similarity=0.246  Sum_probs=87.2

Q ss_pred             hhhhccCccccCCHHHHHHHHHHc---CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNA---GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~---~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      ++++.++| |.+++.++..++..+   +...|.+|||+|||||.++..++.+++.+|+|||+|+.+++.+++++...+.+
T Consensus        17 ~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~   95 (201)
T d1wy7a1          17 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   95 (201)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence            47888999 999999988876433   33478999999999999999998887679999999999999999998776778


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .+++.+|+.+++                .++|.||+||||...
T Consensus        96 ~~~~~~d~~~~~----------------~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          96 FKVFIGDVSEFN----------------SRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             EEEEESCGGGCC----------------CCCSEEEECCCCSSS
T ss_pred             ceEEECchhhhC----------------CcCcEEEEcCccccc
Confidence            899999987642                368999999999654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=1.3e-16  Score=131.86  Aligned_cols=98  Identities=19%  Similarity=0.209  Sum_probs=75.6

Q ss_pred             hhhhccCccccCCHHHHHHHHHHc---CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126         24 RALKQLSQNFLFEPRLTDKIVRNA---GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP  100 (240)
Q Consensus        24 ~~~k~~gQ~fl~d~~i~~~iv~~~---~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~  100 (240)
                      +++.++.| |.+++.++..++..+   +--.|++|||+|||||.++..++..++.+|+|||+|+.+++.+++|.    .+
T Consensus        19 ~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~   93 (197)
T d1ne2a_          19 NFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----GG   93 (197)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TT
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----cc
Confidence            46777888 999999998886554   33468999999999999999998887678999999999999999875    46


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +.++++|+.+++                +++|.||+||||..
T Consensus        94 ~~~~~~D~~~l~----------------~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          94 VNFMVADVSEIS----------------GKYDTWIMNPPFGS  119 (197)
T ss_dssp             SEEEECCGGGCC----------------CCEEEEEECCCC--
T ss_pred             ccEEEEehhhcC----------------CcceEEEeCcccch
Confidence            899999997643                36899999999953

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=3.2e-15  Score=121.46  Aligned_cols=105  Identities=15%  Similarity=0.043  Sum_probs=87.2

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      .+..++...++..+.+.++++|||||||+|.+|..++..+ .+|+|+|+|+.|++.++++++..+  ++++++++|+.+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~   94 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence            5778899999999999999999999999999999999874 799999999999999999987765  6999999999775


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ  152 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~  152 (240)
                      ....             ..+|.|+.+.+..-...++.++..
T Consensus        95 ~~~~-------------~~~D~v~~~~~~~~~~~~~~~~~~  122 (186)
T d1l3ia_          95 LCKI-------------PDIDIAVVGGSGGELQEILRIIKD  122 (186)
T ss_dssp             HTTS-------------CCEEEEEESCCTTCHHHHHHHHHH
T ss_pred             cccc-------------CCcCEEEEeCccccchHHHHHHHH
Confidence            3221             468999999887655544444433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=7.9e-15  Score=119.72  Aligned_cols=101  Identities=14%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~~~~  116 (240)
                      .+.+++.+.+.++++|||||||+|.++..+++.+ .+|+++|+|+.+++.++++++..+   .+++++++|+.+ ++++ 
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~-  117 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD-  117 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT-
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc-
Confidence            4567888888899999999999999999999874 799999999999999999876442   469999999976 3322 


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                                  +.+|.|++|+||+.....+.+++....
T Consensus       118 ------------~~fD~Ii~~~p~~~~~~~~~~~l~~~~  144 (194)
T d1dusa_         118 ------------RKYNKIITNPPIRAGKEVLHRIIEEGK  144 (194)
T ss_dssp             ------------SCEEEEEECCCSTTCHHHHHHHHHHHH
T ss_pred             ------------CCceEEEEcccEEecchhhhhHHHHHH
Confidence                        468999999999998887777777544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=4.6e-15  Score=123.84  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~  115 (240)
                      ++..+.+++.++++++++|||||||+|.+|..+++++ .+|+|||+|+.|++.+++++...+ +++.++++|+.++++++
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~   80 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   80 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence            3456778999999999999999999999999999985 799999999999999998765433 68999999999987654


Q ss_pred             cchhhhcccccCCCCceEEEecCCC
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                                   +++|.|+++.-.
T Consensus        81 -------------~~fD~v~~~~~l   92 (234)
T d1xxla_          81 -------------DSFDIITCRYAA   92 (234)
T ss_dssp             -------------TCEEEEEEESCG
T ss_pred             -------------cccceeeeecee
Confidence                         468999987653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.55  E-value=8.6e-15  Score=121.05  Aligned_cols=91  Identities=12%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccch
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~  118 (240)
                      +.++++.++++++++|||||||+|.+|..+++++ .+|+|+|+|+.|++.++++....+ ++++++++|+.++++++   
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~---   79 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD---   79 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhcccccccccccccccccccccccc---
Confidence            4678889999999999999999999999999986 699999999999999998776544 78999999999987653   


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCH
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVST  144 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss  144 (240)
                                +.+|+|+++-- +++..
T Consensus        80 ----------~~fD~v~~~~~l~~~~d   96 (231)
T d1vl5a_          80 ----------ERFHIVTCRIAAHHFPN   96 (231)
T ss_dssp             ----------TCEEEEEEESCGGGCSC
T ss_pred             ----------cccccccccccccccCC
Confidence                      46888887754 34543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.5e-13  Score=115.37  Aligned_cols=93  Identities=16%  Similarity=0.085  Sum_probs=77.7

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      --..+..++.+++.+++.++++|||||||+|.++..++++.+.+|+|||+|+.|++.++++....+  ++++++++|+.+
T Consensus        15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            345677888899999999999999999999999999998755799999999999999998766554  679999999988


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +.. +             +++|.|++.--
T Consensus        95 ~~~-~-------------~~fD~v~~~~~  109 (245)
T d1nkva_          95 YVA-N-------------EKCDVAACVGA  109 (245)
T ss_dssp             CCC-S-------------SCEEEEEEESC
T ss_pred             ccc-c-------------CceeEEEEEeh
Confidence            632 1             36788887644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.8e-13  Score=114.36  Aligned_cols=103  Identities=14%  Similarity=0.146  Sum_probs=80.5

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..+..+++.....++.+|||||||||.++..|++.+ .+|+|||+|+.|++.++++....+.+++++++|+.++++++  
T Consensus        28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~-~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~--  104 (251)
T d1wzna1          28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN--  104 (251)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS--
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-eEEEEEeeccccccccccccccccccchheehhhhhccccc--
Confidence            345667777777778899999999999999999986 69999999999999999987665668999999999987643  


Q ss_pred             hhhhcccccCCCCceEEEec--CCCCCCHHHHHHHHHhcc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGN--LPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsN--lPY~Iss~il~~ll~~~~  155 (240)
                                  ++|.|++.  .=...+.+-..+.|....
T Consensus       105 ------------~fD~I~~~~~~~~~~~~~~~~~~L~~~~  132 (251)
T d1wzna1         105 ------------EFDAVTMFFSTIMYFDEEDLRKLFSKVA  132 (251)
T ss_dssp             ------------CEEEEEECSSGGGGSCHHHHHHHHHHHH
T ss_pred             ------------ccchHhhhhhhhhcCChHHHHHHHHHHH
Confidence                        57877763  223355555556666544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.7e-14  Score=121.24  Aligned_cols=104  Identities=16%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             hhccCccccCCHH----------HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHH
Q psy17126         26 LKQLSQNFLFEPR----------LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLA   94 (240)
Q Consensus        26 ~k~~gQ~fl~d~~----------i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~   94 (240)
                      ...||..|.+++.          +++..+.... ..+.+|||+|||+|.++..++... ..+|+|+|+|+..++.+++|+
T Consensus        74 ~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na  152 (274)
T d2b3ta1          74 REFWSLPLFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA  152 (274)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH
T ss_pred             EEEeeeEEEEeccccccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHH
Confidence            3457777877776          4555555544 456789999999999999999875 379999999999999999998


Q ss_pred             hcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126         95 QASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus        95 ~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      ...+ .+++++++|+.+. +.+             .++|+|||||||-.+.
T Consensus       153 ~~~~~~~v~~~~~d~~~~-~~~-------------~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         153 QHLAIKNIHILQSDWFSA-LAG-------------QQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             HHHTCCSEEEECCSTTGG-GTT-------------CCEEEEEECCCCBCTT
T ss_pred             HHhCcccceeeecccccc-cCC-------------CceeEEEecchhhhhh
Confidence            7665 5799999998652 211             3689999999996544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.45  E-value=1.2e-13  Score=118.39  Aligned_cols=94  Identities=9%  Similarity=0.089  Sum_probs=75.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~  116 (240)
                      ++..+....++.++.+|||||||+|.++..|+++...+|+|||+++.|++.++++....  .++++++++|+.++++++ 
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~-  133 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED-  133 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT-
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc-
Confidence            44555566678899999999999999999999874469999999999999999876543  378999999999987653 


Q ss_pred             chhhhcccccCCCCceEEEecCC-CCCCHH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLP-FNVSTP  145 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~  145 (240)
                                  +++|+|+++-- +++..+
T Consensus       134 ------------~sfD~V~~~~~l~h~~d~  151 (282)
T d2o57a1         134 ------------NSYDFIWSQDAFLHSPDK  151 (282)
T ss_dssp             ------------TCEEEEEEESCGGGCSCH
T ss_pred             ------------cccchhhccchhhhccCH
Confidence                        46899988765 345443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.44  E-value=9.7e-14  Score=109.38  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             HHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccch
Q psy17126         42 KIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        42 ~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .+...++. -.|.+|||+|||||.++..++.+++.+|++||.|+.+++.++++++..+  ++++++++|+.++- ...  
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l-~~~--   80 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-DCL--   80 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH-HHB--
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccc-ccc--
Confidence            34444443 3688999999999999999999987899999999999999999887654  67999999997741 111  


Q ss_pred             hhhcccccCCCCceEEEecCCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                               ..++|+|+.+|||.-
T Consensus        81 ---------~~~fDiIf~DPPy~~   95 (152)
T d2esra1          81 ---------TGRFDLVFLDPPYAK   95 (152)
T ss_dssp             ---------CSCEEEEEECCSSHH
T ss_pred             ---------ccccceeEechhhcc
Confidence                     147899999999963

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=3.7e-13  Score=111.70  Aligned_cols=94  Identities=18%  Similarity=0.078  Sum_probs=79.3

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM  109 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~  109 (240)
                      ++..|.++.++++.++++++++|||||||||.+|..+++..  .++|+++|+++.+++.++++.+... .|+.++++|+.
T Consensus        57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            56779999999999999999999999999999999999863  3689999999999999999877654 78999999987


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      +.....             ++||+|+.+-.
T Consensus       137 ~~~~~~-------------~~fD~I~~~~~  153 (213)
T d1dl5a1         137 YGVPEF-------------SPYDVIFVTVG  153 (213)
T ss_dssp             GCCGGG-------------CCEEEEEECSB
T ss_pred             Hccccc-------------cchhhhhhhcc
Confidence            653321             46888887654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=4.7e-13  Score=109.36  Aligned_cols=93  Identities=11%  Similarity=0.083  Sum_probs=74.5

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      +.++.+|||||||+|.+|..+++.+ .+|+|+|+|+.|++.++++....+.++.++++|+.++++++             
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~-------------  100 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED-------------  100 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT-------------
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccccccccccccccccccccC-------------
Confidence            3577899999999999999999985 79999999999999999887665677899999999987653             


Q ss_pred             CCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        129 LPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       129 ~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                      +.+|+|+++-= .+++++-+.+++....
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~  128 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVR  128 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHH
Confidence            46888887644 3456656666666554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=4.1e-13  Score=111.96  Aligned_cols=103  Identities=21%  Similarity=0.168  Sum_probs=84.4

Q ss_pred             cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126         29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD  107 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D  107 (240)
                      .|| ++..|.+..+|++.+.++++++|||||||||.+|..|++....+|+++|.++.+++.+++++...+ .|++++++|
T Consensus        57 ~g~-~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd  135 (215)
T d1jg1a_          57 AGQ-TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD  135 (215)
T ss_dssp             TTC-EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             hhh-hhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence            455 788999999999999999999999999999999999998633579999999999999999887766 899999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCC-CCCCHH
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTP  145 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~  145 (240)
                      ..+-..             ...+||+|+.+-. ..+...
T Consensus       136 ~~~g~~-------------~~~pfD~Iiv~~a~~~ip~~  161 (215)
T d1jg1a_         136 GSKGFP-------------PKAPYDVIIVTAGAPKIPEP  161 (215)
T ss_dssp             GGGCCG-------------GGCCEEEEEECSBBSSCCHH
T ss_pred             cccCCc-------------ccCcceeEEeecccccCCHH
Confidence            976321             1257888776543 334443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.41  E-value=7.1e-13  Score=111.14  Aligned_cols=92  Identities=20%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             CccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccc
Q psy17126         30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM  109 (240)
Q Consensus        30 gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~  109 (240)
                      |+ .+..|.+..+|++.+.++++++|||||||+|.+|..|++. +++|+++|+++.+++.++++.... .|++++++|..
T Consensus        50 g~-~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~  126 (224)
T d1vbfa_          50 GI-NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGT  126 (224)
T ss_dssp             TE-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGG
T ss_pred             CC-ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc-cccccccCchh
Confidence            44 5678999999999999999999999999999999999998 479999999999999999876543 78999999986


Q ss_pred             cccccccchhhhcccccCCCCceEEEec
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                      ....             +.++||+|+.+
T Consensus       127 ~g~~-------------~~~pfD~Iiv~  141 (224)
T d1vbfa_         127 LGYE-------------EEKPYDRVVVW  141 (224)
T ss_dssp             GCCG-------------GGCCEEEEEES
T ss_pred             hcch-------------hhhhHHHHHhh
Confidence            5321             12578887765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.39  E-value=8e-13  Score=110.62  Aligned_cols=91  Identities=9%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      ++.+|||||||+|.++..+++++ .+|+|||+|+.|++.|+++....+.+++++++|+.++++.              ++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~--------------~~  101 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN--------------RK  101 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS--------------CC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchhhhhhccccccccCccceeeccchhhhccc--------------cc
Confidence            45799999999999999999986 6999999999999999987766567899999999987643              35


Q ss_pred             ceEEEec---CCCCCCHHHHHHHHHhccc
Q psy17126        131 GIRIIGN---LPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       131 ~~~VvsN---lPY~Iss~il~~ll~~~~~  156 (240)
                      +|.|++.   +-|-.+...+.+++..+..
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~  130 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSN  130 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHT
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHH
Confidence            7888763   2344455566677766543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.37  E-value=3.7e-12  Score=103.46  Aligned_cols=97  Identities=14%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             HHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhc
Q psy17126         44 VRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      +..+....+.+|||||||+|..+..+++++ .+|+|||+|+.|++.++++....+ +++++..+|+.+..++        
T Consensus        23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------   93 (198)
T d2i6ga1          23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD--------   93 (198)
T ss_dssp             HHHHTTSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC--------
T ss_pred             HHHcccCCCCcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc--------
Confidence            334444444599999999999999999986 699999999999999988766544 6799999999887643        


Q ss_pred             ccccCCCCceEEEecCCCC-CCHHHHHHHHHhcc
Q psy17126        123 RDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQAIS  155 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~~~~  155 (240)
                            +.||.|+++-.+. +..+.+.+++....
T Consensus        94 ------~~fD~I~~~~~~~~~~~~~~~~~l~~~~  121 (198)
T d2i6ga1          94 ------GEYDFILSTVVMMFLEAQTIPGLIANMQ  121 (198)
T ss_dssp             ------CCEEEEEEESCGGGSCTTHHHHHHHHHH
T ss_pred             ------ccccEEEEeeeeecCCHHHHHHHHHHHH
Confidence                  3579999887754 44455556666544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-12  Score=108.74  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=78.9

Q ss_pred             cCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC------C
Q psy17126         29 LSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS------P   98 (240)
Q Consensus        29 ~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~------~   98 (240)
                      .|| ++..|.+..+|++.+  .+++|++|||||||+|.+|..|++..  .++|++||++++|++.++++++..      .
T Consensus        53 ~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~  131 (224)
T d1i1na_          53 FQA-TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS  131 (224)
T ss_dssp             TTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred             chh-hhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccc
Confidence            466 788899999999998  67899999999999999999998862  369999999999999998876532      2


Q ss_pred             CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCC
Q psy17126         99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus        99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .+++++.+|......+.             .+||+|+.+--
T Consensus       132 ~~~~~~~gD~~~~~~~~-------------~~fD~I~~~~~  159 (224)
T d1i1na_         132 GRVQLVVGDGRMGYAEE-------------APYDAIHVGAA  159 (224)
T ss_dssp             SSEEEEESCGGGCCGGG-------------CCEEEEEECSB
T ss_pred             cceEEEEeecccccchh-------------hhhhhhhhhcc
Confidence            67899999987654322             46888877643

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.1e-12  Score=112.59  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEcc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGD  107 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D  107 (240)
                      .+-+.-+..|+..+++.||++|||+|||+|++|..|++. + .++|+++|+++++++.++++++..    ..|++++++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            356778889999999999999999999999999999987 3 379999999999999999977542    3789999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.+.++++             +.+|.|+.++|-
T Consensus       159 ~~~~~~~~-------------~~fDaV~ldlp~  178 (264)
T d1i9ga_         159 LADSELPD-------------GSVDRAVLDMLA  178 (264)
T ss_dssp             GGGCCCCT-------------TCEEEEEEESSC
T ss_pred             cccccccC-------------CCcceEEEecCC
Confidence            98766543             468999999874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=7e-13  Score=114.12  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             hhccCccccCCHH----------HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         26 LKQLSQNFLFEPR----------LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        26 ~k~~gQ~fl~d~~----------i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      ...||..|.+++.          +++.+++.....+..+|+|+|||+|.++..+++....+|+|+|+|+..++.+++|++
T Consensus        75 ~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_          75 KEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH
Confidence            4457778888776          345555544334456899999999999999988755799999999999999999987


Q ss_pred             cCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         96 ASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        96 ~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ..+  .++.++.+|+.+.. ...           .+++|.|||||||--
T Consensus       155 ~~~~~~~~~i~~~~~~~~~-~~~-----------~~~fDlIVsNPPYI~  191 (271)
T d1nv8a_         155 RHGVSDRFFVRKGEFLEPF-KEK-----------FASIEMILSNPPYVK  191 (271)
T ss_dssp             HTTCTTSEEEEESSTTGGG-GGG-----------TTTCCEEEECCCCBC
T ss_pred             HcCCCceeEEeeccccccc-ccc-----------cCcccEEEEcccccC
Confidence            754  57888999987642 211           147899999999953

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=108.57  Aligned_cols=95  Identities=11%  Similarity=0.060  Sum_probs=73.5

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhccccc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ...++.+|||||||+|.++..++...+.+|+|||+|+.|++.++++....+ .+++++++|+.+++++.           
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~-----------  125 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP-----------  125 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS-----------
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccc-----------
Confidence            345678999999999999999887656799999999999999998765433 57899999999976542           


Q ss_pred             CCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        127 EGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       127 ~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                        +++|.|+++-- .+++.+.+.+++....
T Consensus       126 --~~fD~I~~~~~l~h~~~~~~~~~l~~i~  153 (222)
T d2ex4a1         126 --DSYDVIWIQWVIGHLTDQHLAEFLRRCK  153 (222)
T ss_dssp             --SCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             --ccccccccccccccchhhhhhhHHHHHH
Confidence              36788877654 4566676666666544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=109.20  Aligned_cols=88  Identities=13%  Similarity=-0.006  Sum_probs=65.9

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      +..++||||||+|.++..|+.+. ..+|+|+|+|+.+++.+++|++..+  +++.+++.+....-+..+...       .
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~-------~  133 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE-------S  133 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC-------C
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhc-------c
Confidence            34689999999999999999864 3699999999999999999987654  779999887755433322211       1


Q ss_pred             CCCceEEEecCCCCCCHH
Q psy17126        128 GLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Iss~  145 (240)
                      .+++|.|||||||.-+..
T Consensus       134 ~~~fD~ivsNPPY~~~~e  151 (250)
T d2h00a1         134 EIIYDFCMCNPPFFANQL  151 (250)
T ss_dssp             SCCBSEEEECCCCC----
T ss_pred             cCceeEEEecCcccccch
Confidence            247899999999976543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=2.1e-12  Score=109.88  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      |.-+..|+..+++++|++|||+|||+|++|..|++. + .++|+++|+++++++.++++++.+.  .|++++++|+.+.-
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            344566888999999999999999999999999986 2 3699999999999999999887643  78999999997642


Q ss_pred             ccccchhhhcccccCCCCceEEEecCC
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                       .+             ..+|.|+.++|
T Consensus       151 -~~-------------~~fD~V~ld~p  163 (250)
T d1yb2a1         151 -SD-------------QMYDAVIADIP  163 (250)
T ss_dssp             -CS-------------CCEEEEEECCS
T ss_pred             -cc-------------ceeeeeeecCC
Confidence             11             36899999987

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=2.9e-12  Score=109.17  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ..++++|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++|++..+-+.+++++|+.+. ++    .         
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~-~~----~---------  182 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LP----F---------  182 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GG----G---------
T ss_pred             cCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc-cc----c---------
Confidence            3689999999999999999998875 6999999999999999998876665678899987642 11    1         


Q ss_pred             CCceEEEecCCCC
Q psy17126        129 LPGIRIIGNLPFN  141 (240)
Q Consensus       129 ~~~~~VvsNlPY~  141 (240)
                      +++|.|++|+.++
T Consensus       183 ~~fD~V~ani~~~  195 (254)
T d2nxca1         183 GPFDLLVANLYAE  195 (254)
T ss_dssp             CCEEEEEEECCHH
T ss_pred             cccchhhhccccc
Confidence            4789999996543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.32  E-value=3.9e-12  Score=101.24  Aligned_cols=92  Identities=10%  Similarity=0.009  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-------------CCCe
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-------------PCPV  101 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-------------~~~v  101 (240)
                      +++.+.+ ....+.+.++.+|||||||+|..+..|++++ .+|+|||+|+.|++.+++++...             ..++
T Consensus         5 ~~~~~~~-~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T d1pjza_           5 VNKDLQQ-YWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   82 (201)
T ss_dssp             STHHHHH-HHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             HHHHHHH-HHHHcCCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence            3455444 5566788899999999999999999999996 79999999999999999876432             2346


Q ss_pred             EEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        102 HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       102 ~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +++++|+.+++....            ..+|.|++.--+
T Consensus        83 ~~~~~d~~~l~~~~~------------~~~D~i~~~~~l  109 (201)
T d1pjza_          83 EIWCGDFFALTARDI------------GHCAAFYDRAAM  109 (201)
T ss_dssp             EEEEECCSSSTHHHH------------HSEEEEEEESCG
T ss_pred             ceecccccccccccc------------cceeEEEEEeee
Confidence            788888887654321            246888775543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.32  E-value=3.5e-12  Score=108.22  Aligned_cols=103  Identities=14%  Similarity=0.091  Sum_probs=81.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ....+++.+...++.+|||+|||+|.+|..|+..+..+|++||+++.|++.++++... .++++++++|+.++++++   
T Consensus        81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~d~~~~~~~~---  156 (254)
T d1xtpa_          81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-MPVGKFILASMETATLPP---  156 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-SSEEEEEESCGGGCCCCS---
T ss_pred             HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-cccceeEEccccccccCC---
Confidence            3456677777778889999999999999998876557899999999999999986643 256899999999877543   


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                                +.+|.|+++-. .+++.+.+.+++....
T Consensus       157 ----------~~fD~I~~~~vl~hl~d~d~~~~l~~~~  184 (254)
T d1xtpa_         157 ----------NTYDLIVIQWTAIYLTDADFVKFFKHCQ  184 (254)
T ss_dssp             ----------SCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             ----------CccceEEeeccccccchhhhHHHHHHHH
Confidence                      46899888877 4577776667776654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=3e-12  Score=102.69  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=72.7

Q ss_pred             HHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         39 LTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        39 i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      +.+.+..++.  +..+.+|||+|||+|.++..++.++ ++|++||+|+.+++.++++++..+-+.+++..|+..+.....
T Consensus        27 v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g-a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc-chhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccc
Confidence            4444444432  3578899999999999999999986 699999999999999999887655334555555543211100


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCH-HHHHHHHH
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVST-PLIIKWIQ  152 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss-~il~~ll~  152 (240)
                               ....++|+|+.||||.... .++..+++
T Consensus       106 ---------~~~~~fD~If~DPPY~~~~~~~l~~l~~  133 (171)
T d1ws6a1         106 ---------AQGERFTVAFMAPPYAMDLAALFGELLA  133 (171)
T ss_dssp             ---------HTTCCEEEEEECCCTTSCTTHHHHHHHH
T ss_pred             ---------ccCCccceeEEccccccCHHHHHHHHHH
Confidence                     1124789999999998653 44555554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=2.8e-12  Score=109.58  Aligned_cols=86  Identities=17%  Similarity=0.092  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~  117 (240)
                      ..++++.  +.+|.+|||+|||+|.++..+++++.++|+|+|+++.+++.+++|++..+  ++++++++|+.++...   
T Consensus        98 r~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---  172 (260)
T d2frna1          98 RVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---  172 (260)
T ss_dssp             HHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---
T ss_pred             HHHHHhh--cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---
Confidence            3445554  35799999999999999999999876799999999999999999886543  6799999999876422   


Q ss_pred             hhhhcccccCCCCceEEEecCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                                 +.+|.|+.|+|++
T Consensus       173 -----------~~~D~Ii~~~p~~  185 (260)
T d2frna1         173 -----------NIADRILMGYVVR  185 (260)
T ss_dssp             -----------SCEEEEEECCCSS
T ss_pred             -----------CCCCEEEECCCCc
Confidence                       3579999999974

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.29  E-value=5e-12  Score=102.47  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             cCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      .+...+.+.+...+.. ..+.+|||++||||+++..++.+++.+|++||.|+.++..++++++..+  .+++++++|+.+
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~  102 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  102 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence            3445666777777653 4789999999999999999999988899999999999999999876543  589999999987


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCC--HHHHHHHHH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS--TPLIIKWIQ  152 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is--s~il~~ll~  152 (240)
                      + +..+..        ...++|.|+.+|||.-.  ..++..+++
T Consensus       103 ~-l~~~~~--------~~~~fDlIflDPPY~~~~~~~~l~~i~~  137 (182)
T d2fhpa1         103 A-LEQFYE--------EKLQFDLVLLDPPYAKQEIVSQLEKMLE  137 (182)
T ss_dssp             H-HHHHHH--------TTCCEEEEEECCCGGGCCHHHHHHHHHH
T ss_pred             h-hhhhcc--------cCCCcceEEechhhhhhHHHHHHHHHHH
Confidence            4 222111        12478999999999643  344444443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=5.4e-12  Score=109.21  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      .++.+++.+++++|++|||||||+|.++..+++..+++|+||.+|+..++.++++....+  +++++..+|+.+++
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~  125 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD  125 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc
Confidence            567888999999999999999999999999888655799999999999999998765543  78999999987764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=4.4e-12  Score=109.38  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~  112 (240)
                      +.++.+++.+++++|++|||||||+|.++..++++.+.+|+||++|+.+++.+++++.+.+  .++.+...|..+++
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA  115 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc
Confidence            3567889999999999999999999999999998745799999999999999998876554  56888888876643

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.4e-12  Score=104.28  Aligned_cols=103  Identities=19%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126         38 RLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        38 ~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~  115 (240)
                      .+.+.+...+.. -.+.+|||++||||+++..++++++.+|++||.|+..++.++++++... .+++++++|+.++- ..
T Consensus        29 ~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l-~~  107 (183)
T d2fpoa1          29 RVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL-AQ  107 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH-SS
T ss_pred             HHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc-cc
Confidence            344444444431 2578999999999999999999988899999999999999999887654 68999999988642 11


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCCCH-HHHHHHHH
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNVST-PLIIKWIQ  152 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss-~il~~ll~  152 (240)
                      .           ..++|+|+.+|||.-.. +.++.++.
T Consensus       108 ~-----------~~~fDlIf~DPPY~~~~~~~~l~~l~  134 (183)
T d2fpoa1         108 K-----------GTPHNIVFVDPPFRRGLLEETINLLE  134 (183)
T ss_dssp             C-----------CCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred             c-----------ccccCEEEEcCccccchHHHHHHHHH
Confidence            1           24689999999997542 33344444

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.27  E-value=1.2e-11  Score=102.32  Aligned_cols=98  Identities=11%  Similarity=-0.009  Sum_probs=75.0

Q ss_pred             HHHHHHH--HcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126         39 LTDKIVR--NAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~--~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~  115 (240)
                      ++..|+.  .+.++||++|||+|||+|..+..++... .++|+|||+++.|++.++++++.. +|+.++.+|+...+...
T Consensus        42 laa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~  120 (209)
T d1nt2a_          42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYS  120 (209)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTT
T ss_pred             HHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-CCceEEEeeccCccccc
Confidence            4555553  3677899999999999999999999874 368999999999999999887654 68999999998765432


Q ss_pred             cchhhhcccccCCCCceEEEecCCCCCCHHHH
Q psy17126        116 MFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI  147 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il  147 (240)
                      ..          ....+.|+++++.......+
T Consensus       121 ~~----------~~~vd~v~~~~~~~~~~~~~  142 (209)
T d1nt2a_         121 GI----------VEKVDLIYQDIAQKNQIEIL  142 (209)
T ss_dssp             TT----------CCCEEEEEECCCSTTHHHHH
T ss_pred             cc----------cceEEEEEecccChhhHHHH
Confidence            11          12467788888766555443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=7.6e-12  Score=108.52  Aligned_cols=72  Identities=8%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      .++.+++.+++++|++|||||||+|.++..++++.+.+|+||++|+.+++.+++++...+  .++++...|...
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~  122 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE  122 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence            577889999999999999999999999999987645799999999999999988766543  678888888643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=7.1e-12  Score=104.79  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             ccCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC-------CCeEEEEeCCcchHHHHHHHHhcC-
Q psy17126         28 QLSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR-------PARLVLIEKDPRFTPCLDMLAQAS-   97 (240)
Q Consensus        28 ~~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~-------~~~V~avEid~~m~~~l~~~~~~~-   97 (240)
                      ..|| ++..|.+..++++.+  .++++++|||||||||.+|..|++..       ..+|++||+++++++.++++.... 
T Consensus        56 ~~~~-~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~  134 (223)
T d1r18a_          56 GGGV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD  134 (223)
T ss_dssp             ETTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             cCCc-eeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcc
Confidence            3566 778899999999988  78899999999999999999998752       138999999999999998865321 


Q ss_pred             -----CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCC
Q psy17126         98 -----PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus        98 -----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                           ..|+.++++|..+...+             .++||+|+.+-.
T Consensus       135 ~~~~~~~nv~~~~~d~~~~~~~-------------~~~fD~Iiv~~a  168 (223)
T d1r18a_         135 RSMLDSGQLLIVEGDGRKGYPP-------------NAPYNAIHVGAA  168 (223)
T ss_dssp             HHHHHHTSEEEEESCGGGCCGG-------------GCSEEEEEECSC
T ss_pred             hhhcCccEEEEEeccccccccc-------------ccceeeEEEEee
Confidence                 16899999998764221             246887776543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.22  E-value=1.7e-11  Score=103.07  Aligned_cols=79  Identities=16%  Similarity=0.063  Sum_probs=63.6

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ..++++|||||||+|..+..+++.+.++|+|||+|+.|++.|+++....+  .++.++++|+...++..           
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-----------   90 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----------   90 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----------
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-----------
Confidence            35789999999999999999998866789999999999999998765443  57999999997654421           


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                       .+++|+|+++.-
T Consensus        91 -~~~fD~V~~~~~  102 (252)
T d1ri5a_          91 -GKEFDVISSQFS  102 (252)
T ss_dssp             -SSCEEEEEEESC
T ss_pred             -cccceEEEEcce
Confidence             136899888643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.3e-11  Score=104.57  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-cCCCCeEEEEcccccccccccchh
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      +.|.+.....++++|||||||+|.++..+++.++.+|+|+|.++.|....+.... ...++++++++|+.++.++.    
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~----  100 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV----  100 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC----
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcc----
Confidence            3444444566889999999999999999999877799999999988754443322 23478999999999987543    


Q ss_pred             hhcccccCCCCceEEEecCCCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                               .++|+|++++..+
T Consensus       101 ---------~~~D~Ivse~~~~  113 (311)
T d2fyta1         101 ---------EKVDVIISEWMGY  113 (311)
T ss_dssp             ---------SCEEEEEECCCBT
T ss_pred             ---------ccceEEEEeeeee
Confidence                     3689999987744

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.21  E-value=2.3e-11  Score=104.32  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHc-CCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         36 EPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        36 d~~i~~~iv~~~-~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      +...+..+++.+ .+.+..+|||||||+|.++..+++..  ..+|+|+|+++.|++.++++....+.+++++++|+.+++
T Consensus        11 n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            566677777765 45677899999999999999999863  268999999999999999987766668999999998876


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCC-CCCHH
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTP  145 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~  145 (240)
                      +++              ++|.|+++--+ ++..|
T Consensus        91 ~~~--------------~fD~v~~~~~l~~~~d~  110 (281)
T d2gh1a1          91 LND--------------KYDIAICHAFLLHMTTP  110 (281)
T ss_dssp             CSS--------------CEEEEEEESCGGGCSSH
T ss_pred             ccC--------------CceEEEEehhhhcCCCH
Confidence            532              57888887653 45444

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=4.6e-11  Score=102.26  Aligned_cols=92  Identities=13%  Similarity=0.177  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM  109 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~  109 (240)
                      .+-|.-+..|+..+++.+|++|||+|||+|.+|..|++..  .++|+++|+++++++.++++++..+  +++.+..+|+.
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            4567788899999999999999999999999999999863  3699999999999999999887654  67888888874


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP  139 (240)
                      .. +..             ..+|.|+..+|
T Consensus       166 ~~-~~~-------------~~~D~V~~d~p  181 (266)
T d1o54a_         166 EG-FDE-------------KDVDALFLDVP  181 (266)
T ss_dssp             GC-CSC-------------CSEEEEEECCS
T ss_pred             cc-ccc-------------cceeeeEecCC
Confidence            42 111             35788988877

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-11  Score=106.18  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----------CCCCeEE
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----------SPCPVHF  103 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----------~~~~v~v  103 (240)
                      +....+..|++.++++++++|||||||+|.++..++... +.+++|||+++.|++.+++..+.          ...++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            467889999999999999999999999999999998764 46899999999999998875432          1368999


Q ss_pred             EEcccccccccc
Q psy17126        104 HLGDVMSFTMQN  115 (240)
Q Consensus       104 i~~D~~~~~~~~  115 (240)
                      +++|+.+.++.+
T Consensus       215 ~~gd~~~~~~~~  226 (328)
T d1nw3a_         215 ERGDFLSEEWRE  226 (328)
T ss_dssp             EECCTTSHHHHH
T ss_pred             EECccccccccc
Confidence            999999987654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=4.4e-11  Score=98.54  Aligned_cols=79  Identities=10%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      ++..++.... .++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.++++..     ..++++|+.++++++   
T Consensus        31 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~---  100 (246)
T d2avna1          31 LIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPS---  100 (246)
T ss_dssp             HHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCT---
T ss_pred             HHHHHHHHhc-CCCCEEEEECCCCchhcccccccc-eEEEEeecccccccccccccc-----ccccccccccccccc---
Confidence            3344444333 367899999999999999999985 699999999999999987431     236789999887543   


Q ss_pred             hhhcccccCCCCceEEEec
Q psy17126        119 EDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsN  137 (240)
                                +.+|.|++.
T Consensus       101 ----------~~fD~ii~~  109 (246)
T d2avna1         101 ----------GAFEAVLAL  109 (246)
T ss_dssp             ----------TCEEEEEEC
T ss_pred             ----------ccccceeee
Confidence                      468988864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=5.1e-11  Score=98.27  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ..++.+|||||||||.+|..|++..   ..+|+|||+|+.|++.++++.....  .+++++.+|+.++++.         
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~---------  107 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK---------  107 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCC---------
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccc---------
Confidence            3578899999999999999999742   3699999999999999999776543  5788899999876543         


Q ss_pred             cccCCCCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126        124 DWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAIS  155 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~  155 (240)
                            .+|.|+++.= ..++.+-..++++++.
T Consensus       108 ------~~d~i~~~~~l~~~~~~d~~~~l~~i~  134 (225)
T d1im8a_         108 ------NASMVILNFTLQFLPPEDRIALLTKIY  134 (225)
T ss_dssp             ------SEEEEEEESCGGGSCGGGHHHHHHHHH
T ss_pred             ------cceeeEEeeeccccChhhHHHHHHHHH
Confidence                  2455666543 2344333445555443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6e-11  Score=104.28  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhc------------CCCC
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQA------------SPCP  100 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~------------~~~~  100 (240)
                      +-+.-+..|+..+++.+|++|||+|||+|++|..|++..  .++|+++|+++++++.++++.+.            ..+|
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            456678889999999999999999999999999999863  36999999999999999987653            2368


Q ss_pred             eEEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      +.++++|+.+.... + .         ...+|.||-.+|-
T Consensus       162 v~~~~~di~~~~~~-~-~---------~~~fD~V~LD~p~  190 (324)
T d2b25a1         162 VDFIHKDISGATED-I-K---------SLTFDAVALDMLN  190 (324)
T ss_dssp             EEEEESCTTCCC------------------EEEEEECSSS
T ss_pred             eeEEecchhhcccc-c-C---------CCCcceEeecCcC
Confidence            99999999875321 1 1         1357888888773

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=4.6e-11  Score=104.53  Aligned_cols=84  Identities=13%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchh
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      .|.+.....++.+|||||||+|.++..+++.++.+|+|+|.++ ++..++++....  ..+++++++|+.++++++    
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~----  103 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF----  103 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS----
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc----
Confidence            3444444457899999999999999999998777999999996 667777655443  378999999999887653    


Q ss_pred             hhcccccCCCCceEEEecCC
Q psy17126        120 DRRRDWSEGLPGIRIIGNLP  139 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlP  139 (240)
                               .++|.|++++.
T Consensus       104 ---------~~~D~i~se~~  114 (328)
T d1g6q1_         104 ---------PKVDIIISEWM  114 (328)
T ss_dssp             ---------SCEEEEEECCC
T ss_pred             ---------cceeEEEEEec
Confidence                     36799998765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=2.4e-11  Score=106.68  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~  110 (240)
                      |..|..-....+... +.++.+|||+|||+|.++..++..++.+|+++|+++.+++.+++|+...+  ++++++++|+.+
T Consensus       128 ~flDqr~~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~  206 (324)
T d2as0a2         128 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  206 (324)
T ss_dssp             CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cccchhhHHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh
Confidence            444544444444332 35789999999999999999998876799999999999999999887654  578999999976


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      .- ..+..        .+.+||.||.|+|+...+
T Consensus       207 ~~-~~~~~--------~~~~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         207 EM-EKLQK--------KGEKFDIVVLDPPAFVQH  231 (324)
T ss_dssp             HH-HHHHH--------TTCCEEEEEECCCCSCSS
T ss_pred             hh-HHHHh--------ccCCCCchhcCCccccCC
Confidence            42 11111        125799999999987654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=4.4e-11  Score=104.32  Aligned_cols=101  Identities=10%  Similarity=0.052  Sum_probs=76.6

Q ss_pred             hccCccccCCHHHHHHHHHH----cCCCCCCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         27 KQLSQNFLFEPRLTDKIVRN----AGTITGNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        27 k~~gQ~fl~d~~i~~~iv~~----~~~~~~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      ...|| +++++.++..|+..    +...++.+|+|.|||+|.+...+..+.      ..+++|+|+|+.++..++.+...
T Consensus        90 ~~~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~  168 (328)
T d2f8la1          90 IQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  168 (328)
T ss_dssp             CCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH
Confidence            34566 66888877766654    355677899999999999998887531      14799999999999998887654


Q ss_pred             CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ...+..+.++|.......              .++|.||+||||..
T Consensus       169 ~~~~~~~~~~d~~~~~~~--------------~~fD~vi~NPPy~~  200 (328)
T d2f8la1         169 QRQKMTLLHQDGLANLLV--------------DPVDVVISDLPVGY  200 (328)
T ss_dssp             HTCCCEEEESCTTSCCCC--------------CCEEEEEEECCCSE
T ss_pred             hhhhhhhhcccccccccc--------------ccccccccCCCCCC
Confidence            456778888887654321              36899999999964

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.15  E-value=4.9e-11  Score=108.00  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--------------CCeEEEEeCC
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--------------PARLVLIEKD   83 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--------------~~~V~avEid   83 (240)
                      +.+++-..++..|| |.+++.+++.|++.+.+.++.+|+|.+||+|.+...+.++.              ...++|+|++
T Consensus       130 l~~~~~~~~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~  208 (425)
T d2okca1         130 LEKNGQDKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  208 (425)
T ss_dssp             HHHHHTCTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             HHHHHHhhhccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc
Confidence            44444455777899 77999999999999998889999999999999998877642              0259999999


Q ss_pred             cchHHHHHHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         84 PRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        84 ~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +.+...++.++--.+   .+..+.++|.+..+.              ..++|+||+||||+.
T Consensus       209 ~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~--------------~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         209 PLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP--------------STLVDVILANPPFGT  256 (425)
T ss_dssp             HHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC--------------SSCEEEEEECCCSSC
T ss_pred             HHHHHHHHhhhhhcCCccccceeecCchhhhhc--------------ccccceEEecCCCCC
Confidence            999998887643222   356677888875332              136899999999965

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.3e-11  Score=97.22  Aligned_cols=106  Identities=9%  Similarity=-0.120  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc------------------
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA------------------   96 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~------------------   96 (240)
                      .++.+++.+.+.+.+.++.+|||+|||+|..+..|++.+ .+|+|||+|+.+++.++++...                  
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRG-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            467778888888888889999999999999999999986 6999999999999998875421                  


Q ss_pred             CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126         97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA  153 (240)
Q Consensus        97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~  153 (240)
                      ...+++++++|+.+++...            .+.+|.|+..-- ..+..+...+++..
T Consensus       108 ~~~~v~~~~~d~~~l~~~~------------~~~fd~i~~~~~l~~~~~~~r~~~~~~  153 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTN------------IGKFDMIWDRGALVAINPGDRKCYADT  153 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSC------------CCCEEEEEESSSTTTSCGGGHHHHHHH
T ss_pred             cCCcEEEEEcchhhccccc------------cCceeEEEEEEEEEeccchhhHHHHHH
Confidence            1257899999998765322            135777765433 23433344444443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.13  E-value=3.8e-11  Score=99.26  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ..+.+|||||||+|.++..+++.+ .+|+|||+|++|++.++++.   ..+++++++|+.+++++              +
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~---~~~~~~~~~~~~~~~~~--------------~   80 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRL---KDGITYIHSRFEDAQLP--------------R   80 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHS---CSCEEEEESCGGGCCCS--------------S
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhccc---ccccccccccccccccc--------------c
Confidence            356789999999999999999885 68999999999999998753   36799999999886543              3


Q ss_pred             CceEEEecCCC-CCCHHH
Q psy17126        130 PGIRIIGNLPF-NVSTPL  146 (240)
Q Consensus       130 ~~~~VvsNlPY-~Iss~i  146 (240)
                      ++|.|+++--. ++..|.
T Consensus        81 ~fD~I~~~~vleh~~d~~   98 (225)
T d2p7ia1          81 RYDNIVLTHVLEHIDDPV   98 (225)
T ss_dssp             CEEEEEEESCGGGCSSHH
T ss_pred             ccccccccceeEecCCHH
Confidence            57877776442 445544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=6.9e-11  Score=102.96  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccccccccchhhhccccc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTMQNMFSEDRRRDWS  126 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~  126 (240)
                      ..++++|||||||+|.++..+++.++.+|+|||.++.+ ..++++...  ..++++++++|+.+++++.           
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~-----------   98 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPV-----------   98 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSS-----------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccccc-----------
Confidence            34789999999999999999999877799999999765 455554333  3478999999999987643           


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        .++|.|+++...
T Consensus        99 --~~~D~ivs~~~~  110 (316)
T d1oria_          99 --EKVDIIISEWMG  110 (316)
T ss_dssp             --SCEEEEEECCCB
T ss_pred             --ceeEEEeeeeee
Confidence              367999987663

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=3e-11  Score=105.86  Aligned_cols=100  Identities=10%  Similarity=0.046  Sum_probs=76.7

Q ss_pred             cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      .+..|......+++.   .+|++|||+|||+|.++..++.. +.+|+++|+|+.+++.++++++..+ ++++++++|+.+
T Consensus       129 G~flDqr~~r~~~~~---~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~  204 (318)
T d1wxxa2         129 GAYLDQRENRLYMER---FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD  204 (318)
T ss_dssp             CCCGGGHHHHHHGGG---CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH
T ss_pred             ccchhhhhhHHHHHH---hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHH
Confidence            356666666555433   36899999999999999998865 5799999999999999999987665 689999999977


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST  144 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss  144 (240)
                      +. ..+..        .+.+||.||.|+|+...+
T Consensus       205 ~~-~~~~~--------~~~~fD~Vi~DpP~~~~~  229 (318)
T d1wxxa2         205 LL-RRLEK--------EGERFDLVVLDPPAFAKG  229 (318)
T ss_dssp             HH-HHHHH--------TTCCEEEEEECCCCSCCS
T ss_pred             Hh-hhhHh--------hhcCCCEEEEcCCccccc
Confidence            42 11111        125799999999976544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.10  E-value=2.8e-10  Score=95.18  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .+++.|...   +.+++|++|||+|||+|..+..++..+ .+.|+|||+|+.|++.+++++.. .+++..+.+|+....
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-~~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-RENIIPILGDANKPQ  135 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-CTTEEEEECCTTCGG
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-hcccceEEEeeccCc
Confidence            456666553   457899999999999999999999975 36999999999999999887654 378889999988754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.7e-10  Score=100.28  Aligned_cols=117  Identities=11%  Similarity=0.027  Sum_probs=89.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126         38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~  116 (240)
                      .+++.+++++...++++|||+-||+|.+|..|++. +.+|+|||.++.+++.|++++...+ .|++++.+|+.+.-....
T Consensus       199 ~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~  277 (358)
T d1uwva2         199 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  277 (358)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh
Confidence            34555666778888999999999999999999997 4799999999999999999877655 789999999877421111


Q ss_pred             chhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc----cccccchh
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHK  164 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~----~~~~~~~~  164 (240)
                      .         ....+|.||-+||-.=....+..++.....    ..|.+.-+
T Consensus       278 ~---------~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl  320 (358)
T d1uwva2         278 W---------AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL  320 (358)
T ss_dssp             G---------GTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred             h---------hhccCceEEeCCCCccHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence            1         114579999999987777777777764433    34665443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=2.3e-10  Score=95.64  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             HHHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         38 RLTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        38 ~i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      .+...|+.   .+++++|++|||+|||+|.+|..|+...  .++|+|||+++.|++.++++++.. +++..+.+|+....
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-~~~~~i~~d~~~~~  135 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPE  135 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGG
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-CCceEEEEECCCcc
Confidence            45566654   3468899999999999999999999863  379999999999999999877543 67888999987643


Q ss_pred             ccccchhhhcccccCCCCceEEEecCCCCCCHHHHHH
Q psy17126        113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIK  149 (240)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~  149 (240)
                      .....          ...+|.|+.++|..-....+.+
T Consensus       136 ~~~~~----------~~~vD~i~~d~~~~~~~~~~l~  162 (227)
T d1g8aa_         136 EYRAL----------VPKVDVIFEDVAQPTQAKILID  162 (227)
T ss_dssp             GGTTT----------CCCEEEEEECCCSTTHHHHHHH
T ss_pred             ccccc----------ccceEEEEEEccccchHHHHHH
Confidence            21111          1357889999887655444433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.2e-10  Score=96.69  Aligned_cols=74  Identities=18%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      ..+...+++.+. .+|.+|||||||+|..+..+++..+.+|++||+|+.|++.++++......++.++.+|+...
T Consensus        40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~  113 (229)
T d1zx0a1          40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV  113 (229)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred             HHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccc
Confidence            345555655554 57889999999999999999987557999999999999999998776667788888888764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.3e-10  Score=97.39  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ++..+.+... .++.+|||||||+|.++..+++..+ .+++|||+|+.|++.++++    .++++++++|+.++++++  
T Consensus        73 ~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----~~~~~~~~~d~~~l~~~~--  145 (268)
T d1p91a_          73 IVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----YPQVTFCVASSHRLPFSD--  145 (268)
T ss_dssp             HHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----CTTSEEEECCTTSCSBCT--
T ss_pred             HHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----cccccceeeehhhccCCC--
Confidence            3344444433 4678999999999999999998753 6999999999999998764    267999999999988754  


Q ss_pred             hhhhcccccCCCCceEEEecC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNl  138 (240)
                                 +.+|.|+++.
T Consensus       146 -----------~sfD~v~~~~  155 (268)
T d1p91a_         146 -----------TSMDAIIRIY  155 (268)
T ss_dssp             -----------TCEEEEEEES
T ss_pred             -----------CCEEEEeecC
Confidence                       3678888764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=1.8e-10  Score=94.02  Aligned_cols=101  Identities=14%  Similarity=0.086  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM  113 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~  113 (240)
                      +-|-+++.+++.+.+.++..+||++||+|..|..++++. .++|+|+|.|+.|++.++++...+..+++++++++.+++.
T Consensus         7 H~pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~   86 (192)
T d1m6ya2           7 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF   86 (192)
T ss_dssp             CCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred             CCchHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHH
Confidence            346678889999999999999999999999999999974 3799999999999999999887777899999999987542


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~  145 (240)
                        +...      .+..++|.|+..|.+  ||+
T Consensus        87 --~~~~------~~~~~vdgIl~DlGv--Ss~  108 (192)
T d1m6ya2          87 --LLKT------LGIEKVDGILMDLGV--STY  108 (192)
T ss_dssp             --HHHH------TTCSCEEEEEEECSC--CHH
T ss_pred             --HHHH------cCCCCcceeeeccch--hHh
Confidence              1111      011468999988775  554

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.03  E-value=1.9e-10  Score=93.84  Aligned_cols=87  Identities=24%  Similarity=0.253  Sum_probs=70.6

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF  111 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~  111 (240)
                      .+++.+++.|++.+...++.+|||.|||+|.++..+.++.  ...++|+|+++..+..        ..+..++++|....
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------PPWAEGILADFLLW   73 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------CTTEEEEESCGGGC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------cccceeeeeehhcc
Confidence            4788999999999999999999999999999998887652  3679999999876432        23467889998775


Q ss_pred             cccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +..              ..+|.|++|+||..
T Consensus        74 ~~~--------------~~fd~ii~npP~~~   90 (223)
T d2ih2a1          74 EPG--------------EAFDLILGNPPYGI   90 (223)
T ss_dssp             CCS--------------SCEEEEEECCCCCC
T ss_pred             ccc--------------cccceecccCcccc
Confidence            432              35899999999965

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.99  E-value=7.1e-10  Score=96.94  Aligned_cols=100  Identities=11%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             ccCCHH-HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEccc
Q psy17126         33 FLFEPR-LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~-i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~  108 (240)
                      |..|.. ....+++.  ..+|.+|||++||+|.++..++..++.+|++||+|+.+++.++++++..+   .+++++++|+
T Consensus       127 lflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         127 IFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            445544 44556554  34789999999999999999888766799999999999999999876433   5799999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      .++ +..+..        .+.+||.||.+||....
T Consensus       205 ~~~-l~~~~~--------~~~~fD~Ii~DPP~f~~  230 (317)
T d2b78a2         205 FDY-FKYARR--------HHLTYDIIIIDPPSFAR  230 (317)
T ss_dssp             HHH-HHHHHH--------TTCCEEEEEECCCCC--
T ss_pred             HHH-HHHHHh--------hcCCCCEEEEcChhhcc
Confidence            764 222111        12479999999995443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=4.5e-10  Score=96.17  Aligned_cols=73  Identities=5%  Similarity=-0.023  Sum_probs=54.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-----CCeEEEEccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-----CPVHFHLGDVMSFT  112 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-----~~v~vi~~D~~~~~  112 (240)
                      ..+.+.+.+...++.+|||||||+|.++..|++++ .+|+|||+|+.|++.|+++.....     .+..+...|+...+
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence            33445555555667899999999999999999985 699999999999999988765432     23445566665543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=4.4e-10  Score=90.65  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccccccccccchhhhcccccC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSE  127 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~  127 (240)
                      .+.+|||+.||||+++..++++|+.+|+.||.|...+..++++++..+   ....++..|+.++--..         + .
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~---------~-~  112 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP---------Q-N  112 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC---------C-S
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccc---------c-c
Confidence            578999999999999999999998899999999999999999987654   35777888876532111         1 1


Q ss_pred             CCCceEEEecCCCCCC
Q psy17126        128 GLPGIRIIGNLPFNVS  143 (240)
Q Consensus       128 ~~~~~~VvsNlPY~Is  143 (240)
                      ..++|+|+..|||.-.
T Consensus       113 ~~~fDlIFlDPPY~~~  128 (183)
T d2ifta1         113 QPHFDVVFLDPPFHFN  128 (183)
T ss_dssp             SCCEEEEEECCCSSSC
T ss_pred             CCcccEEEechhHhhh
Confidence            1468999999999764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=5.3e-10  Score=90.46  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      .++.+|||||||+|.++..+     .+++|||+|+.|++.+++      .+++++++|+.++++++             +
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~------~~~~~~~~d~~~l~~~~-------------~   90 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARK------RGVFVLKGTAENLPLKD-------------E   90 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHH------TTCEEEECBTTBCCSCT-------------T
T ss_pred             CCCCeEEEECCCCccccccc-----ceEEEEeCChhhcccccc------ccccccccccccccccc-------------c
Confidence            35668999999999998776     257899999999999875      36899999999887543             4


Q ss_pred             CceEEEecCC-CCCCH
Q psy17126        130 PGIRIIGNLP-FNVST  144 (240)
Q Consensus       130 ~~~~VvsNlP-Y~Iss  144 (240)
                      ++|.|+++.- .+++.
T Consensus        91 ~fD~I~~~~~l~h~~d  106 (208)
T d1vlma_          91 SFDFALMVTTICFVDD  106 (208)
T ss_dssp             CEEEEEEESCGGGSSC
T ss_pred             cccccccccccccccc
Confidence            6888888754 34444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.93  E-value=5e-09  Score=87.88  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQN  115 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~  115 (240)
                      .+..+++..+..+..+|||||||+|.++..++++.+ .+++++|+ +.+++.++++....  .++++++.+|+.+.. + 
T Consensus        68 ~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~-  144 (253)
T d1tw3a2          68 AFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-P-  144 (253)
T ss_dssp             TTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S-
T ss_pred             HHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-c-
Confidence            345677777877889999999999999999999863 68999998 67899888876554  378999999986532 1 


Q ss_pred             cchhhhcccccCCCCceEEE-ecCCCCCCHHHHHHHHHhcc
Q psy17126        116 MFSEDRRRDWSEGLPGIRII-GNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~Vv-sNlPY~Iss~il~~ll~~~~  155 (240)
                                   .++|+|+ ++.-++.+.+...++|.+..
T Consensus       145 -------------~~~D~v~~~~vlh~~~d~~~~~~L~~~~  172 (253)
T d1tw3a2         145 -------------RKADAIILSFVLLNWPDHDAVRILTRCA  172 (253)
T ss_dssp             -------------SCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             -------------cchhheeeccccccCCchhhHHHHHHHH
Confidence                         1356555 44445667666556665543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.92  E-value=4.3e-10  Score=98.01  Aligned_cols=100  Identities=12%  Similarity=0.009  Sum_probs=72.6

Q ss_pred             ccCCH-HHHHHHHHHc-CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--C-CCeEEEEcc
Q psy17126         33 FLFEP-RLTDKIVRNA-GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--P-CPVHFHLGD  107 (240)
Q Consensus        33 fl~d~-~i~~~iv~~~-~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~-~~v~vi~~D  107 (240)
                      |..|. .....+.+.+ ...++.+|||++||||.++..++..+ ++|++||.|+.+++.+++|++..  . .+++++++|
T Consensus       112 ~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D  190 (309)
T d2igta1         112 VFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED  190 (309)
T ss_dssp             CCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred             cccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCC-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCC
Confidence            33343 3334443333 23467899999999999999999875 59999999999999999987543  2 469999999


Q ss_pred             cccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      +.++ +......        +..||.||.+||...
T Consensus       191 ~~~~-l~~~~~~--------~~~fD~IilDPP~f~  216 (309)
T d2igta1         191 AMKF-IQREERR--------GSTYDIILTDPPKFG  216 (309)
T ss_dssp             HHHH-HHHHHHH--------TCCBSEEEECCCSEE
T ss_pred             HHHh-HHHHhhc--------CCCCCEEEECCCccc
Confidence            9875 2221111        247899999999643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.92  E-value=1.9e-09  Score=88.43  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      ....|||||||+|.++..+|+..+ ..++|||+++.++..+.+++...+ .|+.++++|+.++.  +.++.         
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~--~~~~~---------   99 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--DYFED---------   99 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--GTSCT---------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh--hhccC---------
Confidence            345899999999999999999863 789999999999998877665444 78999999998753  33322         


Q ss_pred             CCceEEEecCC
Q psy17126        129 LPGIRIIGNLP  139 (240)
Q Consensus       129 ~~~~~VvsNlP  139 (240)
                      ...+.|+.|-|
T Consensus       100 ~~~~~i~i~fP  110 (204)
T d1yzha1         100 GEIDRLYLNFS  110 (204)
T ss_dssp             TCCSEEEEESC
T ss_pred             Cceehhccccc
Confidence            35677877776

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=1.7e-09  Score=88.83  Aligned_cols=61  Identities=18%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF  111 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~  111 (240)
                      ....|||||||+|..+..+|+..+ ..++|||+++.++..+.+++...+ .|+.++++|+..+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l   91 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL   91 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh
Confidence            345899999999999999999863 799999999999999988776555 7899999999875

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.2e-09  Score=101.30  Aligned_cols=112  Identities=12%  Similarity=0.027  Sum_probs=71.8

Q ss_pred             HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-------------------CCeEE
Q psy17126         18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-------------------PARLV   78 (240)
Q Consensus        18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-------------------~~~V~   78 (240)
                      ++.+.-..++..|| |.|++.+++.|++.+.+.++.+|+|.+||+|.+...+.+..                   ...++
T Consensus       132 l~~~~~~~~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  210 (524)
T d2ar0a1         132 LQKNANETKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  210 (524)
T ss_dssp             -------------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             HHHHHhhhccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhh
Confidence            33444456777899 88999999999999999899999999999999987765531                   02689


Q ss_pred             EEeCCcchHHHHHHHHhcCCCCe------EEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126         79 LIEKDPRFTPCLDMLAQASPCPV------HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus        79 avEid~~m~~~l~~~~~~~~~~v------~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      |+|+++.+...++-++--.+...      .+..++.+..+            +....++|+||+||||..
T Consensus       211 G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d------------~~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         211 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD------------GENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             EEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHH------------HHTSCCEEEEEECCCCTT
T ss_pred             hhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhc------------ccccccceeEEecCCccc
Confidence            99999999988887653222111      22233332211            112247999999999964

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=4.7e-09  Score=94.50  Aligned_cols=61  Identities=11%  Similarity=0.062  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~   95 (240)
                      +.+..+..|++.++++++++|||||||+|.++..+|... +++|+|||+++.|++.++++.+
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999763 4689999999999999988654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.75  E-value=3.3e-08  Score=83.21  Aligned_cols=100  Identities=16%  Similarity=0.100  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccccc
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~  116 (240)
                      +..+++..++....+|||||||+|.++..++++.+ .+++++|+ +.+++.++++....+  ++++++.+|+.+ +++. 
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-  146 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-  146 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-
Confidence            45567777777788999999999999999999864 69999998 788888888765443  789999999875 2221 


Q ss_pred             chhhhcccccCCCCceE-EEecCCCCCCHHHHHHHHHhcc
Q psy17126        117 FSEDRRRDWSEGLPGIR-IIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~-VvsNlPY~Iss~il~~ll~~~~  155 (240)
                                   .+|+ ++++.-++.+.+-..++|++..
T Consensus       147 -------------~~D~v~~~~vLh~~~d~~~~~lL~~i~  173 (256)
T d1qzza2         147 -------------TADVVLLSFVLLNWSDEDALTILRGCV  173 (256)
T ss_dssp             -------------CEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             -------------cchhhhccccccccCcHHHHHHHHHHH
Confidence                         2444 5556656677666666666543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.3e-08  Score=84.27  Aligned_cols=49  Identities=14%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      ..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.+++++...
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhc
Confidence            3467899999999999998887765568999999999999999877543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=77.40  Aligned_cols=101  Identities=11%  Similarity=0.037  Sum_probs=73.4

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV  108 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~  108 (240)
                      ..+.+...+.+...+.....++|||||||+|.-|..++...  .++|+++|.++...+.++++.+..+  ++++++.||+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            34566654444444444556899999999999999999863  3799999999999999999876544  7899999999


Q ss_pred             ccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      .+.- +.+...      ...+++|.|+.+--.
T Consensus       121 ~e~l-~~~~~~------~~~~~fD~ifiD~dk  145 (219)
T d2avda1         121 LETL-DELLAA------GEAGTFDVAVVDADK  145 (219)
T ss_dssp             HHHH-HHHHHT------TCTTCEEEEEECSCS
T ss_pred             hhcc-hhhhhh------cccCCccEEEEeCCH
Confidence            7742 222211      012468999987654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9.4e-09  Score=86.91  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-------CCeEEEEeCCcchHHHHHHHHhcCC--CCeE--EEEcccccccccccch
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-------PARLVLIEKDPRFTPCLDMLAQASP--CPVH--FHLGDVMSFTMQNMFS  118 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-------~~~V~avEid~~m~~~l~~~~~~~~--~~v~--vi~~D~~~~~~~~~~~  118 (240)
                      ++..+|||||||+|.++..++...       ..+++|||+++.|++.++++.....  .++.  +.+.++..+.....  
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML--  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT--
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc--
Confidence            344589999999999999887641       1368999999999999998765432  3333  33333332210000  


Q ss_pred             hhhcccccCCCCceEEEecCC-CCCCH
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLP-FNVST  144 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlP-Y~Iss  144 (240)
                          . ....++||+|++.-- +++..
T Consensus       117 ----~-~~~~~~fD~I~~~~~l~~~~d  138 (280)
T d1jqea_         117 ----E-KKELQKWDFIHMIQMLYYVKD  138 (280)
T ss_dssp             ----T-SSSCCCEEEEEEESCGGGCSC
T ss_pred             ----c-cCCCCceeEEEEccceecCCC
Confidence                0 011257898888655 45544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.1e-07  Score=78.11  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF  111 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~  111 (240)
                      ++..+++..   ...+|||||||+|.-|..+++..  .++|+++|+++.+++.++++.+..+  ++++++.||+.++
T Consensus        47 lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~  120 (214)
T d2cl5a1          47 IMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL  120 (214)
T ss_dssp             HHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc
Confidence            555666554   34699999999999999999853  3799999999999999998775543  6899999999875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.5e-07  Score=79.11  Aligned_cols=49  Identities=14%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126         48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      +...+.+|||||||+|.++...+.....+|+|+|+++.|++.+++++..
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            3456889999999999988665554457999999999999999886643

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.28  E-value=1.3e-06  Score=69.94  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM  116 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~  116 (240)
                      |-+++.+++.+.+.++..++|..+|.|..|..+++.. ++|+|+|.|+.++..+++.   ...++.++++++.+++  +.
T Consensus         4 pVll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~--~~   77 (182)
T d1wg8a2           4 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLK--RH   77 (182)
T ss_dssp             CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHH--HH
T ss_pred             chHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHH--HH
Confidence            4467788888999999999999999999999999985 7999999999999988763   3478999999998753  22


Q ss_pred             chhhhcccccCCCCceEEEecCCC
Q psy17126        117 FSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      ....      +.+.+|.|+..|-+
T Consensus        78 l~~~------~~~~vdgIl~DLGv   95 (182)
T d1wg8a2          78 LAAL------GVERVDGILADLGV   95 (182)
T ss_dssp             HHHT------TCSCEEEEEEECSC
T ss_pred             HHHc------CCCccCEEEEEccC
Confidence            2110      11457999999854

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.2e-06  Score=72.28  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             HHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126         41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~  117 (240)
                      ...+..+...+|++|||+++|+|.=|..++..  ..++|+|+|+++.-+..+++++++.+ .++.+...|+..++.....
T Consensus        84 ~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~  163 (293)
T d2b9ea1          84 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR  163 (293)
T ss_dssp             GHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred             cccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccc
Confidence            33455668889999999999999999988864  24789999999999999999888776 7899999999886533211


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCC
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                                .+.+|.|+...|=.-+
T Consensus       164 ----------~~~fD~VL~DaPCSg~  179 (293)
T d2b9ea1         164 ----------YHEVHYILLDPSCSGS  179 (293)
T ss_dssp             ----------GTTEEEEEECCCCCC-
T ss_pred             ----------cceeeEEeecCcccch
Confidence                      1368999999995433

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.12  E-value=2.2e-06  Score=70.86  Aligned_cols=96  Identities=7%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             cCCHH---HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEc
Q psy17126         34 LFEPR---LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLG  106 (240)
Q Consensus        34 l~d~~---i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~  106 (240)
                      .+.+.   ++..+++..   ...+|||||+|+|.-|..++...  .++|+++|.++...+.++++.+..+  +++++++|
T Consensus        42 ~~~~~~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g  118 (227)
T d1susa1          42 TTSADEGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG  118 (227)
T ss_dssp             SCCHHHHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             ccCHHHHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence            35554   444555544   45799999999999999999753  3799999999999999999876654  78999999


Q ss_pred             ccccccccccchhhhcccccCCCCceEEEecC
Q psy17126        107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL  138 (240)
Q Consensus       107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl  138 (240)
                      |+.++ ++++...     -...+++|.|+-.-
T Consensus       119 ~a~~~-L~~l~~~-----~~~~~~fD~iFiDa  144 (227)
T d1susa1         119 PALPV-LDEMIKD-----EKNHGSYDFIFVDA  144 (227)
T ss_dssp             CHHHH-HHHHHHC-----GGGTTCBSEEEECS
T ss_pred             HHHHH-HHHHHhc-----cccCCceeEEEecc
Confidence            99875 3333211     00114688888764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.00  E-value=4.8e-06  Score=70.65  Aligned_cols=80  Identities=20%  Similarity=0.247  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-----------CCCCeEEEEcccccccccccch
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-----------SPCPVHFHLGDVMSFTMQNMFS  118 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-----------~~~~v~vi~~D~~~~~~~~~~~  118 (240)
                      .+..+||-||.|.|..+..+++....+|++||+|+.+++.+++....           ..++++++.+|+.++ +..   
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-l~~---  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-IKN---  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-HHH---
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-Hhc---
Confidence            45679999999999999999887557999999999999999874321           137899999999764 111   


Q ss_pred             hhhcccccCCCCceEEEecCCCCC
Q psy17126        119 EDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                               ..++|+||..++-..
T Consensus       147 ---------~~~yDvIi~D~~~~~  161 (276)
T d1mjfa_         147 ---------NRGFDVIIADSTDPV  161 (276)
T ss_dssp             ---------CCCEEEEEEECCCCC
T ss_pred             ---------cCCCCEEEEeCCCCC
Confidence                     146899999887544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=2.1e-05  Score=67.74  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc------CCCCeEEEEcccccccccccchhhhc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA------SPCPVHFHLGDVMSFTMQNMFSEDRR  122 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~------~~~~v~vi~~D~~~~~~~~~~~~~~~  122 (240)
                      ...++||.||.|.|.++..+++.. ..+|++||+|+.+++.+++....      ..++++++.+|+.++ +...      
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-l~~~------  148 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LERT------  148 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HHHC------
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-hhhc------
Confidence            355799999999999999998864 36999999999999999885421      137899999999875 2111      


Q ss_pred             ccccCCCCceEEEecC
Q psy17126        123 RDWSEGLPGIRIIGNL  138 (240)
Q Consensus       123 ~~~~~~~~~~~VvsNl  138 (240)
                           ..++|+||..+
T Consensus       149 -----~~~yDvIi~D~  159 (312)
T d1uira_         149 -----EERYDVVIIDL  159 (312)
T ss_dssp             -----CCCEEEEEEEC
T ss_pred             -----CCcccEEEEeC
Confidence                 14689998766

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.2e-05  Score=61.06  Aligned_cols=86  Identities=22%  Similarity=0.265  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccc
Q psy17126         37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQ  114 (240)
Q Consensus        37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~  114 (240)
                      +++++.+.- +..-++.+|+|||+|.|-=+..++-..+ .+|+.+|.+..-+..+++....++ .|+++++++++++...
T Consensus        52 rHi~DSl~~-~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~  130 (207)
T d1jsxa_          52 RHILDSIVV-APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE  130 (207)
T ss_dssp             HHHHHHHHH-GGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC
T ss_pred             HHhcchHhh-hhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccc
Confidence            444554432 2333567999999999999999987544 699999999999998888776666 6899999999986421


Q ss_pred             ccchhhhcccccCCCCceEEEec
Q psy17126        115 NMFSEDRRRDWSEGLPGIRIIGN  137 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~VvsN  137 (240)
                                    .++|.|++-
T Consensus       131 --------------~~fD~V~sR  139 (207)
T d1jsxa_         131 --------------PPFDGVISR  139 (207)
T ss_dssp             --------------SCEEEEECS
T ss_pred             --------------cccceehhh
Confidence                          257888874

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=6.1e-05  Score=64.69  Aligned_cols=94  Identities=11%  Similarity=0.030  Sum_probs=71.3

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      .++.......+..+.+.+|++|||++||+|.=|..++...  .+.++|+|+++.-+..++++..+.+ .++.+++.|...
T Consensus        99 ~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~  178 (313)
T d1ixka_          99 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH  178 (313)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG
T ss_pred             EEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc
Confidence            3333334455666788999999999999999999888753  3689999999999988888776655 678888888876


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY  140 (240)
                      ++...             ..||.|+-..|=
T Consensus       179 ~~~~~-------------~~fD~ILvDaPC  195 (313)
T d1ixka_         179 IGELN-------------VEFDKILLDAPC  195 (313)
T ss_dssp             GGGGC-------------CCEEEEEEECCT
T ss_pred             ccccc-------------ccccEEEEcccc
Confidence            54211             357888888773

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.71  E-value=8.2e-05  Score=61.63  Aligned_cols=96  Identities=13%  Similarity=0.159  Sum_probs=66.0

Q ss_pred             HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      +..+++... .....+|||||||+|.++..++++.+ .+++.+|+- ..++.     ....++++++.+|+.+- ++.  
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~-----~~~~~ri~~~~gd~~~~-~p~--  139 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIEN-----APPLSGIEHVGGDMFAS-VPQ--  139 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT-----CCCCTTEEEEECCTTTC-CCC--
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhc-----cCCCCCeEEecCCcccc-ccc--
Confidence            455666666 45668999999999999999999864 688999873 33221     11237899999998652 221  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                                  ...+++++.=++.+.....++|.....
T Consensus       140 ------------~D~~~l~~vLh~~~de~~~~iL~~~~~  166 (244)
T d1fp1d2         140 ------------GDAMILKAVCHNWSDEKCIEFLSNCHK  166 (244)
T ss_dssp             ------------EEEEEEESSGGGSCHHHHHHHHHHHHH
T ss_pred             ------------ceEEEEehhhhhCCHHHHHHHHHHHHH
Confidence                        224567777777777776677766543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.71  E-value=8.9e-06  Score=68.08  Aligned_cols=88  Identities=10%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             HcCCCCCCEEEEECCchhHHHHHHHhhC-----------------------------------------CCeEEEEeCCc
Q psy17126         46 NAGTITGNEVCEVGPGPGSITRSILNRR-----------------------------------------PARLVLIEKDP   84 (240)
Q Consensus        46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~-----------------------------------------~~~V~avEid~   84 (240)
                      ..+...+..++|.-||+|++.+..+-..                                         ...++|.|+|+
T Consensus        45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~  124 (249)
T d1o9ga_          45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL  124 (249)
T ss_dssp             TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence            3455666789999999999987665421                                         02457888888


Q ss_pred             chHHHHH---HHHhcC--CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126         85 RFTPCLD---MLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN  141 (240)
Q Consensus        85 ~m~~~l~---~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~  141 (240)
                      ++++.++   +++...  ...+++.++|+.+......+        ..+..+.+||+||||.
T Consensus       125 ~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~--------~~~~~~GlIVtNPPYG  178 (249)
T d1o9ga_         125 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV--------LAGSAPDVVLTDLPYG  178 (249)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH--------HTTCCCSEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhc--------cCCCCCCEEEeCCCcc
Confidence            8888874   354443  36789999998765321111        1123568999999994

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=3.9e-05  Score=65.55  Aligned_cols=78  Identities=14%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~~  124 (240)
                      ...+||-||.|.|.+++.+++.. ..+|++||+|+.+++.+++....    + .++++++.+|+.++ +...        
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~~--------  159 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-VRKF--------  159 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-GGGC--------
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-HhcC--------
Confidence            45799999999999999999864 36899999999999999874321    1 37899999999875 2221        


Q ss_pred             ccCCCCceEEEecCCC
Q psy17126        125 WSEGLPGIRIIGNLPF  140 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY  140 (240)
                         ..++|+||..++-
T Consensus       160 ---~~~yDvIi~D~~d  172 (295)
T d1inla_         160 ---KNEFDVIIIDSTD  172 (295)
T ss_dssp             ---SSCEEEEEEEC--
T ss_pred             ---CCCCCEEEEcCCC
Confidence               2468999988753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00011  Score=62.06  Aligned_cols=99  Identities=12%  Similarity=0.042  Sum_probs=71.2

Q ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126         33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS  110 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~  110 (240)
                      |.++..-....+..+...++++|||+++|+|.=|..++... .++|+|+|+++.-+..+++++++.+ .++.++..|...
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            33444444555667788999999999999999999999864 3689999999999999999887776 445555444432


Q ss_pred             ccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126        111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is  143 (240)
                      ....            ....+|.|+...|=.-+
T Consensus       164 ~~~~------------~~~~fd~IL~DaPCSg~  184 (284)
T d1sqga2         164 SQWC------------GEQQFDRILLDAPCSAT  184 (284)
T ss_dssp             HHHH------------TTCCEEEEEEECCCCCG
T ss_pred             chhc------------ccccccEEEEecccccc
Confidence            2111            11468999988885433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.62  E-value=3.1e-05  Score=64.69  Aligned_cols=88  Identities=11%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             HHHHHcCCCCC--CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC----------CCCeEEEEcccc
Q psy17126         42 KIVRNAGTITG--NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS----------PCPVHFHLGDVM  109 (240)
Q Consensus        42 ~iv~~~~~~~~--~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~----------~~~v~vi~~D~~  109 (240)
                      .++++++++.+  .+|||.-||.|.-+..++..+ ++|+++|.++.+...++..+...          ..|++++++|..
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~  155 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence            46677776554  489999999999999999986 69999999999888777644321          137999999987


Q ss_pred             cccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126        110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I  142 (240)
                      ++- ....           ..+|+|.--|+|..
T Consensus       156 ~~L-~~~~-----------~~~DvIYlDPMFp~  176 (250)
T d2oyra1         156 TAL-TDIT-----------PRPQVVYLDPMFPH  176 (250)
T ss_dssp             HHS-TTCS-----------SCCSEEEECCCCCC
T ss_pred             HHH-hccC-----------CCCCEEEECCCCcc
Confidence            742 2211           35799999999954

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.57  E-value=0.00012  Score=61.80  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=61.4

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh----cC-CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ----AS-PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~----~~-~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ....+||-||-|.|..++.+++.. ..+|+.||+|+.+++.+++...    .. .++++++.+|+..+ +...       
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-l~~~-------  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAKS-------  145 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHTC-------
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-Hhhc-------
Confidence            345799999999999999999863 4799999999999999988542    12 37899999999774 1111       


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                          ..++|+||..+|
T Consensus       146 ----~~~yDvIi~D~~  157 (274)
T d1iy9a_         146 ----ENQYDVIMVDST  157 (274)
T ss_dssp             ----CSCEEEEEESCS
T ss_pred             ----CCCCCEEEEcCC
Confidence                146899998875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.53  E-value=6.4e-05  Score=64.70  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=61.9

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ....+||-||-|.|.+++.+++..+ .+|++||+|+.+++.+++....    + .++++++.+|+.++ +..        
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~-l~~--------  175 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKN--------  175 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHH--------
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH-HHh--------
Confidence            3457999999999999999998643 6999999999999999985432    1 37899999999875 221        


Q ss_pred             cccCCCCceEEEecCCC
Q psy17126        124 DWSEGLPGIRIIGNLPF  140 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlPY  140 (240)
                         ...++|+||..++-
T Consensus       176 ---~~~~yDvII~D~~d  189 (312)
T d2b2ca1         176 ---HKNEFDVIITDSSD  189 (312)
T ss_dssp             ---CTTCEEEEEECCC-
T ss_pred             ---CCCCCCEEEEcCCC
Confidence               12468999998763

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00013  Score=61.78  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ...++||=||-|.|..+..+++.. ..+|++||+|+.+++.+++....    . .++++++.+|+.++ +..        
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~-l~~--------  147 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MKQ--------  147 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HHT--------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH-Hhc--------
Confidence            455899999999999999999863 47999999999999999875421    1 37999999999764 211        


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                         ...++|+||..++
T Consensus       148 ---~~~~yDvIi~D~~  160 (285)
T d2o07a1         148 ---NQDAFDVIITDSS  160 (285)
T ss_dssp             ---CSSCEEEEEEECC
T ss_pred             ---CCCCCCEEEEcCC
Confidence               1246899999875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.37  E-value=0.0011  Score=54.35  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             HHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126         40 TDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF  117 (240)
Q Consensus        40 ~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~  117 (240)
                      ...+++.... ....+|||||||+|.++..++++.+ .+++.+|+-.. ++.+     ...++++++.+|+.+ +++.  
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-----~~~~r~~~~~~d~~~-~~P~--  139 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-----PSYPGVEHVGGDMFV-SIPK--  139 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-----CCCTTEEEEECCTTT-CCCC--
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-----ccCCceEEecccccc-cCCC--
Confidence            3445555554 3357899999999999999999864 69999998543 2221     123789999999865 2221  


Q ss_pred             hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                                  ..+.++++.-..-+.+...++|.+..
T Consensus       140 ------------ad~~~l~~vlh~~~d~~~~~iL~~~~  165 (243)
T d1kyza2         140 ------------ADAVFMKWICHDWSDEHCLKFLKNCY  165 (243)
T ss_dssp             ------------CSCEECSSSSTTSCHHHHHHHHHHHH
T ss_pred             ------------cceEEEEEEeecCCHHHHHHHHHHHH
Confidence                        23456777777777666666666544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.36  E-value=0.00024  Score=60.35  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHh----c-CCCCeEEEEcccccccccccchhhhcc
Q psy17126         50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQ----A-SPCPVHFHLGDVMSFTMQNMFSEDRRR  123 (240)
Q Consensus        50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~----~-~~~~v~vi~~D~~~~~~~~~~~~~~~~  123 (240)
                      ....+||=||-|.|.+.+.+++..+ .+|++||+|+.+++.+++...    . ..++++++.+|+.++= ...       
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l-~~~-------  150 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL-KNA-------  150 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH-HTS-------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH-hhc-------
Confidence            3457999999999999999998743 689999999999999988432    1 1488999999987642 111       


Q ss_pred             cccCCCCceEEEecCC
Q psy17126        124 DWSEGLPGIRIIGNLP  139 (240)
Q Consensus       124 ~~~~~~~~~~VvsNlP  139 (240)
                         ..+++|+||..++
T Consensus       151 ---~~~~yDvIi~D~~  163 (290)
T d1xj5a_         151 ---AEGSYDAVIVDSS  163 (290)
T ss_dssp             ---CTTCEEEEEECCC
T ss_pred             ---cccCccEEEEcCC
Confidence               0136899998875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.29  E-value=0.0003  Score=58.10  Aligned_cols=84  Identities=12%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ...+|||||||+|.++..++++.+ .+++..|+. ..++.+     ...++++++.+|+.+- .+              +
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-----~~~~rv~~~~gD~f~~-~p--------------~  138 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-----SGSNNLTYVGGDMFTS-IP--------------N  138 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-----CCBTTEEEEECCTTTC-CC--------------C
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-----cccCceEEEecCcccC-CC--------------C
Confidence            447899999999999999999864 699999983 333221     1237899999999762 21              1


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAIS  155 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~  155 (240)
                      ...++++|.=...+.+...++|++..
T Consensus       139 aD~~~l~~vLHdw~d~~~~~iL~~~~  164 (244)
T d1fp2a2         139 ADAVLLKYILHNWTDKDCLRILKKCK  164 (244)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             CcEEEEEeecccCChHHHHHHHHHHH
Confidence            23556777767777776666666543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0006  Score=53.70  Aligned_cols=89  Identities=17%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             HHHHcC-CCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126         43 IVRNAG-TITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE  119 (240)
Q Consensus        43 iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~  119 (240)
                      |.+... ++++.+|||+||++|..+..++++.  ...|+|+|+.+-         . .-.++.++++|+.+.........
T Consensus        13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-~i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-PIVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-CCTTEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-ccCCceEeecccccchhhhhhhh
Confidence            334434 3678999999999999999988752  378999998762         1 12678999999976442221111


Q ss_pred             hhcccccCCCCceEEEecCCCCCCHHH
Q psy17126        120 DRRRDWSEGLPGIRIIGNLPFNVSTPL  146 (240)
Q Consensus       120 ~~~~~~~~~~~~~~VvsNlPY~Iss~i  146 (240)
                          .+ ...++|+|+|..-.++|.--
T Consensus        83 ----~~-~~~~~DlVlSD~ap~~sg~~  104 (180)
T d1ej0a_          83 ----RV-GDSKVQVVMSDMAPNMSGTP  104 (180)
T ss_dssp             ----HH-TTCCEEEEEECCCCCCCSCH
T ss_pred             ----hc-cCcceeEEEecccchhcccc
Confidence                11 12478999999988876533

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=0.00018  Score=59.51  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG  128 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~  128 (240)
                      .+.+|+|||+|.|.=+..|+-.. ..+|+.+|.+..-+..++.....++ .|++++++.++.+......          .
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~----------~  139 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDV----------R  139 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTT----------T
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccc----------c
Confidence            56799999999999999988643 4799999999988888887666555 7899999999876432211          1


Q ss_pred             CCceEEEec
Q psy17126        129 LPGIRIIGN  137 (240)
Q Consensus       129 ~~~~~VvsN  137 (240)
                      .++|.|+|-
T Consensus       140 ~~~D~v~sR  148 (239)
T d1xdza_         140 ESYDIVTAR  148 (239)
T ss_dssp             TCEEEEEEE
T ss_pred             ccceEEEEh
Confidence            367888875

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.99  E-value=0.00041  Score=56.97  Aligned_cols=68  Identities=13%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh----C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126         39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR----R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM  113 (240)
Q Consensus        39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~----~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~  113 (240)
                      +.+.++....   .++|||||++.|.-+..++..    + .++|+++|+++.......    ....+++++++|..+...
T Consensus        71 ~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----~~~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          71 VYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCSSCSGG
T ss_pred             HHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----ccccceeeeecccccHHH
Confidence            5566666654   468999999999877666532    1 379999999986543322    113789999999876543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.002  Score=56.40  Aligned_cols=93  Identities=8%  Similarity=-0.059  Sum_probs=68.9

Q ss_pred             CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCC----------------CCeEEEEcccccccc
Q psy17126         51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASP----------------CPVHFHLGDVMSFTM  113 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~----------------~~v~vi~~D~~~~~~  113 (240)
                      .+.+|||..||||..+...+.. +..+|+++|+|+..++.+++|++..+                .++.+.+.|+..+-.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            4679999999999999976654 45699999999999999999875321                235556666643211


Q ss_pred             cccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126        114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE  156 (240)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~  156 (240)
                      .            .+..||+|.-. ||.-.+|.|-..+.....
T Consensus       125 ~------------~~~~fDvIDiD-PfGs~~pfldsAi~a~~~  154 (375)
T d2dula1         125 E------------RHRYFHFIDLD-PFGSPMEFLDTALRSAKR  154 (375)
T ss_dssp             H------------STTCEEEEEEC-CSSCCHHHHHHHHHHEEE
T ss_pred             h------------hcCcCCcccCC-CCCCcHHHHHHHHHHhcc
Confidence            1            12457888888 699999999888887653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.78  E-value=0.0018  Score=53.73  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126         54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR  133 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (240)
                      +|+|+=||.|.++..+-..+...+.++|+|+..++..+.|.   +  -.++++|+.+++..++            ...|+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~---~--~~~~~~Di~~~~~~~~------------~~~dl   64 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH---S--AKLIKGDISKISSDEF------------PKCDG   64 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC---C--SEEEESCTTTSCGGGS------------CCCSE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC---C--CCCccCChhhCCHhHc------------ccccE
Confidence            69999999999999988876556679999999988887653   2  3568899999876543            24688


Q ss_pred             EEecCC
Q psy17126        134 IIGNLP  139 (240)
Q Consensus       134 VvsNlP  139 (240)
                      +++.+|
T Consensus        65 l~~g~P   70 (324)
T d1dcta_          65 IIGGPP   70 (324)
T ss_dssp             EEECCC
T ss_pred             Eeeccc
Confidence            999888

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.71  E-value=0.0021  Score=51.62  Aligned_cols=59  Identities=10%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      .+..+++++++... .+|+.|||.=||+|+.+.+..+.+ .+.+|+|+++.-++.++++++
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            35678999998876 578999999999999998888774 899999999999999998764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.70  E-value=0.0035  Score=54.23  Aligned_cols=83  Identities=19%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             hhccCc--cccCCHHH--------HHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--------CCeEEEEeCCc
Q psy17126         26 LKQLSQ--NFLFEPRL--------TDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--------PARLVLIEKDP   84 (240)
Q Consensus        26 ~k~~gQ--~fl~d~~i--------~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--------~~~V~avEid~   84 (240)
                      +..+|.  .|+|.|.+        +..++.   .++..+.-+|+|+|||+|.|+.-++...        ..+++-||.++
T Consensus        41 ~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~  120 (365)
T d1zkda1          41 RDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  120 (365)
T ss_dssp             C--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             CCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch
Confidence            344566  69999985        222222   2333344689999999999998776531        13689999999


Q ss_pred             chHHHHHHHHhcCCCCeEEEEccccc
Q psy17126         85 RFTPCLDMLAQASPCPVHFHLGDVMS  110 (240)
Q Consensus        85 ~m~~~l~~~~~~~~~~v~vi~~D~~~  110 (240)
                      .+.+.-+++.... .+++.+ .|+..
T Consensus       121 ~L~~~Q~~~l~~~-~~i~w~-~~~~~  144 (365)
T d1zkda1         121 VLRQKQQTLLAGI-RNIHWH-DSFED  144 (365)
T ss_dssp             HHHHHHHHHSTTC-SSEEEE-SSGGG
T ss_pred             hHHHHHHHHhccc-ccceec-cChhh
Confidence            9877666554322 345443 33433

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0018  Score=54.37  Aligned_cols=78  Identities=13%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             CEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      .+|+|+-||.|.++..|-..+-  .-|.|+|+++..++..+.+.    ++..++.+|+.+++..++- .         ..
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~----~~~~~~~~di~~~~~~~~~-~---------~~   68 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF----PHTQLLAKTIEGITLEEFD-R---------LS   68 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC----TTSCEECSCGGGCCHHHHH-H---------HC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC----CCCCcccCchhhCCHhHcC-C---------CC
Confidence            4799999999999988876652  23779999999998887653    3466788999888765431 1         24


Q ss_pred             ceEEEecCC---CCCCH
Q psy17126        131 GIRIIGNLP---FNVST  144 (240)
Q Consensus       131 ~~~VvsNlP---Y~Iss  144 (240)
                      .|++++.+|   |+++.
T Consensus        69 ~Dll~ggpPCq~fS~ag   85 (343)
T d1g55a_          69 FDMILMSPPCQPFTRIG   85 (343)
T ss_dssp             CSEEEECCC--------
T ss_pred             ccEEEeecccccccccc
Confidence            699999999   65543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.62  E-value=0.0027  Score=53.17  Aligned_cols=71  Identities=14%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      .+.+|+|+=||.|.++..|-..+...|.|+|+|+..++..+.|..   .   ..++|+.+++..++            ..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~---~---~~~~Di~~~~~~~~------------~~   71 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG---E---KPEGDITQVNEKTI------------PD   71 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS---C---CCBSCGGGSCGGGS------------CC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC---C---CCcCchhcCchhhc------------ce
Confidence            568999999999999999987764567889999999999887653   2   23689888775543            24


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      .|++++.+|
T Consensus        72 ~Dll~ggpP   80 (327)
T d2c7pa1          72 HDILCAGFP   80 (327)
T ss_dssp             CSEEEEECC
T ss_pred             eeeeecccc
Confidence            689999988

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.56  E-value=0.0018  Score=53.59  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126         34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ   95 (240)
Q Consensus        34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~   95 (240)
                      ..+..+++++++... .+|+.|||.=||+|+.+.+..+.+ .+.+|+|++++.++.+++++.
T Consensus       234 ~kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         234 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGS
T ss_pred             cCchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHH
Confidence            345678999998875 488999999999999998888874 899999999999999987654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.38  E-value=0.0044  Score=50.35  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126         35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS   97 (240)
Q Consensus        35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~   97 (240)
                      .+..++.++++... .+|+.|||.=||+|+.+.+..+.+ .+.+|+|+|+...+.+++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            45678999999875 589999999999999998888875 89999999999999999877643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.30  E-value=0.0018  Score=51.16  Aligned_cols=60  Identities=10%  Similarity=0.048  Sum_probs=39.5

Q ss_pred             ccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHH----HHHHHhhC-----CCeEEEEeCCcchHHHHHH
Q psy17126         33 FLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSI----TRSILNRR-----PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        33 fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~l----t~~La~~~-----~~~V~avEid~~m~~~l~~   92 (240)
                      |.-|+...+.+.+.+. -.+.-+|+++|||||--    ++.+.+..     ..+|+|.|+|+.+++.+++
T Consensus         5 FFRd~~~f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2           5 FFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             TTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            4455554444444432 23446899999999984    44444321     1369999999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.014  Score=44.41  Aligned_cols=50  Identities=24%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+...+++++++|+-+|+| .|.++..+++....+|+++|.++.-++.+++
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            3456788999999999999 6777788887544699999999998888875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.73  E-value=0.012  Score=46.29  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      -++.+++++|++||-+|||+ |.++..+++. ++.+|+++|.++.-++.+++
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            35678899999999999999 6566777764 45699999999998888875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.38  E-value=0.022  Score=42.94  Aligned_cols=50  Identities=24%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             HHHHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .++..+++++++|+=+||| .|.++..+++....+|+++|.++.-++.+++
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            4566788999999999999 5777778887655799999999998888875

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.01  E-value=0.012  Score=48.51  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=34.8

Q ss_pred             HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCC
Q psy17126         40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKD   83 (240)
Q Consensus        40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid   83 (240)
                      +..|.+..-+.++.+|+|+|||+|..|..++.+.. ..|.|+++-
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            45566666677888999999999999999997632 578888874

>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Topoisomerase VI-B subunit middle domain
domain: Topoisomerase VI-B subunit middle domain
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

Probab=94.88  E-value=0.031  Score=37.40  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHhccccccccchh-------h-hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126        139 PFNVSTPLIIKWIQAISENLLFPKHK-------R-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD  200 (240)
Q Consensus       139 PY~Iss~il~~ll~~~~~~~~~~~~~-------~-~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~  200 (240)
                      |+.++-..+.+++.......-...+.       . ..+++++..+||+|..++.+||.+|+.+|++++++
T Consensus         5 P~~v~~~~l~~~l~~~~~~ik~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e~~~L~~air~   74 (78)
T d2hkja1           5 PYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK   74 (78)
T ss_dssp             GGGCCHHHHHHHHHTCSSCCBHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCcchHHHHHHHHhcccCHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHHhh
Confidence            56677778888887654321111111       1 46889999999999999999999999999998865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.018  Score=41.89  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=62.0

Q ss_pred             EEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126         54 EVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        54 ~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~  130 (240)
                      +|+=+|+  |.++..+++.   ....|+.||.|++.++.+.+.     .++.+++||+.+.+.-....         -..
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----~~~~vi~Gd~~~~~~l~~~~---------i~~   65 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----IDALVINGDCTKIKTLEDAG---------IED   65 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----CSSEEEESCTTSHHHHHHTT---------TTT
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----hhhhhccCcccchhhhhhcC---------hhh
Confidence            4555555  6666666543   236899999999988877642     24789999998755321110         023


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhccccccc--cchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126        131 GIRIIGNLPFNVSTPLIIKWIQAISENLLF--PKHKR-QLVVSLLERACVKPILRPY  184 (240)
Q Consensus       131 ~~~VvsNlPY~Iss~il~~ll~~~~~~~~~--~~~~~-~~~~~~l~~~gi~~~~R~e  184 (240)
                      .+.+++-.+-. ...++..++.+.  +-..  +..+. ....+.+..+|++.-..|+
T Consensus        66 a~~vv~~t~~d-~~N~~~~~~~k~--~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          66 ADMYIAVTGKE-EVNLMSSLLAKS--YGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             CSEEEECCSCH-HHHHHHHHHHHH--TTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhhcccCCcH-HHHHHHHHHHHH--cCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            56666644332 222322222221  1111  11112 4455678999987655553

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.45  E-value=0.037  Score=42.26  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             HHcCCCCCCEEEEECCch-hHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126         45 RNAGTITGNEVCEVGPGP-GSITRSILNRRP-ARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~-~~V~avEid~~m~~~l~~   92 (240)
                      +...+++|++||=+|+|+ |.++..+++... .+|+++|.++.-++.+++
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            334678899999999995 888888888643 589999999998888875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.20  E-value=0.051  Score=41.52  Aligned_cols=51  Identities=18%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             HHHHHcCCCCCCEEEEECCch-hHHHHHHHhhC-CCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGP-GSITRSILNRR-PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~-~~~V~avEid~~m~~~l~~   92 (240)
                      ..++.++++++++|+=+|||. |.++..+++.. +.+|+++|.++.-++.+++
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            446778899999999999998 88888888864 3589999999988877765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.05  E-value=0.066  Score=40.94  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCCEEEEECCch-hHHHHHHHhhC-CCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGP-GSITRSILNRR-PARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~-~~~V~avEid~~m~~~l~~   92 (240)
                      .+++..+++++++|+=+|||+ |.++..+++.. +..|+++|.++.-++.+++
T Consensus        19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            345567889999999999999 77888888864 4589999999988877775

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.91  E-value=0.19  Score=37.32  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=39.7

Q ss_pred             HHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .++.++++++++|+=+|+|+ |.++..+++....+|+++|.++.-++.+++
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            45667889999999999986 555567777655799999999988887765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.81  E-value=0.15  Score=38.83  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=40.4

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHH-HHHHhh-CCCeEEEEeCCcchHHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSIT-RSILNR-RPARLVLIEKDPRFTPCLDML   93 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt-~~La~~-~~~~V~avEid~~m~~~l~~~   93 (240)
                      +++..+++++++|+=+|||...+. ..+++. ++.+|+++|.+++-++.+++.
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            456677899999999999976665 455554 347999999999999988863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.71  E-value=0.043  Score=39.57  Aligned_cols=113  Identities=10%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             EEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126         55 VCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG  131 (240)
Q Consensus        55 VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~  131 (240)
                      ++=+|+  |.++..+++.   ....|+++|.|++.++.++.      ....++.+|+.+.+.-.-.      +.   ...
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~------~~~~~~~gd~~~~~~l~~a------~i---~~a   65 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS------YATHAVIANATEENELLSL------GI---RNF   65 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT------TCSEEEECCTTCTTHHHHH------TG---GGC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH------hCCcceeeecccchhhhcc------CC---ccc
Confidence            344555  5555555443   24799999999999877652      2356788999775431110      01   134


Q ss_pred             eEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126        132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPY  184 (240)
Q Consensus       132 ~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e  184 (240)
                      +.||.-+|=....-++.....+......-+-... ....+.|..+|++--..|+
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~  119 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE  119 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence            6677766643333333333332211110011112 4455678899987655554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.39  E-value=0.17  Score=38.30  Aligned_cols=51  Identities=14%  Similarity=0.070  Sum_probs=40.2

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHH-HHHHh-hCCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSIT-RSILN-RRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt-~~La~-~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+++..+++++++|+=+|||...+. ..+++ .++.+|+++|.++.-++.+++
T Consensus        18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            3456678899999999999987665 44454 345799999999999988875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.33  Score=36.12  Aligned_cols=51  Identities=18%  Similarity=0.160  Sum_probs=40.7

Q ss_pred             HHHHHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ..++..++++|++|+=+|+|+ |.++..+++....++++++.++.-.+.+++
T Consensus        21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            344677899999999999975 777788888655688999999887777764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.22  E-value=0.28  Score=39.47  Aligned_cols=84  Identities=12%  Similarity=0.062  Sum_probs=57.8

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|.+.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+.+|+.+.+ ..+++... ...| 
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV-VRDF-   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence            57888888987663   566777775 69999999998888777766655678999999998643 22222221 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        81 --g~iDilVnnaG   91 (260)
T d1zema1          81 --GKIDFLFNNAG   91 (260)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCeehhhhc
Confidence              45788887754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.84  E-value=0.22  Score=37.18  Aligned_cols=51  Identities=14%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHHHH-HHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSITRS-ILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~-La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      .+.+..+++++++|+=+|+|.+.+... +++. ++..|+++|.+++-++.+++
T Consensus        19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            344567889999999999999666543 3433 45789999999998888775

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.35  Score=36.01  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=39.4

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHHH-HHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSIT-RSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~lt-~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      ..++..+++++++|+=+|+|+..+. ..+++. ++.+|+++|.++.-++.+++
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            3456678899999999999875554 555554 34589999999998888775

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.29  E-value=0.24  Score=39.69  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=55.8

Q ss_pred             CCCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      +++.+|=-|.+.| ++.    .|++.+ .+|+.++.+++-++.+.+.+...+.++..+.+|+.+.+ ...++... ...|
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~-~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI-LTEH   85 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH-HHHC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHhc
Confidence            4677888887665 444    444444 69999999998887777666655678999999998743 22222221 1122


Q ss_pred             cCCCCceEEEecCCC
Q psy17126        126 SEGLPGIRIIGNLPF  140 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY  140 (240)
                         ++.|.+|.|-..
T Consensus        86 ---g~iDilvnnag~   97 (251)
T d2c07a1          86 ---KNVDILVNNAGI   97 (251)
T ss_dssp             ---SCCCEEEECCCC
T ss_pred             ---CCceeeeecccc
Confidence               467888888754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.38  Score=38.40  Aligned_cols=86  Identities=15%  Similarity=0.067  Sum_probs=59.7

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~  126 (240)
                      .|+.+|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+.+|+.+.+- ..++... ...| 
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i-~~~~-   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV-KAEI-   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH-HHHc-
Confidence            57788888988774   566777775 799999999988877766666666789999999988642 2222211 0112 


Q ss_pred             CCCCceEEEecCCCC
Q psy17126        127 EGLPGIRIIGNLPFN  141 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~  141 (240)
                        +..|.+|.|--..
T Consensus        83 --g~idilinnag~~   95 (244)
T d1yb1a_          83 --GDVSILVNNAGVV   95 (244)
T ss_dssp             --CCCSEEEECCCCC
T ss_pred             --CCCceeEeecccc
Confidence              4578888886544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.15  Score=37.46  Aligned_cols=115  Identities=10%  Similarity=-0.014  Sum_probs=58.8

Q ss_pred             CEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126         53 NEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL  129 (240)
Q Consensus        53 ~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~  129 (240)
                      ++|+=+|+|  .++..+++.   ....|+.||.|++......+...  ..++.++.||..+.+.   +...   +.   .
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~---L~~a---~i---~   70 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSV---LKKA---GI---D   70 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHH---HHHH---TT---T
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHH---HHHh---cc---c
Confidence            356666664  555544442   24689999999876443322221  2568999999987542   1110   01   2


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhccccccccchh----hhhHHHHHHHcCCCCCCCC
Q psy17126        130 PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHK----RQLVVSLLERACVKPILRP  183 (240)
Q Consensus       130 ~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~R~  183 (240)
                      ..+.||.-.+-.-.+-.+...+..   ....+..+    .......+.++|++.-..|
T Consensus        71 ~a~~vi~~~~~d~~n~~~~~~~r~---~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p  125 (153)
T d1id1a_          71 RCRAILALSDNDADNAFVVLSAKD---MSSDVKTVLAVSDSKNLNKIKMVHPDIILSP  125 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHH---HTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred             cCCEEEEccccHHHHHHHHHHHHH---hCCCCceEEEEcCHHHHHHHHHCCCCEEECH
Confidence            356677655532222222222222   11221111    2344456788887655444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.27  Score=36.81  Aligned_cols=50  Identities=14%  Similarity=0.101  Sum_probs=39.7

Q ss_pred             HHHHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      +.+..+++++++||=.|+  |.|.++..+++....+|+++..+++-.+.+++
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            345567889999999996  67888889998755799999988876666654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.13  E-value=0.47  Score=38.06  Aligned_cols=86  Identities=13%  Similarity=0.068  Sum_probs=57.4

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +|++||=.|+..|   .++..|++.+ .+|+.++.++.-++.+.+.....+.++.++.+|+.+.+ ...++... ...| 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-~~~~-   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTV-AHVF-   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHH-HHHh-
Confidence            5789999999876   4566777775 69999999987777666655555678889999998754 12222211 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                       ++..|++|.|-..
T Consensus        82 -~g~idilinnag~   94 (258)
T d1ae1a_          82 -DGKLNILVNNAGV   94 (258)
T ss_dssp             -TSCCCEEEECCCC
T ss_pred             -CCCcEEEeccccc
Confidence             1356788876553

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.05  E-value=0.21  Score=43.22  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             CCCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhc
Q psy17126         49 TITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQA   96 (240)
Q Consensus        49 ~~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~   96 (240)
                      +.+++.++|||+=.|..+..++...   ..+|+|+|.++...+.++++...
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            5678899999999999988776542   25899999999999999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.83  E-value=0.44  Score=35.56  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=38.7

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHH-HHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSIT-RSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt-~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      +.+..++++|++||=+|+|.+.++ ..+++. ++.+|+++|.++.-.+.+++
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence            456678899999999999766654 444444 35799999999999888875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.04  E-value=0.75  Score=33.89  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=39.8

Q ss_pred             HHHHHcCCCCCCEEEEECC--chhHHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGP--GPGSITRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~--GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      ..+...+++++++|+=+|+  |.|.++..+++. +..+|++++.++.-.+.+++
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            3456678899999999997  366667766664 44799999999988777775

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.48  Score=37.92  Aligned_cols=87  Identities=14%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      +++.||=.|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+  .++..+++|+.+-+ ...++... ...
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~-~~~   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI-RSQ   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH-HHh
Confidence            47889999988763   345555665 699999999887777655444332  57888999998743 22222211 111


Q ss_pred             ccCCCCceEEEecCCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~I  142 (240)
                      |   +..|.+|.|-....
T Consensus        87 ~---g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          87 H---SGVDICINNAGLAR  101 (257)
T ss_dssp             H---CCCSEEEECCCCCC
T ss_pred             c---CCCCEEEecccccC
Confidence            2   46788998876543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.68  Score=36.69  Aligned_cols=77  Identities=16%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|++.|   .++..|++.+ .+|+.++.++.-++.+.+   +. .++..++.|+.+.+- ...+.        
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~---~~-~~~~~~~~Dv~d~~~v~~~~~--------   72 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVR---EC-PGIEPVCVDLGDWEATERALG--------   72 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HS-TTCEEEECCTTCHHHHHHHHT--------
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHH---hc-CCCeEEEEeCCCHHHHHHHHH--------
Confidence            6889999998877   5667777775 699999999876655543   22 457888899876431 12221        


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                      .-++.|.+|.|-..
T Consensus        73 ~~g~iDilVnnAg~   86 (244)
T d1pr9a_          73 SVGPVDLLVNNAAV   86 (244)
T ss_dssp             TCCCCCEEEECCCC
T ss_pred             HhCCceEEEecccc
Confidence            12567888887643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.66  E-value=0.68  Score=37.00  Aligned_cols=84  Identities=13%  Similarity=0.019  Sum_probs=54.1

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|.+.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+++|+.+.+ ...++... ...| 
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~-~~~~-   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFA-ISKL-   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            57788877765542   234455554 79999999988877776655555678999999998743 22222211 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        +..|.+|.|--
T Consensus        87 --g~iDilvnnAG   97 (255)
T d1fmca_          87 --GKVDILVNNAG   97 (255)
T ss_dssp             --SSCCEEEECCC
T ss_pred             --CCCCEeeeCCc
Confidence              45788888753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.64  E-value=0.57  Score=37.72  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=54.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .++++|=.|++.|   .++..|++.+ .+|+.++.+++-++.+.+.+...+   .++..+.+|+.+.+ ...++... ..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~-~~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST-LK   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH-HH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH-HH
Confidence            5778888887766   4556666765 699999999988777766554332   46889999998754 22222221 11


Q ss_pred             cccCCCCceEEEecC
Q psy17126        124 DWSEGLPGIRIIGNL  138 (240)
Q Consensus       124 ~~~~~~~~~~VvsNl  138 (240)
                      .|   +..|.+|.|-
T Consensus        82 ~~---g~iDilvnnA   93 (272)
T d1xkqa_          82 QF---GKIDVLVNNA   93 (272)
T ss_dssp             HH---SCCCEEEECC
T ss_pred             Hh---CCceEEEeCC
Confidence            12   4578888873

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.42  E-value=0.35  Score=34.39  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             CchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126         60 PGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT  112 (240)
Q Consensus        60 ~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~  112 (240)
                      ||.|.++..+++.. ...|+.||.++...+.++.      .++.++.||+.+.+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~   53 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR------SGANFVHGDPTRVS   53 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH------TTCEEEESCTTSHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh------cCccccccccCCHH
Confidence            56788888888864 3579999999998877653      35889999997643

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.35  E-value=1  Score=35.74  Aligned_cols=82  Identities=12%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             CCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126         52 GNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE  127 (240)
Q Consensus        52 ~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~  127 (240)
                      |+.+|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+.+|+.+.+ ...++... ...|  
T Consensus         2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~-~~~~--   77 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV-VERY--   77 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHT--
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH-HHHh--
Confidence            3445666765443   345555664 69999999988887776655555678999999998754 22222221 1122  


Q ss_pred             CCCceEEEecC
Q psy17126        128 GLPGIRIIGNL  138 (240)
Q Consensus       128 ~~~~~~VvsNl  138 (240)
                       ++.|.+|.|-
T Consensus        78 -g~iDilVnnA   87 (257)
T d2rhca1          78 -GPVDVLVNNA   87 (257)
T ss_dssp             -CSCSEEEECC
T ss_pred             -CCCCEEEecc
Confidence             4678888774

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.83  E-value=0.82  Score=36.63  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDP-RFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .|+++|=-|++.|   .++..|++.+ .+|+.++.+. ..++.+.+.++..+.++..+.+|+.+.+ ...++... ...|
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~-~~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSA-IKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHh
Confidence            5778888888776   3456666665 6999999875 4555555555555677889999998743 22222221 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         ++.|.+|.|--
T Consensus        84 ---G~iDiLVnnAG   94 (261)
T d1geea_          84 ---GKLDVMINNAG   94 (261)
T ss_dssp             ---SCCCEEEECCC
T ss_pred             ---CCCCEeeccce
Confidence               46788888864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.78  E-value=0.87  Score=33.92  Aligned_cols=51  Identities=12%  Similarity=0.083  Sum_probs=40.1

Q ss_pred             HHHHHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      ..++..+++++++||=.|.  |.|.++..+++....+|++++.+++-.+.+++
T Consensus        18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            3456678899999999884  44778888888755799999998887777764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.59  E-value=0.67  Score=36.87  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCchh---HHHHHHHhhCCCeEEEE-eCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126         50 ITGNEVCEVGPGPG---SITRSILNRRPARLVLI-EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        50 ~~~~~VLEIG~GtG---~lt~~La~~~~~~V~av-Eid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      -.|++||=-|.+.|   .++..|++.+ .+|+.. ..+...++.+.+.....+.++..+++|+.+.+ ..+++... ...
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~-~~~   81 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKA-VSH   81 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHH-HHH
Confidence            35889998887666   5666777765 577764 56777777777766666778999999997643 22222211 111


Q ss_pred             ccCCCCceEEEecCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFN  141 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~  141 (240)
                      |   +..|.+|.|--..
T Consensus        82 ~---g~idilinnag~~   95 (259)
T d1ja9a_          82 F---GGLDFVMSNSGME   95 (259)
T ss_dssp             H---SCEEEEECCCCCC
T ss_pred             c---CCCcEEEeccccc
Confidence            2   4578888887544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.47  E-value=0.92  Score=36.26  Aligned_cols=87  Identities=11%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCC-cchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKD-PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid-~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .|+++|=-|++.|   .++..|++.+ .+|+..+.+ .+.++.+.+.....+.++.++++|+.+.+ ...++... ...|
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~-~~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA-VKIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH-HHHh
Confidence            4788999998877   3667777775 699999987 45555555545555678999999998743 22222211 1112


Q ss_pred             cCCCCceEEEecCCCCC
Q psy17126        126 SEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~I  142 (240)
                         +..|.+|.|.....
T Consensus        95 ---g~idilV~nag~~~  108 (272)
T d1g0oa_          95 ---GKLDIVCSNSGVVS  108 (272)
T ss_dssp             ---SCCCEEEECCCCCC
T ss_pred             ---CCCCccccccccch
Confidence               45788888876543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.56  Score=34.85  Aligned_cols=49  Identities=8%  Similarity=-0.082  Sum_probs=39.3

Q ss_pred             HHHcCCCCCCEEEEECCc--hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         44 VRNAGTITGNEVCEVGPG--PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        44 v~~~~~~~~~~VLEIG~G--tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+...++++++||=.|+|  .|.+...+++....+|++++.+++-.+.+++
T Consensus        21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            344567899999998655  6778888888755799999999998888775

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.41  E-value=0.82  Score=36.54  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|.+.|   .++..|++.+ .+|+.++.+++-++.+.   ++.+.++.++++|+.+.+ ...++... ...| 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   77 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATA---RELGDAARYQHLDVTIEEDWQRVVAYA-REEF-   77 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH---HTTGGGEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH---HHhCCceEEEEcccCCHHHHHHHHHHH-HHHc-
Confidence            5788999998877   4566777775 69999999986555443   344567899999998643 22222221 1112 


Q ss_pred             CCCCceEEEecCCCC
Q psy17126        127 EGLPGIRIIGNLPFN  141 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~  141 (240)
                        ++.|.+|.|--..
T Consensus        78 --g~iDilVnnAg~~   90 (254)
T d1hdca_          78 --GSVDGLVNNAGIS   90 (254)
T ss_dssp             --SCCCEEEECCCCC
T ss_pred             --CCccEEEecCccc
Confidence              4578888886443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.40  E-value=0.67  Score=36.90  Aligned_cols=87  Identities=14%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|.+.|   .++..|++.+ .+|+.++.+++.++.+.+... .++++.++.+|+.+.+ ...++... ...| 
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   80 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDAT-EKAF-   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence            5778888887665   2345666665 699999999888777666543 2468999999998754 22222221 1122 


Q ss_pred             CCCCceEEEecCCCCCC
Q psy17126        127 EGLPGIRIIGNLPFNVS  143 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Is  143 (240)
                        ++.|.+|.|--+...
T Consensus        81 --G~iDiLVnnAg~~~~   95 (251)
T d1zk4a1          81 --GPVSTLVNNAGIAVN   95 (251)
T ss_dssp             --SSCCEEEECCCCCCC
T ss_pred             --CCceEEEeccccccc
Confidence              467888888755433

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.37  E-value=1.5  Score=34.63  Aligned_cols=83  Identities=11%  Similarity=-0.009  Sum_probs=51.8

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++.+|=-|.+.|   .++..|++.+ .+|+.++.++.-  .+....+..+.++..+.+|+.+.+ ...++... ...| 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~-~~~~-   78 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV-ISTF-   78 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHH-HHHc-
Confidence            4678888887666   3456666665 699999988752  233333445678999999998653 22222211 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.+|.|--.
T Consensus        79 --G~iDilVnnAG~   90 (247)
T d2ew8a1          79 --GRCDILVNNAGI   90 (247)
T ss_dssp             --SCCCEEEECCCC
T ss_pred             --CCCCEEEECCCC
Confidence              467888888644

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.35  E-value=1.2  Score=35.27  Aligned_cols=80  Identities=11%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             EEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCCCC
Q psy17126         55 VCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEGLP  130 (240)
Q Consensus        55 VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~~~  130 (240)
                      +|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++..+.+|+.+.+ ...++... ...|   ++
T Consensus         4 alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~---g~   78 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQA-RKTL---GG   78 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHHT---TC
T ss_pred             EEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH-HHHh---CC
Confidence            3555765442   234555554 69999999998887776655555678999999998754 12222211 1112   46


Q ss_pred             ceEEEecCC
Q psy17126        131 GIRIIGNLP  139 (240)
Q Consensus       131 ~~~VvsNlP  139 (240)
                      .|.+|.|-=
T Consensus        79 iDilVnnAG   87 (255)
T d1gega_          79 FDVIVNNAG   87 (255)
T ss_dssp             CCEEEECCC
T ss_pred             ccEEEeccc
Confidence            788887753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.83  Score=36.56  Aligned_cols=83  Identities=20%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             CCEEEEE-CCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126         52 GNEVCEV-GPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS  126 (240)
Q Consensus        52 ~~~VLEI-G~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~  126 (240)
                      |.+|.=| |++.|.   ++..|++.+..+|+..+.+.+-++.+.+.+...+.++.++.+|+.+.+- ..++... ...+ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~-~~~~-   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFL-RKEY-   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHH-HHhc-
Confidence            4556333 544443   3355666544799999999888777766555556789999999987542 2222111 1112 


Q ss_pred             CCCCceEEEecC
Q psy17126        127 EGLPGIRIIGNL  138 (240)
Q Consensus       127 ~~~~~~~VvsNl  138 (240)
                        ++.|++|.|-
T Consensus        80 --g~iDiLVnNA   89 (275)
T d1wmaa1          80 --GGLDVLVNNA   89 (275)
T ss_dssp             --SSEEEEEECC
T ss_pred             --CCcEEEEEcC
Confidence              4678999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.16  E-value=1.1  Score=35.84  Aligned_cols=91  Identities=15%  Similarity=-0.016  Sum_probs=57.4

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++++|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.......++..+.+|+.+.+ ...++... ...| 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTV-SSMF-   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHH-HHHh-
Confidence            57889989987774   566677765 69999999988777666555444568999999997643 22222211 0111 


Q ss_pred             CCCCceEEEecCCCCCCHH
Q psy17126        127 EGLPGIRIIGNLPFNVSTP  145 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~Iss~  145 (240)
                       ++..|.+|.|-......+
T Consensus        84 -~g~idilvnnAG~~~~~~  101 (259)
T d1xq1a_          84 -GGKLDILINNLGAIRSKP  101 (259)
T ss_dssp             -TTCCSEEEEECCC-----
T ss_pred             -CCCcccccccccccCCCc
Confidence             135788998876544333

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.08  E-value=0.75  Score=37.05  Aligned_cols=83  Identities=10%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .|+++|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+   .++..+.+|+.+.+ ..+++... ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT-LA   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH-HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH-HH
Confidence            47788888887763   556666665 699999999887776665443332   46899999998754 22222221 11


Q ss_pred             cccCCCCceEEEecC
Q psy17126        124 DWSEGLPGIRIIGNL  138 (240)
Q Consensus       124 ~~~~~~~~~~VvsNl  138 (240)
                      .|   ++.|.+|.|-
T Consensus        81 ~~---G~iDilVnnA   92 (274)
T d1xhla_          81 KF---GKIDILVNNA   92 (274)
T ss_dssp             HH---SCCCEEEECC
T ss_pred             Hc---CCceEEEeec
Confidence            12   4678888874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.07  E-value=0.97  Score=36.07  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-c-CCCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-A-SPCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~-~-~~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .++++|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+... . .+.++..+.+|+.+.+ ...++... ...
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~-~~~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT-TER   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHH-HHH
Confidence            46788888987763   567777775 699999999987776655332 2 2357888999997743 22222211 112


Q ss_pred             ccCCCCceEEEecC
Q psy17126        125 WSEGLPGIRIIGNL  138 (240)
Q Consensus       125 ~~~~~~~~~VvsNl  138 (240)
                      |   ++.|.+|.|-
T Consensus        81 ~---G~iDiLVnnA   91 (258)
T d1iy8a_          81 F---GRIDGFFNNA   91 (258)
T ss_dssp             H---SCCSEEEECC
T ss_pred             h---CCCCEEEECC
Confidence            2   4578888774

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.80  E-value=1.2  Score=32.78  Aligned_cols=50  Identities=12%  Similarity=-0.006  Sum_probs=37.8

Q ss_pred             HHHHcCCCCCCEEEEECCchh-HHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGPG-SITRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG-~lt~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      +.+..+++++++||=.|||.. .++..+++. ++..|++++.++.-.+.+++
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            445678899999999988743 344555554 45789999999998888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.73  E-value=1.2  Score=32.45  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=38.9

Q ss_pred             HHHHcCCCCCCEEEEECCchhHHH-HHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         43 IVRNAGTITGNEVCEVGPGPGSIT-RSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        43 iv~~~~~~~~~~VLEIG~GtG~lt-~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+...+++++++||=.|+|+-.+. ..+++....+|++++.++.-++.+++
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            455678889999999999875554 56666555799999999988877765

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.54  E-value=1  Score=33.46  Aligned_cols=51  Identities=4%  Similarity=-0.003  Sum_probs=38.4

Q ss_pred             HHHHHcCCCCCCEEEEECCchhHH-HHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPGPGSI-TRSILNR-RPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~GtG~l-t~~La~~-~~~~V~avEid~~m~~~l~~   92 (240)
                      .+.+.++++++++|+=+|||.-.+ +..+++. ++..|+++|.++.-++.+++
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            345567889999999999987554 4555554 45678899999988888775

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.35  E-value=0.77  Score=36.99  Aligned_cols=87  Identities=22%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHH-HHhcCCCCeEEEEcccccccc-cccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDM-LAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~-~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~  125 (240)
                      .|+++|=-|++.|   .++..|++.+ .+|+.++.+..-++.+.+ .....+.++.++.+|+.+.+- ...+.. ....|
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~-~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSE-LIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH-HHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhh-hhhhc
Confidence            5789999998877   5566666665 799999999876655443 333335778899999987542 111111 01112


Q ss_pred             cCCCCceEEEecCCCCC
Q psy17126        126 SEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~I  142 (240)
                         +..|.+|.|.-+..
T Consensus       102 ---g~iDilvnnAg~~~  115 (294)
T d1w6ua_         102 ---GHPNIVINNAAGNF  115 (294)
T ss_dssp             ---CSCSEEEECCCCCC
T ss_pred             ---cccchhhhhhhhcc
Confidence               46788888875443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.22  E-value=1.2  Score=35.23  Aligned_cols=83  Identities=13%  Similarity=0.057  Sum_probs=55.0

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +|+++|=-|++.|   .++..|++.+ .+|+.++.+++-++.+.+   +...++.++++|+.+.+ ..+++... ...| 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   78 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAMAA---ELADAARYVHLDVTQPAQWKAAVDTA-VTAF-   78 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HTGGGEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---HhhCcceEEEeecCCHHHHHHHHHHH-HHHh-
Confidence            5788888898877   4566777775 699999999876655544   33467889999997753 22222221 1112 


Q ss_pred             CCCCceEEEecCCCC
Q psy17126        127 EGLPGIRIIGNLPFN  141 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~  141 (240)
                        +..|.+|.|--..
T Consensus        79 --g~idilinnAG~~   91 (244)
T d1nffa_          79 --GGLHVLVNNAGIL   91 (244)
T ss_dssp             --SCCCEEEECCCCC
T ss_pred             --CCCeEEEECCccc
Confidence              4578888887543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=1.4  Score=34.98  Aligned_cols=80  Identities=28%  Similarity=0.314  Sum_probs=51.7

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|++.|   .++..|++.+ .+|+.++.+++-++.+.+   .. +++.++.+|+.+.+ ...++... ...| 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~---~~-~~~~~~~~Dvs~~~~v~~~~~~~-~~~~-   77 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQ---EL-PGAVFILCDVTQEDDVKTLVSET-IRRF-   77 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HC-TTEEEEECCTTSHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---hc-CCCeEEEccCCCHHHHHHHHHHH-HHhc-
Confidence            5788999998776   3455666665 699999999877665543   22 46888999997743 22222211 1112 


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                        ++.|.+|.|--
T Consensus        78 --g~iDilVnnAG   88 (250)
T d1ydea1          78 --GRLDCVVNNAG   88 (250)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEeccc
Confidence              45788888764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.98  E-value=1.6  Score=34.71  Aligned_cols=82  Identities=13%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .++++|=-|++.|.   ++..|++.+ .+|+.++.+.+-++.+.+.+.. .+++.++++|+.+.+ ...++... ...| 
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTT-IAKH-   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence            57888989977663   234455554 6999999998877766554432 356888999997643 22222221 1112 


Q ss_pred             CCCCceEEEecC
Q psy17126        127 EGLPGIRIIGNL  138 (240)
Q Consensus       127 ~~~~~~~VvsNl  138 (240)
                        +..|.+|.|-
T Consensus        81 --g~iD~lVnnA   90 (268)
T d2bgka1          81 --GKLDIMFGNV   90 (268)
T ss_dssp             --SCCCEEEECC
T ss_pred             --CCcceecccc
Confidence              4578888765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.87  E-value=1.2  Score=35.27  Aligned_cols=84  Identities=10%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHH-HHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDM-LAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~-~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      +++++|=-|++.|   .++..|++.+ .+|+.++.+.+-++.+.+ ..+..+.++..+.+|+.+.+ ...++... ...|
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV-KEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH-HHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHH-HHHc
Confidence            4788899998766   3456666765 699999999876655443 33344567889999998643 22222221 1112


Q ss_pred             cCCCCceEEEecCC
Q psy17126        126 SEGLPGIRIIGNLP  139 (240)
Q Consensus       126 ~~~~~~~~VvsNlP  139 (240)
                         +..|.+|.|--
T Consensus        82 ---g~iDiLVnnAG   92 (251)
T d1vl8a_          82 ---GKLDTVVNAAG   92 (251)
T ss_dssp             ---SCCCEEEECCC
T ss_pred             ---CCCCEEEECCC
Confidence               45788888753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.16  E-value=0.97  Score=35.95  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHH-HHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDM-LAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW  125 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~-~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~  125 (240)
                      .++++|=-|.+.|.   ++..|++.+ .+|+.++.+.+-+..+.+ ..+..+.++..+++|+.+.+ ...++... ...|
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI-DADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH-HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH-HHHh
Confidence            47788888976652   456666665 699999999876654433 33334578999999998754 22222211 1112


Q ss_pred             cCCCCceEEEecCCCC
Q psy17126        126 SEGLPGIRIIGNLPFN  141 (240)
Q Consensus       126 ~~~~~~~~VvsNlPY~  141 (240)
                         ++.|.+|.|-...
T Consensus        86 ---g~iDilVnnAg~~   98 (260)
T d1h5qa_          86 ---GPISGLIANAGVS   98 (260)
T ss_dssp             ---CSEEEEEECCCCC
T ss_pred             ---CCCcEeccccccc
Confidence               4678899887544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.94  E-value=1.6  Score=34.39  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+   +. .++..+..|+.+.+- .+.+.        
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~---~~-~~~~~~~~Dv~~~~~v~~~~~--------   70 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAK---EC-PGIEPVCVDLGDWDATEKALG--------   70 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HS-TTCEEEECCTTCHHHHHHHHT--------
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---hc-CCCeEEEEeCCCHHHHHHHHH--------
Confidence            57889988987662   455666665 799999999766554443   22 457888999876431 12221        


Q ss_pred             CCCCceEEEecCC
Q psy17126        127 EGLPGIRIIGNLP  139 (240)
Q Consensus       127 ~~~~~~~VvsNlP  139 (240)
                      .-++.|.+|.|--
T Consensus        71 ~~g~iDilVnnAg   83 (242)
T d1cyda_          71 GIGPVDLLVNNAA   83 (242)
T ss_dssp             TCCCCSEEEECCC
T ss_pred             HcCCCeEEEECCc
Confidence            1256788888743

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.65  E-value=1.7  Score=34.44  Aligned_cols=86  Identities=12%  Similarity=0.036  Sum_probs=56.6

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      .|+++|=-|++.|.   ++..|++.+ .+|+.++.+++-++.+.+.+...+.++.++.+|+.+.+ ...++... ...| 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTV-ANHF-   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHH-HHHh-
Confidence            57889988987663   456666665 69999999988877666655555577889999997643 22222211 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                       +++.|.+|.|--.
T Consensus        84 -~~~idilvnnAG~   96 (259)
T d2ae2a_          84 -HGKLNILVNNAGI   96 (259)
T ss_dssp             -TTCCCEEEECCCC
T ss_pred             -CCCceEEEECCce
Confidence             1257888887643

>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]

Probab=83.18  E-value=0.99  Score=30.39  Aligned_cols=39  Identities=15%  Similarity=0.060  Sum_probs=34.5

Q ss_pred             hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126        166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE  204 (240)
Q Consensus       166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~  204 (240)
                      -..+++|-.+||+|.+++.+||.+++.+|.+.+.+.+.+
T Consensus        41 iy~~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vl~~   79 (88)
T d1tdza1          41 IYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQK   79 (88)
T ss_dssp             HHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHcCHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999988875543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.05  E-value=1.1  Score=35.64  Aligned_cols=83  Identities=14%  Similarity=0.082  Sum_probs=53.3

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++++|=-|++.|   .++..|++.+ .+|+.++.+++-++.+.+.   .+.+..++.+|+.+.. ...++... ...| 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~-~~~~-   78 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAE---LGERSMFVRHDVSSEADWTLVMAAV-QRRL-   78 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH---HCTTEEEECCCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---hCCCeEEEEeecCCHHHHHHHHHHH-HHHh-
Confidence            5778888887766   3456666665 6999999998776655543   3467888999987643 22222211 1122 


Q ss_pred             CCCCceEEEecCCCC
Q psy17126        127 EGLPGIRIIGNLPFN  141 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~  141 (240)
                        +..|.+|.|--..
T Consensus        79 --g~iDilVnnAG~~   91 (253)
T d1hxha_          79 --GTLNVLVNNAGIL   91 (253)
T ss_dssp             --CSCCEEEECCCCC
T ss_pred             --CCCCeEEeccccc
Confidence              4578888887543

>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: Endonuclease VIII
species: Escherichia coli [TaxId: 562]

Probab=82.04  E-value=1  Score=30.23  Aligned_cols=39  Identities=13%  Similarity=0.105  Sum_probs=34.1

Q ss_pred             hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126        166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE  204 (240)
Q Consensus       166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~  204 (240)
                      -..+++|-.++|+|.++..+||-+++.+|++.+...+..
T Consensus        45 ~~~~EiL~~a~i~P~~~~~~L~~~~~~~L~~~~~~v~~~   83 (89)
T d1k3xa1          45 YLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRF   83 (89)
T ss_dssp             HHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCchhhCCHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999988775543

>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Thermus thermophilus [TaxId: 274]

Probab=81.85  E-value=1.1  Score=30.12  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126        166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE  204 (240)
Q Consensus       166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~  204 (240)
                      -..+++|-.+||+|.+++.+||-+++..|++.+.+.+.+
T Consensus        41 ~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~~vl~~   79 (89)
T d1ee8a1          41 IYADEALFRARLSPFRPARSLTEEEARRLYRALREVLAE   79 (89)
T ss_dssp             HHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhhCCHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999988875543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.77  E-value=1.4  Score=34.94  Aligned_cols=83  Identities=12%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +++++|=-|++.|   .++..|++.+ .+|+.++.+.+-++.+.+   +.+.++..+.+|+.+.+ ...++... ...| 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~---~~~~~~~~~~~Dvt~~~~v~~~~~~~-~~~~-   77 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAA---EIGPAACAIALDVTDQASIDRCVAEL-LDRW-   77 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHH---HHCTTEEEEECCTTCHHHHHHHHHHH-HHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---HhCCceEEEEeeCCCHHHHHHHHHHH-HHHh-
Confidence            4678888898776   4556666665 699999999876655443   33567889999997643 22222221 1112 


Q ss_pred             CCCCceEEEecCCCC
Q psy17126        127 EGLPGIRIIGNLPFN  141 (240)
Q Consensus       127 ~~~~~~~VvsNlPY~  141 (240)
                        ++.|.+|.|--..
T Consensus        78 --g~iDilVnnAg~~   90 (256)
T d1k2wa_          78 --GSIDILVNNAALF   90 (256)
T ss_dssp             --SCCCEEEECCCCC
T ss_pred             --CCccEEEeecccc
Confidence              4678888886543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=81.14  E-value=1.3  Score=32.94  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             HHHHHcCCCCCCEEEEECCc--hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126         42 KIVRNAGTITGNEVCEVGPG--PGSITRSILNRRPARLVLIEKDPRFTPCLDM   92 (240)
Q Consensus        42 ~iv~~~~~~~~~~VLEIG~G--tG~lt~~La~~~~~~V~avEid~~m~~~l~~   92 (240)
                      .+.+..++++|++||=.|+|  .|..+..+++....+|+++.-+++-.+.+++
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~   72 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ   72 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh
Confidence            34456778999999987874  4667788888766899999999887777664

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.04  E-value=1.7  Score=34.13  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126         51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS  126 (240)
Q Consensus        51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~  126 (240)
                      +|+++|=-|++.|   .++..|++.+ .+|+.++.+++-++.+.+..   +.+...+.+|+.+.+ ...++... ...| 
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~-~~~~-   76 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYL---GANGKGLMLNVTDPASIESVLEKI-RAEF-   76 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHH-HHHT-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhh-hccc-
Confidence            4677787787766   3455666665 69999999988776665433   356788899987643 22222221 1112 


Q ss_pred             CCCCceEEEecCCC
Q psy17126        127 EGLPGIRIIGNLPF  140 (240)
Q Consensus       127 ~~~~~~~VvsNlPY  140 (240)
                        ++.|.+|.|--.
T Consensus        77 --g~iDilVnnAg~   88 (243)
T d1q7ba_          77 --GEVDILVNNAGI   88 (243)
T ss_dssp             --CSCSEEEECCCC
T ss_pred             --CCcceehhhhhh
Confidence              467888887543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.55  E-value=1.7  Score=34.43  Aligned_cols=83  Identities=11%  Similarity=0.029  Sum_probs=52.0

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEccccccc-ccccchhhhcc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFT-MQNMFSEDRRR  123 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~-~~~~~~~~~~~  123 (240)
                      .++.+|=-|++.|.   ++..|++.+ .+|+.++.+.+-++.+.+.+...+   .++.++.+|+.+.+ ...++... ..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~-~~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT-LG   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH-HH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH-HH
Confidence            46777777776553   235555665 699999999888776665443322   46899999997653 22222211 11


Q ss_pred             cccCCCCceEEEecC
Q psy17126        124 DWSEGLPGIRIIGNL  138 (240)
Q Consensus       124 ~~~~~~~~~~VvsNl  138 (240)
                      .|   ++.|.+|.|-
T Consensus        82 ~~---g~iDilvnnA   93 (264)
T d1spxa_          82 KF---GKLDILVNNA   93 (264)
T ss_dssp             HH---SCCCEEEECC
T ss_pred             Hh---CCCCEeeccc
Confidence            22   4678888884

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.50  E-value=2.3  Score=33.52  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-C-CCCeEEEEccccccc-ccccchhhhccc
Q psy17126         51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-S-PCPVHFHLGDVMSFT-MQNMFSEDRRRD  124 (240)
Q Consensus        51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~-~~~v~vi~~D~~~~~-~~~~~~~~~~~~  124 (240)
                      .|+++|=-|++.|.   ++..|++.+ .+|+.++.+.+-++.+.+.+.. . +.++.++.+|+.+.+ ..+++... ...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV-VDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH-HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHH-HHH
Confidence            46788888876553   234455554 7999999998877666554332 2 257889999998753 22222211 111


Q ss_pred             ccCCCCceEEEecCCCCC
Q psy17126        125 WSEGLPGIRIIGNLPFNV  142 (240)
Q Consensus       125 ~~~~~~~~~VvsNlPY~I  142 (240)
                      |   ++.|.+|.|--...
T Consensus        80 ~---G~iDilVnnAg~~~   94 (254)
T d2gdza1          80 F---GRLDILVNNAGVNN   94 (254)
T ss_dssp             H---SCCCEEEECCCCCC
T ss_pred             c---CCcCeecccccccc
Confidence            2   46789998876443