Psyllid ID: psy17138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Secondary Structure (PSIPRED)
ccEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHHccccEEEHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccEEEEEEcHHHcccccccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEHHHcccHHHHHHHHHHccccccEEEEEEEEccccccccccHHcccccHHHHHHHHHcccccccccccccccEEEEEcccccccHHHHHHHHHHccccEEcHHHHHHHHcccccHHHHHHHHHHcHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHccHHHHccEEEEEEccccc
Coil and Loop (DISEMBL)
nlivsaetqgggvkvnelrvanslkpldvvsvpllpsdgkvdeqeedklsSSNLRMRElgtlrkpvqpkphlspypyiigltggiasGKSTIAKYLETLGaglincdqlghraydvgtrGNQVVRELFgedialpdgsidrkklgAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Flexible Loop (DISEMBL)
nlivsaetqgggvkvnelrvanslkpldvvsvpllpsdgkvdeqeedklsssnlrmrelgtlrkpvqpkphlsPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGedialpdgsidrkKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Low Complexity Region (SEG)
NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Disordered region (IsUnstruct)
*******************V******LDVV*****************************************LSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI****
Disordered Region (DISOPRED)
NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPS*****************RMRELGTLRKP*******SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ*
Disordered Region (DISEMBL)
*********GGGVKVNELRVANSLKPLDVVSVPLLPSDGK***********SNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Disordered Region (DISPRO)
NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSD************SSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q8MIR4	562	Bifunctional coenzyme A s	yes	N/A	0.990	0.373	0.471	6e-46
Q13057	564	Bifunctional coenzyme A s	yes	N/A	0.990	0.372	0.476	3e-45
Q9DBL7	563	Bifunctional coenzyme A s	yes	N/A	0.990	0.373	0.452	6e-43
Q74FU2	197	Dephospho-CoA kinase OS=G	yes	N/A	0.632	0.680	0.437	1e-22
Q3ABL6	206	Dephospho-CoA kinase OS=C	yes	N/A	0.636	0.655	0.419	1e-22
Q39R83	201	Dephospho-CoA kinase OS=G	yes	N/A	0.608	0.641	0.446	5e-22
Q3Z6W5	198	Dephospho-CoA kinase OS=D	yes	N/A	0.603	0.646	0.385	2e-20
Q3ZYN7	198	Dephospho-CoA kinase OS=D	yes	N/A	0.603	0.646	0.371	8e-20
Q74IB6	198	Dephospho-CoA kinase OS=L	yes	N/A	0.632	0.676	0.345	5e-19
Q5N2P0	209	Dephospho-CoA kinase OS=S	yes	N/A	0.613	0.622	0.401	1e-18

>sp|Q8MIR4|COASY_PIG Bifunctional coenzyme A synthase OS=Sus scrofa GN=COASY PE=1 SV=1

 Score =  183 bits (465), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 135/212 (63%), Gaps = 2/212 (0%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           L+VS ET  GG+ VN  R+ N L+ L +  + LL  D    E EEDK+SSS+ R + LG 
Sbjct: 284 LVVSEETYRGGMAVNRFRLENGLEELTLYQIQLL-KDLNPKENEEDKVSSSSFRQQMLGN 342

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
           L +P   +P L P  Y+IGLTG   SGKS++A+ L+ LGA +I+ DQLGHR+Y  G    
Sbjct: 343 LLRPPHKRPELPPGCYVIGLTGISGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAY 402

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
           Q V E FG DI   DG+I+RK LG+ VF NK ++  L   +WP+I    +EE+ + ++E 
Sbjct: 403 QPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQLKILTDIVWPVIAKLAREEVDQAVAEG 462

Query: 181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
            +V VI+AAVLL A WQ+ VHE+W   IPE E
Sbjct: 463 KRVCVIDAAVLLEAGWQNMVHEVWTVVIPETE 494

Bifunctional enzyme that catalyzes the fourth and fifth sequential steps of CoA biosynthetic pathway. The fourth reaction is catalyzed by the phosphopantetheine adenylyltransferase, coded by the coaD domain; the fifth reaction is catalyzed by the dephospho-CoA kinase, coded by the coaE domain. May act as a point of CoA biosynthesis regulation.
Sus scrofa (taxid: 9823)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 4

>sp|Q13057|COASY_HUMAN Bifunctional coenzyme A synthase OS=Homo sapiens GN=COASY PE=1 SV=4

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/212 (47%), Positives = 133/212 (62%), Gaps = 2/212 (0%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           L+VS ET  GG+ +N  R+ N L+ L +  + LL  D +  E EEDK+SSS+ R R LG 
Sbjct: 285 LVVSEETYRGGMAINRFRLENDLEELALYQIQLL-KDLRHTENEEDKVSSSSFRQRMLGN 343

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
           L +P   +P L    Y+IGLTG   SGKS+IA+ L+ LGA +I+ D LGHRAY  G    
Sbjct: 344 LLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAY 403

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
           Q V E FG DI   DG I+RK LG+ VF NK ++  L   +WP+I    +EE+ R ++E 
Sbjct: 404 QPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKLAREEMDRAVAEG 463

Query: 181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
            +V VI+AAVLL A WQ+ VHE+W   IPE E
Sbjct: 464 KRVCVIDAAVLLEAGWQNLVHEVWTAVIPETE 495

Bifunctional enzyme that catalyzes the fourth and fifth sequential steps of CoA biosynthetic pathway. The fourth reaction is catalyzed by the phosphopantetheine adenylyltransferase, coded by the coaD domain; the fifth reaction is catalyzed by the dephospho-CoA kinase, coded by the coaE domain. May act as a point of CoA biosynthesis regulation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q9DBL7|COASY_MOUSE Bifunctional coenzyme A synthase OS=Mus musculus GN=Coasy PE=1 SV=2

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 130/212 (61%), Gaps = 2/212 (0%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           L+VS ET  GG+ VN  R+ N  + L +  + LL  D   +E EEDK+SSS+ R R LG 
Sbjct: 284 LVVSEETYRGGMAVNRFRLENGKEELALYQIQLL-KDQSHNENEEDKVSSSSFRQRILGN 342

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
           L +P   +P L    Y++GLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct: 343 LLQPPNERPELPSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAY 402

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEI-ARLSES 180
           Q V E FG DI   DG+I+RK LG+ VF NK +M  L   +WP+I    +EE+   +++ 
Sbjct: 403 QPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKG 462

Query: 181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             + VI+AA+LL A WQ  VHE+W   IPE E
Sbjct: 463 KTLCVIDAAMLLEAGWQSMVHEVWTVVIPETE 494

Bifunctional enzyme that catalyzes the fourth and fifth sequential steps of CoA biosynthetic pathway. The fourth reaction is catalyzed by the phosphopantetheine adenylyltransferase, coded by the coaD domain; the fifth reaction is catalyzed by the dephospho-CoA kinase, coded by the coaE domain. May act as a point of CoA biosynthesis regulation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q74FU2|COAE_GEOSL Dephospho-CoA kinase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=coaE PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 1/135 (0%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           IIGLTGGIASGKST+++ LE LGA +I+ DQL   A   GT  ++ +   FGE I LPDG
Sbjct: 3   IIGLTGGIASGKSTVSRILERLGAVVIDADQLAREAVMPGTSAHRSIVAAFGEGILLPDG 62

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH-KVIVIEAAVLLSAKW 196
           +IDRK LG+I+F++     +L     P I    +  +A L  S   V V  AA+L+ A  
Sbjct: 63  AIDRKALGSIIFADSSARKRLEAITHPAIRDLAELRLAELRRSGVPVAVYMAALLIEAGA 122

Query: 197 QDQVHEIWVTFIPEQ 211
            D+V E+WV ++  +
Sbjct: 123 TDRVDEVWVVYVDRE 137

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q3ABL6|COAE_CARHZ Dephospho-CoA kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=coaE PE=3 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           IIGLTGGIASGKST+++ L+ LG  +I+ D++       G    Q V + FG++I   DG
Sbjct: 6   IIGLTGGIASGKSTVSRILQELGFAIIDADRIARDILTPGHPAYQKVIDTFGKNILTEDG 65

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH-KVIVIEAAVLLSAKW 196
            IDR KLG IVF N++++  LN    P +L +++++I  L+ S    IV++  +L  AK 
Sbjct: 66  QIDRAKLGKIVFGNREKLLVLNSITHPEVLKEIRKKIKELTSSGIDWIVLDIPLLFEAKM 125

Query: 197 QDQVHEIWVTFIPEQE 212
              V EIWV ++PE+E
Sbjct: 126 TSLVDEIWVVYVPEEE 141

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q39R83|COAE_GEOMG Dephospho-CoA kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=coaE PE=3 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 3/132 (2%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           +IGLTGGIASGKST+A+ LE LGA +I+ D L   A   GT  ++ +   FG +I LPD 
Sbjct: 3   VIGLTGGIASGKSTVARILERLGATIIDADLLAREAVLPGTPAHRAIVAAFGTEILLPDA 62

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLI--LAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           +IDRK LG IVF+N D   +L     P I  L+Q +   AR S++  V  + A +L+ A 
Sbjct: 63  TIDRKALGRIVFANPDARRRLEAITHPAIARLSQARLAEARRSDAPAVFYV-APLLIEAG 121

Query: 196 WQDQVHEIWVTF 207
             D+V +IWV +
Sbjct: 122 AADRVDDIWVVY 133

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q3Z6W5|COAE_DEHE1 Dephospho-CoA kinase OS=Dehalococcoides ethenogenes (strain 195) GN=coaE PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 12/140 (8%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAY-DVGTRGNQVVRELFGEDIALPD 136
           I+G+TGGI SGK+T+ +YL+ LG  +I+ D++GHR   + G R    + ++FG ++  PD
Sbjct: 3   IVGITGGIGSGKTTVCRYLKELGVNIIDADEIGHRVLQNKGIRTR--ITDVFGNEVMNPD 60

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH-----KVIVIEAAVL 191
           GSI+RK LG +VF   + +  LN+   PLI    ++ IA L E +     K + IEA +L
Sbjct: 61  GSINRKILGELVFGYPERLEHLNKITHPLI----EQAIASLLEEYRQKGIKAVAIEAPLL 116

Query: 192 LSAKWQDQVHEIWVTFIPEQ 211
           + A W   V+E+W+   P++
Sbjct: 117 VEAGWLKLVNEVWLITAPKE 136

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Dehalococcoides ethenogenes (strain 195) (taxid: 243164)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q3ZYN7|COAE_DEHSC Dephospho-CoA kinase OS=Dehalococcoides sp. (strain CBDB1) GN=coaE PE=3 SV=1

 Score = 97.1 bits (240), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 87/140 (62%), Gaps = 12/140 (8%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAY-DVGTRGNQVVRELFGEDIALPD 136
           I+G+TGGI SGK+T+ +YL+ LG  +I+ D++GHR   + G R    + ++FG ++  PD
Sbjct: 3   IVGITGGIGSGKTTVCRYLKELGVNIIDADEIGHRVLQNKGIRTK--ITDVFGNEVMNPD 60

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH-----KVIVIEAAVL 191
           G+I+RK LG +VF   + + +LN+   PLI    ++ I+ L E +     K + IEA +L
Sbjct: 61  GNINRKILGELVFGYPERLERLNKITHPLI----EQAISSLLEEYRQKGIKSVAIEAPLL 116

Query: 192 LSAKWQDQVHEIWVTFIPEQ 211
           + A W   V+E+W+   P++
Sbjct: 117 VEAGWLKLVNEVWLITAPKE 136

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Dehalococcoides sp. (strain CBDB1) (taxid: 255470)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q74IB6|COAE_LACJO Dephospho-CoA kinase OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=coaE PE=3 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 85/136 (62%), Gaps = 2/136 (1%)

Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           Y +GLTGGIASGKST  ++ +     +I+ D + H+  ++G  G + V + FG DI   D
Sbjct: 3   YFLGLTGGIASGKSTADEFFKKKKIPIIDSDLIAHQIMEIGQNGYKAVVDYFGTDILNDD 62

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SESHKVIVIEAAVLLSAK 195
            +I+R+KLG IVF++K ++ KLN+   PL+  ++K+++AR  +   K++VI+  +L  + 
Sbjct: 63  QTINRRKLGGIVFNDKAKLKKLNELTHPLVHQEIKQQMARYRANQEKLVVIDVPLLFESG 122

Query: 196 WQDQVHEIW-VTFIPE 210
           ++   + +  ++  PE
Sbjct: 123 FESLCNGVLAISITPE 138

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) (taxid: 257314)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q5N2P0|COAE_SYNP6 Dephospho-CoA kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=coaE PE=3 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 79  IGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           IGLTGGIA+GKST+A YL +     +++ D+       VG+   QV+R+ +G  I L DG
Sbjct: 14  IGLTGGIATGKSTVADYLRDRYQLPILDADRYAREVVAVGSPVLQVIRDRYGASILLADG 73

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ 197
            +DR+KLG+I+F++  E   L Q   P I A  + ++A+L ES  ++V+   +L  A  Q
Sbjct: 74  QLDRQKLGSIIFADPAERQWLEQQTHPAIRACFERDLAQL-ESDPIVVLVIPLLFEAGLQ 132

Query: 198 DQVHEIWVTFIP 209
           D V +IWV   P
Sbjct: 133 DWVEQIWVVACP 144

Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
193620193	516	PREDICTED: bifunctional coenzyme A synth	0.990	0.406	0.542	4e-59
307206634	526	Bifunctional coenzyme A synthase [Harpeg	0.981	0.395	0.516	4e-50
170046314	505	bifunctional coenzyme A synthase [Culex	0.990	0.415	0.497	9e-50
307169041	523	Bifunctional coenzyme A synthase [Campon	0.976	0.395	0.518	2e-48
118786503	521	AGAP005460-PA [Anopheles gambiae str. PE	0.990	0.403	0.457	3e-48
345485258	525	PREDICTED: bifunctional coenzyme A synth	0.976	0.394	0.514	4e-48
94468668	507	possible dephospho-CoA kinase [Aedes aeg	0.990	0.414	0.492	6e-48
157138070	507	hypothetical protein AaeL_AAEL003770 [Ae	0.990	0.414	0.492	6e-48
340716805	526	PREDICTED: bifunctional coenzyme A synth	0.976	0.393	0.495	7e-48
242003255	511	conserved hypothetical protein [Pediculu	0.990	0.410	0.455	1e-47

>gi|193620193|ref|XP_001944795.1| PREDICTED: bifunctional coenzyme A synthase-like isoform 1 [Acyrthosiphon pisum] gi|328712813|ref|XP_003244909.1| PREDICTED: bifunctional coenzyme A synthase-like isoform 2 [Acyrthosiphon pisum]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 151/214 (70%), Gaps = 4/214 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVD---EQEEDKLSSSNLRMRE 58
           +I+S ET  GG  +NE R+  +L+PLD++ VPLL  D       E+EE K+SSSN RMR 
Sbjct: 239 IILSEETVKGGELINEKRIQANLRPLDIIPVPLLEEDKSTSDCCEEEEQKISSSNYRMRM 298

Query: 59  LGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGT 118
           LGTL KP QP P++   PYIIGLTGGIASGKS+IA YL+ LGA +IN D + H+ YD+  
Sbjct: 299 LGTLLKPPQPNPNIPSCPYIIGLTGGIASGKSSIANYLKDLGAFVINADTVAHKLYDINQ 358

Query: 119 RGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLS 178
              Q V ++FG  I   +  +DRKKLGAIVFS+KD+M +LN  +WPLIL +VK  I + +
Sbjct: 359 PAYQAVIDVFGSSILTTNKEVDRKKLGAIVFSDKDKMEQLNTILWPLILKRVK-SIIQST 417

Query: 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
           + H ++V+EAAVLLSA WQD  HEIWV+ IP +E
Sbjct: 418 KGHNIVVLEAAVLLSANWQDHCHEIWVSIIPRKE 451

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206634|gb|EFN84613.1| Bifunctional coenzyme A synthase [Harpegnathos saltator]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 144/213 (67%), Gaps = 5/213 (2%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET+ GG KVNELR+  +L  LD+ +V L  +D   DE EE K+SSSN R+R LGT
Sbjct: 249 IVVSQETKRGGDKVNELRLQKNLSKLDIHTVKL-ANDEHYDEHEEAKISSSNHRIRLLGT 307

Query: 62  LRKPVQPKPHLSPY-PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG 120
              P  P+ +  P  PYIIGLTGGIASGKS++A+ L+ LGA L+NCD+L H  Y  G   
Sbjct: 308 RLHP--PRLNDKPLKPYIIGLTGGIASGKSSVAEKLQKLGASLVNCDKLAHDLYLPGKVC 365

Query: 121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SE 179
              + E FG  I   DG IDRK L  IVF++K ++ KLN+ IWPLIL + K+EI  L S+
Sbjct: 366 FDKIVEYFGSSILNSDGYIDRKALSNIVFNDKAQLEKLNKLIWPLILHEAKKEITTLHSK 425

Query: 180 SHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
            H ++V+EAAVL+ AKWQ+  HEIW   IP++E
Sbjct: 426 GHDIVVMEAAVLIQAKWQNVCHEIWTCIIPQKE 458

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046314|ref|XP_001850715.1| bifunctional coenzyme A synthase [Culex quinquefasciatus] gi|167869113|gb|EDS32496.1| bifunctional coenzyme A synthase [Culex quinquefasciatus]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 141/213 (66%), Gaps = 3/213 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET  GG KVNELR  N L  L+V ++ LL  +  VD++E DK+SSSN RM  LGT
Sbjct: 229 IVVSTETARGGAKVNELRTKNGLNQLEVHTIELLDDESTVDDKE-DKISSSNQRMDLLGT 287

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             KP Q KP+LSP PYIIGL GG+ASGKS +A+  + LGAG+I+CD++ H  Y+ G    
Sbjct: 288 RLKPRQQKPNLSPKPYIIGLVGGVASGKSKMAERFQKLGAGVIDCDKIAHELYEPGEECY 347

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH 181
           Q V   FG  I   D +I+RK LGAIVF++ D+++ LN  +W  IL + K+ I  L E  
Sbjct: 348 QAVVNNFGLGILNEDKTINRKALGAIVFADPDKLDLLNTILWDAILERAKQRIVELHEQQ 407

Query: 182 --KVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             ++I++EAAVLL A WQ   HEIW   IP++E
Sbjct: 408 NKQIIIMEAAVLLKAGWQSACHEIWSCIIPKEE 440

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169041|gb|EFN61885.1| Bifunctional coenzyme A synthase [Camponotus floridanus]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/214 (51%), Positives = 145/214 (67%), Gaps = 7/214 (3%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET+ GG K+NELR+  +L  LD+  V L   D   +E EE K+SSSN R+R LGT
Sbjct: 248 IVVSEETKRGGDKINELRLQKNLSKLDIYIVEL-AGDECYNEIEEAKISSSNHRIRLLGT 306

Query: 62  -LRKP-VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTR 119
            L+ P +  KP     PYIIGLTGGIASGKS++A+ LE LGAGL+NCD+L H  Y  G  
Sbjct: 307 RLQAPRINDKP---SEPYIIGLTGGIASGKSSVAEKLEKLGAGLVNCDKLAHDLYLPGKD 363

Query: 120 GNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-S 178
               + E FG  I   DG I+RK LG IVF+NK+++ KLN+ IWPLIL + K++I  L S
Sbjct: 364 CFHAILEHFGSSILNSDGFINRKLLGDIVFNNKEQLEKLNKLIWPLILQEAKKQIDILYS 423

Query: 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
           + + +IV+EAAVL+ AKWQ+  HEIW   IP+ E
Sbjct: 424 KGYNIIVMEAAVLIQAKWQNVCHEIWTCIIPQNE 457

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786503|ref|XP_315463.3| AGAP005460-PA [Anopheles gambiae str. PEST] gi|116126354|gb|EAA11969.3| AGAP005460-PA [Anopheles gambiae str. PEST]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 141/214 (65%), Gaps = 4/214 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET  GG KVNELR  N L  L+V ++ LL  +  V E +EDK+SSSN RM  LGT
Sbjct: 243 IVVSTETARGGAKVNELRAQNGLNQLEVHTIELLDDESTV-EDKEDKISSSNQRMDLLGT 301

Query: 62  LRKPVQPKP-HLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG 120
             +P +P P H+ P PYIIG+ GGIA+GKS + +    LGAG+++CD++GH+ Y+ G   
Sbjct: 302 RLRPRRPAPTHILPKPYIIGMIGGIAAGKSKMLERFRELGAGVVDCDKIGHQLYEPGEEC 361

Query: 121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES 180
            + V   FG +I  PDG I+R+ LGAIVF+++ ++++LN+ +W  I  +  EEI  L E 
Sbjct: 362 YEQVVATFGREILAPDGKINRRALGAIVFADRAKLDRLNEIMWKAIAKRANEEIRTLHEQ 421

Query: 181 H--KVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
           H  +V+V+EAAV+L A W    HE+W   +P +E
Sbjct: 422 HGKQVVVMEAAVMLQAGWHKNCHEVWSCIVPREE 455

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485258|ref|XP_001600737.2| PREDICTED: bifunctional coenzyme A synthase-like [Nasonia vitripennis]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 7/214 (3%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET+ GG  VN+ R  N+LK LD+  V LL  D    E EE K+SSSN RMR LGT
Sbjct: 249 IVVSEETEKGGKLVNDKRKENNLKLLDIHVVKLL-EDSNHQEHEEAKISSSNHRMRLLGT 307

Query: 62  -LRKP-VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTR 119
            L+KP    KP     PY+IGLTGGIASGKS+IA  LE LGAGLINCD + H  Y  G +
Sbjct: 308 RLKKPNTDGKP---IRPYVIGLTGGIASGKSSIADKLEKLGAGLINCDLIAHALYSPGEK 364

Query: 120 GNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-S 178
              +V E FG D  LPDG I+RK LG +VF++K E+ KLN+ +WP+I  + + ++  L  
Sbjct: 365 CYNLVVEAFGHDYLLPDGQINRKALGNLVFNDKHELEKLNKLLWPVIRKETERKVNDLYQ 424

Query: 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
           +   V+V+EAAVL+ A WQ   HEIW   IP+QE
Sbjct: 425 QGFNVVVVEAAVLIQAGWQCMFHEIWTCIIPQQE 458

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468668|gb|ABF18183.1| possible dephospho-CoA kinase [Aedes aegypti]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 136/213 (63%), Gaps = 3/213 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET  GG KVNELR  N L  L V ++ LL  D   +E +EDK+SSSN+RM  LGT
Sbjct: 231 IVVSTETARGGAKVNELRAKNGLNQLRVRTIDLL-DDELTEEDKEDKISSSNMRMDLLGT 289

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             KP   KPHLSP PYIIGL GG+A+GKS +A+    LGAG+I+CD++ H  Y+ G    
Sbjct: 290 RLKPRDLKPHLSPKPYIIGLVGGVAAGKSKMAERFAKLGAGVIDCDKIAHELYEPGEDCY 349

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH 181
           Q V   FG  I   D +I RK LGAIVFS+ D+++ LN  +W  IL + K  I  + E  
Sbjct: 350 QTVINNFGVGILNEDKTIHRKALGAIVFSDPDKLDLLNTILWDAILERTKLRIKEIYEKQ 409

Query: 182 --KVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             ++I++EAAVLL A WQ+  HEIW   IP +E
Sbjct: 410 NKQIIIMEAAVLLRAGWQNACHEIWSCIIPREE 442

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138070|ref|XP_001657223.1| hypothetical protein AaeL_AAEL003770 [Aedes aegypti] gi|108880707|gb|EAT44932.1| AAEL003770-PA [Aedes aegypti]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 136/213 (63%), Gaps = 3/213 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET  GG KVNELR  N L  L V ++ LL  D   +E +EDK+SSSN+RM  LGT
Sbjct: 231 IVVSTETARGGAKVNELRAKNGLNQLRVRTIDLL-DDELTEEDKEDKISSSNMRMDLLGT 289

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             KP   KPHLSP PYIIGL GG+A+GKS +A+    LGAG+I+CD++ H  Y+ G    
Sbjct: 290 RLKPRDLKPHLSPKPYIIGLVGGVAAGKSKMAERFAKLGAGVIDCDKIAHELYEPGEDCY 349

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESH 181
           Q V   FG  I   D +I RK LGAIVFS+ D+++ LN  +W  IL + K  I  + E  
Sbjct: 350 QTVINNFGVGILNEDKTIHRKALGAIVFSDPDKLDLLNTILWDAILERTKLRIKEIYEKQ 409

Query: 182 --KVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             ++I++EAAVLL A WQ+  HEIW   IP +E
Sbjct: 410 NKQIIIMEAAVLLRAGWQNACHEIWSCIIPREE 442

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716805|ref|XP_003396883.1| PREDICTED: bifunctional coenzyme A synthase-like [Bombus terrestris]

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 148/214 (69%), Gaps = 7/214 (3%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           L+VS ET+ GG KVNE+R  N+L  LD+  V L+ +D    + EE K+SSSN R+R LGT
Sbjct: 250 LVVSEETKRGGDKVNEMREKNNLNKLDIHVVKLI-NDENHKKHEESKVSSSNQRIRLLGT 308

Query: 62  -LRKP-VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTR 119
            L+ P +  KP     PYIIGLTGGIASGKS++A+ L+ LGA L+NCD++ H  Y  G +
Sbjct: 309 KLKAPEIGNKP---LKPYIIGLTGGIASGKSSVAEKLQKLGAALVNCDKIAHDLYLPGKK 365

Query: 120 GNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-S 178
              ++ E FG  I  PDGSIDR+ LG IVF+++ +++KLN+ +WP+IL + K++I    +
Sbjct: 366 CFDMIVENFGPTILKPDGSIDRRALGNIVFNDQTQLSKLNKIVWPIILEEAKKQIYDFNT 425

Query: 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
           +   VIV+EAAVL+ AKWQ + HEIW   IP++E
Sbjct: 426 KGFDVIVMEAAVLIQAKWQHECHEIWTCIIPQEE 459

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003255|ref|XP_002422668.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505479|gb|EEB09930.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 143/213 (67%), Gaps = 3/213 (1%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VSAET  G +K+N++R  N+L  LD+  V  +  D   +  EE K+SSSN R+R LG+
Sbjct: 235 IVVSAETYQGALKINQIRKENNLNELDI-HVVKVAKDKFSNGIEEKKISSSNARIRLLGS 293

Query: 62  LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             K  +P   L P PYIIGLTGG+ASGK++I +YL +LGAG+I+CD++GH  Y   T   
Sbjct: 294 YLKQPEPNTKLPPKPYIIGLTGGVASGKTSICEYLSSLGAGIIDCDKVGHELYKPQTDIY 353

Query: 122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL--SE 179
           + + +LFGE+I  P+  ++RK+LG IVF+N+D++NKLN  +WP I      E  R+   E
Sbjct: 354 KKLVKLFGENILAPNKEVNRKELGYIVFNNRDKLNKLNDLMWPAIYNYAIVESQRMYKEE 413

Query: 180 SHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             +++ IEAAV++ A+W  +VHE+W   IPE+E
Sbjct: 414 KKEIVFIEAAVMIKAEWHKKVHELWSVIIPEEE 446

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
UNIPROTKB|Q8MIR4	562	COASY "Bifunctional coenzyme A	0.990	0.373	0.471	2.4e-44
UNIPROTKB|Q13057	564	COASY "Bifunctional coenzyme A	0.990	0.372	0.476	2.8e-43
ZFIN|ZDB-GENE-040912-137	554	coasy "Coenzyme A synthase" [D	0.985	0.377	0.483	4.5e-43
UNIPROTKB|E1BEL9	562	COASY "Uncharacterized protein	0.990	0.373	0.466	7.3e-43
UNIPROTKB|E2QU79	615	COASY "Uncharacterized protein	0.990	0.341	0.462	3.2e-42
UNIPROTKB|E2RIA4	564	COASY "Uncharacterized protein	0.990	0.372	0.462	3.2e-42
MGI|MGI:1918993	563	Coasy "Coenzyme A synthase" [M	0.990	0.373	0.452	8.4e-42
RGD|1549767	563	Coasy "CoA synthase" [Rattus n	0.990	0.373	0.443	2.8e-41
FB|FBgn0035632	518	Ppat-Dpck "Bifunctional Phosph	0.985	0.403	0.432	4.6e-41
WB|WBGene00022031	461	Y65B4A.8 [Caenorhabditis elega	0.971	0.446	0.424	1.1e-37

UNIPROTKB|Q8MIR4 COASY "Bifunctional coenzyme A synthase" [Sus scrofa (taxid:9823)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 100/212 (47%), Positives = 135/212 (63%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N L+ L +  + LL  D    E EEDK+SSS+ R + LG 
Sbjct:   284 LVVSEETYRGGMAVNRFRLENGLEELTLYQIQLL-KDLNPKENEEDKVSSSSFRQQMLGN 342

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L P  Y+IGLTG   SGKS++A+ L+ LGA +I+ DQLGHR+Y  G    
Sbjct:   343 LLRPPHKRPELPPGCYVIGLTGISGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAY 402

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
             Q V E FG DI   DG+I+RK LG+ VF NK ++  L   +WP+I    +EE+ + ++E 
Sbjct:   403 QPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQLKILTDIVWPVIAKLAREEVDQAVAEG 462

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
              +V VI+AAVLL A WQ+ VHE+W   IPE E
Sbjct:   463 KRVCVIDAAVLLEAGWQNMVHEVWTVVIPETE 494

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;TAS

GO:0004140 "dephospho-CoA kinase activity" evidence=IDA

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q13057 COASY "Bifunctional coenzyme A synthase" [Homo sapiens (taxid:9606)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 101/212 (47%), Positives = 133/212 (62%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ +N  R+ N L+ L +  + LL  D +  E EEDK+SSS+ R R LG 
Sbjct:   285 LVVSEETYRGGMAINRFRLENDLEELALYQIQLL-KDLRHTENEEDKVSSSSFRQRMLGN 343

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L    Y+IGLTG   SGKS+IA+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   344 LLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAY 403

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
             Q V E FG DI   DG I+RK LG+ VF NK ++  L   +WP+I    +EE+ R ++E 
Sbjct:   404 QPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKLAREEMDRAVAEG 463

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
              +V VI+AAVLL A WQ+ VHE+W   IPE E
Sbjct:   464 KRVCVIDAAVLLEAGWQNLVHEVWTAVIPETE 495

GO:0005524 "ATP binding" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;TAS

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=IDA

GO:0004140 "dephospho-CoA kinase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0009108 "coenzyme biosynthetic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040912-137 coasy "Coenzyme A synthase" [Danio rerio (taxid:7955)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 103/213 (48%), Positives = 135/213 (63%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             ++VS ET+ GG  VN+ RV N L  L +  +PLL    + D +EE K+SSS+LR R LGT
Sbjct:   273 IVVSEETRKGGEAVNKRRVQNGLAELVLYEIPLLKDAHRADIEEE-KISSSSLRTRLLGT 331

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG- 120
             L KP  P+  L   PY+IGLTGG  SGKS+IA+ LE LGA  I+CD LGH AY   T   
Sbjct:   332 LLKPPSPELDLPLCPYVIGLTGGSGSGKSSIARRLEDLGAERIDCDLLGHEAYLPETSAY 391

Query:   121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES 180
             ++V++E FG DI   D SI+R+ LG  VF N++ +  L   +WP I   VK+ I +  + 
Sbjct:   392 HRVIQE-FGTDILNEDKSINRRVLGGKVFGNQERLKALTDIVWPEIARLVKKRIDQAKQQ 450

Query:   181 HK-VIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
              K V V++AAVLL A W   VHE+WV  IPE+E
Sbjct:   451 GKRVCVVDAAVLLEAGWTHLVHEVWVATIPEEE 483

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BEL9 COASY "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 99/212 (46%), Positives = 133/212 (62%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N L+ L +  + LL  D    E EEDK+SSS+ R + LG 
Sbjct:   284 LVVSEETYRGGMAVNRFRLENDLEELTLYQIQLL-KDLNHKENEEDKVSSSSFRQQMLGN 342

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L P  Y+IGLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   343 LLRPPYKRPELPPGFYVIGLTGISGSGKSSVAQRLKGLGAYIIDSDHLGHRAYAPGGPAY 402

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
             Q V E FG DI   DG I+RK LG+ VF NK ++  L   +WP+I    +EE+ + ++E 
Sbjct:   403 QPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPVIAKLAREEMDQAVAEG 462

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
              +V VI+AA+LL A WQ+ VHE+W   IPE E
Sbjct:   463 KRVCVIDAAMLLEAGWQNMVHEVWTVVIPETE 494

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=IEA

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2QU79 COASY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 98/212 (46%), Positives = 131/212 (61%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N L+ L +  + LL  D    + EEDK+SSS+ R R LG 
Sbjct:   340 LVVSEETYRGGMAVNRFRLENDLEELALYQIQLL-KDQSHQDNEEDKVSSSSFRQRMLGN 398

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L    Y+IGLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   399 LLQPPYKRPELPTQLYVIGLTGISGSGKSSVAQRLKGLGAFIIDSDHLGHRAYAPGGPAY 458

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
             Q V E FG DI   DG I+RK LG+ VF NK ++  L   +WP+I    +EE+ + ++E 
Sbjct:   459 QPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPVIAKLAREEMDQAVAEG 518

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
               V VI+AA+LL A WQ+ VHE+W   IPE E
Sbjct:   519 KHVCVIDAAMLLEAGWQNMVHEVWTVVIPETE 550

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA

UNIPROTKB|E2RIA4 COASY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 98/212 (46%), Positives = 131/212 (61%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N L+ L +  + LL  D    + EEDK+SSS+ R R LG 
Sbjct:   285 LVVSEETYRGGMAVNRFRLENDLEELALYQIQLL-KDQSHQDNEEDKVSSSSFRQRMLGN 343

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L    Y+IGLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   344 LLQPPYKRPELPTQLYVIGLTGISGSGKSSVAQRLKGLGAFIIDSDHLGHRAYAPGGPAY 403

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIAR-LSES 180
             Q V E FG DI   DG I+RK LG+ VF NK ++  L   +WP+I    +EE+ + ++E 
Sbjct:   404 QPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPVIAKLAREEMDQAVAEG 463

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
               V VI+AA+LL A WQ+ VHE+W   IPE E
Sbjct:   464 KHVCVIDAAMLLEAGWQNMVHEVWTVVIPETE 495

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA

MGI|MGI:1918993 Coasy "Coenzyme A synthase" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 96/212 (45%), Positives = 130/212 (61%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N  + L +  + LL  D   +E EEDK+SSS+ R R LG 
Sbjct:   284 LVVSEETYRGGMAVNRFRLENGKEELALYQIQLL-KDQSHNENEEDKVSSSSFRQRILGN 342

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L    Y++GLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   343 LLQPPNERPELPSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAY 402

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEI-ARLSES 180
             Q V E FG DI   DG+I+RK LG+ VF NK +M  L   +WP+I    +EE+   +++ 
Sbjct:   403 QPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKG 462

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
               + VI+AA+LL A WQ  VHE+W   IPE E
Sbjct:   463 KTLCVIDAAMLLEAGWQSMVHEVWTVVIPETE 494

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004140 "dephospho-CoA kinase activity" evidence=ISO;ISA;IDA

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=ISO;ISA;IMP;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IMP

GO:0009058 "biosynthetic process" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=ISA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

RGD|1549767 Coasy "CoA synthase" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 94/212 (44%), Positives = 130/212 (61%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             L+VS ET  GG+ VN  R+ N  + L +  + LL  D    E EE+K+SSS+ R R LG 
Sbjct:   284 LVVSEETYRGGMAVNRFRLENGKEELALYQIQLL-KDQSHKENEEEKVSSSSFRQRILGN 342

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGN 121
             L +P   +P L    Y++GLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    
Sbjct:   343 LLQPPNERPELPSGIYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAY 402

Query:   122 QVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEI-ARLSES 180
             Q V E FG DI   DG+I+RK LG+ VF NK ++  L   +WP+I    +EE+   +++ 
Sbjct:   403 QPVVEAFGTDILHQDGTINRKVLGSRVFGNKKQLKMLTDIVWPVIAKLAREEMDVAVAKG 462

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
               + VI+AA+LL A WQ+ VHE+W   IPE E
Sbjct:   463 KTLCVIDAAMLLEAGWQNMVHEVWTVVIPESE 494

GO:0003674 "molecular_function" evidence=ND

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA;ISO

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=ISO

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;ISO

GO:0016310 "phosphorylation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0035632 Ppat-Dpck "Bifunctional Phosphopantetheine adenylyltransferase - Dephospho-CoA kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/215 (43%), Positives = 137/215 (63%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             ++VSAET  GG KVNE+R A  L+ L++  + ++ S+   D   E K+SSSN R+  LGT
Sbjct:   238 IVVSAETLRGGQKVNEVRSAKQLRELEIFVIDIVESNVH-DGIHETKVSSSNTRIDLLGT 296

Query:    62 L-RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG 120
               R+P +P+P L P PYIIGLTGGIASGKS + + L  +GA +I+CD++ H  Y+ G   
Sbjct:   297 RWRRP-EPRPQLPPRPYIIGLTGGIASGKSKMGERLANMGAHVIDCDKVAHDVYEPGQLC 355

Query:   121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SE 179
                + + FG+ I   DG IDR KLG +VF++  ++  LN  +WP ++A+V   +  L S+
Sbjct:   356 YTRIVQHFGQGIVSDDGRIDRSKLGPLVFADPKQLQALNGIVWPELIAEVNRRLDALRSQ 415

Query:   180 SH--KVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
             +   +V+V+EAAVLL A W+   HE+W   +P  E
Sbjct:   416 ADVPRVVVLEAAVLLRAGWETNCHEVWSMIVPPDE 450

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA;ISA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;ISA

GO:0005524 "ATP binding" evidence=IEA

GO:0070328 "triglyceride homeostasis" evidence=IMP

GO:0004595 "pantetheine-phosphate adenylyltransferase activity" evidence=ISA

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

WB|WBGene00022031 Y65B4A.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 90/212 (42%), Positives = 131/212 (61%)

Query:     2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
             ++VS ET  G   VN+ R    +  LDV+ V L+  +G  +  +E K+SSS+ R  +LG 
Sbjct:   193 IVVSRETIKGADAVNKKRNEQGMSQLDVIIVELV--EGSDEILKETKISSSSRRREDLGH 250

Query:    62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRG 120
             L +P +  P  +  PYIIGL GGIASGKS I KYL ET    +I+CD+L H  Y+ G+  
Sbjct:   251 LLRPARAVPRETGAPYIIGLAGGIASGKSHIGKYLRETHNFDVIDCDKLAHTCYERGSSL 310

Query:   121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES 180
             N+ + E FG D+ + DG +DR+KLG IVFS+K ++ +L++ +WP +  +  E I + S +
Sbjct:   311 NRKIGEHFGGDVVV-DGVVDRRKLGTIVFSDKVKLRELSELVWPEVKEKAME-IVKKSTA 368

Query:   181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212
              KV+VIEAA L+ A W   + E W  F+P  E
Sbjct:   369 -KVVVIEAAALIEAGWHKTLAETWTVFVPADE 399

GO:0004140 "dephospho-CoA kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q49YB9	COAE_STAS1	2, ., 7, ., 1, ., 2, 4	0.3529	0.6320	0.6504	yes	N/A
Q3SGD0	COAE_THIDA	2, ., 7, ., 1, ., 2, 4	0.3851	0.6320	0.6633	yes	N/A
Q3MGH8	COAE_ANAVT	2, ., 7, ., 1, ., 2, 4	0.3455	0.6273	0.6785	yes	N/A
Q92BF2	COAE_LISIN	2, ., 7, ., 1, ., 2, 4	0.3405	0.6226	0.66	yes	N/A
Q39R83	COAE_GEOMG	2, ., 7, ., 1, ., 2, 4	0.4469	0.6084	0.6417	yes	N/A
Q3Z6W5	COAE_DEHE1	2, ., 7, ., 1, ., 2, 4	0.3857	0.6037	0.6464	yes	N/A
P63830	COAE_STAAM	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
P63831	COAE_STAAN	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
P63832	COAE_STAAW	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
Q74IB6	COAE_LACJO	2, ., 7, ., 1, ., 2, 4	0.3455	0.6320	0.6767	yes	N/A
Q3ABL6	COAE_CARHZ	2, ., 7, ., 1, ., 2, 4	0.4191	0.6367	0.6553	yes	N/A
Q2Y748	COAE_NITMU	2, ., 7, ., 1, ., 2, 4	0.3157	0.6226	0.66	yes	N/A
Q74FU2	COAE_GEOSL	2, ., 7, ., 1, ., 2, 4	0.4370	0.6320	0.6802	yes	N/A
Q3ZYN7	COAE_DEHSC	2, ., 7, ., 1, ., 2, 4	0.3714	0.6037	0.6464	yes	N/A
Q6G8N8	COAE_STAAS	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
Q65G95	COAE_BACLD	2, ., 7, ., 1, ., 2, 4	0.3333	0.6132	0.6467	yes	N/A
Q5WEG9	COAE_BACSK	2, ., 7, ., 1, ., 2, 4	0.3358	0.6179	0.6649	yes	N/A
Q9HVP8	COAE_PSEAE	2, ., 7, ., 1, ., 2, 4	0.3308	0.6320	0.6600	yes	N/A
O34932	COAE_BACSU	2, ., 7, ., 1, ., 2, 4	0.3617	0.6320	0.6802	yes	N/A
P0DA45	COAE_STRPQ	2, ., 7, ., 1, ., 2, 4	0.3768	0.6132	0.6598	yes	N/A
Q8RBE5	COAE_THETN	2, ., 7, ., 1, ., 2, 4	0.3893	0.6179	0.6517	yes	N/A
Q5N2P0	COAE_SYNP6	2, ., 7, ., 1, ., 2, 4	0.4015	0.6132	0.6220	yes	N/A
Q2RHF1	COAE_MOOTA	2, ., 7, ., 1, ., 2, 4	0.3629	0.6273	0.6273	yes	N/A
Q8CS70	COAE_STAES	2, ., 7, ., 1, ., 2, 4	0.3157	0.6273	0.6551	yes	N/A
Q2YTA2	COAE_STAAB	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
Q31RL4	COAE_SYNE7	2, ., 7, ., 1, ., 2, 4	0.4015	0.6132	0.6220	yes	N/A
Q4L730	COAE_STAHJ	2, ., 7, ., 1, ., 2, 4	0.3185	0.6367	0.6683	yes	N/A
Q9K857	COAE_BACHD	2, ., 7, ., 1, ., 2, 4	0.3259	0.6320	0.6666	yes	N/A
Q2ILC5	COAE_ANADE	2, ., 7, ., 1, ., 2, 4	0.3358	0.6273	0.6303	yes	N/A
Q5HF85	COAE_STAAC	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A
Q5HNL6	COAE_STAEQ	2, ., 7, ., 1, ., 2, 4	0.3157	0.6273	0.6551	yes	N/A
Q6GG18	COAE_STAAR	2, ., 7, ., 1, ., 2, 4	0.3111	0.6367	0.6521	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.24	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	212
cd02022	179	cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK,	7e-48
PRK00081	194	PRK00081, coaE, dephospho-CoA kinase; Reviewed	6e-45
COG0237	201	COG0237, CoaE, Dephospho-CoA kinase [Coenzyme meta	4e-32
pfam01121	179	pfam01121, CoaE, Dephospho-CoA kinase	2e-30
PRK14730	195	PRK14730, coaE, dephospho-CoA kinase; Provisional	2e-29
TIGR00152	188	TIGR00152, TIGR00152, dephospho-CoA kinase	2e-28
PLN02422	232	PLN02422, PLN02422, dephospho-CoA kinase	3e-24
PRK03333	395	PRK03333, coaE, dephospho-CoA kinase/protein foldi	1e-21
PRK14731	208	PRK14731, coaE, dephospho-CoA kinase; Provisional	1e-17
PRK14734	200	PRK14734, coaE, dephospho-CoA kinase; Provisional	4e-15
PRK14732	196	PRK14732, coaE, dephospho-CoA kinase; Provisional	6e-14
cd02164	143	cd02164, PPAT_CoAS, phosphopantetheine adenylyltra	1e-09
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	1e-07
PRK14733	204	PRK14733, coaE, dephospho-CoA kinase; Provisional	2e-06
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	3e-06
PTZ00451	244	PTZ00451, PTZ00451, dephospho-CoA kinase; Provisio	9e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	4e-04
PRK05439	311	PRK05439, PRK05439, pantothenate kinase; Provision	6e-04
PRK08356	195	PRK08356, PRK08356, hypothetical protein; Provisio	0.001
PLN02388	177	PLN02388, PLN02388, phosphopantetheine adenylyltra	0.002
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	0.003

>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2

 Score =  154 bits (392), Expect = 7e-48
 Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           IIGLTGGI SGKST+AK L+ LG  +I+ D++ H  Y+ G    Q + E FG DI L DG
Sbjct: 1   IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDG 60

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ 197
            +DRKKLG IVF++ ++  KL     PLI  +++E++A      KV+V++  +L     +
Sbjct: 61  ELDRKKLGEIVFADPEKRKKLEAITHPLIRKEIEEQLAEA-RKEKVVVLDIPLLFETGLE 119

Query: 198 DQVHEIWVTFIPEQE 212
             V  + V   P + 
Sbjct: 120 KLVDRVIVVDAPPEI 134

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis. Length = 179

>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed

 Score =  147 bits (374), Expect = 6e-45
 Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 1/136 (0%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
             IIGLTGGI SGKST+A     LGA +I+ D + H   + G    Q + E FG +I   
Sbjct: 2   MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDA 61

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           DG +DR KL  +VFS+ +   KL   + PLI  ++ E++    ES   +V++  +L    
Sbjct: 62  DGELDRAKLRELVFSDPEARKKLEAILHPLIREEILEQLQEA-ESSPYVVLDIPLLFENG 120

Query: 196 WQDQVHEIWVTFIPEQ 211
            +  V  + V   P +
Sbjct: 121 LEKLVDRVLVVDAPPE 136

Length = 194

>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]

 Score =  115 bits (289), Expect = 4e-32
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
             IIGLTGGI SGKST+AK L  LG  +I+ D +     + G    Q + E FG +I   
Sbjct: 2   MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDE 61

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           DG +DR+KL   VF++ +   KL + + PLI A++K  I         +V+E  +L  A 
Sbjct: 62  DGGLDRRKLREKVFNDPEARLKLEKILHPLIRAEIKVVIDGARS--PYVVLEIPLLFEAG 119

Query: 196 WQDQVHEIWVTFIPEQ 211
            +    ++ V + P +
Sbjct: 120 GEKYFDKVIVVYAPPE 135

Length = 201

>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase

 Score =  109 bits (275), Expect = 2e-30
 Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 2/136 (1%)

Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
            I+GLTGGI SGKST+A     LG  +++ D +  +  + G+     + + FG DI L D
Sbjct: 1   LIVGLTGGIGSGKSTVANLFADLGVPIVDADVIARQVVEPGSPALAAIVDHFGPDILLAD 60

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
           G +DR+ L  +VFS+ +E   LN  + PLI  ++ +++A+L  +   ++++  +L  +  
Sbjct: 61  GQLDRRALRELVFSDPEEKQWLNAILHPLIRREMFKQLAQL--TSPYVLLDVPLLFESGL 118

Query: 197 QDQVHEIWVTFIPEQE 212
               H + V   P + 
Sbjct: 119 TKLCHRVLVVDAPVEL 134

This family catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction. Length = 179

>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional

 Score =  107 bits (270), Expect = 2e-29
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 78  IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
            IGLTGGIASGKST+  YL    G  +++ D     A   G+   + + + +G  I  PD
Sbjct: 3   RIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPD 62

Query: 137 G-SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           G  ++RK LG I+F++ +E   L   I P +  + +EE+A+L  S+ ++V+   +L  AK
Sbjct: 63  GSELNRKALGEIIFNDPEERRWLENLIHPYVRERFEEELAQLK-SNPIVVLVIPLLFEAK 121

Query: 196 WQDQVHEIWV 205
             D   EIWV
Sbjct: 122 LTDLCSEIWV 131

Length = 195

>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase

 Score =  105 bits (263), Expect = 2e-28
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGA-GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           IIGLTGGI SGKST+A YL       +I+ D++ H+  + G+   + + + FG  I   D
Sbjct: 1   IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNED 60

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
           G +DRK LG  VF++ +E+  LN  + PLI   +K+ +A+       ++++  +L   K 
Sbjct: 61  GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKL 120

Query: 197 QDQVHEIWV 205
           +     + V
Sbjct: 121 RSLCDRVIV 129

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 188

>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase

 Score = 95.2 bits (237), Expect = 3e-24
 Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           ++GLTGGIASGKST++   ++ G  +++ D++       G+ G + V   FGEDI LPDG
Sbjct: 3   VVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDG 62

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAK- 195
            +DR+KLG IVFS+  +   LN+ + P I + +  EI +L     KVIV++  +L   K 
Sbjct: 63  EVDREKLGQIVFSDPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKM 122

Query: 196 --WQDQVHEIWVTFIPEQE 212
             W   V  +WV   PE +
Sbjct: 123 DKWTKPVVVVWVD--PETQ 139

Length = 232

>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

 Score = 91.2 bits (227), Expect = 1e-21
 Identities = 41/97 (42%), Positives = 57/97 (58%)

Query: 79  IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGS 138
           IGLTGGI +GKST+A  L  LGA +++ D L     + GT G   +   FG+DI L DG+
Sbjct: 4   IGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGA 63

Query: 139 IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIA 175
           +DR  L A  F++ +    LN  + PL+ A+  E IA
Sbjct: 64  LDRPALAAKAFADDEARAVLNGIVHPLVGARRAELIA 100

Length = 395

>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 40/131 (30%), Positives = 76/131 (58%), Gaps = 11/131 (8%)

Query: 72  LSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVV---RELF 128
           +   P+++G+TGGI SGKST+ ++L  +G  L   D++   A ++     +V+   ++LF
Sbjct: 1   MRSLPFLVGVTGGIGSGKSTVCRFLAEMGCELFEADRV---AKELQVTDPEVIEGIKKLF 57

Query: 129 GEDIALPDGS----IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SESHKV 183
           G+D+   D S    +DRK++  +VFS+ +++  LN+ I P + A  +  + R      ++
Sbjct: 58  GKDVYSKDASGKLLLDRKRIAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRI 117

Query: 184 IVIEAAVLLSA 194
           +V EAA+L  +
Sbjct: 118 LVKEAAILFES 128

Length = 208

>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional

 Score = 70.6 bits (173), Expect = 4e-15
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 79  IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVREL---FGEDIALP 135
           IGLTGGI SGKST+A  L + G  +++ DQ+   A D+   G   + EL   FG+DI  P
Sbjct: 4   IGLTGGIGSGKSTVADLLSSEGFLIVDADQV---ARDIVEPGQPALAELAEAFGDDILNP 60

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSA 194
           DG++DR  L A  F++ ++   LN    P I  +             KV V +  +L+  
Sbjct: 61  DGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK 120

Query: 195 KWQDQVHEIWVTFIPEQE 212
               ++  + V  +  +E
Sbjct: 121 GLDRKMDLVVVVDVDVEE 138

Length = 200

>gnl|CDD|237807 PRK14732, coaE, dephospho-CoA kinase; Provisional

 Score = 67.3 bits (164), Expect = 6e-14
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           +IG+TG I  GKST  K LE LGA  I+ D+L  R  +  +     +  L G  I   +G
Sbjct: 1   LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENG 60

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192
             +RKK+  IVF++++++  LN+ I PL+     ++I + +   K+++ E  +L 
Sbjct: 61  KPNRKKISEIVFNDEEKLKALNELIHPLVRKDF-QKILQTTAEGKLVIWEVPLLF 114

Length = 196

>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLR 55
           ++VS ET  G +K+N  R  N L PL++V VPL+ +D      + +K+SS+ +R
Sbjct: 93  IVVSPETYPGALKINRKREENGLSPLEIVVVPLVKADE-----DGEKISSTRIR 141

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD. Length = 143

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 11/68 (16%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPS-DGKVDEQEEDKLSSSNLRMREL- 59
           ++VS ET  G +K+NE+R    LKPL++V +  + + DGK        +SS+ +R  E+ 
Sbjct: 92  IVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAEDGK-------PISSTRIRRGEID 144

Query: 60  --GTLRKP 65
             G L K 
Sbjct: 145 EHGNLIKE 152

Length = 153

>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 77  YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVR---ELFGEDI 132
           Y IG+TGGIASGKST  + L E L   ++  D +        T+   V++   E FG++I
Sbjct: 7   YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREI----TKKPSVIKKIAEKFGDEI 62

Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186
            + +  I+R  L AI+  +K+    L   + P+I  ++K+++    ES  V+ I
Sbjct: 63  VM-NKQINRAMLRAIITESKEAKKWLEDYLHPVINKEIKKQV---KESDTVMTI 112

Length = 204

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLR---MRE 58
           ++VS ET  G +K+NE+R    L PL+++ +        V  ++   +SS+ +R   + E
Sbjct: 96  IVVSPETYPGALKINEIREKRGLPPLEIIVIDY------VLAEDGKPISSTRIRRGEIDE 149

Query: 59  LGTLRKPVQ 67
            G + KP  
Sbjct: 150 EGKIIKPRN 158

Length = 158

>gnl|CDD|185630 PTZ00451, PTZ00451, dephospho-CoA kinase; Provisional

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 37/142 (26%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP-- 135
           +IGLTGGIA GKST+++ L          ++      D     + VVREL   ++A    
Sbjct: 3   LIGLTGGIACGKSTVSRILR---------EEHHIEVID----ADLVVRELQAPNMACTRK 49

Query: 136 ------------DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL------ 177
                        G ++R +LG I+FS+      L + + P I   + + IA        
Sbjct: 50  IAARWPLCVHPETGELNRAELGKIIFSDAQARRALGRIMNPPIFRAILKRIAAAWWEDLW 109

Query: 178 ----SESHKVIVIEAAVLLSAK 195
                 S  ++V++A  L   K
Sbjct: 110 RSGAGSSPLIVVLDAPTLFETK 131

Length = 244

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 78  IIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
           II +TG   SGKST+AK L E LG  +I+ D L
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDL 33

Length = 114

>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETL 99
           P+IIG+ G +A GKST A+ L+ L
Sbjct: 86  PFIIGIAGSVAVGKSTTARLLQAL 109

Length = 311

>gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 22/87 (25%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINC-----DQLGHRAYDVG-----------TRGN 121
           I+G+ G IA+GK+T+AK+ E  G   ++C     D L H   D             TR N
Sbjct: 7   IVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTREN 66

Query: 122 -----QVVRELFGEDIALPDGSIDRKK 143
                + ++E +GEDI L   ++D+K+
Sbjct: 67  LIELGRYLKEKYGEDI-LIRLAVDKKR 92

Length = 195

>gnl|CDD|215218 PLN02388, PLN02388, phosphopantetheine adenylyltransferase

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
           ++VS ET  GG+ VN+ R    L  L +  V ++P     +E   +KLSS+ LR  E   
Sbjct: 113 IVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVP-----EESTGNKLSSTTLRRLEAEK 167

Query: 62  LRKPVQP 68
             K  QP
Sbjct: 168 AVKQKQP 174

Length = 177

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRE 58
           ++VS ET    +K+NE+R+ N L PL +V VP + +        ED    S+ R+  
Sbjct: 89  IVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLA--------EDLFPISSTRIIN 137

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.97
KOG3220|consensus	225		99.97
PLN02422	232	dephospho-CoA kinase	99.96
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.96
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.96
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.96
PTZ00451	244	dephospho-CoA kinase; Provisional	99.96
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.96
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.95
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.95
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.95
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.95
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.94
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.93
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.7
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.66
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.63
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.62
COG1019	158	Predicted nucleotidyltransferase [General function	99.61
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.6
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.58
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.55
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.54
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.54
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.53
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.53
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.51
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.51
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.5
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.5
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.49
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.49
PLN02388	177	phosphopantetheine adenylyltransferase	99.49
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.48
PRK07667	193	uridine kinase; Provisional	99.48
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.48
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.44
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.44
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.44
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.44
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.44
cd03246	173	ABCC_Protease_Secretion This family represents the	99.41
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.41
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.41
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.41
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.41
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.4
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.4
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.4
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.4
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.39
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.39
PRK06696	223	uridine kinase; Validated	99.39
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.39
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.39
COG1123	539	ATPase components of various ABC-type transport sy	99.39
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.39
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.39
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.38
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.38
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.38
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.38
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.38
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.38
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.38
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.37
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.37
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.37
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.37
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.36
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.36
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.36
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.36
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.36
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.36
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.36
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.35
PRK05480	209	uridine/cytidine kinase; Provisional	99.35
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.35
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.35
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.35
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.35
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.35
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.35
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.34
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.34
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.34
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.34
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.34
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.34
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.34
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.34
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.34
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.33
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.33
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.33
PRK10938	490	putative molybdenum transport ATP-binding protein	99.33
COG4987	573	CydC ABC-type transport system involved in cytochr	99.33
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.33
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.33
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.32
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.32
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.32
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.32
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.32
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.32
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.32
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.32
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.32
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.31
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.31
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.31
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.31
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.31
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.3
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.3
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.3
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.3
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.3
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.3
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.29
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.29
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.29
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.29
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.29
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.29
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.29
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.29
PRK10908	222	cell division protein FtsE; Provisional	99.29
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.28
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.28
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.28
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.28
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.28
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.28
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.28
PRK07429	327	phosphoribulokinase; Provisional	99.28
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.28
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.28
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.28
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.28
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.28
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.28
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.27
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.27
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.27
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.27
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.27
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.27
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.27
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.27
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.26
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.26
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.26
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.26
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.26
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.26
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.26
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.26
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.25
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.25
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.25
COG1123	539	ATPase components of various ABC-type transport sy	99.25
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.25
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.25
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.25
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.24
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.24
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.24
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.24
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.24
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.23
KOG0055|consensus	1228		99.23
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.23
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.23
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.23
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.23
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.23
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.23
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.23
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.22
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.22
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.22
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.22
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.22
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.22
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.22
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.22
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.22
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.22
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.22
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.22
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.22
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.22
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.21
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.21
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.21
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.21
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.21
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.2
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.2
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.2
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.2
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.2
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.2
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.2
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.2
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.2
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.2
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.2
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.2
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.19
KOG0057|consensus	591		99.19
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.19
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.19
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.19
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.19
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.19
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.19
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.19
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.19
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.19
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.18
PTZ00301	210	uridine kinase; Provisional	99.18
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.18
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.18
PRK13409	590	putative ATPase RIL; Provisional	99.18
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.18
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.18
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.18
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.18
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.18
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.18
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.18
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.18
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.18
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.18
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.18
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.18
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.18
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.17
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.17
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.17
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.17
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.17
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.17
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.16
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.16
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.16
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.16
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.16
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.16
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.16
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.16
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.16
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.16
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.15
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.15
COG4172	534	ABC-type uncharacterized transport system, duplica	99.15
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.15
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.15
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.15
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.15
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.14
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.14
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.14
COG4988	559	CydD ABC-type transport system involved in cytochr	99.14
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.14
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.14
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.14
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.14
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.14
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.14
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.14
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.14
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.14
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.14
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.13
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.13
PRK13409	590	putative ATPase RIL; Provisional	99.13
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.13
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.13
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.13
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.13
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.13
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.12
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.12
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.12
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.12
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK11147	635	ABC transporter ATPase component; Reviewed	99.12
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.12
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.11
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.11
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.1
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.1
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.1
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.1
KOG0058|consensus	716		99.09
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.09
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.08
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.08
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.07
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.07
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.07
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.07
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.07
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.07
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.07
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.07
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.06
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.06
PRK10938	490	putative molybdenum transport ATP-binding protein	99.06
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.06
KOG0055|consensus	1228		99.05
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.05
PLN02348	395	phosphoribulokinase	99.05
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.05
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.05
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.04
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.04
PLN03211	659	ABC transporter G-25; Provisional	99.04
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.03
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.03
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.03
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.03
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.03
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.03
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.02
PRK11147	635	ABC transporter ATPase component; Reviewed	99.01
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.01
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.0
PLN03073	718	ABC transporter F family; Provisional	98.99
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.99
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.99
PRK05439	311	pantothenate kinase; Provisional	98.98
COG4559	259	ABC-type hemin transport system, ATPase component	98.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.98
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.98
PLN03073	718	ABC transporter F family; Provisional	98.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.97
KOG0059|consensus	885		98.97
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.96
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.96
PLN03232	1495	ABC transporter C family member; Provisional	98.95
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.95
COG0488	530	Uup ATPase components of ABC transporters with dup	98.95
COG0488	530	Uup ATPase components of ABC transporters with dup	98.95
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.94
PLN03130	1622	ABC transporter C family member; Provisional	98.94
PRK01184	184	hypothetical protein; Provisional	98.94
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.93
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.92
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.91
PTZ00243	1560	ABC transporter; Provisional	98.91
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.9
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.9
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.89
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.88
PLN02318	656	phosphoribulokinase/uridine kinase	98.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.88
KOG0056|consensus	790		98.88
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.87
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.86
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.85
PRK08233	182	hypothetical protein; Provisional	98.83
COG4172	534	ABC-type uncharacterized transport system, duplica	98.83
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.82
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.82
COG4181	228	Predicted ABC-type transport system involved in ly	98.79
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.78
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.77
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.77
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.75
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.73
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.71
PRK04182	180	cytidylate kinase; Provisional	98.7
PLN03232	1495	ABC transporter C family member; Provisional	98.7
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.7
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.69
PLN03140	1470	ABC transporter G family member; Provisional	98.69
PRK06547	172	hypothetical protein; Provisional	98.66
PLN03140	1470	ABC transporter G family member; Provisional	98.66
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.65
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.64
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.63
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.63
PLN03130	1622	ABC transporter C family member; Provisional	98.63
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.62
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.62
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.62
PTZ00243	1560	ABC transporter; Provisional	98.61
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.61
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.61
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.58
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.56
KOG0061|consensus	613		98.56
PRK04040	188	adenylate kinase; Provisional	98.56
PRK15453	290	phosphoribulokinase; Provisional	98.55
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.55
PLN02200	234	adenylate kinase family protein	98.54
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.53
PRK13946	184	shikimate kinase; Provisional	98.53
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.53
PRK00131	175	aroK shikimate kinase; Reviewed	98.52
KOG0062|consensus	582		98.5
KOG0054|consensus	1381		98.5
KOG0927|consensus	614		98.5
KOG3308|consensus	225		98.49
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.48
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.46
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.44
PRK03731	171	aroL shikimate kinase II; Reviewed	98.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.43
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.4
PRK05057	172	aroK shikimate kinase I; Reviewed	98.4
PRK00023	225	cmk cytidylate kinase; Provisional	98.4
PRK06217	183	hypothetical protein; Validated	98.39
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.39
KOG0054|consensus	1381		98.38
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.34
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.34
COG4178	604	ABC-type uncharacterized transport system, permeas	98.33
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.32
PRK08118	167	topology modulation protein; Reviewed	98.32
KOG0927|consensus	614		98.3
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.3
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.29
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.29
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.28
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.28
PRK09825	176	idnK D-gluconate kinase; Provisional	98.28
KOG2702|consensus	323		98.26
PRK13948	182	shikimate kinase; Provisional	98.26
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.24
PRK07261	171	topology modulation protein; Provisional	98.23
PRK06762	166	hypothetical protein; Provisional	98.22
PRK13949	169	shikimate kinase; Provisional	98.22
PLN02199	303	shikimate kinase	98.21
PRK03839	180	putative kinase; Provisional	98.21
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.19
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.18
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.18
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.16
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.15
PRK03846	198	adenylylsulfate kinase; Provisional	98.14
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.14
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.13
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.12
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.12
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.11
PRK08356	195	hypothetical protein; Provisional	98.11
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.1
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.1
PRK14530	215	adenylate kinase; Provisional	98.1
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.09
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.08
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.07
PRK14527	191	adenylate kinase; Provisional	98.07
KOG3347|consensus	176		98.07
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.07
PRK13947	171	shikimate kinase; Provisional	98.06
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.05
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.04
PRK14532	188	adenylate kinase; Provisional	98.04
KOG3354|consensus	191		98.03
PRK00625	173	shikimate kinase; Provisional	98.03
PRK00300	205	gmk guanylate kinase; Provisional	98.02
PRK02496	184	adk adenylate kinase; Provisional	98.01
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.01
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.0
KOG0064|consensus	728		98.0
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.0
PTZ00088	229	adenylate kinase 1; Provisional	97.99
PRK00889	175	adenylylsulfate kinase; Provisional	97.98
PRK14531	183	adenylate kinase; Provisional	97.97
KOG0635|consensus	207		97.97

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.97  E-value=1.9e-31  Score=211.18  Aligned_cols=134  Identities=43%  Similarity=0.728  Sum_probs=122.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN  156 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~  156 (212)
                      ++|||||+.||||||++++|..+|++++++|.++|++|.++...+..+.+.||.++++.+|.+||+.|+.++|+||..+.
T Consensus         1 ~iIglTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~   80 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK   80 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+++++||.+...+..++..... .+++++|.|+|+|.+|..+||.+|+|+||++
T Consensus        81 ~L~~iihP~I~~~~~~~~~~~~~-~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e  134 (180)
T PF01121_consen   81 KLENIIHPLIREEIEKFIKRNKS-EKVVVVEIPLLFESGLEKLCDEVIVVYAPEE  134 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHS-TSEEEEE-TTTTTTTGGGGSSEEEEEE--HH
T ss_pred             HHHHHHhHHHHHHHHHHHHhccC-CCEEEEEcchhhhhhHhhhhceEEEEECCHH
Confidence            99999999999999999887542 3899999999999999999999999999975

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>KOG3220|consensus

Probab=99.97  E-value=2.1e-30  Score=203.54  Aligned_cols=137  Identities=36%  Similarity=0.545  Sum_probs=131.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      ++++||+|++||||||+++.+.++|++++|+|.++|+.+.|+.+.+..+.+.||.+++..+|.+||..|++.+|+||+.+
T Consensus         1 M~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             CeEEEeecccccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      ..++.++||.++.++...+..+. .+++++++|.|+|+|++|.++|+.+|+|.||+++
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~  138 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEEL  138 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHH
Confidence            99999999999999988876665 8999999999999999999999999999999873

>PLN02422 dephospho-CoA kinase

Probab=99.96  E-value=1.6e-29  Score=206.82  Aligned_cols=135  Identities=36%  Similarity=0.605  Sum_probs=126.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN  156 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~  156 (212)
                      .+|||+|++||||||++++|..+|++++|+|.++|++|.++...+..+.+.||.+++..+|.+||+.|+..+|+||..+.
T Consensus         2 ~~igltG~igsGKstv~~~l~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            47999999999999999999999999999999999999999889999999999999988999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ++++++||.+...+...+.+.. .+.+++++|.|+|+|++|.++||.+|+|+||++
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e  137 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPE  137 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHH
Confidence            9999999999999977775543 345799999999999999999999999999976

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.96  E-value=4.4e-29  Score=200.33  Aligned_cols=133  Identities=28%  Similarity=0.388  Sum_probs=124.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNK  157 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~  157 (212)
                      ++||+|++||||||++++|.++|+.++++|.++|++|.++...++.+.+.||..++..+|.+||..|+..+|+||..+.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~   80 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA   80 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +++++||.+.+++...+.... ..+++++|.|+|+|++|..+||.+|+|+||++
T Consensus        81 L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e  133 (196)
T PRK14732         81 LNELIHPLVRKDFQKILQTTA-EGKLVIWEVPLLFETDAYTLCDATVTVDSDPE  133 (196)
T ss_pred             HHHHhhHHHHHHHHHHHHHHh-cCCcEEEEeeeeeEcCchhhCCEEEEEECCHH
Confidence            999999999999988887653 34689999999999999999999999999976

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.96  E-value=6.4e-29  Score=199.22  Aligned_cols=135  Identities=35%  Similarity=0.571  Sum_probs=126.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      +.+|||+|++||||||+++.|..+|++++++|.+.|++|.++...+..+...||..++..+|.++|+.|+..+|+++..+
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            57899999999999999999999999999999999999999988999999999999988789999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .++++++||.+.+++...+.... ...++++|+|+|+|.+|.++||.+|+|+||++
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~-~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e  136 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAE-SSPYVVLDIPLLFENGLEKLVDRVLVVDAPPE  136 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc-cCCEEEEEehHhhcCCchhhCCeEEEEECCHH
Confidence            99999999999999988887653 23799999999999999999999999999975

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.96  E-value=2.5e-28  Score=196.69  Aligned_cols=137  Identities=30%  Similarity=0.449  Sum_probs=127.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      +.+|||+|++||||||+++.|+.+|++++++|.++|++|.++...+..+.+.||..++..+|.+||+.|+..+|.|+..+
T Consensus         1 m~~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            35899999999999999999999999999999999999999988999999999999998899999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      .++++++||.+...+..++.... .+..+++++.|+|+|.+|.++||.+|+|+||+++
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~  138 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEE  138 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHH
Confidence            99999999999999988876654 4457999999999999999999999999999763

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.96  E-value=1.8e-28  Score=202.31  Aligned_cols=136  Identities=26%  Similarity=0.358  Sum_probs=122.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDE  154 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~  154 (212)
                      +.+|||||++||||||++++|.. +|++++|+|.++|++|.++...++.+.+.||..++..+|.+||..|+..+|+||..
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA   80 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence            46899999999999999999997 69999999999999999999999999999999998778999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhh---------c-CCCcEEEEEecccccccc-ccccCeEEEEEeCCC
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARL---------S-ESHKVIVIEAAVLLSAKW-QDQVHEIWVTFIPEQ  211 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~---------~-~~~~~vvie~~~l~e~~~-~~~~d~v~~v~~~~~  211 (212)
                      ++++++++||.+..++...+.+.         . .+..++++|+|+|+|+++ ..+||.+|+|.||++
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e  148 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEE  148 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHH
Confidence            99999999999999987777532         1 223599999999999985 468999999999976

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.96  E-value=1.9e-28  Score=196.67  Aligned_cols=134  Identities=36%  Similarity=0.605  Sum_probs=125.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCC-ccchHhHHHHhcCChHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL-GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG-SIDRKKLGAIVFSNKDE  154 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r~~l~~~vf~~~~~  154 (212)
                      .+|||+|++||||||+++.|..+ |++++++|.+.|++|.++...+..+...||..++..+| .+||+.|+..+|.|+..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            47999999999999999999987 99999999999999999999999999999999998889 89999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +.++++++||.+.+.+...+.+. ....++++|.|+|+|.+|.++||.+|+|+||++
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~-~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e  137 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQL-KSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPE  137 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEeHHhcCcchHhCCCEEEEEECCHH
Confidence            99999999999999998888664 245799999999999999999999999999976

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.95  E-value=5.9e-28  Score=195.62  Aligned_cols=138  Identities=29%  Similarity=0.571  Sum_probs=126.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCC--Cc--cchHhHHHHhc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD--GS--IDRKKLGAIVF  149 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~--~~r~~l~~~vf  149 (212)
                      +.+++|||+|++||||||++++|.++|++++++|.++|++|.++...+.++...||.+++..+  +.  ++|+.|+.++|
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            446899999999999999999999999999999999999999998888999999999998543  43  89999999999


Q ss_pred             CChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        150 SNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ++|..+.++++++||.+..++...+.... .+..++++|+|+|+|++|...||.+|+|+||++
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e  145 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTE  145 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHH
Confidence            99999999999999999999998887665 455799999999999999999999999999976

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.95  E-value=7.2e-28  Score=193.88  Aligned_cols=134  Identities=25%  Similarity=0.405  Sum_probs=122.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~  152 (212)
                      ..+++|||+|++||||||++++|.. +|++++++|.+.|++|.+ ...+..+.+.||.+++. +|.+||..|+..+|+|+
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~   81 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK   81 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence            4578999999999999999999985 899999999999999987 55788999999999986 78999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccccc--ccccCeEEEEEeCCC
Q psy17138        153 DEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW--QDQVHEIWVTFIPEQ  211 (212)
Q Consensus       153 ~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~--~~~~d~v~~v~~~~~  211 (212)
                      ..+.++++++||.+.+++.+++.+.  +..++++|.|+|+|.+|  ..+||.+|+|+||++
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~~~--~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e  140 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVKES--DTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLE  140 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhc--CCCeEEEEechhhhccCchhhhCCEEEEEECCHH
Confidence            9999999999999999998888653  44699999999999986  579999999999976

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.95  E-value=9.6e-28  Score=190.04  Aligned_cols=133  Identities=41%  Similarity=0.693  Sum_probs=124.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNK  157 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~  157 (212)
                      +|||+|++||||||+++.|+.+|++++++|.+.|++|.++...+..+...||..++..+|.++|..|+..+|+++..+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~   80 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK   80 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHH
Confidence            48999999999999999999999999999999999999998899999999999998888999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +++++||.+..++...+.... ...++++|+|+|+|.+|..+||.+|+|+||++
T Consensus        81 l~~i~hp~i~~~~~~~~~~~~-~~~~vive~plL~e~~~~~~~D~vv~V~a~~~  133 (179)
T cd02022          81 LEAITHPLIRKEIEEQLAEAR-KEKVVVLDIPLLFETGLEKLVDRVIVVDAPPE  133 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-CCCEEEEEehHhhcCCcHHhCCeEEEEECCHH
Confidence            999999999999988887643 34699999999999999999999999999975

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.95  E-value=3.7e-27  Score=189.27  Aligned_cols=134  Identities=36%  Similarity=0.549  Sum_probs=122.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      +.+|||||++||||||+++++..+|++++++|.+.|++|.++...+..+...||.++.+.+|.++|+.|+..+|+|+..+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~   81 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR   81 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHH
Confidence            67999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .++++++||.+++++. ...+.... .++++|.|+|+|.+...+||+||+|+||++
T Consensus        82 ~~Le~i~hPli~~~~~-~~~~~~~~-~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e  135 (201)
T COG0237          82 LKLEKILHPLIRAEIK-VVIDGARS-PYVVLEIPLLFEAGGEKYFDKVIVVYAPPE  135 (201)
T ss_pred             HHHHHhhhHHHHHHHH-HHHHHhhC-CceEEEchHHHhccccccCCEEEEEECCHH
Confidence            9999999999999987 43333222 299999999999977778999999999976

>TIGR00152 dephospho-CoA kinase

Probab=99.94  E-value=4.5e-27  Score=187.46  Aligned_cols=134  Identities=33%  Similarity=0.553  Sum_probs=124.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcC-CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLG-AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN  156 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg-~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~  156 (212)
                      +|||+|++||||||+++.|+.+| ++++++|.+.|++|.++...+..+...||..++..+|.++|..|+..+|+||..+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            48999999999999999999886 99999999999999999889999999999999888899999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ++++++||.+.+++.+.+.+......++++++|++++.++..+||.+|+|++|++
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~  135 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQ  135 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHH
Confidence            9999999999999999987765334699999999999889999999999999975

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=197.76  Aligned_cols=135  Identities=34%  Similarity=0.486  Sum_probs=125.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      +.+|||||++||||||++++|+.+|++++|+|.++|++|.++...+..+.+.||..+++.+|.+||+.|+..+|.|+..+
T Consensus         1 m~~IgltG~igsGKStv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            35799999999999999999999999999999999999999988899999999999998899999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .++++++||.+...+.+.+... .+..+++++.++|+|.+|..+||.+|+|++|.+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e  135 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESGMAPLFHLVVVVDADVE  135 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCCchhhCCEEEEEECCHH
Confidence            9999999999999998877654 345688889999999999999999999999975

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.70  E-value=4.1e-17  Score=130.49  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=113.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----------  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----------  112 (212)
                      ++++..++|+    ....++++++...+|+++.|+|||||||||++|+|++|     |...++++.+...          
T Consensus         4 ~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           4 EIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             EEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            4667777776    34788899999999999999999999999999999987     6667776433210          


Q ss_pred             -------cccCCchh----------------------HHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChH--H
Q psy17138        113 -------AYDVGTRG----------------------NQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 -------~~~~~~~~----------------------~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                             .+.|....                      -..+++..|..-       .-+.|+.+|..|++.+--+|+  +
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL  159 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML  159 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence                   01111100                      112222223211       125678899999999999998  6


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ++++++.++|+...++.+.++++....-+.++.+|-|--|  ++.+||++|++-
T Consensus       160 FDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA--r~VadrviFmd~  211 (240)
T COG1126         160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA--REVADRVIFMDQ  211 (240)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH--HHhhheEEEeeC
Confidence            7899999999999999999998885555666668988766  579999999874

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.66  E-value=1e-16  Score=126.98  Aligned_cols=154  Identities=12%  Similarity=0.123  Sum_probs=112.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc----------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA----------  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~----------  113 (212)
                      +.+..++|..   ..+++++++++..+|+++||.|+|||||||++|+|+.|     |...+++-...++.          
T Consensus         4 v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl   80 (245)
T COG4555           4 VTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL   80 (245)
T ss_pred             eeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence            4455666653   55688999999999999999999999999999999987     55555532221111          


Q ss_pred             ------ccCCc--------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        114 ------YDVGT--------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       114 ------~~~~~--------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                            |..-+                    ...+.+.+.|+..-.       -+.|+.+|-.+++.+.+||+  .++++
T Consensus        81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP  160 (245)
T COG4555          81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP  160 (245)
T ss_pred             cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence                  10000                    011222222222110       13467788899999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++-...+.+++++++++...+.+++.+|.|.|.  ..+||+++++-
T Consensus       161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev--ealCDrvivlh  207 (245)
T COG4555         161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV--EALCDRVIVLH  207 (245)
T ss_pred             CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH--HHhhheEEEEe
Confidence            999999999999999999987778999999999875  57999999874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=6.7e-16  Score=126.16  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=111.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~  111 (212)
                      .+++.++.|..    ..+++++++...+|++++|+||||||||||+|++++|     |...+++..+.           +
T Consensus         5 ~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~   80 (248)
T COG1116           5 EIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE   80 (248)
T ss_pred             EEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence            46667777764    5788999999999999999999999999999999997     44444444320           0


Q ss_pred             ccccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        112 RAYDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       112 ~~~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                      ..+.|..                     ......++.+|..-+       -+.|+.+|..|++.+..+|+  +++++-..
T Consensus        81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA  160 (248)
T COG1116          81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA  160 (248)
T ss_pred             CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence            0011110                     123344455554322       25688999999999999998  55777777


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      ++...+..+++.+.++- ...+++++-+|.+.||  --+.||++++..-
T Consensus       161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA--v~LsdRivvl~~~  207 (248)
T COG1116         161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEA--VYLADRVVVLSNR  207 (248)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH--HhhhCEEEEecCC
Confidence            88888888887776664 4456777779999997  3588999988764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.62  E-value=7.4e-16  Score=127.57  Aligned_cols=142  Identities=20%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cccCC------------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AYDVG------------  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~~~~------------  117 (212)
                      ..++++++..++|.+++|+||||||||||+|+|+++     |...+++..+..        . .|.|+            
T Consensus        16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d   95 (258)
T COG1120          16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE   95 (258)
T ss_pred             eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence            456778899999999999999999999999999985     444555433210        0 01111            


Q ss_pred             -----------------ch---hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        118 -----------------TR---GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       118 -----------------~~---~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                       ..   ...+.++..|...+       -++|+.+|..+++.+.|++.  +++++++.++....-
T Consensus        96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~  175 (258)
T COG1120          96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI  175 (258)
T ss_pred             hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHH
Confidence                             00   12223444443322       14578899999999999998  678999999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++++. .....+++..|.+..|  ..+||+++++.
T Consensus       176 evl~ll~~l~~~~~~tvv~vlHDlN~A--~ryad~~i~lk  213 (258)
T COG1120         176 EVLELLRDLNREKGLTVVMVLHDLNLA--ARYADHLILLK  213 (258)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9999998887 5567888889999876  47999999875

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=99.61  E-value=6.6e-16  Score=116.18  Aligned_cols=54  Identities=30%  Similarity=0.563  Sum_probs=50.5

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhhc
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELG   60 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~g   60 (212)
                      +||||+||++||.+||+.|.++||+||+|++|++|. +     .++.++||+++|.....
T Consensus        95 ~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~-a-----edg~~iSSTrIrrgeId  148 (158)
T COG1019          95 AIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVL-A-----EDGKPISSTRIRRGEID  148 (158)
T ss_pred             EEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhh-h-----hcCCccchhhhhhhccC
Confidence            699999999999999999999999999999999998 6     68889999999988653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.60  E-value=1.5e-15  Score=124.23  Aligned_cols=154  Identities=23%  Similarity=0.208  Sum_probs=113.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc--
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA--  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~--  113 (212)
                      +.+++++|.    ..+++++++++...|+++.++|||||||||++|++++|     |...++...+..        .+  
T Consensus         4 ~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           4 FENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             eeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            455667775    44788999999999999999999999999999999987     556665444311        00  


Q ss_pred             ------ccCCc---------------------hhHHHHHHHhCCcc--C-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 ------YDVGT---------------------RGNQVVRELFGEDI--A-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 ------~~~~~---------------------~~~~~~~~~~g~~~--~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                            +.|..                     ....++.+.+|.+-  +       -+.|+.+|--+++.+..+|.  ++
T Consensus        80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM  159 (309)
T COG1125          80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM  159 (309)
T ss_pred             hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence                  11110                     12344555555432  1       14678889999999999998  66


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +++-..++|..+..+++.+.++. .-.+++++.+|.+.||  .++.|++.+++.
T Consensus       160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA--~kLadri~vm~~  211 (309)
T COG1125         160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA--LKLADRIAVMDA  211 (309)
T ss_pred             cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH--HhhhceEEEecC
Confidence            77888899999999999888776 4466777779999997  588999988763

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.58  E-value=2.5e-15  Score=127.75  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=111.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYD  115 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~  115 (212)
                      +.+.+++|..   ...+++++++...+|.++||+|||||||||++|+|.++     |...+++-....        --|.
T Consensus         7 ~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131           7 VRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             ecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence            4455555541   23678889999999999999999999999999999987     333333211100        0111


Q ss_pred             CC----------------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138        116 VG----------------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       116 ~~----------------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                      ++                            ....+.+++.+|..-..       +.|+.+|..++..+..+|+  .++++
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP  163 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP  163 (293)
T ss_pred             ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            11                            11234556666655311       3467778899999999998  56899


Q ss_pred             HhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|..+.++++.++++.. +..+|++.+|.+-+.  ..+||+++++.
T Consensus       164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~--~~~~d~v~il~  211 (293)
T COG1131         164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA--EELCDRVIILN  211 (293)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH--HHhCCEEEEEe
Confidence            999999999999999999874 447999999999886  46799998875

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.55  E-value=3.4e-15  Score=113.92  Aligned_cols=51  Identities=39%  Similarity=0.689  Sum_probs=47.9

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhh
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRM   56 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~   56 (212)
                      |||||+||++||.+||+.|+|+||+||++++|+++. +    ++++.|||||++|.
T Consensus        92 ~lVVS~ET~~~~~~iN~~R~~~gl~pl~i~~v~~v~-~----~~~~~kiSST~iR~  142 (143)
T cd02164          92 AIVVSPETYPGALKINRKREENGLSPLEIVVVPLVK-A----DEDGEKISSTRIRR  142 (143)
T ss_pred             EEEEcHHHhhhHHHHHHHHHHCCCCceeEEEEEeec-c----CCCCCeecchhhhC
Confidence            699999999999999999999999999999999999 4    36899999999985

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=1.5e-14  Score=119.38  Aligned_cols=153  Identities=15%  Similarity=0.067  Sum_probs=110.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------ccccccCC
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------GHRAYDVG  117 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------~~~~~~~~  117 (212)
                      +++.+.+|..   . .+++++++...+|.+++|+||||||||||+|.+.++     |...+....+      .+--|.|+
T Consensus         7 v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ   82 (254)
T COG1121           7 VENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ   82 (254)
T ss_pred             EeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence            5555565531   2 478889999999999999999999999999999995     3333332211      01112222


Q ss_pred             c----------------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        118 T----------------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       118 ~----------------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      .                                  ......++..|..-+       -+.|+.+|..||+++.++|+  +
T Consensus        83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll  162 (254)
T COG1121          83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL  162 (254)
T ss_pred             ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence            1                                  112222333332211       14578899999999999999  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++.....+.+.+.+++...+.|++-+|.+...  .++||+++.+.
T Consensus       163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v--~~~~D~vi~Ln  213 (254)
T COG1121         163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV--MAYFDRVICLN  213 (254)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh--HhhCCEEEEEc
Confidence            6899999999999999999999984488999999999764  57999998764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.54  E-value=8.8e-15  Score=119.01  Aligned_cols=156  Identities=17%  Similarity=0.160  Sum_probs=110.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc-----------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR-----------  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~-----------  112 (212)
                      +.+..+.|...+.....++++++...+|+++||+|+||||||||+++|+++     |...+++..+...           
T Consensus         6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ   85 (252)
T COG1124           6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ   85 (252)
T ss_pred             EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence            455556665554445788999999999999999999999999999999987     5556665433211           


Q ss_pred             -----cc---cCCch-------------------hHHHHHHHhCCcc--------CCCCCccchHhHHHHhcCChH--HH
Q psy17138        113 -----AY---DVGTR-------------------GNQVVRELFGEDI--------ALPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       113 -----~~---~~~~~-------------------~~~~~~~~~g~~~--------~~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                           .|   .|...                   ....+.+.+|.+-        .-+.|+.+|-.+++.+--+|.  .+
T Consensus        86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIl  165 (252)
T COG1124          86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLIL  165 (252)
T ss_pred             EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEe
Confidence                 01   11000                   0223334444321        125688999999999999998  55


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++.+...+++.+.+.+  .+-.++++ +|.+--.  ..+|||+++++
T Consensus       166 DEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I-sHdl~~v--~~~cdRi~Vm~  216 (252)
T COG1124         166 DEPTSALDVSVQAQILNLLLELKKERGLTYLFI-SHDLALV--EHMCDRIAVMD  216 (252)
T ss_pred             cCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE-eCcHHHH--HHHhhheeeee
Confidence            88899999999999999988877  23345555 8888543  57999999876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.53  E-value=8.9e-15  Score=118.97  Aligned_cols=156  Identities=19%  Similarity=0.151  Sum_probs=109.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~  112 (212)
                      +.+..+.|...+....+++++++...+|++++|+||||||||||+++|.++     |...++...+.           +.
T Consensus         4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~   83 (226)
T COG1136           4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK   83 (226)
T ss_pred             EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence            445555565555557888999999999999999999999999999999987     44344431110           00


Q ss_pred             -c--------ccCCc---------------------hhHHHHHHHhCCc-cC-------CCCCccchHhHHHHhcCChH-
Q psy17138        113 -A--------YDVGT---------------------RGNQVVRELFGED-IA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       113 -~--------~~~~~---------------------~~~~~~~~~~g~~-~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                       +        +.+.-                     .....+...+|.. ..       -+.|+.+|..+++.+..+|. 
T Consensus        84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i  163 (226)
T COG1136          84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI  163 (226)
T ss_pred             hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence             0        00000                     0122334444443 11       13567889999999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +.++++.-+++...+++.+.+.+.. ....++++-+|...-+   .+|||++.+.
T Consensus       164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA---~~~dr~i~l~  216 (226)
T COG1136         164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA---KYADRVIELK  216 (226)
T ss_pred             EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH---HhCCEEEEEe
Confidence             4478888999999999999998886 4466888889997654   6999998864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.7e-14  Score=123.70  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc--
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA--  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~--  113 (212)
                      ..+++..++|+...    +++++++....|++++|+|||||||||++|+|+||     |...++...+..      .+  
T Consensus         4 i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam   79 (338)
T COG3839           4 LELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM   79 (338)
T ss_pred             EEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence            34667777775221    77888999999999999999999999999999998     555665444321      11  


Q ss_pred             ------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        114 ------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       114 ------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                            +.|.-.                     ...+.++..+.+-+       -+.|+.+|..+++.+..+|.  ++++
T Consensus        80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE  159 (338)
T COG3839          80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE  159 (338)
T ss_pred             EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence                  122211                     12233333332211       14678899999999999998  7788


Q ss_pred             HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +-+-+++..+..++..|+++. .-..+++.-+|...|+  -.+.|+++++.
T Consensus       160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA--mtladri~Vm~  208 (338)
T COG3839         160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA--MTLADRIVVMN  208 (338)
T ss_pred             chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH--HhhCCEEEEEe
Confidence            888889999999988888765 3344666669999887  46899999886

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.51  E-value=1.7e-14  Score=123.37  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=109.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RA  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~  113 (212)
                      ..+.+.+++|..    ...++++++...+|+++||+|||||||||++++|+++     |...++...+.       + -.
T Consensus         8 i~i~~l~k~~~~----~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig   83 (306)
T PRK13537          8 IDFRNVEKRYGD----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG   83 (306)
T ss_pred             EEEEeEEEEECC----eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence            346677777742    2578889999999999999999999999999999987     33333322111       0 01


Q ss_pred             ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      |.++.       .                     ...++++.++..-.       -+.|+.+|..++..+.++|+  +++
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD  163 (306)
T PRK13537         84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD  163 (306)
T ss_pred             EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            11110       0                     01122333443211       12356678889999999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|..++.+++.++++......+++.+|.+.+.  ..+||++++++
T Consensus       164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~--~~~~d~i~il~  212 (306)
T PRK13537        164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVIE  212 (306)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            99999999999999999988764467889999999875  47899999885

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.51  E-value=3.2e-14  Score=115.53  Aligned_cols=153  Identities=17%  Similarity=0.217  Sum_probs=111.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----c----
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----A----  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----~----  113 (212)
                      .++++..++|..    ....+++++...+|++++|+|||||||||++|.+.++     |...+++..+..-    .    
T Consensus         9 I~vr~v~~~fG~----~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           9 IEVRGVTKSFGD----RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             EEEeeeeeecCC----EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            457777787752    2567889999999999999999999999999999987     5555555443110    0    


Q ss_pred             ------ccCCc-----------------------hhHHHH--------------HHHhCCccCCCCCccchHhHHHHhcC
Q psy17138        114 ------YDVGT-----------------------RGNQVV--------------RELFGEDIALPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       114 ------~~~~~-----------------------~~~~~~--------------~~~~g~~~~~~~~~~~r~~l~~~vf~  150 (212)
                            ++.+.                       ...+.+              .+.|..++  +.|+..|..|++.+.-
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL--SGGM~KRvaLARAial  162 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL--SGGMRKRVALARAIAL  162 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh--cchHHHHHHHHHHHhc
Confidence                  11110                       001111              12222222  4678889999999999


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ||+  .++++...++|.....+.+.|++++ +-..++++-+|.+.+.  ...||+++++.
T Consensus       163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~--~~i~Drv~~L~  220 (263)
T COG1127         163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL--LTIADRVAVLA  220 (263)
T ss_pred             CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH--HhhhceEEEEe
Confidence            998  4588999999999999999998887 4456777779999875  68999999874

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.50  E-value=3.2e-14  Score=122.64  Aligned_cols=155  Identities=16%  Similarity=0.116  Sum_probs=109.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc---------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR---------  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~---------  112 (212)
                      ..+++.+++|+    ...+++++++...+|++++|+|||||||||++|+|+|+     |...+++..+.+-         
T Consensus         6 l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~   81 (352)
T COG3842           6 LEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM   81 (352)
T ss_pred             EEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence            45777888886    44788999999999999999999999999999999987     4445554333110         


Q ss_pred             ---cc--cCC------------------ch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        113 ---AY--DVG------------------TR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       113 ---~~--~~~------------------~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                         .|  .|.                  ..    ...+..+..+..-+       -+.|+.+|..|++.+-.+|.  +++
T Consensus        82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD  161 (352)
T COG3842          82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD  161 (352)
T ss_pred             eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc
Confidence               00  010                  00    12233333332211       14578889999999999887  557


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++-..++..++.+++..++++. .-....+.-+|.-.||  ..++|+++++.
T Consensus       162 EPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA--l~msDrI~Vm~  211 (352)
T COG3842         162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA--LAMSDRIAVMN  211 (352)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH--hhhccceEEcc
Confidence            7777888888888888887776 3355566669999887  57999998864

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=3.4e-14  Score=119.14  Aligned_cols=158  Identities=17%  Similarity=0.153  Sum_probs=115.1

Q ss_pred             eechhhhhhh-hccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         49 LSSSNLRMRE-LGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        49 iss~~~r~~~-~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      +.++++.|.. .+....+++++++..++|.++||+|.||+|||||+|+++.|     |-..++++++.            
T Consensus         4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~   83 (339)
T COG1135           4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQ   83 (339)
T ss_pred             EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHh
Confidence            4556666765 34456788999999999999999999999999999999987     55667765441            


Q ss_pred             -------cccccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChHH-
Q psy17138        111 -------HRAYDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKDE-  154 (212)
Q Consensus       111 -------~~~~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~~-  154 (212)
                             |-.+....                     ....++++..|..-.       -+.|+.+|..+++.+..+|+. 
T Consensus        84 ~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL  163 (339)
T COG1135          84 KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL  163 (339)
T ss_pred             hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence                   00011100                     123344555554322       146788999999999999984 


Q ss_pred             -HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        155 -MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       155 -~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                       -++.++.++|...+.+.+.+++.+ .-+-++++-+|-|.-  .+++||+|.+++.
T Consensus       164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V--vk~ic~rVavm~~  217 (339)
T COG1135         164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV--VKRICDRVAVLDQ  217 (339)
T ss_pred             EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH--HHHHhhhheEeeC
Confidence             478889999999999999998887 445556665888754  3689999998864

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.49  E-value=5.4e-14  Score=116.33  Aligned_cols=144  Identities=18%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCCchhHHHHHHHhCCcc----
Q psy17138         62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI----  132 (212)
Q Consensus        62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~----  132 (212)
                      .+++++++++...+|+++||+|.|||||||++|+|.+|     |..++++..+..-.-......+.+++...|..-    
T Consensus        25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~  104 (268)
T COG4608          25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY  104 (268)
T ss_pred             ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence            46889999999999999999999999999999999987     556666554322110000112333444434221    


Q ss_pred             ----CCCCCccchHhHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEE
Q psy17138        133 ----ALPDGSIDRKKLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIW  204 (212)
Q Consensus       133 ----~~~~~~~~r~~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~  204 (212)
                          .-++|+.+|-.++..+.-+|++  .+++.+.++-.+...+...+.+++  .+-.++|+ +|.+.-.  +.+||++.
T Consensus       105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI-sHDL~vv--~~isdri~  181 (268)
T COG4608         105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI-SHDLSVV--RYISDRIA  181 (268)
T ss_pred             cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE-EEEHHhh--hhhcccEE
Confidence                1156889999999999888884  467888888888888888887776  45567777 8988764  57999999


Q ss_pred             EEEe
Q psy17138        205 VTFI  208 (212)
Q Consensus       205 ~v~~  208 (212)
                      +++.
T Consensus       182 VMy~  185 (268)
T COG4608         182 VMYL  185 (268)
T ss_pred             EEec
Confidence            8864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.49  E-value=6e-14  Score=117.56  Aligned_cols=153  Identities=13%  Similarity=0.100  Sum_probs=103.2

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC---cccc---------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD---QLGH---------  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D---~i~~---------  111 (212)
                      +.+.+++|...    .+.+++++..+.|+.++|+|||||||||++|+|+||     |..+++..   +..+         
T Consensus         5 i~~~~~~~~~~----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           5 INNVKKRFGAF----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ehhhhhhcccc----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence            45555666532    455689999999999999999999999999999997     44455433   1100         


Q ss_pred             ---------------ccc---------cCCc----hhHHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChH--H
Q psy17138        112 ---------------RAY---------DVGT----RGNQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       112 ---------------~~~---------~~~~----~~~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                                     ++.         .++.    ...+++++.....-       .-+.|+.+|..|+..+.-+|.  +
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL  160 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL  160 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence                           000         0100    01122222211111       114678889999999988888  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++-..++..++.+++..++++- .-...+++-+|...|+  .++||+++++.
T Consensus       161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea--~~ladrvvvl~  212 (345)
T COG1118         161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA--LELADRVVVLN  212 (345)
T ss_pred             ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH--HhhcceEEEec
Confidence            677888899999999988888776 3244555559999886  68999999874

>PLN02388 phosphopantetheine adenylyltransferase

Probab=99.49  E-value=2.1e-14  Score=112.66  Aligned_cols=54  Identities=37%  Similarity=0.546  Sum_probs=49.4

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL   59 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~   59 (212)
                      |||||+||++||.+||++|+++||+||+|++|+++. ++    .++.+||||++|....
T Consensus       112 ~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~-~~----~~~~kiSST~iR~~~~  165 (177)
T PLN02388        112 AIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVP-EE----STGNKLSSTTLRRLEA  165 (177)
T ss_pred             EEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEe-cC----CCCCccCHHHHHHHHH
Confidence            699999999999999999999999999999999999 41    4689999999998754

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.48  E-value=2.8e-14  Score=123.59  Aligned_cols=155  Identities=16%  Similarity=0.122  Sum_probs=108.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-A  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~  113 (212)
                      ..+.+.+++|..    ...++++++...+|.++||+||||||||||+++|+++     |...+++..+.       +. .
T Consensus        42 i~i~nl~k~y~~----~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig  117 (340)
T PRK13536         42 IDLAGVSKSYGD----KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG  117 (340)
T ss_pred             EEEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence            346666666642    2478889999999999999999999999999999986     33333321110       00 0


Q ss_pred             ccCC-------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 YDVG-------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 ~~~~-------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      |.++       ..                     ....+.+.+|..-.       -+.|+.+|-.++..+.++|+  +++
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            1110       00                     01233444443311       13467778889999999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|..++.+++.+.+.......+++.+|.+.+.  .++||+++++.
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~--~~~~d~i~il~  246 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVLE  246 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            89999999999999999988764467889999999875  57999999885

>PRK07667 uridine kinase; Provisional

Probab=99.48  E-value=8.3e-15  Score=117.31  Aligned_cols=126  Identities=21%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCC--CCccchHhHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP--DGSIDRKKLG  145 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~r~~l~  145 (212)
                      ++..+|||.|++||||||+++.|.. +   |  ..+++.|...+....         ....|..-...  .-.+++..+.
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~L~   85 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNK---------RYHTGFEEWYEYYYLQWDIEWLR   85 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhh---------HHhcCCCchhhhhhhhhhHHHHH
Confidence            4568999999999999999999975 2   3  457787764322110         00111110000  0123555555


Q ss_pred             HHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        146 AIVFSNKDEMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       146 ~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ..+|+   .+...+.+.+|.+............  ....++++|++++++.+|.++||.+|+|+||.+
T Consensus        86 ~~v~~---~L~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~  150 (193)
T PRK07667         86 QKFFR---KLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRE  150 (193)
T ss_pred             HHHHH---hhcCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHH
Confidence            44444   2223356788988877655443221  346899999999999999999999999999976

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.48  E-value=3.9e-14  Score=113.29  Aligned_cols=153  Identities=17%  Similarity=0.185  Sum_probs=101.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcccc------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLGH------  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~~------  111 (212)
                      .+++.++.|+    .-.++++++...+++.+.+++|||||||||++|+|+.+.          -..+++..+..      
T Consensus         9 ~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~   84 (253)
T COG1117           9 EVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV   84 (253)
T ss_pred             EecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence            3555666564    337888899999999999999999999999999999872          12222222210      


Q ss_pred             ----cc----ccCC---chhHH-------------------------------HHHHHhCCccC-CCCCccchHhHHHHh
Q psy17138        112 ----RA----YDVG---TRGNQ-------------------------------VVRELFGEDIA-LPDGSIDRKKLGAIV  148 (212)
Q Consensus       112 ----~~----~~~~---~~~~~-------------------------------~~~~~~g~~~~-~~~~~~~r~~l~~~v  148 (212)
                          .+    -.|.   ...|+                               ++-+......+ -+.|+.+|..+++.+
T Consensus        85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal  164 (253)
T COG1117          85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence                00    0000   00111                               11111111111 145778899999998


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .-.|+  +++++++.++|.....+++.|.+++.+. ++++.+|.|.+|  .+..|+.+|+.
T Consensus       165 Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~y-TIviVTHnmqQA--aRvSD~taFf~  222 (253)
T COG1117         165 AVKPEVLLMDEPTSALDPISTLKIEELITELKKKY-TIVIVTHNMQQA--ARVSDYTAFFY  222 (253)
T ss_pred             hcCCcEEEecCcccccCchhHHHHHHHHHHHHhcc-EEEEEeCCHHHH--HHHhHhhhhhc
Confidence            88888  7789999999999999999999987555 455559999886  35667766643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.45  E-value=1.3e-13  Score=109.21  Aligned_cols=137  Identities=16%  Similarity=0.183  Sum_probs=98.1

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCC----------ch
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVG----------TR  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~----------~~  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+..          -.|.+.          ..
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t   94 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS   94 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence            56778889999999999999999999999999986     433444322210          112111          11


Q ss_pred             hHHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccc
Q psy17138        120 GNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ  197 (212)
Q Consensus       120 ~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~  197 (212)
                      ..+.+ .. +..  -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+.......+++.+|.+.+.  .
T Consensus        95 ~~e~l-~~-~~~--LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~--~  168 (182)
T cd03215          95 VAENI-AL-SSL--LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL--L  168 (182)
T ss_pred             HHHHH-HH-Hhh--cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--H
Confidence            12111 11 111  25677788889999999998  66889999999999999999987753356788889998653  5


Q ss_pred             cccCeEEEEE
Q psy17138        198 DQVHEIWVTF  207 (212)
Q Consensus       198 ~~~d~v~~v~  207 (212)
                      ++||+++++.
T Consensus       169 ~~~d~v~~l~  178 (182)
T cd03215         169 GLCDRILVMY  178 (182)
T ss_pred             HhCCEEEEec
Confidence            7899999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=7.2e-14  Score=113.22  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=108.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA---------  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~---------  113 (212)
                      ++.+..++|.   .-.++++++++..++|++++|+|+||||||||+|+|+++     |...++...+....         
T Consensus         5 ~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           5 EVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             EEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            4666777774   233678889999999999999999999999999999987     44444443321000         


Q ss_pred             ----------ccCCchh-----------HHHHHHHhCC------------------c-------cCCCCCccchHhHHHH
Q psy17138        114 ----------YDVGTRG-----------NQVVRELFGE------------------D-------IALPDGSIDRKKLGAI  147 (212)
Q Consensus       114 ----------~~~~~~~-----------~~~~~~~~g~------------------~-------~~~~~~~~~r~~l~~~  147 (212)
                                +-+....           .+.+...||.                  .       -.-+.|+.+|..+++.
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa  161 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA  161 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence                      0000000           0011111111                  0       0114678889999999


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +.|+|.  +-+++-+-++|...+.+.+.+++.. ....++++.-|.+.-+  .++|||++-+..
T Consensus       162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA--~~Y~~Riigl~~  223 (258)
T COG3638         162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA--KKYADRIIGLKA  223 (258)
T ss_pred             HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH--HHHHhhheEecC
Confidence            999998  4578888999999999999998876 5667888989988765  579999886653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.44  E-value=1.1e-13  Score=117.97  Aligned_cols=142  Identities=18%  Similarity=0.164  Sum_probs=100.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCCc-------h----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVGT-------R----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~~-------~----  119 (212)
                      ..++++++...+|.++||+||||||||||+++|+++     |...++...+.       + -.|.++.       .    
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   86 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN   86 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence            356778999999999999999999999999999987     33334332110       0 0011110       0    


Q ss_pred             -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                       ....+++.+|..-.       -+.|+.+|..++..+.++|+  +++++.+.++|...+.+++.
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  166 (302)
T TIGR01188        87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY  166 (302)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence                             11223444443211       13467778889999999998  56899999999999999999


Q ss_pred             HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.......+++.+|.+.+.  .++||+++++.
T Consensus       167 l~~~~~~g~tvi~~sH~~~~~--~~~~d~v~~l~  198 (302)
T TIGR01188       167 IRALKEEGVTILLTTHYMEEA--DKLCDRIAIID  198 (302)
T ss_pred             HHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            988763456888889999774  47899999875

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.44  E-value=8.2e-14  Score=118.82  Aligned_cols=152  Identities=16%  Similarity=0.218  Sum_probs=106.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYD  115 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~  115 (212)
                      +.+.+++|..    ...++++++...+|.++||+||||||||||+++|.++     |...+++..+..        -.|.
T Consensus         5 ~~~l~~~~~~----~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         5 VSSLTKLYGT----QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEECC----EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence            4555666632    2467888999999999999999999999999999987     333333321100        0011


Q ss_pred             CCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        116 VGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       116 ~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                      +..                            .....+++.+|..-.       -+.|+.+|-.++..+..+|.  +++++
T Consensus        81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP  160 (301)
T TIGR03522        81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP  160 (301)
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            110                            012233344443211       13466778889999999998  56899


Q ss_pred             HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|..++.+++.+++... ...+++.+|.+.+.  .++||+++++.
T Consensus       161 t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~--~~~~d~i~~l~  206 (301)
T TIGR03522       161 TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEV--EAICDRVIIIN  206 (301)
T ss_pred             cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            999999999999999988754 47888999999875  47999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.44  E-value=6.7e-14  Score=121.34  Aligned_cols=157  Identities=16%  Similarity=0.149  Sum_probs=108.1

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------R  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~  112 (212)
                      +.+.+++|...+.....++++++...+|.++||+|+||||||||+++|+++     |...++...+..           .
T Consensus         4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~   83 (343)
T TIGR02314         4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ   83 (343)
T ss_pred             EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            455666664222223578889999999999999999999999999999987     444444322210           0


Q ss_pred             c-c-------cCCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        113 A-Y-------DVGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~-~-------~~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      + |       .+....                     ...+++.+|..-.       -+.|+.+|-.|+..+..+|+  +
T Consensus        84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL  163 (343)
T TIGR02314        84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL  163 (343)
T ss_pred             EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            0 1       110011                     1223344443211       13467788899999999998  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.++|.....+.+.+++.. .....+++-+|.+...  .++||++++++
T Consensus       164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v--~~~~d~v~vl~  215 (343)
T TIGR02314       164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV--KRICDCVAVIS  215 (343)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            688999999999999999998876 3356777779998764  57899999885

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.44  E-value=1.4e-13  Score=110.83  Aligned_cols=142  Identities=20%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccCCc--------------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDVGT--------------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~~~--------------  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.     + -.|.+..              
T Consensus        14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l   93 (205)
T cd03226          14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL   93 (205)
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence            356778899999999999999999999999999986     33333322210     0 0010000              


Q ss_pred             -----------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        119 -----------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       119 -----------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                 ......++.+|..-+       -+.|+.+|-.++..+..+|+  +++++.+.++|...+.+.+.+.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  173 (205)
T cd03226          94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA  173 (205)
T ss_pred             hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                       012233444544311       13467778888888888888  6688999999999999999998875


Q ss_pred             CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 ~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .....+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~~~~tii~~sH~~~~~--~~~~d~i~~l~  200 (205)
T cd03226         174 AQGKAVIVITHDYEFL--AKVCDRVLLLA  200 (205)
T ss_pred             HCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            3456788889998764  46899999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.41  E-value=2.9e-13  Score=106.42  Aligned_cols=137  Identities=18%  Similarity=0.129  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCCch-hHHHHHHHh
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVGTR-GNQVVRELF  128 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~~~-~~~~~~~~~  128 (212)
                      ...+++++...+|.+++|+|+||||||||+++|+++     |...++...+..         -.|.+... .+...+   
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv---   92 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSI---   92 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcH---
Confidence            356778889999999999999999999999999987     333343322110         01111110 000000   


Q ss_pred             CCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        129 GEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       129 g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ...+ -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+.......+++.+|.+...   .+||+++++
T Consensus        93 ~~~l-LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~---~~~d~v~~l  168 (173)
T cd03246          93 AENI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL---ASADRILVL  168 (173)
T ss_pred             HHHC-cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCEEEEE
Confidence            0001 24677788899999999998  56889999999999999999987753356778889988653   479999988


Q ss_pred             E
Q psy17138        207 F  207 (212)
Q Consensus       207 ~  207 (212)
                      +
T Consensus       169 ~  169 (173)
T cd03246         169 E  169 (173)
T ss_pred             E
Confidence            5

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.41  E-value=1.7e-13  Score=113.25  Aligned_cols=146  Identities=18%  Similarity=0.189  Sum_probs=102.4

Q ss_pred             cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-CCcc-------------------------
Q psy17138         61 TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-CDQL-------------------------  109 (212)
Q Consensus        61 ~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-~D~i-------------------------  109 (212)
                      +...++.+++++.++|.++|++|+||+||||++|+|.|+     |...+. -|..                         
T Consensus        35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence            355788899999999999999999999999999999986     222221 1111                         


Q ss_pred             -------ccccccCCch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        110 -------GHRAYDVGTR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       110 -------~~~~~~~~~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                             .+.+|.-+..    ..+.+.+..+.+-+       -+.|+..|..|+..+.++|.  .+++++-.++-.....
T Consensus       115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~  194 (325)
T COG4586         115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN  194 (325)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence                   1111211111    12222333332210       14577778889889999998  4577777788888999


Q ss_pred             HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +++++++.. ....+|++.+|++..  +..+||+++.++.
T Consensus       195 ir~Flke~n~~~~aTVllTTH~~~d--i~~lc~rv~~I~~  232 (325)
T COG4586         195 IREFLKEYNEERQATVLLTTHIFDD--IATLCDRVLLIDQ  232 (325)
T ss_pred             HHHHHHHHHHhhCceEEEEecchhh--HHHhhhheEEeeC
Confidence            999998876 556799999999954  5689999999875

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.41  E-value=9.2e-14  Score=122.70  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=106.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------ccc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRA-Y  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~-~  114 (212)
                      +.+.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.        +.+ |
T Consensus         6 ~~nls~~y~~----~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~   81 (402)
T PRK09536          6 VSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS   81 (402)
T ss_pred             EeeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence            4455555531    2467788999999999999999999999999999986     33333321110        000 0


Q ss_pred             cC-----------------------------Cc---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        115 DV-----------------------------GT---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~-----------------------------~~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+                             ..   ......++.+|..-+       -+.|+.+|..|+..+.++|+  
T Consensus        82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL  161 (402)
T PRK09536         82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL  161 (402)
T ss_pred             EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            00                             00   012233344443211       13467788899999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.++|....++.+.++++......+++.+|.+.++  ..+||++|+++
T Consensus       162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~--~~~adrii~l~  213 (402)
T PRK09536        162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLA--ARYCDELVLLA  213 (402)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            56889999999999999999988763456888889999875  47899999885

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.41  E-value=2.3e-13  Score=116.13  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=105.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-cc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-AY  114 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~~  114 (212)
                      .+.+.+++|..    ...++++++...+|.++||+|+||||||||+++|+++     |...+++..+.       +. .|
T Consensus         6 ~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   81 (303)
T TIGR01288         6 DLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV   81 (303)
T ss_pred             EEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence            35555566631    2467888999999999999999999999999999986     33333321110       00 01


Q ss_pred             cCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        115 DVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       115 ~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                      .++       ...                     ...+.+.+|..-.       -+.|+.+|-.++..+..+|+  ++++
T Consensus        82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  161 (303)
T TIGR01288        82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE  161 (303)
T ss_pred             EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            110       000                     1122333443211       12366778889989999998  5689


Q ss_pred             HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.++|.....+.+.+.+.......+++.+|.+.+.  .++||+++++.
T Consensus       162 Pt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~--~~~~d~i~~l~  209 (303)
T TIGR01288       162 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVLE  209 (303)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            9999999999999999988754456788889999764  57899999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.41  E-value=3.7e-13  Score=108.96  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=103.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cccccC
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HRAYDV  116 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~~~~~  116 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.       +-.|.+
T Consensus         3 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~   78 (213)
T cd03259           3 LKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF   78 (213)
T ss_pred             eeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence            3444555531    1367888999999999999999999999999999986     33333322110       000111


Q ss_pred             Cc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHH
Q psy17138        117 GT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLN  159 (212)
Q Consensus       117 ~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~  159 (212)
                      ..       .                     ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259          79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            10       0                     01223344443211       13467778889988999988  668999


Q ss_pred             hhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        160 QAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       160 ~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+++.....+.+.+.+.. .....+++.+|.+.+.  .++||+++++.
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~--~~~~d~v~~l~  205 (213)
T cd03259         159 SALDAKLREELREELKELQRELGITTIYVTHDQEEA--LALADRIAVMN  205 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH--HHhcCEEEEEE
Confidence            9999999999999998765 3356777889998653  47899999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.40  E-value=2.4e-13  Score=110.66  Aligned_cols=142  Identities=20%  Similarity=0.209  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---ccc-cccCC-------ch--------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHR-AYDVG-------TR--------  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~-~~~~~-------~~--------  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+   .+. .|.++       ..        
T Consensus        18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~   97 (220)
T cd03293          18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG   97 (220)
T ss_pred             EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence            356778899999999999999999999999999987     3223322111   000 01000       00        


Q ss_pred             -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                                   .....++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.++|.....+.+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~  177 (220)
T cd03293          98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI  177 (220)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence                         11223344443211       13356678889989999988  568899999999999999999876


Q ss_pred             c-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        178 S-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       178 ~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      . .....+++.+|.+.+.  .++||++++++
T Consensus       178 ~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  206 (220)
T cd03293         178 WRETGKTVLLVTHDIDEA--VFLADRVVVLS  206 (220)
T ss_pred             HHHcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            4 3356777779998653  47899999886

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.40  E-value=1.6e-13  Score=106.95  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI  139 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  139 (212)
                      .++++++...+|++++|+|+||||||||+++|+++-     ...++...+...      ...+......+.-..-+.|+.
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~------~~~~~~~~~i~~~~qLS~G~~   88 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA------SPRDARRAGIAMVYQLSVGER   88 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC------CHHHHHhcCeEEEEecCHHHH
Confidence            567788899999999999999999999999999872     223332211100      000000011111000256778


Q ss_pred             chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|-.++..+..+|+  +++++.+.+++...+.+.+.+++.......+++.+|.+.+.  ..+||+++++.
T Consensus        89 qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~--~~~~d~~~~l~  156 (163)
T cd03216          89 QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV--FEIADRVTVLR  156 (163)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88899999999998  56888999999999999999987753356777779998653  46899999885

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.40  E-value=8.1e-13  Score=104.35  Aligned_cols=142  Identities=17%  Similarity=0.061  Sum_probs=100.2

Q ss_pred             ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCc-c-c--cccccCCchhHHHHHHHhCCcc--
Q psy17138         60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQ-L-G--HRAYDVGTRGNQVVRELFGEDI--  132 (212)
Q Consensus        60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~-i-~--~~~~~~~~~~~~~~~~~~g~~~--  132 (212)
                      |....+++++++...+|.+++|+||||||||||++++..- |...+.... . .  .-.|.+.    .+.++.+|...  
T Consensus         5 ~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q----~~~l~~~~L~~~~   80 (176)
T cd03238           5 GANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ----LQFLIDVGLGYLT   80 (176)
T ss_pred             ceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH----HHHHHHcCCCccc
Confidence            5566778889999999999999999999999999998531 333333221 0 0  0112221    34566666432  


Q ss_pred             CC------CCCccchHhHHHHhcCC--hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCe
Q psy17138        133 AL------PDGSIDRKKLGAIVFSN--KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHE  202 (212)
Q Consensus       133 ~~------~~~~~~r~~l~~~vf~~--~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~  202 (212)
                      ..      +.|+.+|-.++..+..+  |+  +++++.+.+++...+.+.+.+++.......+++-+|.+.+.   ..||+
T Consensus        81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~---~~~d~  157 (176)
T cd03238          81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL---SSADW  157 (176)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCE
Confidence            11      22456788888889999  87  56888999999999999998887653456777779988653   47999


Q ss_pred             EEEEEe
Q psy17138        203 IWVTFI  208 (212)
Q Consensus       203 v~~v~~  208 (212)
                      ++++.-
T Consensus       158 i~~l~~  163 (176)
T cd03238         158 IIDFGP  163 (176)
T ss_pred             EEEECC
Confidence            988753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=2.4e-13  Score=117.99  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~  112 (212)
                      +.+.+++|...+.....++++++...+|.++||+|+||||||||+++|+++     |...++...+.           +.
T Consensus         4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~   83 (343)
T PRK11153          4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ   83 (343)
T ss_pred             EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            445555553111122467888999999999999999999999999999987     33333322111           00


Q ss_pred             -cccCC-------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        113 -AYDVG-------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 -~~~~~-------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                       .|.++       ..                     ....+++.+|..-.       -+.|+.+|-.|+..+..+|+  +
T Consensus        84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl  163 (343)
T PRK11153         84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL  163 (343)
T ss_pred             EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence             01100       00                     11123344443211       13467778889999999998  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.++|.....+.+.+.+.. .....+++.+|.+.+.  .++||+++++.
T Consensus       164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i--~~~~d~v~~l~  215 (343)
T PRK11153        164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV--KRICDRVAVID  215 (343)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            688999999999999999998875 3356788889998764  57899999885

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.39  E-value=3.6e-13  Score=109.34  Aligned_cols=141  Identities=15%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            + -.|.+       ..
T Consensus        18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (218)
T cd03255          18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL   97 (218)
T ss_pred             eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence            356778899999999999999999999999999987     33333321110            0 00100       00


Q ss_pred             h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                     .....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.++|....
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (218)
T cd03255          98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK  177 (218)
T ss_pred             cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence            0                     11223344443211       13467778889999999998  668999999999999


Q ss_pred             HHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+... ....+++.+|.+.+.  . +||+++++.
T Consensus       178 ~l~~~l~~~~~~~~~tii~~sH~~~~~--~-~~d~v~~l~  214 (218)
T cd03255         178 EVMELLRELNKEAGTTIVVVTHDPELA--E-YADRIIELR  214 (218)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCHHHH--h-hhcEEEEee
Confidence            99999988753 456888889998764  3 899999885

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=5.2e-13  Score=109.89  Aligned_cols=144  Identities=19%  Similarity=0.166  Sum_probs=104.1

Q ss_pred             cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-----------ccccCC
Q psy17138         63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-----------RAYDVG  117 (212)
Q Consensus        63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-----------~~~~~~  117 (212)
                      ...++++++...+|..++|+|+|||||||++++|+++     |...++.-.+.         +           .++.+.
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            4667788999999999999999999999999999997     33334322111         0           000000


Q ss_pred             -------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        118 -------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       118 -------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                         ...........|..-+       -+.|+.+|..|+..+..+|+  +++++.+.++|..+++
T Consensus        97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~  176 (235)
T COG1122          97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE  176 (235)
T ss_pred             HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence                               0012233334443211       14678899999998888888  6689999999999999


Q ss_pred             HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +.+.+.++. .....+++-+|.+...  ..+||++|+++-
T Consensus       177 l~~~l~~L~~~~~~tii~~tHd~~~~--~~~ad~v~vl~~  214 (235)
T COG1122         177 LLELLKKLKEEGGKTIIIVTHDLELV--LEYADRVVVLDD  214 (235)
T ss_pred             HHHHHHHHHhcCCCeEEEEeCcHHHH--HhhCCEEEEEEC
Confidence            999999987 4457888889999774  578999999864

>PRK06696 uridine kinase; Validated

Probab=99.39  E-value=1.9e-13  Score=111.81  Aligned_cols=129  Identities=19%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c---CCeee--eCCccccccccCCchhHHHHHHHhCCccCC--CCCccchHhH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L---GAGLI--NCDQLGHRAYDVGTRGNQVVRELFGEDIAL--PDGSIDRKKL  144 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l---g~~vi--~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~r~~l  144 (212)
                      ..++.+|||.|++||||||+++.|+. |   |..++  ++|...     ...    ......|..-..  ..+.+|+..|
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~-----~~~----~~r~~~~~~~~~g~~~~~~d~~~L   89 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH-----NPR----VIRYRRGRESAEGYYEDAYDYTAL   89 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc-----CCH----HHHHHcCCCChhhcCccccCHHHH
Confidence            55689999999999999999999984 4   55544  366422     111    111122211100  0246888888


Q ss_pred             HHHhcC--ChHHHHHHHhhhhHHHHHHHHH-HHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        145 GAIVFS--NKDEMNKLNQAIWPLILAQVKE-EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       145 ~~~vf~--~~~~~~~~~~i~~p~~~~~~~~-~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ...+|.  ++.....++..+|+...+.... ..... ....++++|++++++.+++++||.+|+|+||.+
T Consensus        90 ~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e  158 (223)
T PRK06696         90 RRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLA-APNAVLIVDGTFLLRPELRDLWDYKIFLDTDFE  158 (223)
T ss_pred             HHHHHhhccCCCceeEeeeeeccccCcccCCCceec-CCCCEEEEecHHHhhhhHHhhCCEEEEEECCHH
Confidence            888876  3322222344455554433221 11111 456799999999999889999999999999975

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.39  E-value=4.7e-13  Score=108.17  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cccCCc--------h---
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AYDVGT--------R---  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~~~~~--------~---  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. .|.+..        .   
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~   95 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE   95 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence            56778899999999999999999999999999986     33334322110        00 011100        0   


Q ss_pred             ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                                        ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~  175 (211)
T cd03225          96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE  175 (211)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                              01123333443211       12356778888888999988  5689999999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       176 ~l~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~  208 (211)
T cd03225         176 LLKKLKAEGKTIIIVTHDLDLL--LELADRVIVLE  208 (211)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            9987753356788889998764  46899999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00017 cmk cytidylate kinase

Probab=99.39  E-value=3.9e-12  Score=103.70  Aligned_cols=133  Identities=12%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc---------ccCCchhHHHHHHHhCCccCCCCCc----cchH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA---------YDVGTRGNQVVRELFGEDIALPDGS----IDRK  142 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~----~~r~  142 (212)
                      .+|+|+||+||||||+++.|+ .+|+.+++++.+.+.+         ...+..........++......++.    +++.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE   82 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence            689999999999999999998 4899999988765433         1122233445566677665433433    6788


Q ss_pred             hHHHHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        143 KLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       143 ~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .++..++++.-.........+|.++..+.+.++++... .-+|+++..+-.. +...+|.++|+++|.+
T Consensus        83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~-~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~  149 (217)
T TIGR00017        83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKN-DGIIADGRDIGTV-VFPNAEVKIFLDASVE  149 (217)
T ss_pred             chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-CCEEEEEcCcceE-EeCCCCEEEEEECCHH
Confidence            88888888887766777789999999999998887533 3588889964432 2233789999999875

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.39  E-value=5.1e-13  Score=120.22  Aligned_cols=157  Identities=20%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             ceechhhhhhhhc-------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------
Q psy17138         48 KLSSSNLRMRELG-------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------  109 (212)
Q Consensus        48 ~iss~~~r~~~~g-------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------  109 (212)
                      ++.+..++|...+       ...++++++++...+|+++||+|+|||||||++|+|.+|     |..+++...+      
T Consensus       282 ~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~  361 (539)
T COG1123         282 SVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE  361 (539)
T ss_pred             EeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccch
Confidence            3777888887532       356888999999999999999999999999999999998     4455554331      


Q ss_pred             ----cccc---c-------cCCch----------------------hHHHHHHHhCCcc--------CCCCCccchHhHH
Q psy17138        110 ----GHRA---Y-------DVGTR----------------------GNQVVRELFGEDI--------ALPDGSIDRKKLG  145 (212)
Q Consensus       110 ----~~~~---~-------~~~~~----------------------~~~~~~~~~g~~~--------~~~~~~~~r~~l~  145 (212)
                          .+..   +       .|...                      ....+.+..|.+-        .-+.|+.+|-.++
T Consensus       362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA  441 (539)
T COG1123         362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA  441 (539)
T ss_pred             hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence                0000   1       01000                      1112222222211        1256888999999


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+..+|.  ..+++...++|.+...+.+.+.+++  -+-.++|| +|.|.-.  +.+||++++++
T Consensus       442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfI-SHDl~vV--~~i~drv~vm~  504 (539)
T COG1123         442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI-SHDLAVV--RYIADRVAVMY  504 (539)
T ss_pred             HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEE-eCCHHHH--HhhCceEEEEE
Confidence            99999998  4477888999999999999988887  34567777 8887543  57999999886

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.39  E-value=7.3e-13  Score=106.48  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCcccc----------ccccCCc------hh
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLGH----------RAYDVGT------RG  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~~----------~~~~~~~------~~  120 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++       |...++...+..          -.|.+..      ..
T Consensus        14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (200)
T cd03217          14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK   93 (200)
T ss_pred             EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence            367788999999999999999999999999999986       223344322211          1122221      11


Q ss_pred             HHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccccccc
Q psy17138        121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQD  198 (212)
Q Consensus       121 ~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~  198 (212)
                      .......+...+  +.|+.+|..++..+..+|+  +++++.+.+++...+.+.+.+.+.......+++.+|.+...  .+
T Consensus        94 ~~~~l~~~~~~L--S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~--~~  169 (200)
T cd03217          94 NADFLRYVNEGF--SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL--DY  169 (200)
T ss_pred             HHHHHhhccccC--CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HH
Confidence            122222222222  4577788899999999998  56889999999999999999887753356788889988654  45


Q ss_pred             -ccCeEEEEE
Q psy17138        199 -QVHEIWVTF  207 (212)
Q Consensus       199 -~~d~v~~v~  207 (212)
                       +||+++++.
T Consensus       170 ~~~d~i~~l~  179 (200)
T cd03217         170 IKPDRVHVLY  179 (200)
T ss_pred             hhCCEEEEEE
Confidence             699998885

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.39  E-value=5e-13  Score=108.50  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.       + -.|.+.       ..    
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   98 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN   98 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence            356778899999999999999999999999999987     33333321110       0 001000       00    


Q ss_pred             -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                       .....++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++...+.+.+.
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~  178 (218)
T cd03266          99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF  178 (218)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence                             11223344443211       13466778888889999998  66889999999999999999


Q ss_pred             HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.......+++.+|.+.+.  .++||+++++.
T Consensus       179 l~~~~~~~~tii~~tH~~~~~--~~~~d~i~~l~  210 (218)
T cd03266         179 IRQLRALGKCILFSTHIMQEV--ERLCDRVVVLH  210 (218)
T ss_pred             HHHHHHCCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            988753356788889988664  46899999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=2.5e-13  Score=118.13  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=108.9

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-  113 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-  113 (212)
                      ...+++.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+.      +.+ 
T Consensus         6 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig   81 (351)
T PRK11432          6 FVVLKNITKRFGS----NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC   81 (351)
T ss_pred             EEEEEeEEEEECC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence            3446677777642    2357788999999999999999999999999999987     44444432221      000 


Q ss_pred             -------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 -------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 -------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                             +.+...                     ....+++.+|..-+       -+.|+.+|..|++.+..+|+  +++
T Consensus        82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD  161 (351)
T PRK11432         82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD  161 (351)
T ss_pred             EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence                   011100                     11223344443221       13467788899999999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+++..+..+++.++++. .....+++.+|.+.++  ..+||++++++
T Consensus       162 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~--~~laD~i~vm~  211 (351)
T PRK11432        162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA--FAVSDTVIVMN  211 (351)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            8899999999999999988775 3356778889999885  47899999886

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.38  E-value=4.6e-13  Score=105.85  Aligned_cols=120  Identities=20%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHH
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLG  145 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~  145 (212)
                      +...+|++++|+|+||||||||+++|+++     |...++...+.   |.+..             ..-+.|+.+|..++
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~---~~~q~-------------~~LSgGq~qrv~la   83 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV---YKPQY-------------IDLSGGELQRVAIA   83 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE---EEccc-------------CCCCHHHHHHHHHH
Confidence            56788999999999999999999999987     22223221111   11110             00256777888899


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ..+..+|+  +++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.-
T Consensus        84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~~  147 (177)
T cd03222          84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL--DYLSDRIHVFEG  147 (177)
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH--HHhCCEEEEEcC
Confidence            88888888  5688899999999999999988765 3336777889998664  468999988864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.38  E-value=3e-13  Score=126.58  Aligned_cols=155  Identities=19%  Similarity=0.217  Sum_probs=106.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------ccc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GHR  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~~  112 (212)
                      .-.+++.+++|...+.  ..++++++..+.|+++||+|.||||||||+|+|.++     |...+|.-++        .+.
T Consensus       471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~  548 (709)
T COG2274         471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ  548 (709)
T ss_pred             eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence            3567777777754322  567889999999999999999999999999999997     3334443222        111


Q ss_pred             c-ccCC------ch------------hHHHH------------HH-----------HhCCccCCCCCccchHhHHHHhcC
Q psy17138        113 A-YDVG------TR------------GNQVV------------RE-----------LFGEDIALPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       113 ~-~~~~------~~------------~~~~~------------~~-----------~~g~~~~~~~~~~~r~~l~~~vf~  150 (212)
                      + |.++      +.            ..+++            +.           ..|..+  +.|+.+|-.|++.+.+
T Consensus       549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L--SGGQrQrlalARaLl~  626 (709)
T COG2274         549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL--SGGQRQRLALARALLS  626 (709)
T ss_pred             eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC--CHHHHHHHHHHHHhcc
Confidence            1 1110      00            01111            11           111111  4578899999999999


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +|.  ++++.++-+++...+.+.+.+.+...+ +++++-+|-+.--   +.||++++++-
T Consensus       627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-~T~I~IaHRl~ti---~~adrIiVl~~  682 (709)
T COG2274         627 KPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIIIAHRLSTI---RSADRIIVLDQ  682 (709)
T ss_pred             CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-CeEEEEEccchHh---hhccEEEEccC
Confidence            999  668899999999999998888877544 5666658877543   58999998763

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.38  E-value=8.1e-13  Score=108.27  Aligned_cols=142  Identities=16%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------h--
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------R--  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~--  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         + -.|.+..       .  
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (232)
T cd03218          14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE   93 (232)
T ss_pred             EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence            367788999999999999999999999999999986     33333321110         0 0011110       0  


Q ss_pred             -------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138        120 -------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK  171 (212)
Q Consensus       120 -------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~  171 (212)
                                         ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~  173 (232)
T cd03218          94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ  173 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence                               01223333443211       12356677888888888888  568899999999999999


Q ss_pred             HHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        172 EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       172 ~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+++.......+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~~l~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~  207 (232)
T cd03218         174 KIIKILKDRGIGVLITDHNVRET--LSITDRAYIIY  207 (232)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99887753456788889988653  57899998875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.38  E-value=6e-13  Score=108.33  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~----  119 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.       + -.|.+.       ..    
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (220)
T cd03265          14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN   93 (220)
T ss_pred             EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence            356788899999999999999999999999999986     32333321110       0 001111       00    


Q ss_pred             -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                       ....+++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++.....+.+.
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (220)
T cd03265          94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY  173 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence                             11223344443211       13467778889989999998  56889999999999999999


Q ss_pred             HHhhcCC-CcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.... ...+++.+|.+.+.  ..+||+++++.
T Consensus       174 l~~~~~~~~~tvi~~tH~~~~~--~~~~d~i~~l~  206 (220)
T cd03265         174 IEKLKEEFGMTILLTTHYMEEA--EQLCDRVAIID  206 (220)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            8877532 55777779988763  46899998875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.38  E-value=5.5e-13  Score=108.19  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=97.7

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch-
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR-  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~-  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +. .|.+.       .. 
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV   97 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence            56778899999999999999999999999999987     33333321110           00 01110       00 


Q ss_pred             --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                                          .....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  177 (216)
T TIGR00960        98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDI  177 (216)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence                                01122333443211       12367778889999999998  66899999999999999


Q ss_pred             HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       178 ~~~l~~~~~~~~tii~vsH~~~~~--~~~~d~i~~l~  212 (216)
T TIGR00960       178 MRLFEEFNRRGTTVLVATHDINLV--ETYRHRTLTLS  212 (216)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            999987753356777779998654  46899999875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.38  E-value=5.3e-13  Score=109.70  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +. .|.+.       ..
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (235)
T cd03261          14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT   93 (235)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence            356788899999999999999999999999999986     33333321110           00 01111       00


Q ss_pred             h----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        120 G----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 ~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                      ....++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++....
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~  173 (235)
T cd03261          94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG  173 (235)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            0                      1122333443211       12357778889989999988  668999999999999


Q ss_pred             HHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+++... ....+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~--~~~~d~v~~l~  211 (235)
T cd03261         174 VIDDLIRSLKKELGLTSIMVTHDLDTA--FAIADRIAVLY  211 (235)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHH--HHhcCEEEEEE
Confidence            99999987753 356777779998764  57899999885

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.37  E-value=8.1e-13  Score=103.83  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------ccccCCch-hHH--HHHHHh
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYDVGTR-GNQ--VVRELF  128 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~~~~~-~~~--~~~~~~  128 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...++...+..        -.|.++.. .+.  .+.+. 
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~-   93 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN-   93 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH-
Confidence            56778899999999999999999999999999986     333343322210        01111110 000  00000 


Q ss_pred             CCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        129 GEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       129 g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                         +.-+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+++.......+++.+|...+.  ..+||+++++
T Consensus        94 ---~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~--~~~~d~i~~l  168 (173)
T cd03230          94 ---LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA--ERLCDRVAIL  168 (173)
T ss_pred             ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH--HHhCCEEEEE
Confidence               0024577788889999999998  66889999999999999999988753346777778987654  4689999988


Q ss_pred             E
Q psy17138        207 F  207 (212)
Q Consensus       207 ~  207 (212)
                      .
T Consensus       169 ~  169 (173)
T cd03230         169 N  169 (173)
T ss_pred             e
Confidence            6

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=3e-13  Score=117.93  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc---
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA---  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~---  113 (212)
                      .+.+.+++|.  + ....++++++...+|.+++|+||||||||||+++|+++     |...++...+..      .+   
T Consensus         5 ~i~~l~~~~~--~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   81 (356)
T PRK11650          5 KLQAVRKSYD--G-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV   81 (356)
T ss_pred             EEEeEEEEeC--C-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            3555556652  1 12356778899999999999999999999999999987     433444322210      00   


Q ss_pred             -----ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        114 -----YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       114 -----~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                           +.+...                     ....+++.+|..-+       -+.|+.+|..|+..+..+|+  +++++
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP  161 (356)
T PRK11650         82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP  161 (356)
T ss_pred             eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                 011100                     11233444444321       13467789999999999998  56888


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~l~D~i~vl~  209 (356)
T PRK11650        162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA--MTLADRVVVMN  209 (356)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            89999999999999888775 3356777779999775  57999999875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.37  E-value=5.2e-13  Score=105.60  Aligned_cols=141  Identities=19%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---ccCCchhHHHHHHHhCCccC---
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA---YDVGTRGNQVVRELFGEDIA---  133 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~---~~~~~~~~~~~~~~~g~~~~---  133 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+....   +...-....+.++.+|..-.   
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~   93 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR   93 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC
Confidence            56778889999999999999999999999999987     33344432221100   00000011113344443211   


Q ss_pred             ----CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC-CcEEEEEeccccccccccccCeEEEE
Q psy17138        134 ----LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       134 ----~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                          -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+.... ...+++.+|.+.+.  .++||+++++
T Consensus        94 ~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~--~~~~d~~~~l  171 (180)
T cd03214          94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA--ARYADRVILL  171 (180)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence                13467778889988999998  568899999999999999988877532 45777778988764  4689999987


Q ss_pred             E
Q psy17138        207 F  207 (212)
Q Consensus       207 ~  207 (212)
                      .
T Consensus       172 ~  172 (180)
T cd03214         172 K  172 (180)
T ss_pred             E
Confidence            5

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.37  E-value=6.9e-13  Score=108.14  Aligned_cols=154  Identities=16%  Similarity=0.154  Sum_probs=107.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc-----ccCC
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA-----YDVG  117 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~-----~~~~  117 (212)
                      .+.+++++|+..    .+++++++..+.|+++|++|+||+||||++|+|.++     |...+++..+....     |.|.
T Consensus         4 ~ie~vtK~Fg~k----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE   79 (300)
T COG4152           4 EIEGVTKSFGDK----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE   79 (300)
T ss_pred             EEecchhccCce----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence            477888888743    788999999999999999999999999999999986     44455554433222     2222


Q ss_pred             c-------hh---------------------HHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138        118 T-------RG---------------------NQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQ  160 (212)
Q Consensus       118 ~-------~~---------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~  160 (212)
                      .       ..                     .+.+.+.+......       +.|..++-.+-..+.+.|+  .++++-+
T Consensus        80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS  159 (300)
T COG4152          80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS  159 (300)
T ss_pred             hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence            1       01                     11222222211110       1233344444457778887  4567777


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        161 AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       161 i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++|.-.+.+++.|.+.+.....+++.+|.|-..  ..+||++..+.
T Consensus       160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v--EeLCD~llmL~  204 (300)
T COG4152         160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV--EELCDRLLMLK  204 (300)
T ss_pred             CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH--HHHhhhhheec
Confidence            8999999999999988886778999999999765  57999987764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.36  E-value=9.5e-13  Score=106.57  Aligned_cols=142  Identities=14%  Similarity=0.150  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCCc-------h
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVGT-------R  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~~-------~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +. .|.+..       .
T Consensus        16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   95 (214)
T TIGR02673        16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT   95 (214)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence            367788899999999999999999999999999987     32333321110           00 111110       0


Q ss_pred             ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                           ....+++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++..+..
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~  175 (214)
T TIGR02673        96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER  175 (214)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence                                 01122333343211       12356778888888889988  6688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+++.......+++.+|.+.+.  ..+||++++++
T Consensus       176 l~~~l~~~~~~~~tii~~tH~~~~~--~~~~d~i~~l~  211 (214)
T TIGR02673       176 ILDLLKRLNKRGTTVIVATHDLSLV--DRVAHRVIILD  211 (214)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEec
Confidence            9999988753356788889998764  46899999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.36  E-value=3.6e-13  Score=117.30  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=106.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc---
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA---  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~---  113 (212)
                      .+.+.+++|..    ...++++++....|.+++|+||||||||||+++|+++     |...+++..+..      .+   
T Consensus         6 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v   81 (353)
T TIGR03265         6 SIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV   81 (353)
T ss_pred             EEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            35555666631    1346778899999999999999999999999999987     434444322210      00   


Q ss_pred             -----ccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        114 -----YDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       114 -----~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                           +.+..                     .....+++.+|..-+       -+.|+.+|..|+..+..+|+  +++++
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP  161 (353)
T TIGR03265        82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP  161 (353)
T ss_pred             eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                 01110                     012233444443321       13467788899999999998  66888


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+++..++.+++.+++.. .....+++.+|.+.++  ..+||++++++
T Consensus       162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea--~~l~d~i~vl~  209 (353)
T TIGR03265       162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA--LSMADRIVVMN  209 (353)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            89999999999999988775 3355777779999875  57899999886

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.36  E-value=9e-13  Score=103.39  Aligned_cols=134  Identities=24%  Similarity=0.240  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCCchhHHHHHHHhC
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVGTRGNQVVRELFG  129 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~~~~~~~~~~~~g  129 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.+         -.|.+....      .+.
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~------~~~   89 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF------LFS   89 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch------hcc
Confidence            367778899999999999999999999999999987     333343322211         011111100      011


Q ss_pred             CccC---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138        130 EDIA---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW  204 (212)
Q Consensus       130 ~~~~---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~  204 (212)
                      ..+.   -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+... ...+++.+|.+.+.  .. ||+++
T Consensus        90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~--~~-~d~~~  165 (171)
T cd03228          90 GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTI--RD-ADRII  165 (171)
T ss_pred             chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHH--Hh-CCEEE
Confidence            1110   24567778889988999998  56889999999999999999987753 46788889998765  34 99998


Q ss_pred             EEE
Q psy17138        205 VTF  207 (212)
Q Consensus       205 ~v~  207 (212)
                      ++.
T Consensus       166 ~l~  168 (171)
T cd03228         166 VLD  168 (171)
T ss_pred             EEc
Confidence            875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.36  E-value=4.3e-13  Score=117.11  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=108.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc------ccc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG------HRA  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~------~~~  113 (212)
                      ..+++.+++|..    ...++++++....|.+++|+||||||||||+++|+++       |...++...+.      +.+
T Consensus         6 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i   81 (362)
T TIGR03258         6 IRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL   81 (362)
T ss_pred             EEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence            446677777742    2467888999999999999999999999999999986       33333322211      000


Q ss_pred             --------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 --------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 --------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                              +.+...                     ....+++.+|..-+       -+.|+.+|..|+..+..+|+  ++
T Consensus        82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                    011100                     12233444443321       13367788899999999998  66


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCC--CcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSES--HKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~--~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++..+..+.+.++++...  ...+++.+|.+.++  ..+||+++++.
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea--~~l~dri~vl~  213 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA--LTLADKAGIMK  213 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            8899999999999999999877632  46778889999886  47899999885

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.36  E-value=2.5e-12  Score=100.79  Aligned_cols=136  Identities=17%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc-c---------------------------ccC
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR-A---------------------------YDV  116 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~-~---------------------------~~~  116 (212)
                      +...+.+++++|+||||||||||+++++++     |...++....... .                           ..|
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P   98 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP   98 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence            345777999999999999999999999987     4445554432110 0                           011


Q ss_pred             C-------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-C
Q psy17138        117 G-------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-E  179 (212)
Q Consensus       117 ~-------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~  179 (212)
                      +       ....+......|..-+       -+.|+.+|..|++.+..+..  +++++-+.++|..+.++...+.+.- +
T Consensus        99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840          99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence            1       0122333334443221       14678899999987776644  5678888899999999999887765 5


Q ss_pred             CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        180 SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       180 ~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...++++.+|-..++  ..+.|++++++
T Consensus       179 ~~~TllmVTH~~~Da--~~ia~~~~fl~  204 (231)
T COG3840         179 RKMTLLMVTHHPEDA--ARIADRVVFLD  204 (231)
T ss_pred             hCCEEEEEeCCHHHH--HHhhhceEEEe
Confidence            566778889988775  57889999886

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.36  E-value=1.6e-12  Score=101.67  Aligned_cols=135  Identities=12%  Similarity=0.025  Sum_probs=93.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccccccCCchhHHHHHHHhCCccCCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRAYDVGTRGNQVVRELFGEDIALP  135 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~~~~~~~~~~~~~~~~g~~~~~~  135 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++.. .+   ..+.+.+.....+.+.......  -+
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~--LS   93 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDV--LS   93 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCC--CC
Confidence            56778899999999999999999999999999987     33333321 11   1111111112222221101111  25


Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+.   ...+++.+|.+..   ..+||++++++
T Consensus        94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~---~~~~d~i~~l~  161 (166)
T cd03223          94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL---WKFHDRVLDLD  161 (166)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH---HhhCCEEEEEc
Confidence            677788899999999998  568899999999999999888775   2567777888743   35899998874

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.36  E-value=4.6e-13  Score=112.72  Aligned_cols=122  Identities=18%  Similarity=0.181  Sum_probs=80.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~  153 (212)
                      ++||+|+|||||||+++.|+++    +..++.+|.+.+    ...   .+ ....|...+... ..+   + ..++++..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~----~~~---~~-r~~~g~~~~~p~-~~~---~-d~l~~~l~   67 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS----LDR---KG-RKETGITALDPR-ANN---F-DLMYEQLK   67 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc----CCH---HH-HHHhhccccccc-chh---H-HHHHHHHH
Confidence            5899999999999999999975    566788875432    111   11 122333222111 111   1 24556666


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~  212 (212)
                      .+...+.+.+|.+.+.......... .+.+++++|+++++ +.+++++||.+|+|++|+++
T Consensus        68 ~Lk~g~~i~~P~y~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~  128 (273)
T cd02026          68 ALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEV  128 (273)
T ss_pred             HHHCCCCcccccccccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhH
Confidence            7777778899988776644221111 44689999999854 66889999999999999863

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.35  E-value=6.4e-13  Score=115.99  Aligned_cols=141  Identities=23%  Similarity=0.190  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------------c-cc-------cCCch
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------------R-AY-------DVGTR  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------------~-~~-------~~~~~  119 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...+++..+..            . .|       .+...
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            56778899999999999999999999999999987     434444432210            0 01       11101


Q ss_pred             h---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 G---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                      .                     ...+++.+|.+.+       -+.|+.+|-.++..+..+|+  +++++...++|..++.
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~  167 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS  167 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            1                     1122333343221       13467788889999999998  5688899999999999


Q ss_pred             HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.++. .....+++.+|.+.++  ..+||+++++.
T Consensus       168 l~~~l~~l~~~~~~Tii~vTHd~~ea--~~~~drI~vl~  204 (363)
T TIGR01186       168 MQDELKKLQATLQKTIVFITHDLDEA--IRIGDRIVIMK  204 (363)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            999998775 4456788889999875  57899999885

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.35  E-value=1.9e-12  Score=104.63  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV  148 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v  148 (212)
                      ..++.+|+|+|+||||||||++.|.+.    ...+++.|...+..-..   ....   . ....+.....++...+...+
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~---~~~~---~-~~~~~~~~~~~~~~~l~~~l   75 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL---SFEE---R-VKTNYDHPDAFDHDLLIEHL   75 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC---CHHH---h-cccCccCcccccHHHHHHHH
Confidence            467999999999999999999999864    23455666532211000   0000   0 00001111122332222111


Q ss_pred             cCChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCCC
Q psy17138        149 FSNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~~  212 (212)
                          ..+.....+..|.+.........+. . .+..++++|++++++ .++.++||.+|+|++|.++
T Consensus        76 ----~~l~~~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~  138 (209)
T PRK05480         76 ----KALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDI  138 (209)
T ss_pred             ----HHHHcCCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhH
Confidence                1111112233444443332221111 1 345699999999997 6888999999999999863

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.35  E-value=1.1e-12  Score=106.62  Aligned_cols=141  Identities=16%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            + -.|.+       ..
T Consensus        19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   98 (221)
T TIGR02211        19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF   98 (221)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence            356778899999999999999999999999999986     33333321110            0 00100       00


Q ss_pred             h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                     ....+++.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++....
T Consensus        99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~  178 (221)
T TIGR02211        99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK  178 (221)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence            0                     01123334443211       12356678888888889988  668899999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.. .....+++.+|.+.+.   ..||+++++.
T Consensus       179 ~l~~~l~~~~~~~~~tii~~tH~~~~~---~~~d~v~~l~  215 (221)
T TIGR02211       179 IIFDLMLELNRELNTSFLVVTHDLELA---KKLDRVLEMK  215 (221)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH---hhcCEEEEEe
Confidence            9999998775 3356788889998764   3479999885

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=2e-12  Score=105.48  Aligned_cols=145  Identities=14%  Similarity=0.115  Sum_probs=96.8

Q ss_pred             ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cccccc-----CC
Q psy17138         62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GHRAYD-----VG  117 (212)
Q Consensus        62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~~~~~-----~~  117 (212)
                      ...+++++++...+|+.+||+|.||||||||+|+|++.     |-..++++..              ++++..     .+
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G  118 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG  118 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence            44677889999999999999999999999999999985     3333333321              111100     00


Q ss_pred             ------chhHHHHHH------HhCCccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCc
Q psy17138        118 ------TRGNQVVRE------LFGEDIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHK  182 (212)
Q Consensus       118 ------~~~~~~~~~------~~g~~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~  182 (212)
                            ...++.+++      ....++. -+.|+.-|..++-.+..+|+  ++++.-+.-++.+.+.-.+++.+...+..
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~  198 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK  198 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence                  011222222      1112221 13456667777767777887  45666677888888888888888754457


Q ss_pred             EEEEEeccccccccccccCeEEEEEe
Q psy17138        183 VIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       183 ~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ++++-+|.+-.  ++++||+++++..
T Consensus       199 tiv~VSHd~~~--I~~~Cd~~i~l~~  222 (249)
T COG1134         199 TIVLVSHDLGA--IKQYCDRAIWLEH  222 (249)
T ss_pred             EEEEEECCHHH--HHHhcCeeEEEeC
Confidence            88888999865  4689999999864

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.35  E-value=1.4e-12  Score=106.93  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=102.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~  112 (212)
                      +.+.+++|.........++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +.
T Consensus         4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (233)
T cd03258           4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRR   83 (233)
T ss_pred             EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            444555553211011356778899999999999999999999999999987     43444322211           00


Q ss_pred             -cccCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        113 -AYDVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 -~~~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                       .|.+.       ...                     ....++.+|..-.       -+.|+.+|-.++..+..+|+  +
T Consensus        84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  163 (233)
T cd03258          84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL  163 (233)
T ss_pred             eEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence             01111       011                     1122333333211       12356678888888888888  6


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++.....+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~--~~~~d~i~~l~  215 (233)
T cd03258         164 CDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV--KRICDRVAVME  215 (233)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            688999999999999999998775 3356788889988653  56899998874

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.35  E-value=3e-13  Score=106.80  Aligned_cols=139  Identities=20%  Similarity=0.169  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------ccccCCch-hHH--HHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------RAYDVGTR-GNQ--VVR  125 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~~~~~~~~-~~~--~~~  125 (212)
                      .++++++...+|.+++|+|+||||||||+++|.++     |...++...+..           -.|.+... .+.  .+.
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   94 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVL   94 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHH
Confidence            56778889999999999999999999999999986     333333322211           01111110 000  000


Q ss_pred             HHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC-CcEEEEEeccccccccccccCe
Q psy17138        126 ELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHE  202 (212)
Q Consensus       126 ~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~  202 (212)
                      +.....  -+.|+.+|-.++..+.++|+  +++++.+.+++.....+.+.+.+.... ...+++.+|.+.+.  .++||+
T Consensus        95 ~~l~~~--lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~  170 (178)
T cd03229          95 ENIALG--LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA--ARLADR  170 (178)
T ss_pred             Hheeec--CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCE
Confidence            000000  24567788889999999998  568899999999999999999877633 56788889988664  468999


Q ss_pred             EEEEE
Q psy17138        203 IWVTF  207 (212)
Q Consensus       203 v~~v~  207 (212)
                      +++++
T Consensus       171 i~~l~  175 (178)
T cd03229         171 VVVLR  175 (178)
T ss_pred             EEEEe
Confidence            99875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=9.6e-13  Score=109.71  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HRA  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~~  113 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.          ...
T Consensus         4 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~   79 (255)
T PRK11248          4 ISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE   79 (255)
T ss_pred             EEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence            3444555531    1356778899999999999999999999999999987     33333321110          000


Q ss_pred             -ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        114 -YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       114 -~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                       +.+...                     ....+++.+|....       -+.|+.+|..++..+..+|+  +++++.+.+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L  159 (255)
T PRK11248         80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL  159 (255)
T ss_pred             ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence             000000                     11233344443211       12366778888889999988  568899999


Q ss_pred             hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.....+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~--~~~~d~i~~l~  203 (255)
T PRK11248        160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEA--VFMATELVLLS  203 (255)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            9999999999998763 3356777779998764  57899999986

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.35  E-value=5e-13  Score=116.37  Aligned_cols=153  Identities=13%  Similarity=0.107  Sum_probs=106.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-c--
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-Y--  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~--  114 (212)
                      +++.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+..      .+ |  
T Consensus         5 i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          5 IANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            5566666632    2367778899999999999999999999999999987     433444322210      00 0  


Q ss_pred             -----cCCch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        115 -----DVGTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       115 -----~~~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                           .+...                         ...++++.+|..-+       -+.|+.+|..|+..+..+|+  ++
T Consensus        81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL  160 (353)
T PRK10851         81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL  160 (353)
T ss_pred             cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                 11000                         11223444443211       13467788899999999998  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++..+..+.+.+.++. .....+++.+|.+.++  ..+||++++++
T Consensus       161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea--~~~~Dri~vl~  211 (353)
T PRK10851        161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA--MEVADRVVVMS  211 (353)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88899999999999999998876 3356778889999875  47899999886

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.34  E-value=8.4e-13  Score=106.89  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------ccccc---------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GHRAY---------------  114 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~~~~---------------  114 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...++...+          ..+..               
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~   93 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLM   93 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHh
Confidence            56778899999999999999999999999999986     3223332110          00000               


Q ss_pred             --cC--------Cc---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        115 --DV--------GT---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       115 --~~--------~~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                        ..        ..   .....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.++|.....+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  173 (213)
T cd03235          94 GLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE  173 (213)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence              00        00   011223344443211       13356778888888888888  5688999999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.......+++.+|.+.+.  .++||+++++.
T Consensus       174 ~l~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~  206 (213)
T cd03235         174 LLRELRREGMTILVVTHDLGLV--LEYFDRVLLLN  206 (213)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEc
Confidence            9987753456778889998764  46899999875

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.34  E-value=1e-12  Score=108.26  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccC
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDV  116 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~  116 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.      + -.|.+
T Consensus         5 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           5 VRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence            4455555531    1357778899999999999999999999999999987     32333321110      0 00100


Q ss_pred             -------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        117 -------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       117 -------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                             ...                         ....+++.+|..-.       -+.|+.+|..++..+..+|+  ++
T Consensus        81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  160 (239)
T cd03296          81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL  160 (239)
T ss_pred             cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                   000                         01222344443211       13467778889988888888  66


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.  ..+||++++++
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~--~~~~d~i~~l~  211 (239)
T cd03296         161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA--LEVADRVVVMN  211 (239)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            89999999999999999998775 3356788889998653  46899999885

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.34  E-value=1.3e-12  Score=105.66  Aligned_cols=142  Identities=18%  Similarity=0.135  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------ccccCC-------ch-----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------RAYDVG-------TR-----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~~~~~~-------~~-----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+..       -.|.+.       ..     
T Consensus        14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l   93 (213)
T cd03301          14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI   93 (213)
T ss_pred             eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence            356788899999999999999999999999999986     323333211100       001110       00     


Q ss_pred             ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                      ....+.+.+|....       -+.|+.+|-.++..+..+|+  +++++.+.++|...+.+.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03301          94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL  173 (213)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence                            01122334443211       13456677788888889888  668899999999999999999


Q ss_pred             Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~  205 (213)
T cd03301         174 KRLQQRLGTTTIYVTHDQVEA--MTMADRIAVMN  205 (213)
T ss_pred             HHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence            8775 3356777889988654  46899998874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.8e-12  Score=109.53  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=109.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----ee------eeCCcc--------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----GL------INCDQL--------  109 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----~v------i~~D~i--------  109 (212)
                      .|++.+..|.......++++++++...+|+++||+|.|||||||+++.+.++-.    .+      +++..+        
T Consensus         3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~   82 (316)
T COG0444           3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL   82 (316)
T ss_pred             eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHH
Confidence            366777788766557799999999999999999999999999999999998632    12      222211        


Q ss_pred             ----cccc-c---------cCCchh-----------------------HHHHHHHhCCcc----------CCCCCccchH
Q psy17138        110 ----GHRA-Y---------DVGTRG-----------------------NQVVRELFGEDI----------ALPDGSIDRK  142 (212)
Q Consensus       110 ----~~~~-~---------~~~~~~-----------------------~~~~~~~~g~~~----------~~~~~~~~r~  142 (212)
                          ++++ +         .|-...                       ..++.+..|.+-          .-+.|+.+|.
T Consensus        83 ~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV  162 (316)
T COG0444          83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV  162 (316)
T ss_pred             HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence                0000 0         000000                       001112222221          1146888999


Q ss_pred             hHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        143 KLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       143 ~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .++..+..+|+++  ++++..++..+...+.+.+++++ .....+++=+|.|--.  ..+||++.++++
T Consensus       163 ~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv--a~~aDri~VMYa  229 (316)
T COG0444         163 MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV--AEIADRVAVMYA  229 (316)
T ss_pred             HHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcceEEEEEC
Confidence            9998888999854  78899999999999999998887 3344444448988643  479999999875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.34  E-value=7.8e-13  Score=110.45  Aligned_cols=155  Identities=17%  Similarity=0.120  Sum_probs=104.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GH  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~  111 (212)
                      ..+.+..++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+          ..
T Consensus        13 l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q   88 (257)
T PRK11247         13 LLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ   88 (257)
T ss_pred             EEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence            446666666631    1356788999999999999999999999999999986     3223322111          00


Q ss_pred             cc-ccCC---------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        112 RA-YDVG---------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       112 ~~-~~~~---------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      +. +.+.               ......+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++..
T Consensus        89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~  168 (257)
T PRK11247         89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT  168 (257)
T ss_pred             CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence            00 0000               0112233444543211       13356778888888989988  5688999999999


Q ss_pred             HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       169 ~~~l~~~L~~~~~~~~~tviivsHd~~~~--~~~~d~i~~l~  208 (257)
T PRK11247        169 RIEMQDLIESLWQQHGFTVLLVTHDVSEA--VAMADRVLLIE  208 (257)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999999888764 3356778889998763  46899998875

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.34  E-value=6e-13  Score=116.56  Aligned_cols=154  Identities=15%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      .+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            
T Consensus         5 ~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v   80 (369)
T PRK11000          5 TLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV   80 (369)
T ss_pred             EEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence            35555666631    1356788899999999999999999999999999987     33333322110            


Q ss_pred             -ccc-ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        111 -HRA-YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       111 -~~~-~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                       .+. +.+...                     ....+++.+|..-+       -+.|+.+|-.|+..+..+|+  +++++
T Consensus        81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP  160 (369)
T PRK11000         81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP  160 (369)
T ss_pred             eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence             000 001100                     11223344454321       13467788899999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~--~~~~d~i~vl~  208 (369)
T PRK11000        161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA--MTLADKIVVLD  208 (369)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999999999888775 3355777779998764  47899999885

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.34  E-value=1.9e-12  Score=106.38  Aligned_cols=141  Identities=14%  Similarity=0.128  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------h---
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------R---  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~---  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         + -.|.+..       .   
T Consensus        15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~   94 (236)
T cd03219          15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE   94 (236)
T ss_pred             EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence            56778899999999999999999999999999986     33333321110         0 0010000       0   


Q ss_pred             ----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        120 ----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       120 ----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                                                  .....++.+|....       -+.|+.+|..++..+..+|+  +++++.+.+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L  174 (236)
T cd03219          95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL  174 (236)
T ss_pred             HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                                        01222333443211       12356677888888888888  568899999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       175 D~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~--~~~~d~i~~l~  217 (236)
T cd03219         175 NPEETEELAELIRELRERGITVLLVEHDMDVV--MSLADRVTVLD  217 (236)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence            99999999999987753456778889998764  46899999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.34  E-value=2.6e-12  Score=106.67  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---cccc-cCCch-----------------hHHH
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---HRAY-DVGTR-----------------GNQV  123 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---~~~~-~~~~~-----------------~~~~  123 (212)
                      +....+|++++|+|+||||||||+++|+++     |...++...++   .... .....                 ....
T Consensus        19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~   98 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE   98 (246)
T ss_pred             cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence            345678999999999999999999999986     43333332121   1100 00000                 0122


Q ss_pred             HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138        124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS  193 (212)
Q Consensus       124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e  193 (212)
                      +++.+|....       -+.|+.+|..++..+..+|+  +++++.+.+++..+..+.+.+++.. .....+++.+|.+.+
T Consensus        99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~  178 (246)
T cd03237          99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM  178 (246)
T ss_pred             HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            3333433211       13467788889999999998  6689999999999999999888775 335678888999876


Q ss_pred             cccccccCeEEEEE
Q psy17138        194 AKWQDQVHEIWVTF  207 (212)
Q Consensus       194 ~~~~~~~d~v~~v~  207 (212)
                      .  ..+||++|++.
T Consensus       179 ~--~~~~d~i~~l~  190 (246)
T cd03237         179 I--DYLADRLIVFE  190 (246)
T ss_pred             H--HHhCCEEEEEc
Confidence            4  46899999874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=7.7e-13  Score=114.09  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=107.1

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC---------eeeeCCcccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA---------GLINCDQLGH--------  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~---------~vi~~D~i~~--------  111 (212)
                      +++.++.|...+....+++++++...+|+++||+|+||||||||+++|.++-.         ..++...+..        
T Consensus         6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~   85 (326)
T PRK11022          6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN   85 (326)
T ss_pred             EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence            55555666432222457889999999999999999999999999999998632         1333322110        


Q ss_pred             ----c-cccCCc---------h----------------------hHHHHHHHhCCcc----C------CCCCccchHhHH
Q psy17138        112 ----R-AYDVGT---------R----------------------GNQVVRELFGEDI----A------LPDGSIDRKKLG  145 (212)
Q Consensus       112 ----~-~~~~~~---------~----------------------~~~~~~~~~g~~~----~------~~~~~~~r~~l~  145 (212)
                          . .|.++.         .                      ....+++.+|..-    +      -+.|+.+|..++
T Consensus        86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA  165 (326)
T PRK11022         86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA  165 (326)
T ss_pred             HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence                0 011100         0                      0112233344321    0      134677888999


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ..+..+|+  +++++...+++.....+.+.+.++. .....+++-+|.+..+  ..+||++++++.
T Consensus       166 rAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~--~~~adri~vm~~  229 (326)
T PRK11022        166 MAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV--AEAAHKIIVMYA  229 (326)
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence            99999998  5588999999999999999998876 3355677779998764  468999998863

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=1.3e-12  Score=110.82  Aligned_cols=142  Identities=18%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc-cccCC--------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR-AYDVG--------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~-~~~~~--------~~  119 (212)
                      ..++++++...+|+++||+|+||||||||+++|+++     |...++...+.          +. .|.+.        ..
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  100 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET  100 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence            467888999999999999999999999999999987     43334332111          00 01110        00


Q ss_pred             ---------------------hHHHHHHHhCCc---cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH
Q psy17138        120 ---------------------GNQVVRELFGED---IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL  167 (212)
Q Consensus       120 ---------------------~~~~~~~~~g~~---~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~  167 (212)
                                           .....++.+|..   ..+      +.|+.+|..|+..+..+|+  +++++.+.++|...
T Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~  180 (287)
T PRK13637        101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR  180 (287)
T ss_pred             HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence                                 112334555553   111      2356778889999999998  56889999999999


Q ss_pred             HHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        168 AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       168 ~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~drv~~l~  219 (287)
T PRK13637        181 DEILNKIKELHKEYNMTIILVSHSMEDV--AKLADRIIVMN  219 (287)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999998875 3356788889998764  46899999875

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=1.5e-12  Score=109.39  Aligned_cols=153  Identities=17%  Similarity=0.121  Sum_probs=102.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-R  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~  112 (212)
                      +++.+++|.  +  ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.          + -
T Consensus         4 ~~~l~~~~~--~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          4 TSDLWFRYQ--D--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             EEEEEEEcC--C--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            455555553  1  2467888999999999999999999999999999986     43334322210          0 0


Q ss_pred             cccCCc--------hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        113 AYDVGT--------RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~~~~~~--------~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      .|.+..        ..                     .....+.+|...+       -+.|+.+|..++..+..+|+  +
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll  159 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL  159 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            011110        00                     0112233332211       13466778889988999988  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++.....+.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       160 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~--~~~~d~i~~l~  210 (271)
T PRK13638        160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI--YEISDAVYVLR  210 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            6889999999999999999887753345777779998764  46899998875

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.33  E-value=2.2e-12  Score=104.33  Aligned_cols=141  Identities=16%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-ccccCC-------ch--
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-RAYDVG-------TR--  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~~~~~~-------~~--  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.          + -.|.+.       ..  
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   94 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL   94 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence            56778899999999999999999999999999986     33333321110          0 001110       00  


Q ss_pred             --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                                          .....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l  174 (213)
T cd03262          95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV  174 (213)
T ss_pred             HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence                                01122333443211       12356678888888999998  56889999999999999


Q ss_pred             HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++.......+++.+|.+.+.  .++||+++++.
T Consensus       175 ~~~l~~~~~~~~tvi~~sh~~~~~--~~~~d~i~~l~  209 (213)
T cd03262         175 LDVMKDLAEEGMTMVVVTHEMGFA--REVADRVIFMD  209 (213)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            999988753345777779988764  47899999886

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.33  E-value=5.7e-13  Score=108.50  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----ccccc---
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----HRAYD---  115 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~~~~~---  115 (212)
                      .+++.+++|+    -+.++++++++.++|+++||+|||||||||+.+++.++     |...+++..+.    |+...   
T Consensus         6 ~v~~l~k~FG----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           6 EVRGLSKRFG----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             eeccceeecC----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            4678888897    34899999999999999999999999999999999975     55555555441    11000   


Q ss_pred             ----------CCchh---------------------------------HHHHHHHhCCccCC-------CCCccchHhHH
Q psy17138        116 ----------VGTRG---------------------------------NQVVRELFGEDIAL-------PDGSIDRKKLG  145 (212)
Q Consensus       116 ----------~~~~~---------------------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~  145 (212)
                                ++-..                                 -..+++..|..-..       +.|...+-.++
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA  161 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA  161 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence                      00000                                 01122223322111       12444566788


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ..+..+|.  +++++-+.+.|.-.+++.+.|++.+. ....+++-.|.|.-  ..++||++++++-
T Consensus       162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~--Vm~l~dri~Vl~~  225 (250)
T COG0411         162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL--VMGLADRIVVLNY  225 (250)
T ss_pred             HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH--HhhhccEEEeccC
Confidence            89999998  56888889999999999999999873 33444444666643  2469999999864

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.33  E-value=1.3e-12  Score=104.35  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=95.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------CeeeeCCcc----cc-ccccCC-------chhHHHHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLINCDQL----GH-RAYDVG-------TRGNQVVR  125 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~~D~i----~~-~~~~~~-------~~~~~~~~  125 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++.       ...++...+    .+ -.|.+.       ....+.+.
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR  101 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence            567788899999999999999999999999999752       122332121    01 111111       11222221


Q ss_pred             H--HhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccC
Q psy17138        126 E--LFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVH  201 (212)
Q Consensus       126 ~--~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d  201 (212)
                      .  ... .  -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+++.......+++.+|.+.+ .+.++||
T Consensus       102 ~~~~~~-~--LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~-~~~~~~d  177 (192)
T cd03232         102 FSALLR-G--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA-SIFEKFD  177 (192)
T ss_pred             HHHHHh-c--CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH-HHHhhCC
Confidence            1  011 2  25677888899999999998  5688899999999999999998775335677888998752 1246899


Q ss_pred             eEEEEE
Q psy17138        202 EIWVTF  207 (212)
Q Consensus       202 ~v~~v~  207 (212)
                      +++++.
T Consensus       178 ~i~~l~  183 (192)
T cd03232         178 RLLLLK  183 (192)
T ss_pred             EEEEEc
Confidence            998875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.33  E-value=2.5e-12  Score=116.50  Aligned_cols=154  Identities=19%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-cc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RA  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~  113 (212)
                      .+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.
T Consensus         5 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~   80 (490)
T PRK10938          5 QISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS   80 (490)
T ss_pred             EEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence            35566666642    1367889999999999999999999999999999986     33333221110        0 00


Q ss_pred             ccC---------------Cc-------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 YDV---------------GT-------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 ~~~---------------~~-------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      |.+               ..             .....++..+|....       -+.|+.+|..++..+..+|+  +++
T Consensus        81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  160 (490)
T PRK10938         81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD  160 (490)
T ss_pred             eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            000               00             011233444554211       13467788899999999998  668


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|.....+.+.+.++......+++-+|.+.+.  .++||+++++.
T Consensus       161 EPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~--~~~~d~v~~l~  209 (490)
T PRK10938        161 EPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI--PDFVQFAGVLA  209 (490)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence            99999999999999999988763356777779998664  57899999885

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4e-12  Score=113.32  Aligned_cols=156  Identities=18%  Similarity=0.180  Sum_probs=105.6

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC------Cc--cccc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC------DQ--LGHR  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~------D~--i~~~  112 (212)
                      ...+.+++++|.  +...+++++.++...+|+.|+|+|+|||||||++..|.+.     |-..+++      +.  +.+.
T Consensus       336 ~l~~~~vsF~y~--~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~  413 (573)
T COG4987         336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET  413 (573)
T ss_pred             eeeeccceeecC--CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence            445667777665  4466788999999999999999999999999999999963     2222222      21  1111


Q ss_pred             c-----------------c---cCC--chh---------HHHHHHHh--------CCccC-CCCCccchHhHHHHhcCCh
Q psy17138        113 A-----------------Y---DVG--TRG---------NQVVRELF--------GEDIA-LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 ~-----------------~---~~~--~~~---------~~~~~~~~--------g~~~~-~~~~~~~r~~l~~~vf~~~  152 (212)
                      +                 +   .++  .+.         .+..++..        |+... -+.|+.+|-.|++++.+|.
T Consensus       414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da  493 (573)
T COG4987         414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA  493 (573)
T ss_pred             HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence            0                 0   000  000         11111111        11110 1456778889999999987


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .  ++++++..++|...+.+.+.+.+.. .++.+++-+|-+...   +.||++++++
T Consensus       494 pl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~l---e~~drIivl~  546 (573)
T COG4987         494 PLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL---ERMDRIIVLD  546 (573)
T ss_pred             CeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccH---hhcCEEEEEE
Confidence            7  6789999999999999998887664 456777779988764   5899999986

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.33  E-value=2.5e-13  Score=107.77  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=114.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA---------  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~---------  113 (212)
                      .+.+..++|...    +.++++++...+|+++||.||||+||||..-++.++     |-..++..++.+..         
T Consensus         6 ~a~~l~K~y~kr----~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           6 VAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             EehhhhHhhCCe----eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            345566666532    677889999999999999999999999999999886     55666665553221         


Q ss_pred             -ccCCch------------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        114 -YDVGTR------------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       114 -~~~~~~------------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                       |.|+..                              ..+.+++.|...-+       -+.|...|..++..+..+|.  
T Consensus        82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi  161 (243)
T COG1137          82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI  161 (243)
T ss_pred             ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence             333211                              12234444443221       14567778899999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +++++-+.++|....+++..|..++...-=|++.-|..-|+  .++|||..++..
T Consensus       162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt--L~i~dRaYIi~~  214 (243)
T COG1137         162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET--LDICDRAYIISD  214 (243)
T ss_pred             EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH--HhhhheEEEEec
Confidence            67888889999999999999999985556778888999886  689999988864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.33  E-value=1.4e-12  Score=106.12  Aligned_cols=142  Identities=18%  Similarity=0.180  Sum_probs=96.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------hh-
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------RG-  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~~-  120 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         + -.|.+..       .. 
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (222)
T cd03224          14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE   93 (222)
T ss_pred             eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence            356778899999999999999999999999999986     33333321110         0 0111110       00 


Q ss_pred             ------------------HHHHHHHh-CCc-cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        121 ------------------NQVVRELF-GED-IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       121 ------------------~~~~~~~~-g~~-~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                                        ...+.+.+ +.. ..      -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  173 (222)
T cd03224          94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE  173 (222)
T ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence                              11222223 111 00      13456677888888888887  5688899999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  206 (222)
T cd03224         174 AIRELRDEGVTILLVEQNARFA--LEIADRAYVLE  206 (222)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHH--HHhccEEEEee
Confidence            9987753456788889998653  47899999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.6e-12  Score=112.31  Aligned_cols=157  Identities=18%  Similarity=0.155  Sum_probs=105.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCccc---------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQLG---------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i~---------  110 (212)
                      +.+.++.|...+.....++++++...+|+++||+|+||||||||+++|.++.         ...++...+.         
T Consensus         6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   85 (330)
T PRK15093          6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK   85 (330)
T ss_pred             EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence            4555555533222345788899999999999999999999999999999873         1223321110         


Q ss_pred             ---ccc-ccCCc---------h---------------------------hHHHHHHHhCCcc----C------CCCCccc
Q psy17138        111 ---HRA-YDVGT---------R---------------------------GNQVVRELFGEDI----A------LPDGSID  140 (212)
Q Consensus       111 ---~~~-~~~~~---------~---------------------------~~~~~~~~~g~~~----~------~~~~~~~  140 (212)
                         +.+ |.++.         .                           ....+++.+|..-    +      -+.|+.+
T Consensus        86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q  165 (330)
T PRK15093         86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ  165 (330)
T ss_pred             HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence               001 11110         0                           0112233334321    0      1346778


Q ss_pred             hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |..++..+..+|+  +++++.+.+++.....+.+.++++.. ....+++-+|.+...  ..+||++++++
T Consensus       166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v--~~~~dri~vm~  233 (330)
T PRK15093        166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML--SQWADKINVLY  233 (330)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            8889999999998  55888999999999999999988763 355777779998765  47899999885

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.32  E-value=2e-12  Score=106.72  Aligned_cols=141  Identities=23%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCC-------ch----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVG-------TR----  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~-------~~----  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+..         -.|.+.       ..    
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   95 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN   95 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence            56778899999999999999999999999999986     433443322110         001111       00    


Q ss_pred             -----------------hHHHHHHHhCCcc---CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138        120 -----------------GNQVVRELFGEDI---AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK  171 (212)
Q Consensus       120 -----------------~~~~~~~~~g~~~---~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~  171 (212)
                                       ....+++.+|...   .+      +.|+.+|..++..+..+|+  +++++.+.+++.....+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  175 (242)
T cd03295          96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ  175 (242)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence                             1123344455431   11      2356678888888889988  568899999999999999


Q ss_pred             HHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        172 EEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       172 ~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       176 ~~L~~~~~~~g~tvii~sH~~~~~--~~~~d~i~~l~  210 (242)
T cd03295         176 EEFKRLQQELGKTIVFVTHDIDEA--FRLADRIAIMK  210 (242)
T ss_pred             HHHHHHHHHcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9988775 3356788889988653  47899998875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.32  E-value=1.7e-12  Score=106.14  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=102.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      .+.+.+++|.........++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            
T Consensus         8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   87 (228)
T PRK10584          8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA   87 (228)
T ss_pred             EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHh
Confidence            3555555553211112356778899999999999999999999999999987     33333321110            


Q ss_pred             c-cccc-------CCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        111 H-RAYD-------VGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ~-~~~~-------~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      . -.|.       +....                     ....++.+|..-.       -+.|+.+|..++..+..+|+ 
T Consensus        88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l  167 (228)
T PRK10584         88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV  167 (228)
T ss_pred             heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            0 0010       10000                     1122333343211       12366778888888999988 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.   ..||+++++.
T Consensus       168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~---~~~d~i~~l~  220 (228)
T PRK10584        168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA---ARCDRRLRLV  220 (228)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence             5688999999999999999998775 3356777779998764   3599998874

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.32  E-value=1.8e-12  Score=104.67  Aligned_cols=141  Identities=15%  Similarity=0.186  Sum_probs=96.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----c-ccccC-------Cch--------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----H-RAYDV-------GTR--------  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~-~~~~~-------~~~--------  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.    + -.|.+       ...        
T Consensus        15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   94 (210)
T cd03269          15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL   94 (210)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence            56778889999999999999999999999999986     32233322110    0 00100       000        


Q ss_pred             -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                                   ...+.++.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~  174 (210)
T cd03269          95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL  174 (210)
T ss_pred             HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                         11223334443211       13356677788888888888  568899999999999999998876


Q ss_pred             cCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        178 SESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       178 ~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ......+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~~~~~tii~~sH~~~~~--~~~~d~i~~l~  202 (210)
T cd03269         175 ARAGKTVILSTHQMELV--EELCDRVLLLN  202 (210)
T ss_pred             HHCCCEEEEECCCHHHH--HHhhhEEEEEe
Confidence            53356788889998763  46899998875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.32  E-value=7.4e-13  Score=116.13  Aligned_cols=155  Identities=14%  Similarity=0.094  Sum_probs=106.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------  111 (212)
                      ..+++.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+..          
T Consensus        15 L~l~~l~~~~~~----~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~   90 (375)
T PRK09452         15 VELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT   90 (375)
T ss_pred             EEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            346666666642    1356778899999999999999999999999999987     333444332210          


Q ss_pred             ---c-cccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        112 ---R-AYDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       112 ---~-~~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                         + .+.+...                     ....+++.+|..-+       -+.|+.+|..|+..+..+|+  ++++
T Consensus        91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE  170 (375)
T PRK09452         91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE  170 (375)
T ss_pred             EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence               0 0111100                     11223344443321       13467788899999999998  5688


Q ss_pred             HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +...+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea--~~laDri~vl~  219 (375)
T PRK09452        171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA--LTMSDRIVVMR  219 (375)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            888999999999999998775 3356777779999875  57899999875

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.32  E-value=3.4e-12  Score=103.63  Aligned_cols=156  Identities=13%  Similarity=0.039  Sum_probs=104.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV  116 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~  116 (212)
                      .+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.     + -.|.+
T Consensus        13 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~   88 (214)
T PRK13543         13 AAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG   88 (214)
T ss_pred             EEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence            35566665532    1356788899999999999999999999999999986     33333322111     0 00110


Q ss_pred             C-------ch------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        117 G-------TR------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       117 ~-------~~------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                      .       ..                  ...+....+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+
T Consensus        89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L  168 (214)
T PRK13543         89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL  168 (214)
T ss_pred             cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            0       00                  11223333442211       12356677788888888988  568889999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      ++...+.+.+.+.+.......+++-+|.+.+.  .++||++|.+.+.
T Consensus       169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~~~i~~l~~~  213 (214)
T PRK13543        169 DLEGITLVNRMISAHLRGGGAALVTTHGAYAA--PPVRTRMLTLEAA  213 (214)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecChhhh--hhhcceEEEEeec
Confidence            99999999999877653345777789998764  5799999998864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.32  E-value=2.1e-12  Score=104.16  Aligned_cols=142  Identities=16%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCC-------ch-----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVG-------TR-----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~-------~~-----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.      + -.|.+.       ..     
T Consensus        14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   93 (208)
T cd03268          14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL   93 (208)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence            366778899999999999999999999999999986     33333332211      0 001111       00     


Q ss_pred             ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                  .....++.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  173 (208)
T cd03268          94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR  173 (208)
T ss_pred             HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence                        11222334443211       13466677788888888888  6688999999999999999888765


Q ss_pred             CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 ~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .....+++.+|.+.+.  ..+||+++++.
T Consensus       174 ~~~~tii~~tH~~~~~--~~~~d~v~~l~  200 (208)
T cd03268         174 DQGITVLISSHLLSEI--QKVADRIGIIN  200 (208)
T ss_pred             HCCCEEEEEcCCHHHH--HHhcCEEEEEE
Confidence            3346777779998764  46899999875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.32  E-value=2.7e-12  Score=104.79  Aligned_cols=157  Identities=16%  Similarity=0.144  Sum_probs=102.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------  109 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------  109 (212)
                      +++.+++|.........++++++...+|++++|+|+||||||||+++|+++     |...++...+              
T Consensus         4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (228)
T cd03257           4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE   83 (228)
T ss_pred             EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhcc
Confidence            444555553211012356788999999999999999999999999999986     3223322111              


Q ss_pred             ----cccc---ccCCc-------------------hhH----HHHHHHhCCc--cCC------CCCccchHhHHHHhcCC
Q psy17138        110 ----GHRA---YDVGT-------------------RGN----QVVRELFGED--IAL------PDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       110 ----~~~~---~~~~~-------------------~~~----~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~  151 (212)
                          ..+.   +.+..                   ...    ......++..  ..+      +.|+.+|-.++..+..+
T Consensus        84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~  163 (228)
T cd03257          84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN  163 (228)
T ss_pred             EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcC
Confidence                0000   00000                   000    1223344432  111      23566788888888898


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++.+.+++.....+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~  220 (228)
T cd03257         164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV--AKIADRVAVMY  220 (228)
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEe
Confidence            88  6688999999999999999998775 3256788889998764  46899999875

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.32  E-value=2.9e-12  Score=106.22  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------------  110 (212)
                      +++.+++|.  +  ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.             
T Consensus         6 ~~~l~~~~~--~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          6 VKNLVKKFH--G--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             EeceEEEEC--C--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            445555553  1  1367888999999999999999999999999999986     32233221110             


Q ss_pred             ---cc-ccc-------CCchh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138        111 ---HR-AYD-------VGTRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       111 ---~~-~~~-------~~~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~  150 (212)
                         .. .|.       +....                      ....++.+|....       -+.|+.+|-.++..+..
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~  161 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM  161 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence               00 010       10001                      1122233343211       12356778888888888


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|+  +++++.+.+++...+.+.+.+.++......+++.+|.+.+.  .++||+++++.
T Consensus       162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~--~~~~d~i~~l~  218 (250)
T PRK11264        162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA--RDVADRAIFMD  218 (250)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            988  56889999999999999998887753355777779998663  57899999885

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.31  E-value=5.5e-12  Score=106.28  Aligned_cols=141  Identities=23%  Similarity=0.204  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc--------------------ccCCc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA--------------------YDVGT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~--------------------~~~~~  118 (212)
                      -.+++.++....|+++.|.|-||||||||.|++++|     |-..++..++..-.                    +.|..
T Consensus        42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            456678999999999999999999999999999987     55556655442110                    11110


Q ss_pred             h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                     ...+.++..|..-+       -+.|+.+|.-|++.+-.||+  ++++.-+.++|.++.
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence            0                     11122233333222       14678889999999999998  557777889999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ++++.+.+++ .-.+++++-+|.|.||  .++-|++.++
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDLdEA--lriG~rIaim  238 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDLDEA--LRIGDRIAIM  238 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHH--HhccceEEEe
Confidence            9999998887 4456666669999997  4677877664

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.31  E-value=2.8e-12  Score=103.31  Aligned_cols=158  Identities=11%  Similarity=0.016  Sum_probs=100.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-------c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-------H-  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-------~-  111 (212)
                      .+++.++.+...+.....++++++...+|++++|+|+||||||||+++|+++-.        ..++...+.       + 
T Consensus         5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   84 (202)
T cd03233           5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE   84 (202)
T ss_pred             EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcce
Confidence            355555666543233356777889999999999999999999999999998632        223221111       0 


Q ss_pred             ccccCC-------chhHHHHHHH--h-CC-ccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        112 RAYDVG-------TRGNQVVREL--F-GE-DIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       112 ~~~~~~-------~~~~~~~~~~--~-g~-~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                      -.|.+.       ....+.+...  . .. ... -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+.
T Consensus        85 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  164 (202)
T cd03233          85 IIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM  164 (202)
T ss_pred             EEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            112111       1122222110  0 11 110 13467778889999999998  568899999999999999999887


Q ss_pred             c-C-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        178 S-E-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       178 ~-~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      . . +..++++..|.+.+.  .++||+++++.
T Consensus       165 ~~~~~~t~ii~~~h~~~~~--~~~~d~i~~l~  194 (202)
T cd03233         165 ADVLKTTTFVSLYQASDEI--YDLFDKVLVLY  194 (202)
T ss_pred             HHhCCCEEEEEEcCCHHHH--HHhCCeEEEEE
Confidence            5 3 233455555554342  46899999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1e-12  Score=115.41  Aligned_cols=155  Identities=14%  Similarity=0.070  Sum_probs=106.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-Y  114 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~  114 (212)
                      ..+++.+++|..    ...++++++...+|.+++|+||||||||||+++|+++     |...++...+..      .+ |
T Consensus        20 l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         20 LEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             EEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            446666666631    1356778899999999999999999999999999987     434444332210      00 0


Q ss_pred             -------cCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        115 -------DVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       115 -------~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                             .+...                     ...++++.+|..-+       -+.|+.+|-.|+..+..+|+  ++++
T Consensus        96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE  175 (377)
T PRK11607         96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE  175 (377)
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence                   11100                     11233344444321       13467788899999999998  5688


Q ss_pred             HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+-+++..+..+.+.+.++. .....+++.+|.+.++  ..+||+++++.
T Consensus       176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~laDri~vl~  224 (377)
T PRK11607        176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA--MTMAGRIAIMN  224 (377)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEe
Confidence            888999999999988776664 3346777779998875  47999999885

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.31  E-value=2e-12  Score=104.68  Aligned_cols=142  Identities=13%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCCc-------h
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVGT-------R  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~~-------~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           + -.|.++.       .
T Consensus        15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   94 (214)
T cd03292          15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN   94 (214)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence            367778899999999999999999999999999987     33333321110           0 0011100       0


Q ss_pred             ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                           ......+.+|....       -+.|+.+|-.++..+..+|+  +++++.+.++|...+.
T Consensus        95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  174 (214)
T cd03292          95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE  174 (214)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence                                 01122333343211       12356677888888889988  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.++++......+++.+|.+.+.  .++||+++++.
T Consensus       175 ~~~~l~~~~~~~~tiiivtH~~~~~--~~~~d~i~~l~  210 (214)
T cd03292         175 IMNLLKKINKAGTTVVVATHAKELV--DTTRHRVIALE  210 (214)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            9999988753356788889988654  46899999885

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.6e-12  Score=106.09  Aligned_cols=153  Identities=15%  Similarity=0.129  Sum_probs=102.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        . -.|
T Consensus         6 ~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          6 FKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             EEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            4555555531    1356778899999999999999999999999999986     33334332210        0 001


Q ss_pred             cCCc-----------------------hhHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        115 DVGT-----------------------RGNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       115 ~~~~-----------------------~~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                      .+..                       .....+++.+|..  ..      -+.|+.+|..++..+..+|+  +++++.+.
T Consensus        82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  161 (241)
T PRK14250         82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA  161 (241)
T ss_pred             EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            0000                       0112234444442  11      12356678888888889988  56889999


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++...+.+.+.+++.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~--~~~~d~i~~l~  206 (241)
T PRK14250        162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA--KRIGDYTAFLN  206 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH--HHhCCEEEEEe
Confidence            99999999999888775 3356778889988763  46899999885

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.30  E-value=4.8e-12  Score=104.20  Aligned_cols=142  Identities=17%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCC-------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVG-------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~-------~~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           + -.|.+.       ..
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   94 (241)
T cd03256          15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS   94 (241)
T ss_pred             EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence            356778899999999999999999999999999986     33334321111           0 001110       00


Q ss_pred             h-----------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        120 G-----------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       120 ~-----------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                      .                             ...+++.+|....       -+.|+.+|-.|+..+..+|+  +++++.+.
T Consensus        95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  174 (241)
T cd03256          95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS  174 (241)
T ss_pred             HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            0                             1112333443211       12356678888888888888  56889999


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++|.....+.+.+++.. .....+++.+|.+.+.  .++||+++++.
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~--~~~~d~v~~l~  219 (241)
T cd03256         175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLA--REYADRIVGLK  219 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999999998875 3356788889998764  56899999885

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.30  E-value=3.6e-12  Score=104.62  Aligned_cols=139  Identities=17%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----ccccCC-------ch-----------
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----RAYDVG-------TR-----------  119 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----~~~~~~-------~~-----------  119 (212)
                      +++++...+|.+++|+|+||||||||+++|+++     |...++...+..    ..|.+.       ..           
T Consensus         2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence            356778889999999999999999999999987     333333221110    001000       00           


Q ss_pred             ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                  .....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  161 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW  161 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence                        01223334443211       13366778889889999998  6688999999999999999998765


Q ss_pred             -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       .....+++.+|.+.+.  ..+||+++++.
T Consensus       162 ~~~~~tii~~sH~~~~~--~~~~d~v~~l~  189 (230)
T TIGR01184       162 EEHRVTVLMVTHDVDEA--LLLSDRVVMLT  189 (230)
T ss_pred             HhcCCEEEEEeCCHHHH--HHhcCEEEEEe
Confidence             3356778889998653  57899998875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=2.8e-12  Score=105.75  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=101.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~  113 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         +. .
T Consensus         6 ~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          6 AKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             EeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            4455555531    1356778899999999999999999999999999986     33333321110         00 0


Q ss_pred             ccCC-------ch----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 YDVG-------TR----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 ~~~~-------~~----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      |.+.       ..                      ....+++.+|..-.       -+.|+.+|..++..+..+|+  ++
T Consensus        82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (241)
T PRK10895         82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL  161 (241)
T ss_pred             EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            1000       00                      11223333443211       13466677788888888888  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++.....+.+.+.++......+++.+|.+.+.  .++||+++++.
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~--~~~~d~v~~l~  211 (241)
T PRK10895        162 DEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET--LAVCERAYIVS  211 (241)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH--HHhcCEEEEEe
Confidence            889999999999999888877654456788889988653  46899998875

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.30  E-value=3.4e-12  Score=103.75  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.       + -.|.+.       ..    
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   95 (220)
T cd03263          16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH   95 (220)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence            367788899999999999999999999999999987     33333322210       0 001100       00    


Q ss_pred             -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                       ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  175 (220)
T cd03263          96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL  175 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence                             01122333443211       12356677888888888888  56888999999999999999


Q ss_pred             HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+...+ ..+++.+|.+.+.  ..+||+++++.
T Consensus       176 l~~~~~~-~tii~~sH~~~~~--~~~~d~i~~l~  206 (220)
T cd03263         176 ILEVRKG-RSIILTTHSMDEA--EALCDRIAIMS  206 (220)
T ss_pred             HHHHhcC-CEEEEEcCCHHHH--HHhcCEEEEEE
Confidence            9877543 6788889998764  46899998875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.8e-12  Score=114.46  Aligned_cols=142  Identities=23%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~  118 (212)
                      .+++++++...+|++++|+|+||||||||+++|+++     |...++...+.            + -.|.+       ..
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            357888999999999999999999999999999987     43444432211            0 01111       10


Q ss_pred             h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                     ....+++.+|..-+       -+.|+.+|-.|+..+..+|+  +++++.+.++|..+.
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~  201 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT  201 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence            0                     01123344444221       13467778889999999998  568899999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.++. .....+++.+|.+.++  ..+||+++++.
T Consensus       202 ~l~~~L~~l~~~~g~TIIivTHd~~~~--~~~~Dri~vL~  239 (400)
T PRK10070        202 EMQDELVKLQAKHQRTIVFISHDLDEA--MRIGDRIAIMQ  239 (400)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCHHHH--HHhCCEEEEEE
Confidence            9999998775 3456788889998775  47899999875

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.30  E-value=2.9e-12  Score=104.79  Aligned_cols=153  Identities=13%  Similarity=0.075  Sum_probs=101.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---c-ccccCCch
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---H-RAYDVGTR  119 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---~-~~~~~~~~  119 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.   . ..+.+...
T Consensus        25 ~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~t  100 (224)
T cd03220          25 ILGRKGEVGE----FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELT  100 (224)
T ss_pred             hhhhhhhcCC----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCc
Confidence            4444454432    2467788999999999999999999999999999986     22223221110   0 01111100


Q ss_pred             ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                           ....+.+.+|..-.       -+.|+.+|..++..+.++|+  +++++.+.+++...+.
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~  180 (224)
T cd03220         101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK  180 (224)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence                                 11122333342211       12356677788888989998  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       181 ~~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  216 (224)
T cd03220         181 CQRRLRELLKQGKTVILVSHDPSSI--KRLCDRALVLE  216 (224)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9998887653356788889998764  46899998875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.29  E-value=2.8e-12  Score=105.78  Aligned_cols=152  Identities=13%  Similarity=0.108  Sum_probs=102.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c--cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H--RA  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~--~~  113 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +  -.
T Consensus         5 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         5 LEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             EEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence            4455555531    1367888999999999999999999999999999986     33333322110        0  00


Q ss_pred             ccCC-------ch-----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138        114 YDVG-------TR-----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       114 ~~~~-------~~-----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~  150 (212)
                      |.+.       ..                             .....++.+|..-.       -+.|+.+|..++..+..
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~  160 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ  160 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            1000       00                             11222333443211       12356678888888889


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|+  +++++.+.++|...+.+.+.+++... ...+++.+|.+.+.  .++||+++++.
T Consensus       161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~--~~~~d~i~~l~  216 (242)
T TIGR03411       161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFV--RSIADKVTVLH  216 (242)
T ss_pred             CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            888  66889999999999999999988754 46788889998764  46899998875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.29  E-value=4e-12  Score=100.28  Aligned_cols=137  Identities=16%  Similarity=0.130  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------ccccCCch-hHH-HHHHHhC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYDVGTR-GNQ-VVRELFG  129 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~~~~~-~~~-~~~~~~g  129 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...++...+..        -.|.+... .+. .+.+...
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~   96 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLG   96 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhc
Confidence            56778899999999999999999999999999987     333344322210        01111110 000 0011111


Q ss_pred             CccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        130 EDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       130 ~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+  +.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+... ...+++.+|.+.+.   ..||++++++
T Consensus        97 ~~L--S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~~~~l~  170 (178)
T cd03247          97 RRF--SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGI---EHMDKILFLE  170 (178)
T ss_pred             ccC--CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence            122  4567788889999999998  56888999999999999999987743 46777778988664   3699998875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2.9e-12  Score=110.56  Aligned_cols=159  Identities=16%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             ceechhhhhhhhc------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------
Q psy17138         48 KLSSSNLRMRELG------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------  110 (212)
                      ++++.++.|...+      .....++++++...+|+++||+|+||||||||+++|.++     |...++...+.      
T Consensus         7 ~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~   86 (327)
T PRK11308          7 QAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEA   86 (327)
T ss_pred             EEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHH
Confidence            4555555554211      123578889999999999999999999999999999987     43344332210      


Q ss_pred             -----cc-cccCCc-------------------------------hhHHHHHHHhCCc--cC------CCCCccchHhHH
Q psy17138        111 -----HR-AYDVGT-------------------------------RGNQVVRELFGED--IA------LPDGSIDRKKLG  145 (212)
Q Consensus       111 -----~~-~~~~~~-------------------------------~~~~~~~~~~g~~--~~------~~~~~~~r~~l~  145 (212)
                           +. .|.++.                               .....+++.+|..  .+      -+.|+.+|..++
T Consensus        87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA  166 (327)
T PRK11308         87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA  166 (327)
T ss_pred             HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH
Confidence                 00 010000                               0112233344432  11      134677888999


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ..+..+|+  +++++...+++.....+.+.+.++. .....+++-+|.+-.+  ..+||++++++.
T Consensus       167 rAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~--~~~adrv~vm~~  230 (327)
T PRK11308        167 RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV--EHIADEVMVMYL  230 (327)
T ss_pred             HHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence            99999998  4578899999999999999988775 3345677779998764  468999998863

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2.6e-12  Score=108.18  Aligned_cols=154  Identities=14%  Similarity=0.100  Sum_probs=103.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +.+.+++|..   ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        . -.|
T Consensus         7 ~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   83 (274)
T PRK13647          7 VEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL   83 (274)
T ss_pred             EEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence            4555555531   12367888899999999999999999999999999986     43334332210        0 011


Q ss_pred             cCCc--------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        115 DVGT--------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       115 ~~~~--------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      .+..        .                     ......+.+|..-.       -+.|+.+|..++..+..+|+  +++
T Consensus        84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD  163 (274)
T PRK13647         84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD  163 (274)
T ss_pred             EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            1110        0                     01122233343211       12356678889989999988  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|.....+.+.+.++......+++.+|.+.+.  .++||+++++.
T Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~--~~~~d~i~~l~  212 (274)
T PRK13647        164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA--AEWADQVIVLK  212 (274)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88999999999999999987753356788889998764  46899999885

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.29  E-value=3.6e-12  Score=115.77  Aligned_cols=153  Identities=14%  Similarity=0.066  Sum_probs=105.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~  113 (212)
                      +++.+++|..    ...++++++...+|+++||+||||||||||+++|+++     |...++...+.         +. .
T Consensus         7 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   82 (501)
T PRK10762          7 LKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG   82 (501)
T ss_pred             EeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            5555566631    2467888999999999999999999999999999986     33334321110         00 0


Q ss_pred             ccCC----------------------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        114 YDVG----------------------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       114 ~~~~----------------------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      |.+.                            .    .....+++.+|....       -+.|+.+|..++..+..+|+ 
T Consensus        83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  162 (501)
T PRK10762         83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV  162 (501)
T ss_pred             EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            1000                            0    011233444444321       12467778899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~--~~~~d~i~~l~  215 (501)
T PRK10762        163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI--FEICDDVTVFR  215 (501)
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence             66899999999999999998887753356778889998764  47999999885

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.29  E-value=1.9e-11  Score=94.72  Aligned_cols=143  Identities=16%  Similarity=0.092  Sum_probs=91.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------------------------cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------------------------RA  113 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------------------------~~  113 (212)
                      +-++++++...+|++++|+||||||||||+|+++.|     |...+.+..+.-                         ++
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDN   96 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDN   96 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhc
Confidence            456778999999999999999999999999999987     444444433210                         00


Q ss_pred             -c--------cCCchhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        114 -Y--------DVGTRGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       114 -~--------~~~~~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                       .        .++......++..|+.+-.        .+.|..+|-.|.+-+---|.  ++++.++.+++.-.+.+.+.|
T Consensus        97 lifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi  176 (223)
T COG4619          97 LIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI  176 (223)
T ss_pred             cccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHH
Confidence             0        0011123334444443211        13455666665544333444  567788889999999998888


Q ss_pred             Hhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      -... +....++.-+|.-.++  -..+|++|.+..
T Consensus       177 ~~~v~~q~vAv~WiTHd~dqa--~rha~k~itl~~  209 (223)
T COG4619         177 HRYVREQNVAVLWITHDKDQA--IRHADKVITLQP  209 (223)
T ss_pred             HHHhhhhceEEEEEecChHHH--hhhhheEEEecc
Confidence            7665 4444444558887664  357899998864

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=3e-12  Score=108.49  Aligned_cols=157  Identities=11%  Similarity=0.115  Sum_probs=105.0

Q ss_pred             eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      +.+.+++|..... ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            
T Consensus         5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (287)
T PRK13641          5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR   84 (287)
T ss_pred             EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence            4555565532110 12467888999999999999999999999999999987     43333332110            


Q ss_pred             cc-cccCCc--------h---------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCCh
Q psy17138        111 HR-AYDVGT--------R---------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       111 ~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~  152 (212)
                      +. .|.+..        .                     ....+++.+|..  ..      -+.|+.+|..|+..+..+|
T Consensus        85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p  164 (287)
T PRK13641         85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP  164 (287)
T ss_pred             hceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            00 011110        0                     012223344542  11      1235677888998999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.+++.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~--~~~~d~v~~l~  219 (287)
T PRK13641        165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDV--AEYADDVLVLE  219 (287)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            8  56889999999999999999988753356777889998764  46899999885

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.29  E-value=2.3e-12  Score=98.50  Aligned_cols=120  Identities=14%  Similarity=0.077  Sum_probs=89.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----eeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI  139 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  139 (212)
                      ..+++++....|++++|+|+||||||||+++|+++-.     ..++..  .+-.|.+.                -+.|+.
T Consensus        15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~----------------lS~G~~   76 (144)
T cd03221          15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ----------------LSGGEK   76 (144)
T ss_pred             EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc----------------CCHHHH
Confidence            4566788899999999999999999999999998721     122210  00111111                246677


Q ss_pred             chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|-.++..+..+|+  +++++.+.+++.....+.+.++++   ...+++.+|.+.+.  ..+||+++++.
T Consensus        77 ~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~--~~~~d~v~~l~  141 (144)
T cd03221          77 MRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFL--DQVATKIIELE  141 (144)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH--HHhCCEEEEEe
Confidence            88888989999988  568888899999999999888875   24777778888664  46899998875

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=4.1e-12  Score=105.60  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c--c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H--R  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~--~  112 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +  -
T Consensus         7 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          7 SVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             EEeeEEEEECC----EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            35555565531    2366778899999999999999999999999999987     43333322110        0  0


Q ss_pred             cccCCc-------hh------------------------------------HHHHHHHhCCccC-------CCCCccchH
Q psy17138        113 AYDVGT-------RG------------------------------------NQVVRELFGEDIA-------LPDGSIDRK  142 (212)
Q Consensus       113 ~~~~~~-------~~------------------------------------~~~~~~~~g~~~~-------~~~~~~~r~  142 (212)
                      .|.+..       ..                                    ....++.+|....       -+.|+.+|.
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  162 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL  162 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence            010110       00                                    1111223333211       134567788


Q ss_pred             hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++..+..+|+  +++++.+.+++...+.+.+.+.++.. ....+++.+|.+.+.  .++||+++++.
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~  228 (255)
T PRK11300        163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV--MGISDRIYVVN  228 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88889999998  66889999999999999999987753 256788889998764  47899999885

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2.1e-12  Score=107.48  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=102.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|
T Consensus         5 ~~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          5 TENLTVGYGT----KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEeEEEEECC----EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            4445555531    1356778899999999999999999999999999986     32233221110        0 001


Q ss_pred             cC-------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        115 DV-------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~-------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+       ...                         .....++.+|....       -+.|+.+|-.++..+..+|+  
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  160 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV  160 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            00       000                         11222333443211       13466778889989999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.++......+++.+|.+.+.  .++||+++++.
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~--~~~~d~i~~l~  212 (255)
T PRK11231        161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQA--SRYCDHLVVLA  212 (255)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--HHhcCEEEEEE
Confidence            56889999999999999999987753356788889988763  57899999885

>PRK10908 cell division protein FtsE; Provisional

Probab=99.29  E-value=4e-12  Score=103.61  Aligned_cols=142  Identities=11%  Similarity=0.041  Sum_probs=97.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +. .|.+.       ..
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   95 (222)
T PRK10908         16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT   95 (222)
T ss_pred             eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence            356778899999999999999999999999999986     33333321110           00 01111       00


Q ss_pred             h---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 G---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                      .                     ....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (222)
T PRK10908         96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG  175 (222)
T ss_pred             HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence            0                     1122333443211       12356678888888888888  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       176 l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  211 (222)
T PRK10908        176 ILRLFEEFNRVGVTVLMATHDIGLI--SRRSYRMLTLS  211 (222)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9998887753356778889998764  46899999875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.28  E-value=3.2e-12  Score=102.87  Aligned_cols=140  Identities=17%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-cccc-------CCc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYD-------VGT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~-------~~~  118 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.            + -.|.       +..
T Consensus        12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   91 (206)
T TIGR03608        12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE   91 (206)
T ss_pred             EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence            356788899999999999999999999999999986     33333322110            0 0010       000


Q ss_pred             h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .                     ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+
T Consensus        92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~  171 (206)
T TIGR03608        92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD  171 (206)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence            0                     01223333443211       12356678888889999998  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .+.+.+++.......+++.+|.+...   .+||+++++
T Consensus       172 ~l~~~l~~~~~~~~tii~~sh~~~~~---~~~d~i~~l  206 (206)
T TIGR03608       172 EVLDLLLELNDEGKTIIIVTHDPEVA---KQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHH---hhcCEEEeC
Confidence            99999987753356777779988543   479998763

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.28  E-value=4.2e-12  Score=102.65  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=94.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------ccccCC-------ch---------
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------RAYDVG-------TR---------  119 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~~~~~~-------~~---------  119 (212)
                      ++++...+|++++|+|+||||||||+++|+++     |...++...+..       -.|.+.       ..         
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~   95 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence            68889999999999999999999999999986     333333221100       000000       00         


Q ss_pred             ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                  ......+.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  175 (211)
T cd03298          96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH  175 (211)
T ss_pred             ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                        11223333443211       13356678888888888888  5688999999999999999998775


Q ss_pred             -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       .....+++.+|.+.+.  ..+||+++++.
T Consensus       176 ~~~~~tii~~sH~~~~~--~~~~d~i~~l~  203 (211)
T cd03298         176 AETKMTVLMVTHQPEDA--KRLAQRVVFLD  203 (211)
T ss_pred             HhcCCEEEEEecCHHHH--HhhhCEEEEEE
Confidence             3356777779998764  46899999875

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.28  E-value=2.5e-12  Score=111.10  Aligned_cols=144  Identities=17%  Similarity=0.113  Sum_probs=100.4

Q ss_pred             cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccC
Q psy17138         63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDV  116 (212)
Q Consensus        63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~  116 (212)
                      ...++++++...+|+++||+|+||||||||+++|.++     |...+++..+.                  ++   .+.+
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            4577889999999999999999999999999999987     33334322210                  00   0111


Q ss_pred             Cchh-----------------------HHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        117 GTRG-----------------------NQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       117 ~~~~-----------------------~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                      ....                       ..++++.+|..  ..      -+.|+.+|..++..+..+|+  +++++.+.++
T Consensus       114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD  193 (331)
T PRK15079        114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD  193 (331)
T ss_pred             CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            1000                       11223333431  11      13467788899999999998  5588899999


Q ss_pred             HHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        164 PLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       164 p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +.....+.+.+.++. .....+++-+|.+..+  ..+||++++++.
T Consensus       194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~--~~~~dri~vl~~  237 (331)
T PRK15079        194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV--KHISDRVLVMYL  237 (331)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence            999999999998876 3345677779999765  468999999863

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.28  E-value=2.8e-12  Score=107.61  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=102.6

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~  111 (212)
                      ++++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +
T Consensus         9 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          9 DMRGVSFTRGN----RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             EEeCeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence            35555555531    1356778899999999999999999999999999986     33333321110           0


Q ss_pred             c-cccCC-------chhHH----------------------HHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        112 R-AYDVG-------TRGNQ----------------------VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       112 ~-~~~~~-------~~~~~----------------------~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      . .|.+.       ....+                      ..++.+|..-.       -+.|+.+|-.++..+..+|+ 
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l  164 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL  164 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            0 01111       01111                      12233343211       12356678888888989988 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.+++.....+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~--~~~~d~v~~l~  218 (269)
T PRK11831        165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV--LSIADHAYIVA  218 (269)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH--HHhhCEEEEEE
Confidence             5688999999999999999998775 3356778889998664  57899998875

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.28  E-value=7e-12  Score=103.42  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           +. .|.+.       ..
T Consensus        16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (243)
T TIGR02315        16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT   95 (243)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence            357788999999999999999999999999999986     33333321110           00 01100       00


Q ss_pred             -----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        120 -----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       120 -----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                                                   ....+++.+|....       -+.|+.+|..++..+..+|+  +++++.+.
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  175 (243)
T TIGR02315        96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS  175 (243)
T ss_pred             HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                                         01122233332211       12356678888889999988  56889999


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.....+.+.+.+.. .....+++.+|.+.+.  .++||+++++.
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~--~~~~d~v~~l~  220 (243)
T TIGR02315       176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA--KKYADRIVGLK  220 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence            99999999999998765 3356788889988663  57899998875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.28  E-value=3.8e-12  Score=106.07  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=105.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      .++.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           
T Consensus         6 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (257)
T PRK10619          6 LNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV   81 (257)
T ss_pred             EEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence            346666666641    1367788999999999999999999999999999987     33333321110           


Q ss_pred             ----------cc-cccCC-------ch----------------------hHHHHHHHhCCccC--C------CCCccchH
Q psy17138        111 ----------HR-AYDVG-------TR----------------------GNQVVRELFGEDIA--L------PDGSIDRK  142 (212)
Q Consensus       111 ----------~~-~~~~~-------~~----------------------~~~~~~~~~g~~~~--~------~~~~~~r~  142 (212)
                                +. .|.+.       ..                      ....+++.+|....  .      +.|+.+|.
T Consensus        82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv  161 (257)
T PRK10619         82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV  161 (257)
T ss_pred             ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence                      00 01000       00                      01223344444321  1      23456778


Q ss_pred             hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++..+..+|+  +++++.+.+++...+.+.+.+.++......+++.+|.+.+.  .++||+++++.
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~--~~~~d~i~~l~  226 (257)
T PRK10619        162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLH  226 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            88889999988  56889999999999999999888753456777779988764  46899999885

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.28  E-value=4.8e-12  Score=103.61  Aligned_cols=142  Identities=18%  Similarity=0.218  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------hh-
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------RG-  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~~-  120 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.         + -.|.+..       .. 
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (230)
T TIGR03410        14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE   93 (230)
T ss_pred             EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence            356888999999999999999999999999999986     33333321110         0 0111110       00 


Q ss_pred             -----------------HHHHHHHhC-C-ccC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        121 -----------------NQVVRELFG-E-DIA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       121 -----------------~~~~~~~~g-~-~~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                       ...+...++ . ...      -+.|+.+|..++..+..+|+  +++++.+.+++.....+.+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~  173 (230)
T TIGR03410        94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV  173 (230)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence                             112222222 1 110      12356677788888888888  66889999999999999999


Q ss_pred             HHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+... ....+++.+|.+.+.  ..+||+++++.
T Consensus       174 l~~~~~~~~~tii~~sH~~~~~--~~~~d~v~~l~  206 (230)
T TIGR03410       174 IRRLRAEGGMAILLVEQYLDFA--RELADRYYVME  206 (230)
T ss_pred             HHHHHHcCCcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            987753 356788889998764  56899998875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK07429 phosphoribulokinase; Provisional

Probab=99.28  E-value=1.8e-12  Score=111.56  Aligned_cols=126  Identities=19%  Similarity=0.261  Sum_probs=82.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-C---CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-G---AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV  148 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g---~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v  148 (212)
                      ..++.+|||+|+|||||||+++.|+++ +   ..+++.|... . +  .    ......+|...++.. ..+.    ..+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~-~-~--~----~~~r~~~g~~~l~p~-~~~~----d~l   71 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH-S-Y--D----RKQRKELGITALDPR-ANNL----DIM   71 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc-c-C--C----HHHHHhcCCcccCcc-chHH----HHH
Confidence            457899999999999999999999965 4   4577777642 1 1  1    112233454333221 1111    235


Q ss_pred             cCChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecc-ccccccccccCeEEEEEeCCC
Q psy17138        149 FSNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAV-LLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~-l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +++...+...+.+.+|.+.+.......... ...+++|+|+.+ +++..++++||.+|+|++|.+
T Consensus        72 ~~~l~~L~~g~~I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~e  136 (327)
T PRK07429         72 YEHLKALKTGQPILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEE  136 (327)
T ss_pred             HHHHHHHHCCCceecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHH
Confidence            555555556667788887776543321111 446799999997 566677899999999999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.28  E-value=2.7e-12  Score=116.89  Aligned_cols=155  Identities=14%  Similarity=0.049  Sum_probs=107.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~  112 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         ..
T Consensus        12 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439         12 LCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             EEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            346666666642    2367888999999999999999999999999999986     33333322110         00


Q ss_pred             -cccCCc------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        113 -AYDVGT------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       113 -~~~~~~------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                       .|.+..                        ......+..+|....       -+.|+.+|..++..+..+|+  +++++
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP  167 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP  167 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence             011110                        011223444554321       12356778889999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|.....+.+.++++......+++.+|.+.+.  ..+||+++++.
T Consensus       168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~--~~~~d~i~~l~  214 (510)
T PRK15439        168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI--RQLADRISVMR  214 (510)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999999999999999988753356788889998764  47899999885

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.28  E-value=6.8e-12  Score=103.21  Aligned_cols=140  Identities=13%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cccccCC-------chh----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRAYDVG-------TRG----  120 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~~~~~-------~~~----  120 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +-.|.+.       ...    
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l   95 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL   95 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence            56778899999999999999999999999999986     43334332210        0011111       000    


Q ss_pred             -----------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        121 -----------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       121 -----------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                       ...+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  175 (236)
T TIGR03864        96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV  175 (236)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence                             1122333443211       12356678888889999988  668899999999999999998


Q ss_pred             Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.. .....+++.+|.+.+.  . .||+++++.
T Consensus       176 ~~~~~~~~~tiii~sH~~~~~--~-~~d~i~~l~  206 (236)
T TIGR03864       176 RALCRDQGLSVLWATHLVDEI--E-ADDRLVVLH  206 (236)
T ss_pred             HHHHHhCCCEEEEEecChhhH--h-hCCEEEEEe
Confidence            8775 3356788889998775  2 499999885

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=2.4e-12  Score=108.68  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=103.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~  114 (212)
                      +.+.+++|...+ ....++++++...+|++++|+|+||||||||+++|+++     |...++...+..        . .|
T Consensus         7 ~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13650          7 VKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM   85 (279)
T ss_pred             EEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence            445555553211 11367888999999999999999999999999999987     433443322110        0 01


Q ss_pred             cCC--------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        115 DVG--------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       115 ~~~--------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      .+.        ..                     .....++.+|..-+       -+.|+.+|-.|+..+..+|+  +++
T Consensus        86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD  165 (279)
T PRK13650         86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD  165 (279)
T ss_pred             EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            000        00                     11222333443211       12356678889999999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+++...+.+.+.+.++. .....+++.+|.+.+.   .+||+++++.
T Consensus       166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~---~~~dri~~l~  214 (279)
T PRK13650        166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV---ALSDRVLVMK  214 (279)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence            8899999999999999988775 3356888889998765   3699998885

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.28  E-value=4.6e-12  Score=106.36  Aligned_cols=142  Identities=25%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccCC-------c
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDVG-------T  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~~-------~  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...+++..+.            + -.|.+.       .
T Consensus        38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  117 (269)
T cd03294          38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR  117 (269)
T ss_pred             eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence            356788999999999999999999999999999987     33334332110            0 001110       0


Q ss_pred             hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 ~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      ..                     ...+++.+|..-.       -+.|+.+|-.|+..+..+|+  +++++.+.+++...+
T Consensus       118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~  197 (269)
T cd03294         118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR  197 (269)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            00                     1122333443211       13467778889999999998  668999999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       198 ~l~~~l~~~~~~~g~tiii~tH~~~~~--~~~~d~v~~l~  235 (269)
T cd03294         198 EMQDELLRLQAELQKTIVFITHDLDEA--LRLGDRIAIMK  235 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            9999988775 3356788889998763  57899999885

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=4.3e-12  Score=107.59  Aligned_cols=142  Identities=13%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-cccCC--------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYDVG--------  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~~~--------  117 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            +. .|.++        
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~   99 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE   99 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence            367789999999999999999999999999999987     43344332110            00 01000        


Q ss_pred             ch---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        118 TR---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       118 ~~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      ..                     .+...++.+|..  ...      +.|+.+|..|+..+..+|+  +++++.+.++|..
T Consensus       100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~  179 (288)
T PRK13643        100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA  179 (288)
T ss_pred             chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence            00                     122333444542  111      2356678889988889988  5688999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       180 ~~~l~~~l~~l~~~g~til~vtHd~~~~--~~~~dri~~l~  218 (288)
T PRK13643        180 RIEMMQLFESIHQSGQTVVLVTHLMDDV--ADYADYVYLLE  218 (288)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9999998887753356788889998664  46899999875

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.28  E-value=2.2e-12  Score=111.44  Aligned_cols=160  Identities=14%  Similarity=0.075  Sum_probs=107.8

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-------  110 (212)
                      -..+++.++.|...+.....++++++...+|+++||+|+||||||||+++|.++-.        ..++...+.       
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            35577777777543333467889999999999999999999999999999998632        223322210       


Q ss_pred             -----cc-cccCCc---------hh----------------------HHHHHHHhCCcc----C------CCCCccchHh
Q psy17138        111 -----HR-AYDVGT---------RG----------------------NQVVRELFGEDI----A------LPDGSIDRKK  143 (212)
Q Consensus       111 -----~~-~~~~~~---------~~----------------------~~~~~~~~g~~~----~------~~~~~~~r~~  143 (212)
                           +. .|.++.         ..                      ...+++.+|.+-    .      -+.|+.+|..
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~  171 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM  171 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence                 00 011110         00                      011222233210    0      1345667888


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+..+..+|+  +++++.+.+++.....+.+.+.++. .....+++-+|.+..+  ..+||++++++
T Consensus       172 IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~--~~~~Dri~vm~  236 (330)
T PRK09473        172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV--AGICDKVLVMY  236 (330)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            9989999998  5588899999999999999988876 3345677779998764  46899999886

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=4.7e-12  Score=104.00  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=99.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~  111 (212)
                      +++.+++|.........++++++...+|++++|+|+||||||||+++|+++     |...++...+.            +
T Consensus         8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   87 (233)
T PRK11629          8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ   87 (233)
T ss_pred             EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence            455555553211012356778899999999999999999999999999987     32233321110            0


Q ss_pred             -ccccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        112 -RAYDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 -~~~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                       -.|.+..       .                     .....++.+|..-.       -+.|+.+|-.++..+..+|+  
T Consensus        88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll  167 (233)
T PRK11629         88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV  167 (233)
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             0011110       0                     01223344443211       12356677788888888888  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.+.. .....+++.+|.+.+..   .+|+++++.
T Consensus       168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~---~~~~~~~l~  219 (233)
T PRK11629        168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK---RMSRQLEMR  219 (233)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---hhCEEEEEE
Confidence            5688999999999999999998775 34567788899987652   356776653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.28  E-value=6.9e-12  Score=103.31  Aligned_cols=142  Identities=13%  Similarity=0.114  Sum_probs=97.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-------c-cccccC--------Cch---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-------G-HRAYDV--------GTR---  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-------~-~~~~~~--------~~~---  119 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+       . +-.|.+        ...   
T Consensus        35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e  114 (236)
T cd03267          35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID  114 (236)
T ss_pred             eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence            467788999999999999999999999999999986     3223322110       0 000111        000   


Q ss_pred             ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                                        ....+.+.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++...+.+.+
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~  194 (236)
T cd03267         115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN  194 (236)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence                              01122333343211       12356677788888889988  6689999999999999999


Q ss_pred             HHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       195 ~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~  228 (236)
T cd03267         195 FLKEYNRERGTTVLLTSHYMKDI--EALARRVLVID  228 (236)
T ss_pred             HHHHHHhcCCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence            998875 3356788889998653  57899999885

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.27  E-value=6.1e-12  Score=103.71  Aligned_cols=142  Identities=14%  Similarity=0.126  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------ccccC-------Cchh
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------RAYDV-------GTRG  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~~~~~-------~~~~  120 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+..           -.|.+       ....
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (240)
T PRK09493         15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA   94 (240)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence            356778899999999999999999999999999986     333333221110           00111       0000


Q ss_pred             ----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        121 ----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       121 ----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                            ..++++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++.....
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  174 (240)
T PRK09493         95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE  174 (240)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                                  1122333333211       12356677788888888888  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       175 l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  210 (240)
T PRK09493        175 VLKVMQDLAEEGMTMVIVTHEIGFA--EKVASRLIFID  210 (240)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999887753356777889998764  46899999885

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.27  E-value=5e-12  Score=115.05  Aligned_cols=154  Identities=13%  Similarity=0.037  Sum_probs=105.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-R  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~  112 (212)
                      .+++.+++|..    ...++++++....|++++|+|+||||||||+++|+++     |...++...+.         + -
T Consensus         7 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          7 SMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             EEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence            35555666631    1357889999999999999999999999999999986     33333321110         0 0


Q ss_pred             cccCCc-----------------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138        113 AYDVGT-----------------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       113 ~~~~~~-----------------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~  150 (212)
                      .|.+..                                   .....+++.+|....       -+.|+.+|..++..+..
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~  162 (510)
T PRK09700         83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML  162 (510)
T ss_pred             EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence            010000                                   011223344443211       12357778899999999


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|+  +++++.+.++|.....+.+.+.++......+++-+|.+.+.  ..+||++++++
T Consensus       163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~--~~~~d~v~~l~  219 (510)
T PRK09700        163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI--RRICDRYTVMK  219 (510)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            998  66899999999999999999988763356778889998764  47899999885

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=5.8e-12  Score=106.26  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-cccCCc-------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYDVGT-------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~~~~-------  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.            +. .|.+..       
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~  100 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE  100 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence            356778899999999999999999999999999986     33333321110            00 011110       


Q ss_pred             -hh---------------------HHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        119 -RG---------------------NQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       119 -~~---------------------~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                       ..                     ...+++.+|..  ...      +.|+.+|-.++..+..+|+  +++++.+.++|..
T Consensus       101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  180 (280)
T PRK13649        101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG  180 (280)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence             00                     11222344442  111      2356678888888889988  5688999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       181 ~~~l~~~l~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~  219 (280)
T PRK13649        181 RKELMTLFKKLHQSGMTIVLVTHLMDDV--ANYADFVYVLE  219 (280)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeccHHHH--HHhCCEEEEEE
Confidence            9999999887753356788889998653  46899998875

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=4.3e-12  Score=107.72  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=105.5

Q ss_pred             eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      +.+.+++|..... ....++++++...+|++++|+|+||||||||+++|.++     |...++.-.+.            
T Consensus         5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (290)
T PRK13634          5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR   84 (290)
T ss_pred             EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence            4555566632110 12467889999999999999999999999999999986     43334332110            


Q ss_pred             cc-cccCCc-----------------------------hhHHHHHHHhCCc-c-CC------CCCccchHhHHHHhcCCh
Q psy17138        111 HR-AYDVGT-----------------------------RGNQVVRELFGED-I-AL------PDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       111 ~~-~~~~~~-----------------------------~~~~~~~~~~g~~-~-~~------~~~~~~r~~l~~~vf~~~  152 (212)
                      +. .|.++.                             .....+++.+|.. . .+      +.|+.+|..|+..+..+|
T Consensus        85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P  164 (290)
T PRK13634         85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP  164 (290)
T ss_pred             hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            00 011110                             0112233445542 1 11      235667888999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+.++. .....+++-+|.+.+.  ..+||+++++.
T Consensus       165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~--~~~~drv~~l~  220 (290)
T PRK13634        165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA--ARYADQIVVMH  220 (290)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            8  5688899999999999999998775 3356778879998764  46899998875

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.27  E-value=4e-12  Score=106.09  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=96.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCC-------ch---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVG-------TR---  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~-------~~---  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|.+.       ..   
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   95 (258)
T PRK13548         16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE   95 (258)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence            357788899999999999999999999999999986     33333322110        0 001000       00   


Q ss_pred             ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC------ChH--HHHHHHhhhhHHH
Q psy17138        120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS------NKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~------~~~--~~~~~~~i~~p~~  166 (212)
                                        .....++.+|..-.       -+.|+.+|-.++..+.+      +|+  +++++.+.+++..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~  175 (258)
T PRK13548         96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH  175 (258)
T ss_pred             HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence                              11223333443211       12356678888888873      666  6688999999999


Q ss_pred             HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       176 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  215 (258)
T PRK13548        176 QHHVLRLARQLAHERGLAVIVVLHDLNLA--ARYADRIVLLH  215 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhcCEEEEEE
Confidence            999999988775 4456788889998764  46899999885

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.27  E-value=4e-12  Score=106.49  Aligned_cols=155  Identities=13%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-  112 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. 
T Consensus         8 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          8 LRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             EEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            446666666642    1367888999999999999999999999999999986     33333321110        00 


Q ss_pred             cccCC-----------------------------c---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        113 AYDVG-----------------------------T---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       113 ~~~~~-----------------------------~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                      .|.+.                             .   ......++.+|..-.       -+.|+.+|-.++..+..+|+
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  163 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA  163 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence            00000                             0   011223333443211       13456778889999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++.....+.+.+.++. .....+++.+|.+.+.  .++||+++++.
T Consensus       164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~--~~~~d~i~~l~  218 (265)
T PRK10253        164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA--CRYASHLIALR  218 (265)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence              5688999999999999999998775 3356777779998653  57899998874

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.27  E-value=4.3e-12  Score=111.39  Aligned_cols=142  Identities=24%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC----ccc------------cc-cc-------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD----QLG------------HR-AY-------  114 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D----~i~------------~~-~~-------  114 (212)
                      ..+++++++..+|++++|+|+||||||||+++|+++     |...++..    .+.            +. .|       
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            456778999999999999999999999999999987     44455541    110            00 01       


Q ss_pred             cCCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138        115 DVGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP  164 (212)
Q Consensus       115 ~~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p  164 (212)
                      .+....                     ....++.+|..-+       -+.|+.+|..|+..+..+|+  +++++.+.++|
T Consensus       118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~  197 (382)
T TIGR03415       118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP  197 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence            111111                     1123334443221       13467778889999999998  56888999999


Q ss_pred             HHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        165 LILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       165 ~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..++.+.+.+.++. .....+++-+|.+.++  .++||+++++.
T Consensus       198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~--~~l~DrI~vl~  239 (382)
T TIGR03415       198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEA--LKIGNRIAIME  239 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999998876 3356788889999875  47899998875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.27  E-value=6.9e-12  Score=101.25  Aligned_cols=128  Identities=20%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCe---eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAG---LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVF  149 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~---vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf  149 (212)
                      .++.+|||.|+|||||||+++.|.. ++..   +++-|.     |......  .-....+...++....+|...    ++
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~-----YYk~~~~--~~~~~~~~~n~d~p~A~D~dL----l~   74 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD-----YYKDQSH--LPFEERNKINYDHPEAFDLDL----LI   74 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc-----cccchhh--cCHhhcCCcCccChhhhcHHH----HH
Confidence            4579999999999999999999985 5532   444443     3222110  001111211222222344422    22


Q ss_pred             CChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCCC
Q psy17138        150 SNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~~  212 (212)
                      ++-..+..-..+.-|.+......+..+. . .+.++|++||-+++. ..|++++|..++|++|.|+
T Consensus        75 ~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~  140 (218)
T COG0572          75 EHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADV  140 (218)
T ss_pred             HHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccH
Confidence            2222222223345566655554443211 1 567899999999985 4799999999999999763

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=4.1e-12  Score=108.63  Aligned_cols=157  Identities=17%  Similarity=0.093  Sum_probs=105.0

Q ss_pred             eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-------------
Q psy17138         49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-------------  109 (212)
Q Consensus        49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-------------  109 (212)
                      +++.+++|..... ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+             
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (305)
T PRK13651          5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL   84 (305)
T ss_pred             EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccc
Confidence            4555666632211 12467889999999999999999999999999999987     4333331100             


Q ss_pred             -------------------ccc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC----
Q psy17138        110 -------------------GHR-AYDVGT--------R---------------------GNQVVRELFGED--IAL----  134 (212)
Q Consensus       110 -------------------~~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~----  134 (212)
                                         .+. .|.++.        .                     .....++.+|..  ..+    
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~  164 (305)
T PRK13651         85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF  164 (305)
T ss_pred             cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence                               000 011110        0                     112333444542  111    


Q ss_pred             --CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        135 --PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       135 --~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +.|+.+|..++..+..+|+  +++++.+.++|.....+.+.+.++......+++-+|.+.+.  ..+||+++++.
T Consensus       165 ~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~--~~~adrv~vl~  239 (305)
T PRK13651        165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV--LEWTKRTIFFK  239 (305)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH--HHhCCEEEEEE
Confidence              2356778889999999998  56889999999999999999987753356777779998653  47899999885

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.26  E-value=5.8e-12  Score=102.70  Aligned_cols=141  Identities=15%  Similarity=0.199  Sum_probs=95.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----cccccCC-------ch--------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----HRAYDVG-------TR--------  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~~~~~~~-------~~--------  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.     .-.|.+.       ..        
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~   94 (223)
T TIGR03740        15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH   94 (223)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence            56778889999999999999999999999999986     33333221110     0001110       01        


Q ss_pred             ---------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17138        120 ---------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESH  181 (212)
Q Consensus       120 ---------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~  181 (212)
                               ....+.+.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+.....
T Consensus        95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~  174 (223)
T TIGR03740        95 TTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG  174 (223)
T ss_pred             HHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence                     11223344443211       12356667788888888888  5688899999999999999998775334


Q ss_pred             cEEEEEeccccccccccccCeEEEEE
Q psy17138        182 KVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       182 ~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~tiii~sH~~~~~--~~~~d~i~~l~  198 (223)
T TIGR03740       175 ITVILSSHILSEV--QQLADHIGIIS  198 (223)
T ss_pred             CEEEEEcCCHHHH--HHhcCEEEEEe
Confidence            5778889988663  46899998874

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.26  E-value=5.9e-12  Score=109.68  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-ccc-------CCch---
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYD-------VGTR---  119 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~-------~~~~---  119 (212)
                      ++++...+|++++|+|+||||||||+++|+++     |...++...+.            +. .|.       +...   
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            57888899999999999999999999999987     33333321110            00 011       1100   


Q ss_pred             ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                  ....+++.+|..-+       -+.|+.+|-.|+..+..+|+  +++++.+.+++..++.+.+.++++.
T Consensus        96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~  175 (352)
T PRK11144         96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA  175 (352)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                        12233444554311       12367778899999999998  6688999999999999999998775


Q ss_pred             -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       .....+++.+|.+.+.  ..+||+++++.
T Consensus       176 ~~~g~tii~vTHd~~~~--~~~~d~i~~l~  203 (352)
T PRK11144        176 REINIPILYVSHSLDEI--LRLADRVVVLE  203 (352)
T ss_pred             HhcCCeEEEEecCHHHH--HHhCCEEEEEe
Confidence             3345777779998764  57899998875

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.26  E-value=1e-11  Score=100.93  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +++.+++|..  .....++++++...+|.+++|+|+||||||||+++|.++     |...++...+.        . -.|
T Consensus         5 ~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           5 FRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            4555555531  112467888899999999999999999999999999986     33333321110        0 001


Q ss_pred             cCC------ch---------------hHHHHHHHhCCcc------------------CCCCCccchHhHHHHhcCChH--
Q psy17138        115 DVG------TR---------------GNQVVRELFGEDI------------------ALPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~~------~~---------------~~~~~~~~~g~~~------------------~~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+.      ..               ........++..-                  .-+.|+.+|-.++..+..+|+  
T Consensus        83 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll  162 (220)
T cd03245          83 VPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL  162 (220)
T ss_pred             eCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence            000      00               1112222222210                  113456678888888888888  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.+...+ ..+++.+|.+..  + .+||+++++.
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~-~~~d~v~~l~  212 (220)
T cd03245         163 LLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--L-DLVDRIIVMD  212 (220)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--H-HhCCEEEEEe
Confidence            568899999999999999999887543 677888999864  2 5899998875

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=5.4e-12  Score=106.89  Aligned_cols=157  Identities=14%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             eechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         49 LSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        49 iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      +++.+++|.... .....++++++...+|++++|+|+||||||||+++|+++     |...++.-.+.            
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (286)
T PRK13646          5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR   84 (286)
T ss_pred             EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence            455555653211 012467889999999999999999999999999999987     43344331110            


Q ss_pred             cc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCCh
Q psy17138        111 HR-AYDVGT--------R---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       111 ~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~  152 (212)
                      +. .|.+..        .                     ....+++.+|..  ..+      +.|+.+|..++..+..+|
T Consensus        85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p  164 (286)
T PRK13646         85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP  164 (286)
T ss_pred             hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence            00 011110        0                     011233344432  111      235667888888888998


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+.++. .....+++.+|.+.+.  ..+||++++++
T Consensus       165 ~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~--~~~~dri~~l~  220 (286)
T PRK13646        165 DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV--ARYADEVIVMK  220 (286)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            8  5688899999999999999998875 3456777779998764  46899998875

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.26  E-value=8.1e-12  Score=101.86  Aligned_cols=142  Identities=13%  Similarity=0.021  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC----ccc------------c-ccccCCc---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD----QLG------------H-RAYDVGT---  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D----~i~------------~-~~~~~~~---  118 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++.+    .+.            + -.|.+..   
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~  101 (224)
T TIGR02324        22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV  101 (224)
T ss_pred             EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence            457788899999999999999999999999999987     44445421    110            0 0111110   


Q ss_pred             -------------------------hhHHHHHHHhCCcc-C-C------CCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        119 -------------------------RGNQVVRELFGEDI-A-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       119 -------------------------~~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                                               .....+++.+|... . +      +.|+.+|..++..+..+|+  +++++.+.++
T Consensus       102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD  181 (224)
T TIGR02324       102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD  181 (224)
T ss_pred             CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence                                     00112233444321 1 1      2345677788888999988  5688999999


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +...+.+.+.+.+.......+++.+|.+...  .++||+++.+.
T Consensus       182 ~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~--~~~~d~i~~~~  223 (224)
T TIGR02324       182 AANRQVVVELIAEAKARGAALIGIFHDEEVR--ELVADRVMDVT  223 (224)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcceeEecC
Confidence            9999999999988753356777879986553  46899988764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=5.1e-12  Score=103.97  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=99.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RA  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~  113 (212)
                      +.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++     |...++...+.         + -.
T Consensus         8 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (237)
T PRK11614          8 FDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA   83 (237)
T ss_pred             EEeEEEeeCC----ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence            4555555531    2367778899999999999999999999999999986     32233221110         0 00


Q ss_pred             ccCC-------chh-------------------HHHHHHHhC-Cc-cC------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        114 YDVG-------TRG-------------------NQVVRELFG-ED-IA------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       114 ~~~~-------~~~-------------------~~~~~~~~g-~~-~~------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                      |.+.       ...                   .....+.++ .. ..      -+.|+.+|-.++..+..+|+  ++++
T Consensus        84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE  163 (237)
T PRK11614         84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE  163 (237)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            1010       000                   111122221 11 00      13356677788888888888  5688


Q ss_pred             HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+++.....+.+.+.+.......+++.+|.+.+.  .++||+++++.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  211 (237)
T PRK11614        164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA--LKLADRGYVLE  211 (237)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HhhCCEEEEEe
Confidence            8999999999999999887753356777779988653  47899999875

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.26  E-value=9.7e-12  Score=101.68  Aligned_cols=153  Identities=16%  Similarity=0.076  Sum_probs=102.7

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-cc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RA  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~  113 (212)
                      .+.+.++.|.  +  ...++++++...+|++++|+|+||||||||+++|+++     |...++...+.        . -.
T Consensus         9 ~~~~l~~~~~--~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          9 QLQNVGYLAG--D--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             EEeccEEeeC--C--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            4555555553  1  2467888999999999999999999999999999986     33333321110        0 00


Q ss_pred             ccCC-------------------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138        114 YDVG-------------------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       114 ~~~~-------------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                      |.+.                         ......+++.+|..  ..+      +.|+.+|-.++..+..+|+  +++++
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI  164 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            0000                         00122344445542  111      2356677888899999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++...+.+.+.+.+.. .....+++.+|.+.+.   ..||++++++
T Consensus       165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~---~~~d~i~~l~  211 (225)
T PRK10247        165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI---NHADKVITLQ  211 (225)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH---HhCCEEEEEe
Confidence            99999999999999888765 3345677778988764   3699999985

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.5e-12  Score=106.18  Aligned_cols=155  Identities=23%  Similarity=0.214  Sum_probs=104.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-R  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~  112 (212)
                      ..+++.++++.  +  ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -
T Consensus        12 l~i~~l~~~~~--~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         12 FALRNVSFRVP--G--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             EEEeeEEEEEC--C--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            35666666663  1  1467888999999999999999999999999999986     33333331110        0 0


Q ss_pred             cccC-------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        113 AYDV-------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       113 ~~~~-------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                      .|.+       ...                         ......+.+|..-.       -+.|+.+|..++..+..+|+
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~  167 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR  167 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            0100       000                         11222333333211       13456678888888889988


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.+.++. .....+++.+|.+.+.  .++||+++++.
T Consensus       168 lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i--~~~~d~i~~l~  222 (265)
T PRK10575        168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA--ARYCDYLVALR  222 (265)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence              5688999999999999999998775 3356777879988653  47899999885

>TIGR00235 udk uridine kinase

Probab=99.25  E-value=8.5e-12  Score=100.80  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-C---CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-G---AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV  148 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g---~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v  148 (212)
                      +++|.++||+|+|||||||+++.|.++ .   ..++..|....    +... . ......+. .+.....++...+...+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~----~~~~-~-~~~~~~~~-~~~~~~~~~~~~l~~~l   75 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK----DQSH-L-EMAERKKT-NFDHPDAFDNDLLYEHL   75 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc----Chhh-C-CHHHhcCC-CCCCccHhHHHHHHHHH
Confidence            567999999999999999999999975 2   33444443211    0000 0 00001110 11111111211111100


Q ss_pred             cCChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138        149 FSNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~  212 (212)
                          ..+.....+..|.+.........+. . ....++++|+.+++ +..+.++||.+|+|++|.++
T Consensus        76 ----~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~  138 (207)
T TIGR00235        76 ----KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDI  138 (207)
T ss_pred             ----HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhH
Confidence                0000011122233322222211111 1 34679999988775 56688899999999999763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=6e-12  Score=103.30  Aligned_cols=138  Identities=13%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCC-------ch---------
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVG-------TR---------  119 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~-------~~---------  119 (212)
                      ++++...+|.+++|+|+||||||||+++|+++     |...++...+.      + -.|.+.       ..         
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   96 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL   96 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence            68899999999999999999999999999986     43333322110      0 001010       00         


Q ss_pred             ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                  ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~  176 (232)
T PRK10771         97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC  176 (232)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                        01222333443211       13456678888888888888  5688999999999999999888765


Q ss_pred             -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       .....+++.+|.+.+.  ..+||+++++.
T Consensus       177 ~~~~~tiii~sH~~~~~--~~~~d~i~~l~  204 (232)
T PRK10771        177 QERQLTLLMVSHSLEDA--ARIAPRSLVVA  204 (232)
T ss_pred             HhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence             3356778889998764  46899999885

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.25  E-value=4.1e-12  Score=114.47  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=111.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeC-Ccc-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINC-DQL-------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~-D~i-------  109 (212)
                      .++++.++.|...+....++++++++..+|+++||+|.|||||||+++.|.++.         -..++. |..       
T Consensus         6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~   85 (539)
T COG1123           6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM   85 (539)
T ss_pred             EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence            357788888877776778999999999999999999999999999999999862         122332 111       


Q ss_pred             ----cc----------ccccCCch-------------------hHHH---HHHHhCCcc------C---CCCCccchHhH
Q psy17138        110 ----GH----------RAYDVGTR-------------------GNQV---VRELFGEDI------A---LPDGSIDRKKL  144 (212)
Q Consensus       110 ----~~----------~~~~~~~~-------------------~~~~---~~~~~g~~~------~---~~~~~~~r~~l  144 (212)
                          ++          ..+.|...                   ....   +.+..|.+-      +   -+.|+.+|..+
T Consensus        86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i  165 (539)
T COG1123          86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI  165 (539)
T ss_pred             HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence                00          01111100                   1111   111112110      0   14678899999


Q ss_pred             HHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        145 GAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       145 ~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +..+..+|.+  .++++..+++....++.+.++++. ...-.+++-+|++--  ...+||+++++..
T Consensus       166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V--va~~aDrv~Vm~~  230 (539)
T COG1123         166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV--VAELADRVVVMYK  230 (539)
T ss_pred             HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH--HHHhcCeEEEEEC
Confidence            9999999994  478999999999999999998887 344455555898854  2479999999874

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.25  E-value=1.3e-11  Score=103.60  Aligned_cols=142  Identities=18%  Similarity=0.114  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc-----------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT-----------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~-----------  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|.+..           
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv  106 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI  106 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence            467888999999999999999999999999999987     33333321110        0 0010000           


Q ss_pred             --------------------hhHHHHHHHhCCc-c-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        119 --------------------RGNQVVRELFGED-I-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       119 --------------------~~~~~~~~~~g~~-~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                          ......++.+|.. . .      -+.|+.+|-.++..+..+|.  +++++.+.++|....
T Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  186 (267)
T PRK15112        107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS  186 (267)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence                                0112234444541 1 1      12356678888888889988  668899999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       187 ~l~~~l~~~~~~~g~tviivsH~~~~~--~~~~d~i~~l~  224 (267)
T PRK15112        187 QLINLMLELQEKQGISYIYVTQHLGMM--KHISDQVLVMH  224 (267)
T ss_pred             HHHHHHHHHHHHcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            9999998775 3356777779988663  57899999885

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.25  E-value=1.3e-11  Score=99.78  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------chh---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TRG---  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~~---  120 (212)
                      ..++++++...+| +++|+|+||||||||+++|+++     |...++...+.       . -.|.+.       ...   
T Consensus        14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   92 (211)
T cd03264          14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF   92 (211)
T ss_pred             EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence            3567788888889 9999999999999999999986     33333322110       0 001110       000   


Q ss_pred             ------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138        121 ------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE  173 (212)
Q Consensus       121 ------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~  173 (212)
                                        .....+.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++.....+.+.
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  172 (211)
T cd03264          93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL  172 (211)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                              1122333343211       13456678888888889998  67889999999999999999


Q ss_pred             HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++...+ ..+++-+|.+.+.  ..+||++++++
T Consensus       173 l~~~~~~-~tii~vsH~~~~~--~~~~d~i~~l~  203 (211)
T cd03264         173 LSELGED-RIVILSTHIVEDV--ESLCNQVAVLN  203 (211)
T ss_pred             HHHHhCC-CEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            9887643 6777879988763  46899999885

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=8.7e-12  Score=105.14  Aligned_cols=142  Identities=13%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cccC--------Cch--
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AYDV--------GTR--  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~~~--------~~~--  119 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+..        . .|.+        ...  
T Consensus        18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   97 (277)
T PRK13652         18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE   97 (277)
T ss_pred             ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence            367888999999999999999999999999999987     433343221110        0 0100        000  


Q ss_pred             -------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138        120 -------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK  171 (212)
Q Consensus       120 -------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~  171 (212)
                                         ......+.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++...+.+.
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~  177 (277)
T PRK13652         98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI  177 (277)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                               01222333333211       13467778889999999998  568899999999999999


Q ss_pred             HHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        172 EEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       172 ~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.. .....+++.+|.+.+.  .++||+++++.
T Consensus       178 ~~l~~l~~~~g~tvli~tH~~~~~--~~~~drv~~l~  212 (277)
T PRK13652        178 DFLNDLPETYGMTVIFSTHQLDLV--PEMADYIYVMD  212 (277)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9998775 3356788889998764  46899999885

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.25  E-value=9.3e-12  Score=103.77  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=104.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-----cc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-----LG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-----i~-------  110 (212)
                      ++.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...     +.       
T Consensus         8 ~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~   83 (258)
T PRK11701          8 SVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             EEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence            35555565532    1356778899999999999999999999999999986     433333322     10       


Q ss_pred             -----c-ccccCCc-------------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHH
Q psy17138        111 -----H-RAYDVGT-------------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLG  145 (212)
Q Consensus       111 -----~-~~~~~~~-------------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~  145 (212)
                           + -.|.+..                               .....+++.+|..  ..+      +.|+.+|-.++
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la  163 (258)
T PRK11701         84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA  163 (258)
T ss_pred             HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence                 0 0011100                               0011233445542  111      23566788899


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+..+|+  +++++.+.+++...+.+.+.+.++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~--~~~~d~i~~l~  226 (258)
T PRK11701        164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA--RLLAHRLLVMK  226 (258)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            88999998  5688999999999999999988765 3356777879998764  36899998875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.24  E-value=1.5e-11  Score=112.07  Aligned_cols=141  Identities=12%  Similarity=0.130  Sum_probs=99.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cccccCCc----------h
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HRAYDVGT----------R  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~~~~~~~----------~  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.          +-.|.+..          .
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            46788999999999999999999999999999986     33333322110          00111100          0


Q ss_pred             ------------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        120 ------------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       120 ------------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                                              ....++..+|..  ..+      +.|+.+|-.|+..+..+|+  +++++.+.+++.
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~  437 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS  437 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence                                    012233445542  111      3467778899999999998  568999999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.+.++......+++-+|.+.+.  .++||+++++.
T Consensus       438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i--~~~~d~i~~l~  477 (510)
T PRK15439        438 ARNDIYQLIRSIAAQNVAVLFISSDLEEI--EQMADRVLVMH  477 (510)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            99999999988763356777779999774  57899999885

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=1.1e-11  Score=102.39  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cc-ccccCC------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GH-RAYDVG------  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~-~~~~~~------  117 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+              .+ -.|.+.      
T Consensus        16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (242)
T PRK11124         16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP   95 (242)
T ss_pred             eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence            356778899999999999999999999999999986     3333332211              00 011111      


Q ss_pred             -chh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        118 -TRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       118 -~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                       ...                      ....++.+|....       -+.|+.+|..++..+..+|+  +++++.+.+++.
T Consensus        96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~  175 (242)
T PRK11124         96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE  175 (242)
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence             011                      1112233333211       12356677788888888888  568899999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ....+.+.+.+.......+++.+|.+.+.  .++||+++++.
T Consensus       176 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~--~~~~d~i~~l~  215 (242)
T PRK11124        176 ITAQIVSIIRELAETGITQVIVTHEVEVA--RKTASRVVYME  215 (242)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            99999999987753356788889998763  46899998875

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.1e-11  Score=104.12  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=102.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------  110 (212)
                      ..+.+..++|..    ...++++++...+|++++|+|+||||||||+++|+++..          ..++...+.      
T Consensus        14 l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~   89 (269)
T PRK14259         14 ISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP   89 (269)
T ss_pred             EEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence            345566666532    135788899999999999999999999999999998621          223221110      


Q ss_pred             ----c-ccccCCc------h--------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 ----H-RAYDVGT------R--------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 ----~-~~~~~~~------~--------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                          + -.|.+..      .                    .....++.++..     ..      -+.|+.+|-.++..+
T Consensus        90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral  169 (269)
T PRK14259         90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI  169 (269)
T ss_pred             HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence                0 0111110      0                    011122333321     01      123566777888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||++++++
T Consensus       170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~  227 (269)
T PRK14259        170 AIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQA--VRVSDMTAFFN  227 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCEEEEEe
Confidence            89988  66889999999999999999987753 35777879988664  57999999987

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=6e-12  Score=105.98  Aligned_cols=141  Identities=23%  Similarity=0.188  Sum_probs=97.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-cccc--------CCch-
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYD--------VGTR-  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~--------~~~~-  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         + -.|.        .... 
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   95 (274)
T PRK13644         16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV   95 (274)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence            367888999999999999999999999999999987     33333322110         0 0000        0000 


Q ss_pred             --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                                          ....+++.+|...+       -+.|+.+|..++..+..+|+  +++++.+.++|.....+
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l  175 (274)
T PRK13644         96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV  175 (274)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                                01122333443211       12366778889999999998  56889999999999999


Q ss_pred             HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.++......+++.+|.+.+.   ..||+++++.
T Consensus       176 ~~~l~~l~~~g~til~~tH~~~~~---~~~d~v~~l~  209 (274)
T PRK13644        176 LERIKKLHEKGKTIVYITHNLEEL---HDADRIIVMD  209 (274)
T ss_pred             HHHHHHHHhCCCEEEEEecCHHHH---hhCCEEEEEE
Confidence            999987754456788889999774   3599999885

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.24  E-value=8.7e-12  Score=108.71  Aligned_cols=138  Identities=21%  Similarity=0.168  Sum_probs=96.0

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------ccc-cc-------CCchh--
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HRA-YD-------VGTRG--  120 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~~-~~-------~~~~~--  120 (212)
                      ++++...+|++++|+|+||||||||+++|+++     |...++...+.            +.+ |.       +....  
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            57788899999999999999999999999987     33333322110            000 11       11000  


Q ss_pred             -----------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        121 -----------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       121 -----------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                       ...+++.+|..-+       -+.|+.+|-.++..+..+|+  +++++.+.+++..++.+.+.+
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  174 (354)
T TIGR02142        95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL  174 (354)
T ss_pred             HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence                             1233344443211       13467778899999999998  568899999999999999999


Q ss_pred             Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~~l~~~~g~tiiivtH~~~~~--~~~~d~i~~l~  206 (354)
T TIGR02142       175 ERLHAEFGIPILYVSHSLQEV--LRLADRVVVLE  206 (354)
T ss_pred             HHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence            8875 3356777879998764  47899998875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.24  E-value=5.7e-12  Score=117.34  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=109.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--------------  107 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--------------  107 (212)
                      .++++.+++|...+.....++++++...+|.++||+|+||||||||+++|+++     |...++..              
T Consensus        13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~   92 (623)
T PRK10261         13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE   92 (623)
T ss_pred             EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence            45777777775322233578889999999999999999999999999999987     22222210              


Q ss_pred             ------------ccc---ccc---ccCCch----------------------hHHHHHHHhCCcc----CC------CCC
Q psy17138        108 ------------QLG---HRA---YDVGTR----------------------GNQVVRELFGEDI----AL------PDG  137 (212)
Q Consensus       108 ------------~i~---~~~---~~~~~~----------------------~~~~~~~~~g~~~----~~------~~~  137 (212)
                                  .++   .+.   +.+...                      ....+++.+|...    ++      +.|
T Consensus        93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgG  172 (623)
T PRK10261         93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGG  172 (623)
T ss_pred             CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHH
Confidence                        010   000   011100                      0112344455421    11      346


Q ss_pred             ccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        138 SIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       138 ~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+|..|+..+..+|+  +++++.+.++|.....+.+.++++. .....+++-+|.+.+.  ..+||++++++
T Consensus       173 q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~--~~~adri~vl~  243 (623)
T PRK10261        173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV--AEIADRVLVMY  243 (623)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEee
Confidence            7788899999999998  5689999999999999999998875 3355777779998764  47999999986

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.24  E-value=1.1e-11  Score=101.73  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=102.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc-ccc-
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR-AYD-  115 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~-~~~-  115 (212)
                      +++.++++..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.      +. .|. 
T Consensus         3 ~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~   78 (232)
T cd03300           3 LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF   78 (232)
T ss_pred             EEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence            4455555531    1467778899999999999999999999999999986     43334322110      00 000 


Q ss_pred             ------CCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHH
Q psy17138        116 ------VGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLN  159 (212)
Q Consensus       116 ------~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~  159 (212)
                            ++..                     ....+++.+|..-+       -+.|+.+|-.++..+..+|+  +++++.
T Consensus        79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (232)
T cd03300          79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL  158 (232)
T ss_pred             cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                  0000                     11223334444311       12356677788889999998  568899


Q ss_pred             hhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        160 QAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       160 ~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+++...+.+.+.+.++. .....+++.+|.+.+.  ..+||++++++
T Consensus       159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~--~~~~d~i~~l~  205 (232)
T cd03300         159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA--LTMSDRIAVMN  205 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            9999999999999988775 3356777779988663  46899999875

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=7.8e-12  Score=106.00  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=104.7

Q ss_pred             cceechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138         47 DKLSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-----------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-----------  109 (212)
                      ..+.+.+++|.... .....++++++...+|.+++|+|+||||||||+++|+++     |...++...+           
T Consensus         7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   86 (289)
T PRK13645          7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK   86 (289)
T ss_pred             EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence            34666666663211 012367788899999999999999999999999999986     3333332111           


Q ss_pred             --ccc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhc
Q psy17138        110 --GHR-AYDVGT--------R---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVF  149 (212)
Q Consensus       110 --~~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf  149 (212)
                        .+. .|.+..        .                     ....+.+.++..  ..+      +.|+.+|-.++..+.
T Consensus        87 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~  166 (289)
T PRK13645         87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA  166 (289)
T ss_pred             HHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence              000 011110        0                     011223334431  111      236677888888888


Q ss_pred             CChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        150 SNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|+  +++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~--~~~~d~i~~l~  225 (289)
T PRK13645        167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV--LRIADEVIVMH  225 (289)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9988  5688999999999999999888765 3356788889998653  57899998885

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.23  E-value=1.4e-11  Score=102.23  Aligned_cols=141  Identities=21%  Similarity=0.243  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------c-ccccCCc-------h-----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------H-RAYDVGT-------R-----  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~-~~~~~~~-------~-----  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++    |...++...+.        + -.|.+..       .     
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl   90 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL   90 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence            56778899999999999999999999999999986    22233322110        0 0011100       0     


Q ss_pred             ---------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC-------ChH--HHHHHHhhhhHHHHH
Q psy17138        120 ---------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS-------NKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 ---------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~-------~~~--~~~~~~~i~~p~~~~  168 (212)
                                     ....+++.+|..-.       -+.|+.+|..++..+.+       +|+  +++++.+.+++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~  170 (248)
T PRK03695         91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA  170 (248)
T ss_pred             HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence                           11233344443211       12356677788888776       445  668899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       171 ~l~~~L~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~  207 (248)
T PRK03695        171 ALDRLLSELCQQGIAVVMSSHDLNHT--LRHADRVWLLK  207 (248)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            99999887753456788889998764  57899999885

>KOG0055|consensus

Probab=99.23  E-value=8.8e-12  Score=120.29  Aligned_cols=155  Identities=19%  Similarity=0.219  Sum_probs=106.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      ...++.++|+... ...-++++++..+.|..++|+|+|||||||+.++|.++     |...+|+.++.            
T Consensus       352 ef~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig  430 (1228)
T KOG0055|consen  352 EFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG  430 (1228)
T ss_pred             EEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence            3455555554332 34566778999999999999999999999999999986     66667765541            


Q ss_pred             ---cc----------c--ccCCchhHHHHH------------HHh--------CCcc-CCCCCccchHhHHHHhcCChH-
Q psy17138        111 ---HR----------A--YDVGTRGNQVVR------------ELF--------GEDI-ALPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ---~~----------~--~~~~~~~~~~~~------------~~~--------g~~~-~~~~~~~~r~~l~~~vf~~~~-  153 (212)
                         ++          +  |.......+++.            ..+        |+.- .-+.|+.+|-.+++.+..||. 
T Consensus       431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I  510 (1228)
T KOG0055|consen  431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI  510 (1228)
T ss_pred             eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence               11          0  111110111111            111        1110 124578889999999999999 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       ++++.+..+++.-.+.+++.+.++..+..++++ +|-|-.-  ++ +|+++++.
T Consensus       511 LLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV-aHRLStI--rn-aD~I~v~~  561 (1228)
T KOG0055|consen  511 LLLDEATSALDAESERVVQEALDKASKGRTTIVV-AHRLSTI--RN-ADKIAVME  561 (1228)
T ss_pred             EEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE-eeehhhh--hc-cCEEEEEE
Confidence             678999999999999999999888655545555 8988763  34 89999875

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.23  E-value=1.1e-11  Score=100.94  Aligned_cols=141  Identities=18%  Similarity=0.082  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCC-------ch
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVG-------TR  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~-------~~  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.           + -.|.+.       ..
T Consensus        19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (220)
T TIGR02982        19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT   98 (220)
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence            356778899999999999999999999999999986     32333322110           0 001000       00


Q ss_pred             ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                            .....++.+|..-.       -+.|+.+|-.++..+.++|+  +++++...+++....
T Consensus        99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~  178 (220)
T TIGR02982        99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR  178 (220)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence                                  12233334443211       12356677888889999988  568889999999999


Q ss_pred             HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+++.. .....+++.+|.+..   .++||++++++
T Consensus       179 ~l~~~l~~~~~~~~~tii~~sh~~~~---~~~~d~v~~l~  215 (220)
T TIGR02982       179 DVVELMQKLAREQGCTILIVTHDNRI---LDVADRIVHME  215 (220)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHH---HhhCCEEEEEE
Confidence            9999988765 345778887999742   46899999885

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.23  E-value=2.3e-11  Score=100.30  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=95.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------cc--cccCCc--------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------HR--AYDVGT--------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~~--~~~~~~--------  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++       |...++...+.        +.  .|.+..        
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (243)
T TIGR01978        14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS   93 (243)
T ss_pred             EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence            356788999999999999999999999999999986       22233321110        00  011110        


Q ss_pred             ---------------------------hhHHHHHHHhCCc--cC-------CCCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138        119 ---------------------------RGNQVVRELFGED--IA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQ  160 (212)
Q Consensus       119 ---------------------------~~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~  160 (212)
                                                 ......++.+|..  ..       -+.|+.+|-.++..+..+|+  +++++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  173 (243)
T TIGR01978        94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS  173 (243)
T ss_pred             HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence                                       0011222233332  11       12345667788888888888  6688999


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138        161 AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF  207 (212)
Q Consensus       161 i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~  207 (212)
                      .+++.....+.+.+.+.......+++.+|.+.+.  ..+ ||+++++.
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~--~~~~~d~i~~l~  219 (243)
T TIGR01978       174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLL--NYIKPDYVHVLL  219 (243)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH--HhhcCCeEEEEe
Confidence            9999999999999988753346777889988664  356 79998875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.23  E-value=9.4e-12  Score=100.84  Aligned_cols=139  Identities=16%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccC-------Cch--------
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDV-------GTR--------  119 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~-------~~~--------  119 (212)
                      .++++...+|.+++|+|+||||||||+++|+++     |...++...+.      + -.|.+       ...        
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~   94 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG   94 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence            468889999999999999999999999999986     33333322110      0 00100       000        


Q ss_pred             -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                                   ....+++.+|..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  174 (213)
T TIGR01277        95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL  174 (213)
T ss_pred             hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence                         11122333333211       13366678888888888888  568889999999999999998877


Q ss_pred             c-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        178 S-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       178 ~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      . .....+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~~~~~~tii~vsh~~~~~--~~~~d~v~~l~  203 (213)
T TIGR01277       175 CSERQRTLLMVTHHLSDA--RAIASQIAVVS  203 (213)
T ss_pred             HHhcCCEEEEEeCCHHHH--HhhcCeEEEEE
Confidence            5 3356777778988653  46899999885

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.2e-11  Score=102.61  Aligned_cols=152  Identities=15%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcccc-------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLGH-------  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~~-------  111 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++          |...+++..+..       
T Consensus         6 ~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          6 ARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             EEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            4444555531    1356778899999999999999999999999999874          322233211110       


Q ss_pred             ----ccccCC------ch----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        112 ----RAYDVG------TR----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       112 ----~~~~~~------~~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                          -.|.+.      ..                      .....++.+|..     ..      -+.|+.+|-.++..+
T Consensus        82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence                001000      00                      011223334421     01      123566777888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.++++.. ...+++.+|.+.+.  ..+||+++++.
T Consensus       162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~v~~l~  219 (250)
T PRK14245        162 AVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQA--ARVSDKTAFFY  219 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence            88888  66889999999999999999988753 46778889988764  46899999885

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.23  E-value=6.8e-12  Score=103.17  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc------h----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT------R----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~------~----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|.+..      .    
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n   95 (237)
T cd03252          16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN   95 (237)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence            356778899999999999999999999999999987     33334332110        0 0010100      0    


Q ss_pred             --------hHHH---H---------HHHh--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        120 --------GNQV---V---------RELF--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 --------~~~~---~---------~~~~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                              ....   .         +..+  |.+      . .-+.|+.+|-.++..+..+|+  +++++.+.+++....
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~  175 (237)
T cd03252          96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH  175 (237)
T ss_pred             hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence                    0001   0         1111  100      0 013456677788888888888  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+... ...+++.+|.+.+.   ..||+++++.
T Consensus       176 ~l~~~l~~~~~-~~tiii~sH~~~~~---~~~d~v~~l~  210 (237)
T cd03252         176 AIMRNMHDICA-GRTVIIIAHRLSTV---KNADRIIVME  210 (237)
T ss_pred             HHHHHHHHhcC-CCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            99999988754 56788889998764   3599998875

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=1.1e-11  Score=112.76  Aligned_cols=154  Identities=14%  Similarity=0.053  Sum_probs=105.5

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc---------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG---------H  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~---------~  111 (212)
                      .+++.+++|..    ...++++++....|++++|+|+||||||||+++|+++-.       ..++...+.         +
T Consensus         7 ~~~nl~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          7 EMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             EEeeeEEEeCC----eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            35566666631    246788999999999999999999999999999998632       123221110         0


Q ss_pred             cc-ccCC---------------------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCCh
Q psy17138        112 RA-YDVG---------------------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       112 ~~-~~~~---------------------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~  152 (212)
                      .+ |.++                           .    .....+.+.+|....       -+.|+.+|-.++..+..+|
T Consensus        83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  162 (506)
T PRK13549         83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA  162 (506)
T ss_pred             CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence            00 0000                           0    011233444554321       1236777889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+.++......+++-+|.+.+.  ..+||+++++.
T Consensus       163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~--~~~~d~v~~l~  217 (506)
T PRK13549        163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV--KAISDTICVIR  217 (506)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HHhcCEEEEEE
Confidence            8  66899999999999999999988753356778889998764  47899999875

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.23  E-value=1.4e-11  Score=98.99  Aligned_cols=140  Identities=17%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-cccC-------C-------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-AYDV-------G-------  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~~~~-------~-------  117 (212)
                      .++++++...+|+++||+|+||||||||+++|+++     |...++...+.       +. .|.+       .       
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   94 (201)
T cd03231          15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL   94 (201)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence            56788899999999999999999999999999987     32333321110       00 0100       0       


Q ss_pred             --------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17138        118 --------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES  180 (212)
Q Consensus       118 --------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~  180 (212)
                              .......++.+|..-+.       +.|+.+|..++..+.++|+  +++++.+.+++...+.+.+.+.+....
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  174 (201)
T cd03231          95 RFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR  174 (201)
T ss_pred             HhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence                    01122333444432111       2356677888888888988  568899999999999999998776533


Q ss_pred             CcEEEEEeccccccccccccCeEEEE
Q psy17138        181 HKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       181 ~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ...+++.+|...+  +...||+++..
T Consensus       175 g~tiii~sH~~~~--~~~~~~~~~~~  198 (201)
T cd03231         175 GGMVVLTTHQDLG--LSEAGARELDL  198 (201)
T ss_pred             CCEEEEEecCchh--hhhccceeEec
Confidence            5577777887655  34688888653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=1.3e-11  Score=104.31  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=104.5

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA-  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~-  113 (212)
                      .+++.+++|..  .....++++++...+|.+++|+|+||||||||+++|+++     |-..+++..+..        .+ 
T Consensus         7 ~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13635          7 RVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG   84 (279)
T ss_pred             EEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence            46666666632  112367788899999999999999999999999999986     433343322210        00 


Q ss_pred             ccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 YDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 ~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      |.+.        ...                     ...++..+|..-+       -+.|+.+|..++..+..+|+  ++
T Consensus        85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  164 (279)
T PRK13635         85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL  164 (279)
T ss_pred             EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1110        000                     1222333343211       13356678888889999998  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.++|.....+.+.+.++. .....+++.+|.+.+.  . .||+++++.
T Consensus       165 DEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~--~-~~d~i~~l~  214 (279)
T PRK13635        165 DEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA--A-QADRVIVMN  214 (279)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH--H-cCCEEEEEE
Confidence            88999999999999999998876 3356788889998775  2 499998875

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=1.1e-11  Score=104.49  Aligned_cols=154  Identities=12%  Similarity=0.113  Sum_probs=102.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-R  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~  112 (212)
                      +++.+++|..   ....++++++...+|++++|+|+||||||||+++|+++     |...++...+.          + -
T Consensus         4 ~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          4 TRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            4455555531   11356778899999999999999999999999999986     33333322110          0 0


Q ss_pred             cccCCc--------hh---------------------HHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138        113 AYDVGT--------RG---------------------NQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~~~~~~--------~~---------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      .|.+..        ..                     ...+++.+|..-+.       +.|+.+|..++..+..+|+  +
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll  160 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV  160 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            011110        00                     11222333332111       2356677888888999988  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~--~~~~d~i~~l~  211 (275)
T PRK13639        161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV--PVYADKVYVMS  211 (275)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            6889999999999999999988753356778889998764  46899998874

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.22  E-value=1.9e-11  Score=102.35  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccCC
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDVG  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~~  117 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.                  .+   .+.+.
T Consensus        25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  104 (265)
T TIGR02769        25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR  104 (265)
T ss_pred             EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence            467888999999999999999999999999999987     33333321110                  00   01100


Q ss_pred             c----------------------hhHHHHHHHhCCc-c-CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        118 T----------------------RGNQVVRELFGED-I-AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       118 ~----------------------~~~~~~~~~~g~~-~-~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                      .                      ......++.+|.. . .+      +.|+.+|..++..+.++|+  +++++.+.+++.
T Consensus       105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~  184 (265)
T TIGR02769       105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV  184 (265)
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            0                      0112233445542 1 11      2356678888889999998  568889999999


Q ss_pred             HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ....+.+.+.++. .....+++.+|.+...  ..+||+++++.
T Consensus       185 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~--~~~~d~i~~l~  225 (265)
T TIGR02769       185 LQAVILELLRKLQQAFGTAYLFITHDLRLV--QSFCQRVAVMD  225 (265)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHHhcEEEEEe
Confidence            9999999888775 3356788889998764  46899998885

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.22  E-value=1.1e-11  Score=103.33  Aligned_cols=142  Identities=15%  Similarity=0.042  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc-------h---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT-------R---  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~-------~---  119 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.        + -.|.+..       .   
T Consensus        15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   94 (256)
T TIGR03873        15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD   94 (256)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence            367778899999999999999999999999999986     33333321110        0 0011000       0   


Q ss_pred             ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                            .....++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++....
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  174 (256)
T TIGR03873        95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL  174 (256)
T ss_pred             HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence                                  01122233333211       12356677788888888887  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.......+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  211 (256)
T TIGR03873       175 ETLALVRELAATGVTVVAALHDLNLA--ASYCDHVVVLD  211 (256)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            99999988753346788889988764  47899999885

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.22  E-value=2e-11  Score=98.96  Aligned_cols=137  Identities=18%  Similarity=0.157  Sum_probs=93.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cch---
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GTR---  119 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~~---  119 (212)
                      ++++...+ ++++|+|+||||||||+++|+++     |...++...+.            + -.|.+       ...   
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            78889999 99999999999999999999986     32333221110            0 00100       000   


Q ss_pred             ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                      ....+++.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (214)
T cd03297          95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL  174 (214)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence                            11223344443211       12356678888889999998  668899999999999999999


Q ss_pred             Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.. .....+++-+|.+.+.  ..+||+++++.
T Consensus       175 ~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  206 (214)
T cd03297         175 KQIKKNLNIPVIFVTHDLSEA--EYLADRIVVME  206 (214)
T ss_pred             HHHHHHcCcEEEEEecCHHHH--HHhcCEEEEEE
Confidence            8775 3355777779998763  46899999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.22  E-value=1.7e-11  Score=101.83  Aligned_cols=153  Identities=15%  Similarity=0.062  Sum_probs=101.3

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-----cc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-----LG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-----i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...     +.        
T Consensus         6 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (253)
T TIGR02323         6 VSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR   81 (253)
T ss_pred             EeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence            4455555531    1346778899999999999999999999999999987     333333211     10        


Q ss_pred             ----c-ccccCCc---------h----------------------hHHHHHHHhCCc--cCC------CCCccchHhHHH
Q psy17138        111 ----H-RAYDVGT---------R----------------------GNQVVRELFGED--IAL------PDGSIDRKKLGA  146 (212)
Q Consensus       111 ----~-~~~~~~~---------~----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~  146 (212)
                          + -.|.+..         .                      ...++++.+|..  ..+      +.|+.+|..++.
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar  161 (253)
T TIGR02323        82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR  161 (253)
T ss_pred             HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence                0 0010000         0                      011223334432  111      235667888999


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.++|.....+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~--~~~~d~~~~l~  223 (253)
T TIGR02323       162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA--RLLAQRLLVMQ  223 (253)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            9999998  6688999999999999999887764 3355777778988654  46899998875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.22  E-value=2e-11  Score=100.98  Aligned_cols=153  Identities=10%  Similarity=0.063  Sum_probs=98.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------CeeeeCCccc---------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLINCDQLG---------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~~D~i~---------~~  112 (212)
                      +.+.+++|.  +  ...++++++...+|.+++|+|+||||||||+++|+++.       ...++...+.         ..
T Consensus         4 ~~nl~~~~~--~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (248)
T PRK09580          4 IKDLHVSVE--D--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG   79 (248)
T ss_pred             EEEEEEEeC--C--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence            445555553  1  13577788999999999999999999999999999872       1233321110         00


Q ss_pred             c-ccCCch-----------------------------------hHHHHHHHhCCc-------c--CCCCCccchHhHHHH
Q psy17138        113 A-YDVGTR-----------------------------------GNQVVRELFGED-------I--ALPDGSIDRKKLGAI  147 (212)
Q Consensus       113 ~-~~~~~~-----------------------------------~~~~~~~~~g~~-------~--~~~~~~~~r~~l~~~  147 (212)
                      + |.+...                                   .....++.++.+       .  .-+.|+.+|..++..
T Consensus        80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara  159 (248)
T PRK09580         80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  159 (248)
T ss_pred             eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence            1 100000                                   001111222221       0  013456677888889


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~  207 (212)
                      +.++|+  +++++.+.+++.....+.+.+.++......+++.+|.+...  ... ||+++++.
T Consensus       160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~--~~~~~d~i~~l~  220 (248)
T PRK09580        160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL--DYIKPDYVHVLY  220 (248)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HhhhCCEEEEEE
Confidence            999998  66889999999999999988877653356778889987654  234 79988774

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.22  E-value=2e-11  Score=101.53  Aligned_cols=152  Identities=13%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCcc------cc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQL------GH-R  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i------~~-~  112 (212)
                      +++.+++|   +.  ..++++++...+|.+++|+|+||||||||+++|+++-         ...++...+      .+ -
T Consensus         7 ~~~l~~~~---~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i   81 (254)
T PRK10418          7 LRNIALQA---AQ--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI   81 (254)
T ss_pred             EeCeEEEe---cc--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence            45555555   11  3577788999999999999999999999999999862         222332111      00 0


Q ss_pred             cccCCc----------------------------hhHHHHHHHhCCcc----C------CCCCccchHhHHHHhcCChH-
Q psy17138        113 AYDVGT----------------------------RGNQVVRELFGEDI----A------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       113 ~~~~~~----------------------------~~~~~~~~~~g~~~----~------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      .|.++.                            ......++.+|...    .      -+.|+.+|-.++..+..+|+ 
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  161 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF  161 (254)
T ss_pred             EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence            010000                            01122233344321    0      12356678888888889988 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.+++...+.+.+.+++.. .....+++.+|.+.+.  .++||+++++.
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~--~~~~d~v~~l~  215 (254)
T PRK10418        162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV--ARLADDVAVMS  215 (254)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH--HHhCCEEEEEE
Confidence             5688889999999999999888764 3345777779988663  47899999885

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.8e-11  Score=101.62  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=100.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++          |...++...+.        
T Consensus         9 ~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   84 (253)
T PRK14242          9 ARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE   84 (253)
T ss_pred             EeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence            5555555531    1367888999999999999999999999999999976          22223321110        


Q ss_pred             --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        + -.|.++      ...                      .....+.+|..     ..      -+.|+.+|-.++..+
T Consensus        85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence              0 011111      000                      01112223321     00      123566777888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  ..+||+++++.
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~--~~~~d~v~~l~  222 (253)
T PRK14242        165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQA--ARVSDVTAFFY  222 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHH--HHhCCEEEEEE
Confidence            88888  56889999999999999999988754 46778889998764  47899998875

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.22  E-value=3.5e-11  Score=94.38  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=102.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCC-----
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVG-----  117 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~-----  117 (212)
                      .+...-++|+    ....++++++..+.|.+|.|+|.|||||||++|+++-|     |...++...+.-..-..+     
T Consensus         8 ~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           8 EVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             ehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            3455566675    33678889999999999999999999999999999966     444444433311000000     


Q ss_pred             -------------------------------------------chh---HHHHHHHhCCc-------cCCCCCccchHhH
Q psy17138        118 -------------------------------------------TRG---NQVVRELFGED-------IALPDGSIDRKKL  144 (212)
Q Consensus       118 -------------------------------------------~~~---~~~~~~~~g~~-------~~~~~~~~~r~~l  144 (212)
                                                                 ...   -..++...|..       ..-+.|+.+|..+
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI  163 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI  163 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence                                                       000   11112222211       1124577789999


Q ss_pred             HHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        145 GAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       145 ~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ++.+.-+|.  +++++++.++|+..-++...++++.+..++.++.+|-|--+  ++....++|+
T Consensus       164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA--R~Vss~v~fL  225 (256)
T COG4598         164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA--RDVSSHVIFL  225 (256)
T ss_pred             HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH--HhhhhheEEe
Confidence            988888887  66888999999999999999988885555666668877554  4566666665

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.4e-11  Score=103.64  Aligned_cols=154  Identities=17%  Similarity=0.103  Sum_probs=101.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV  116 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~  116 (212)
                      .+++.+++|.. +  ...++++++...+|.+++|+|+||||||||+++|+++     |...+++..+.     . -.|.+
T Consensus         8 ~~~~l~~~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          8 VVNDVTVTWRN-G--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             EEEeEEEEecC-C--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence            35555555531 1  1356778899999999999999999999999999987     32223221110     0 00000


Q ss_pred             C-------------------------------c---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        117 G-------------------------------T---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       117 ~-------------------------------~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .                               .   ......++.+|..-.       -+.|+.+|-.++..+..+|+  
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            0                               0   011223344443211       12356678888888999988  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +++++.+.++|.....+.+.+.+.......+++.+|.+.+.  ..+||+++++
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~--~~~~d~v~~~  215 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV--TEFCDYTVMV  215 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence            56889999999999999999988753356777879988653  4689998665

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.22  E-value=5e-11  Score=97.39  Aligned_cols=133  Identities=14%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----cccccCC-------------------------
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----HRAYDVG-------------------------  117 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~~~~~~~-------------------------  117 (212)
                      ...+|.+++|+|+||||||||+++|+++     |...++...+.    +-.|.+.                         
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~   81 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG   81 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence            4567999999999999999999999986     33334332110    0001000                         


Q ss_pred             ------c---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC
Q psy17138        118 ------T---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE  179 (212)
Q Consensus       118 ------~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~  179 (212)
                            .   ......++.+|..-..       +.|+.+|..++..+..+|+  +++++.+.+++.....+.+.+.++..
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~  161 (223)
T TIGR03771        82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG  161 (223)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence                  0   0122334444432111       2356677788888889888  56888999999999999999987753


Q ss_pred             CCcEEEEEeccccccccccccCeEEEE
Q psy17138        180 SHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       180 ~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ....+++.+|.+.+.  .++||+++++
T Consensus       162 ~~~tvii~sH~~~~~--~~~~d~i~~l  186 (223)
T TIGR03771       162 AGTAILMTTHDLAQA--MATCDRVVLL  186 (223)
T ss_pred             cCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence            456788889988753  5789999876

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.22  E-value=1.6e-11  Score=98.30  Aligned_cols=156  Identities=14%  Similarity=0.117  Sum_probs=102.1

Q ss_pred             eechhhhhhhh--ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--Ce-----eeeCCccc-----cc-c
Q psy17138         49 LSSSNLRMREL--GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--AG-----LINCDQLG-----HR-A  113 (212)
Q Consensus        49 iss~~~r~~~~--g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--~~-----vi~~D~i~-----~~-~  113 (212)
                      +++.+++|...  +.....++++++...+|++++|+|+||||||||+++|+++-  .+     .++...+.     .. .
T Consensus         6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~   85 (194)
T cd03213           6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIG   85 (194)
T ss_pred             EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEE
Confidence            45555555321  00124678889999999999999999999999999999874  22     22221111     10 1


Q ss_pred             ccCC-------chhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEE
Q psy17138        114 YDVG-------TRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVI  184 (212)
Q Consensus       114 ~~~~-------~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~v  184 (212)
                      |.+.       ....+.+....... .-+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+++.......+
T Consensus        86 ~~~q~~~~~~~~t~~~~i~~~~~~~-~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  164 (194)
T cd03213          86 YVPQDDILHPTLTVRETLMFAAKLR-GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI  164 (194)
T ss_pred             EccCcccCCCCCcHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            1111       11222111100000 125677788889999999988  5688899999999999999998775335678


Q ss_pred             EEEecccc-ccccccccCeEEEEE
Q psy17138        185 VIEAAVLL-SAKWQDQVHEIWVTF  207 (212)
Q Consensus       185 vie~~~l~-e~~~~~~~d~v~~v~  207 (212)
                      ++.+|.+. +.  ..+||+++++.
T Consensus       165 ii~sh~~~~~~--~~~~d~v~~l~  186 (194)
T cd03213         165 ICSIHQPSSEI--FELFDKLLLLS  186 (194)
T ss_pred             EEEecCchHHH--HHhcCEEEEEe
Confidence            88899874 32  46899998875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=1.7e-11  Score=103.47  Aligned_cols=156  Identities=16%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             eechhhhhhhhc--cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-
Q psy17138         49 LSSSNLRMRELG--TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-  111 (212)
Q Consensus        49 iss~~~r~~~~g--~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-  111 (212)
                      +.+.+++|....  .....++++++...+|++++|+|+||||||||+++|.++     |...++...+.         + 
T Consensus         7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~   86 (280)
T PRK13633          7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNK   86 (280)
T ss_pred             EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhh
Confidence            555666664211  122477888999999999999999999999999999987     43334322211         0 


Q ss_pred             ccccCCc--------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        112 RAYDVGT--------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~~~~~~~--------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      -.|.+..        .                     ....+++.+|..-+       -+.|+.+|-.|+..+..+|.  
T Consensus        87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  166 (280)
T PRK13633         87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI  166 (280)
T ss_pred             eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            0011110        0                     01122233332211       12356677788888889988  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.++. .....+++.+|.+.+.  .. ||+++++.
T Consensus       167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~--~~-~d~v~~l~  218 (280)
T PRK13633        167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA--VE-ADRIIVMD  218 (280)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH--hc-CCEEEEEE
Confidence            5688999999999999999998775 3356778879999875  23 99998875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.5e-11  Score=111.46  Aligned_cols=142  Identities=17%  Similarity=0.113  Sum_probs=99.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-cccCCc-------h--
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-AYDVGT-------R--  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~~~~~~-------~--  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         +. .|.++.       .  
T Consensus        12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   91 (491)
T PRK10982         12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM   91 (491)
T ss_pred             EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence            356788999999999999999999999999999986     33333332110         00 010000       0  


Q ss_pred             ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                            ....+++.+|....       -+.|+.+|..++..+..+|+  +++++.+.+++....
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~  171 (491)
T PRK10982         92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN  171 (491)
T ss_pred             HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence                                  11223334443211       12367778889999999998  568999999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.++......+++-+|.+.+.  ..+||++++++
T Consensus       172 ~l~~~l~~l~~~g~tvii~tH~~~~~--~~~~d~i~~l~  208 (491)
T PRK10982        172 HLFTIIRKLKERGCGIVYISHKMEEI--FQLCDEITILR  208 (491)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            99999988753455777779998764  46899999885

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.22  E-value=1.2e-11  Score=95.58  Aligned_cols=135  Identities=19%  Similarity=0.165  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI  139 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  139 (212)
                      ...++++...+|.+++|+|+|||||||++++|.++-     ...++...+...       .........+.-..-+.|+.
T Consensus        14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~-------~~~~~~~~i~~~~qlS~G~~   86 (157)
T cd00267          14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL-------PLEELRRRIGYVPQLSGGQR   86 (157)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC-------CHHHHHhceEEEeeCCHHHH
Confidence            456677888899999999999999999999999862     222222111100       00001011110000246777


Q ss_pred             chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .|..++..+..+|.  +++++.+.+++.....+.+.+.+.......+++.+|.+.+.  ..+||+++.+.-
T Consensus        87 ~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~--~~~~d~i~~l~~  155 (157)
T cd00267          87 QRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA--ELAADRVIVLKD  155 (157)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEeC
Confidence            78888888888877  56888899999999999998887653346888889998775  357899988753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.21  E-value=2.9e-11  Score=99.47  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc------h-----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT------R-----  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~------~-----  119 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|.+..      .     
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI   97 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence            56778899999999999999999999999999987     33333331110        0 0011110      0     


Q ss_pred             ----------hHHHHHHHhC-----------Ccc-------CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        120 ----------GNQVVRELFG-----------EDI-------ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       120 ----------~~~~~~~~~g-----------~~~-------~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                ......+.++           ...       .-+.|+.+|..++..+..+|+  +++++.+.++|..++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~  177 (238)
T cd03249          98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL  177 (238)
T ss_pred             hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence                      0000111111           000       013355667788888888888  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.. ....+++.+|.+.+.  . +||+++++.
T Consensus       178 l~~~l~~~~-~g~~vi~~sh~~~~~--~-~~d~v~~l~  211 (238)
T cd03249         178 VQEALDRAM-KGRTTIVIAHRLSTI--R-NADLIAVLQ  211 (238)
T ss_pred             HHHHHHHhc-CCCEEEEEeCCHHHH--h-hCCEEEEEE
Confidence            999998775 456788889988764  3 699998874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.6e-11  Score=102.87  Aligned_cols=154  Identities=15%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~------  110 (212)
                      ..+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++          |...++...+.      
T Consensus        22 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         22 LEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             EEEEEEEEEeCC----ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            346676666642    2367788899999999999999999999999999985          22223221110      


Q ss_pred             ----c-ccccCC------chhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        111 ----H-RAYDVG------TRGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ----~-~~~~~~------~~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                          + -.|.+.      ...+                      ......++..     ..      -+.|+.+|-.|+.
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar  177 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR  177 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence                0 001110      0100                      0111222211     00      1235667778888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.+...+ ..+++.+|.+.+.  ..+||++++++
T Consensus       178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~~--~~~~d~v~~l~  237 (268)
T PRK14248        178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQA--LRVSDRTAFFL  237 (268)
T ss_pred             HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CEEEEEEeCHHHH--HHhCCEEEEEE
Confidence            8889988  668899999999999999999887543 5788889998653  57899999885

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.21  E-value=3.1e-11  Score=98.67  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +++.+++|..   .....+++++...+|.+++|+|+||||||||+++|+++     |...++...+.        . -.|
T Consensus         5 ~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           5 FENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            4555555531   11357778899999999999999999999999999986     43444332211        0 011


Q ss_pred             cCCc---------------------hhHHHHHHHhCC-----------c-------cCCCCCccchHhHHHHhcCChH--
Q psy17138        115 DVGT---------------------RGNQVVRELFGE-----------D-------IALPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~~~---------------------~~~~~~~~~~g~-----------~-------~~~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+..                     .........++.           .       ..-+.|+.+|-.|+..+.++|+  
T Consensus        82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll  161 (229)
T cd03254          82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL  161 (229)
T ss_pred             ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            1110                     000111111110           0       0013456678889999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.   ..||+++++.
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~  211 (229)
T cd03254         162 ILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTI---KNADKILVLD  211 (229)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHH---hhCCEEEEEe
Confidence            56889999999999999999987743 56788889988764   3499999884

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.21  E-value=2e-11  Score=101.42  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------------------ccc-c--
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------------------HRA-Y--  114 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------------------~~~-~--  114 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.                     +.+ |  
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   93 (252)
T TIGR03005        14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF   93 (252)
T ss_pred             eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence            356778899999999999999999999999999986     33333322110                     000 1  


Q ss_pred             -----cCCchh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        115 -----DVGTRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       115 -----~~~~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                           .+....                      ....++.+|..-.       -+.|+.+|-.++..+..+|+  +++++
T Consensus        94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  173 (252)
T TIGR03005        94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV  173 (252)
T ss_pred             cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                 000000                      1122333343211       12356677888888888888  56888


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++.....+.+.++++. .....+++.+|.+.+.  .++||+++++.
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~  221 (252)
T TIGR03005       174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA--REFADRVCFFD  221 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            99999999999999888765 3356777779998763  56899999885

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.21  E-value=2e-11  Score=111.55  Aligned_cols=158  Identities=16%  Similarity=0.107  Sum_probs=105.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe----------eeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG----------LINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~----------vi~~D~i~-------  110 (212)
                      .+++.+++|...+.....++++++...+|++++|+|+||||||||+++|+++-.+          .++...+.       
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   86 (529)
T PRK15134          7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL   86 (529)
T ss_pred             EEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHH
Confidence            3556666663211123467889999999999999999999999999999986321          22221110       


Q ss_pred             -----cc-cccCCc-------------------------------hhHHHHHHHhCCcc----C------CCCCccchHh
Q psy17138        111 -----HR-AYDVGT-------------------------------RGNQVVRELFGEDI----A------LPDGSIDRKK  143 (212)
Q Consensus       111 -----~~-~~~~~~-------------------------------~~~~~~~~~~g~~~----~------~~~~~~~r~~  143 (212)
                           +. .|.++.                               ......++.+|...    .      -+.|+.+|..
T Consensus        87 ~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~  166 (529)
T PRK15134         87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM  166 (529)
T ss_pred             HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHH
Confidence                 00 010000                               00112233344321    0      1235667889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+..+|+  +++++.+.++|.....+.+.++++. .....+++-+|.+.+.  ..+||+++++.
T Consensus       167 iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~dri~~l~  231 (529)
T PRK15134        167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV--RKLADRVAVMQ  231 (529)
T ss_pred             HHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH--HHhcCEEEEEE
Confidence            9999999998  6689999999999999999998875 3345777779998764  47899999875

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.6e-11  Score=105.64  Aligned_cols=159  Identities=14%  Similarity=0.081  Sum_probs=106.7

Q ss_pred             cceechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         47 DKLSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ..+.+.+++|.... .....++++++...+|.+++|+|+||||||||+++|+++     |...++.-.+.          
T Consensus        22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~  101 (320)
T PRK13631         22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT  101 (320)
T ss_pred             EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence            34666666664211 112478889999999999999999999999999999987     43344321000          


Q ss_pred             --------------ccc-ccCC--------ch---------------------hHHHHHHHhCCc--cCC------CCCc
Q psy17138        111 --------------HRA-YDVG--------TR---------------------GNQVVRELFGED--IAL------PDGS  138 (212)
Q Consensus       111 --------------~~~-~~~~--------~~---------------------~~~~~~~~~g~~--~~~------~~~~  138 (212)
                                    +.+ |.+.        ..                     .....++.+|..  ...      +.|+
T Consensus       102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq  181 (320)
T PRK13631        102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQ  181 (320)
T ss_pred             cccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHH
Confidence                          000 0000        00                     112223344432  111      2356


Q ss_pred             cchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        139 IDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       139 ~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|..|+..+..+|+  +++++.+.+++...+.+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~--~~~adri~vl~  250 (320)
T PRK13631        182 KRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV--LEVADEVIVMD  250 (320)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            778889999999998  56888999999999999999987653356777889998753  46899999875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.20  E-value=2.1e-11  Score=101.63  Aligned_cols=153  Identities=15%  Similarity=0.079  Sum_probs=101.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------  110 (212)
                      .+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.       
T Consensus         6 ~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~   81 (258)
T PRK14241          6 DVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV   81 (258)
T ss_pred             EEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence            35556666532    146778889999999999999999999999999998632          122221110       


Q ss_pred             ---cc-cccCC-------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        111 ---HR-AYDVG-------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ---~~-~~~~~-------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                         +. .|.+.       ...                      ...+.+.+|..     ..      -+.|+.+|-.++.
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  161 (258)
T PRK14241         82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR  161 (258)
T ss_pred             HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence               00 01000       000                      01122233321     00      1235667888888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||+++++.
T Consensus       162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~--~~~~d~i~~l~  221 (258)
T PRK14241        162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQA--ARVSDQTAFFN  221 (258)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH--HHhCCEEEEEe
Confidence            8889988  56889999999999999999987753 35778889988763  57899998885

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.9e-11  Score=103.29  Aligned_cols=154  Identities=16%  Similarity=0.110  Sum_probs=102.3

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc--------CCeeeeCCccc---------c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL--------GAGLINCDQLG---------H  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l--------g~~vi~~D~i~---------~  111 (212)
                      +.+.+++|...  ....++++++...+|.+++|+|+||||||||+++|+++        |...++...+.         +
T Consensus         8 i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~   85 (282)
T PRK13640          8 FKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK   85 (282)
T ss_pred             EEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence            55555555311  12367788899999999999999999999999999986        23333332211         0


Q ss_pred             ccccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        112 RAYDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~~~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      -.|.+.        ...                     ...+++.+|..-.       -+.|+.+|-.|+..+.++|+  
T Consensus        86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll  165 (282)
T PRK13640         86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII  165 (282)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            001110        000                     1122333443211       12356678888889999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.+.. .....+++.+|.+.+.   ..||+++++.
T Consensus       166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~---~~~d~i~~l~  217 (282)
T PRK13640        166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA---NMADQVLVLD  217 (282)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence            5688899999999999999998775 3356777779998764   3699998874

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.20  E-value=1.8e-11  Score=101.94  Aligned_cols=141  Identities=15%  Similarity=0.092  Sum_probs=95.7

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc--c-------------cCC--c
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA--Y-------------DVG--T  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~--~-------------~~~--~  118 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++.. .+   ..+.  +             .+.  .
T Consensus        19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~   98 (251)
T PRK09544         19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKK   98 (251)
T ss_pred             EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccH
Confidence            56778889999999999999999999999999986     22222211 00   0000  0             000  0


Q ss_pred             hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEe
Q psy17138        119 RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEA  188 (212)
Q Consensus       119 ~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~  188 (212)
                      ......++.+|..-+       -+.|+.+|..++..+..+|+  +++++.+.+++.....+.+.+.+.. .....+++.+
T Consensus        99 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivs  178 (251)
T PRK09544         99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS  178 (251)
T ss_pred             HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            112233444443211       13356778888888888888  5688999999999999999887765 3246777779


Q ss_pred             ccccccccccccCeEEEEE
Q psy17138        189 AVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       189 ~~l~e~~~~~~~d~v~~v~  207 (212)
                      |.+.+.  .++||+++++.
T Consensus       179 H~~~~i--~~~~d~i~~l~  195 (251)
T PRK09544        179 HDLHLV--MAKTDEVLCLN  195 (251)
T ss_pred             cCHHHH--HHhCCEEEEEC
Confidence            998763  46899998874

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.20  E-value=2.2e-11  Score=102.12  Aligned_cols=142  Identities=16%  Similarity=0.071  Sum_probs=94.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc--ccccc-ccC---------------C--c
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ--LGHRA-YDV---------------G--T  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~--i~~~~-~~~---------------~--~  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...  +.... +.+               +  .
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~  117 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR  117 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence            345778999999999999999999999999999987     322222210  00000 000               0  0


Q ss_pred             h----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEE
Q psy17138        119 R----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIV  185 (212)
Q Consensus       119 ~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vv  185 (212)
                      .    ....+.+.++..-.       -+.|+..|-.++..+..+|+  +++++.+.++|.....+.+.+.+.......++
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiI  197 (264)
T PRK13546        118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIF  197 (264)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            0    01122233332111       13456667788888888888  56888999999999999888877653456777


Q ss_pred             EEeccccccccccccCeEEEEE
Q psy17138        186 IEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       186 ie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+|.+.+.  ..+||+++++.
T Consensus       198 iisH~~~~i--~~~~d~i~~l~  217 (264)
T PRK13546        198 FVSHNLGQV--RQFCTKIAWIE  217 (264)
T ss_pred             EEcCCHHHH--HHHcCEEEEEE
Confidence            779987664  46899998874

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.20  E-value=3.2e-11  Score=106.70  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=114.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+.+..++|.    -..+.+++++....|++-+|.|.||+|||||+++|.++     |-.++++..+.           
T Consensus         5 l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           5 LEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             EEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            35778888886    44788899999999999999999999999999999986     33444433320           


Q ss_pred             ----c-------------ccc---cCC----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH
Q psy17138        111 ----H-------------RAY---DVG----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~-------------~~~---~~~----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~  153 (212)
                          |             .+.   .+.          ......+.+.+|.++-.       +-|..+|-.+-..+|++++
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~  160 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR  160 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence                0             000   000          01244556677776521       1256788888899999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        .++++++.+.|.-.+++...++.+....+.|++=+|-|-|.  ..+||++.++.
T Consensus       161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev--~~iaDrvTVLR  214 (501)
T COG3845         161 LLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV--MAIADRVTVLR  214 (501)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH--HHhhCeeEEEe
Confidence              56899999999999999999998885555555559999885  67999998764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.20  E-value=3.2e-11  Score=109.80  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-----------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-----------  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-----------  118 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         + -.|.+..           
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  357 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS  357 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence            57888999999999999999999999999999986     33333321110         0 0010000           


Q ss_pred             -----------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHH
Q psy17138        119 -----------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLN  159 (212)
Q Consensus       119 -----------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~  159 (212)
                                                   .....+++.+|..  ..+      +.|+.+|..|+..+..+|+  +++++.
T Consensus       358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt  437 (510)
T PRK09700        358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT  437 (510)
T ss_pred             HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence                                         0012334455542  111      3467778889988888988  568999


Q ss_pred             hhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        160 QAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       160 ~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+++.....+.+.+.++......+++-+|.+.+.  ..+||+++++.
T Consensus       438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~--~~~~d~i~~l~  483 (510)
T PRK09700        438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI--ITVCDRIAVFC  483 (510)
T ss_pred             CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH--HhhCCEEEEEE
Confidence            99999999999999987753355778889998664  47899998874

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=3.7e-11  Score=100.86  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=102.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-A  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~  113 (212)
                      .+.+.+++|...  ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. .
T Consensus         9 ~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   86 (269)
T PRK13648          9 VFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG   86 (269)
T ss_pred             EEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence            355555655321  11356778899999999999999999999999999987     33333321110        00 0


Q ss_pred             ccCCc-----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 YDVGT-----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 ~~~~~-----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      |.+..                             .....+.+.+|..-+       -+.|+.+|-.++..+..+|+  ++
T Consensus        87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL  166 (269)
T PRK13648         87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL  166 (269)
T ss_pred             EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            10000                             011223344443211       12356677788889999988  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.  . .||+++++.
T Consensus       167 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~--~-~~d~i~~l~  216 (269)
T PRK13648        167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA--M-EADHVIVMN  216 (269)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH--h-cCCEEEEEE
Confidence            88999999999999999988765 3356778889998765  3 499998875

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.20  E-value=2.3e-11  Score=103.82  Aligned_cols=53  Identities=34%  Similarity=0.522  Sum_probs=49.5

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL   59 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~   59 (212)
                      +||||+||..+|.+||+.|+|+||+||+|++|+++. +     .++.++||+++|....
T Consensus        88 ~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~-~-----~d~~~iSSTrIr~~ei  140 (322)
T PRK01170         88 IIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVL-A-----EDLFPISSTRIINGEI  140 (322)
T ss_pred             EEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEE-c-----CCCCcccHHHHhhhhc
Confidence            599999999999999999999999999999999999 6     5678999999999865

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.20  E-value=3.2e-11  Score=97.63  Aligned_cols=142  Identities=20%  Similarity=0.215  Sum_probs=95.7

Q ss_pred             cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----------cccCCch-------h
Q psy17138         63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----------AYDVGTR-------G  120 (212)
Q Consensus        63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----------~~~~~~~-------~  120 (212)
                      ...+.++++..++|++++|+|+||+||||+++.|+++     |...+++.++.+.          .|.|...       .
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV   95 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV   95 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence            4677889999999999999999999999999999987     4445555444211          0111110       0


Q ss_pred             --------------------HHHHHHHhCCc--------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        121 --------------------NQVVRELFGED--------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       121 --------------------~~~~~~~~g~~--------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                                          .+.+.+.|..-        -.-+.|+.+...++..+..+|.  +++++...+.|.+..++
T Consensus        96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I  175 (237)
T COG0410          96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI  175 (237)
T ss_pred             HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence                                22233333210        0013455667788889999998  56889999999999999


Q ss_pred             HHHHHhhc-CCC-cEEEEEeccccccccccccCeEEEEE
Q psy17138        171 KEEIARLS-ESH-KVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       171 ~~~i~~~~-~~~-~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.|++++ ... .++++|=+ ...+  .++.|+..++.
T Consensus       176 ~~~i~~l~~~~g~tIlLVEQn-~~~A--l~iaDr~yvle  211 (237)
T COG0410         176 FEAIKELRKEGGMTILLVEQN-ARFA--LEIADRGYVLE  211 (237)
T ss_pred             HHHHHHHHHcCCcEEEEEecc-HHHH--HHhhCEEEEEe
Confidence            99999987 333 45555433 3332  46788887765

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.20  E-value=2.4e-11  Score=99.32  Aligned_cols=141  Identities=20%  Similarity=0.174  Sum_probs=95.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----C-----eeeeCCccc----------cc-cccCCc----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----A-----GLINCDQLG----------HR-AYDVGT----  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~-----~vi~~D~i~----------~~-~~~~~~----  118 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++-     .     ..++...+.          +. .|.+..    
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   93 (227)
T cd03260          14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF   93 (227)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence            3567788999999999999999999999999999864     2     122221110          00 011110    


Q ss_pred             --h----------------------hHHHHHHHhCCccC---------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        119 --R----------------------GNQVVRELFGEDIA---------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       119 --~----------------------~~~~~~~~~g~~~~---------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                        .                      ....+++.+|..-.         -+.|+.+|..++..+..+|+  +++++.+.++
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  173 (227)
T cd03260          94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD  173 (227)
T ss_pred             cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence              0                      01122333343211         12245567788888888887  5688999999


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.....+.+.+.+.... ..+++.+|.+.+.  .++||+++++.
T Consensus       174 ~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~--~~~~d~i~~l~  214 (227)
T cd03260         174 PISTAKIEELIAELKKE-YTIVIVTHNMQQA--ARVADRTAFLL  214 (227)
T ss_pred             HHHHHHHHHHHHHHhhC-cEEEEEeccHHHH--HHhCCEEEEEe
Confidence            99999999999887644 6788889998653  46899998875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.20  E-value=2.7e-11  Score=100.27  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc----------cc-cccCC-----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG----------HR-AYDVG-----  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~----------~~-~~~~~-----  117 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++..          ..++...+.          +. .|.+.     
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   94 (247)
T TIGR00972        15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF   94 (247)
T ss_pred             eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence            35678899999999999999999999999999997632          123221111          00 01000     


Q ss_pred             -ch----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        118 -TR----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       118 -~~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                       ..                      .....++.+|..     ..      -+.|+.+|-.++..+..+|+  +++++.+.
T Consensus        95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~  174 (247)
T TIGR00972        95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA  174 (247)
T ss_pred             CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence             00                      011222333432     11      12356678888888888988  56889999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.....+.+.+.+...+ ..+++.+|.+.+.  ..+||++++++
T Consensus       175 LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~--~~~~d~i~~l~  217 (247)
T TIGR00972       175 LDPIATGKIEELIQELKKK-YTIVIVTHNMQQA--ARISDRTAFFY  217 (247)
T ss_pred             CCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHH--HHhCCEEEEEE
Confidence            9999999999999877543 6788889998764  47899998875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=2.7e-11  Score=100.64  Aligned_cols=152  Identities=13%  Similarity=0.045  Sum_probs=100.3

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++-          ...++...+.        
T Consensus         7 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (253)
T PRK14267          7 TVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE   82 (253)
T ss_pred             EEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence            4555555531    13678889999999999999999999999999999862          2223321111        


Q ss_pred             --cc-cccCC-------chh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        111 --HR-AYDVG-------TRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 --~~-~~~~~-------~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                        +. .|.+.       ...                       .....+.+|..     ..      -+.|+.+|-.++.
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  162 (253)
T PRK14267         83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR  162 (253)
T ss_pred             HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence              00 01100       000                       11122333321     01      1235567778888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||+++++.
T Consensus       163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~  222 (253)
T PRK14267        163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQA--ARVSDYVAFLY  222 (253)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHH--HhhCCEEEEEE
Confidence            8888888  56888999999999999999987753 36788889998663  56899998875

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=2.1e-11  Score=103.09  Aligned_cols=155  Identities=14%  Similarity=0.160  Sum_probs=104.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-  111 (212)
                      .+++.+++|.. +  ...++++++...+|++++|+|+||||||||+++|+++     |...+++..+.          . 
T Consensus         7 ~~~~l~~~~~~-~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          7 KVEELNYNYSD-G--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             EEEeEEEEeCC-C--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            35666666631 1  2367888999999999999999999999999999987     43334332210          0 


Q ss_pred             ccccCCc--------hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        112 RAYDVGT--------RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~~~~~~~--------~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      -.|.+..        ..                     .....+.+|..-+       -+.|+.+|..++..+..+|.  
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL  163 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  163 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            0011110        00                     1122233332211       12356678888888889988  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.+++.....+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~--~~~~dri~~l~  216 (283)
T PRK13636        164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV--PLYCDNVFVMK  216 (283)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            5688999999999999999888775 3356788889999774  46899998874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=2.6e-11  Score=100.51  Aligned_cols=152  Identities=14%  Similarity=0.063  Sum_probs=100.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.        
T Consensus         6 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   81 (250)
T PRK14247          6 IRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR   81 (250)
T ss_pred             EEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence            4555555531    135678899999999999999999999999999998632          223221111        


Q ss_pred             ccc-cc-------CCchh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 HRA-YD-------VGTRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 ~~~-~~-------~~~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                      ..+ |.       +....                       ....++.+|..     ..      -+.|+.+|-.++..+
T Consensus        82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  161 (250)
T PRK14247         82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL  161 (250)
T ss_pred             ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            000 10       00000                       11222333421     01      123556778888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||+++++.
T Consensus       162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~  219 (250)
T PRK14247        162 AFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQA--ARISDYVAFLY  219 (250)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence            88888  56889999999999999999988754 46788889988653  46899998875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.20  E-value=3.3e-11  Score=98.50  Aligned_cols=157  Identities=10%  Similarity=0.098  Sum_probs=99.2

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-----cc-cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-----HR-AY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-----~~-~~  114 (212)
                      +.+..+++...+.....++++++...+|++++|+|+||||||||+++|+++-.        ..++...+.     +. .|
T Consensus         6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~   85 (226)
T cd03234           6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY   85 (226)
T ss_pred             eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence            44444555322112346777889999999999999999999999999997632        122221110     00 01


Q ss_pred             cC-------Cchh------------------------HHH-HHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        115 DV-------GTRG------------------------NQV-VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~-------~~~~------------------------~~~-~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+       ....                        ... .+..++....       -+.|+.+|-.++..+..+|+  
T Consensus        86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il  165 (226)
T cd03234          86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL  165 (226)
T ss_pred             eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence            00       0000                        001 2222232111       12355667778888888887  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc-ccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL-SAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~-e~~~~~~~d~v~~v~  207 (212)
                      +++++...+++.....+.+.+.+.......+++.+|.+. +.  ..+||+++++.
T Consensus       166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~--~~~~d~i~~l~  218 (226)
T cd03234         166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL--FRLFDRILLLS  218 (226)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH--HHhCCEEEEEe
Confidence            568888999999999999999876533567788788873 43  46899999876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.20  E-value=3.1e-11  Score=100.10  Aligned_cols=153  Identities=13%  Similarity=0.116  Sum_probs=99.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcc--------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQL--------  109 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i--------  109 (212)
                      .+.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++          |...++...+        
T Consensus         7 ~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          7 QVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             EEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            34555555531    1356778899999999999999999999999999976          2222332111        


Q ss_pred             --cc-ccccCC------chhHHH----------------------HHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138        110 --GH-RAYDVG------TRGNQV----------------------VRELFGED-----IA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       110 --~~-~~~~~~------~~~~~~----------------------~~~~~g~~-----~~------~~~~~~~r~~l~~~  147 (212)
                        .+ -.|.+.      ....+.                      ..+.+|..     ..      -+.|+.+|..++..
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14239         83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV  162 (252)
T ss_pred             hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence              00 001111      001110                      11122210     00      12355667788888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||+++++.
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~--~~~~d~i~~l~  221 (252)
T PRK14239        163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQA--SRISDRTGFFL  221 (252)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHH--HHhCCEEEEEE
Confidence            888888  56889999999999999999987753 36777879988653  46899999885

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=2.6e-11  Score=100.70  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=100.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------  110 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.       
T Consensus         6 ~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          6 KLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV   81 (252)
T ss_pred             EEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence            35555555531    136778889999999999999999999999999998731          122221110       


Q ss_pred             ---c-ccccCC-------ch----------------------hHHHHHHHhCCcc-----C------CCCCccchHhHHH
Q psy17138        111 ---H-RAYDVG-------TR----------------------GNQVVRELFGEDI-----A------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ---~-~~~~~~-------~~----------------------~~~~~~~~~g~~~-----~------~~~~~~~r~~l~~  146 (212)
                         + -.|.+.       ..                      .....++.+|...     .      -+.|+.+|..++.
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence               0 001000       00                      0112223344210     0      1235666778888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++...+.+.+.++++..+ ..+++.+|.+.+.  ..+||+++++.
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~--~~~~d~i~~l~  221 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNMQQA--ARVSDYTAFFY  221 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CcEEEEECCHHHH--HhhCCEEEEEE
Confidence            8888888  568888899999999999998887543 5777779988663  47899998875

>KOG0057|consensus

Probab=99.19  E-value=6.2e-11  Score=105.99  Aligned_cols=140  Identities=17%  Similarity=0.144  Sum_probs=95.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcccc---c------cccCCc------------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGH---R------AYDVGT------------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~---~------~~~~~~------------  118 (212)
                      +.+++++++.++|+.+||+|+|||||||++|+|-++    |-..+|+-++..   +      -|.|+.            
T Consensus       366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI  445 (591)
T KOG0057|consen  366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNI  445 (591)
T ss_pred             ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHh
Confidence            467889999999999999999999999999999875    556666544310   0      011111            


Q ss_pred             ---------hhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        119 ---------RGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       119 ---------~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                               +..-+.++.+|..                 . .-+.|+.+|-.+++.+..||.  ++++.++-++....++
T Consensus       446 ~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~  525 (591)
T KOG0057|consen  446 KYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETERE  525 (591)
T ss_pred             hcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHH
Confidence                     0111122222211                 0 114678899999999999988  5577788888887777


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+-+... ..+++++.-.|.+.-.   +-||++++++
T Consensus       526 i~~~i~~~-~~~rTvI~IvH~l~ll---~~~DkI~~l~  559 (591)
T KOG0057|consen  526 ILDMIMDV-MSGRTVIMIVHRLDLL---KDFDKIIVLD  559 (591)
T ss_pred             HHHHHHHh-cCCCeEEEEEecchhH---hcCCEEEEEE
Confidence            77776653 4556666668887543   5799999986

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.19  E-value=3.2e-11  Score=109.31  Aligned_cols=141  Identities=14%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCCc----------h
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVGT----------R  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~~----------~  119 (212)
                      .++++++..++|+++||+|+||||||||+++|+++     |...++...+..          -.|.++.          .
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~  342 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD  342 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence            56778899999999999999999999999999986     333343322110          0011100          0


Q ss_pred             ---------------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        120 ---------------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       120 ---------------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                                                 .....+..++..  ..+      +.|+.+|..++..+..+|+  +++++.+.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gL  422 (491)
T PRK10982        343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI  422 (491)
T ss_pred             HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence                                       011222333321  111      3466778889988989998  668999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.....+.+.+.++......+++-+|.+.+.  ..+||+++++.
T Consensus       423 D~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~--~~~~d~v~~l~  465 (491)
T PRK10982        423 DVGAKFEIYQLIAELAKKDKGIIIISSEMPEL--LGITDRILVMS  465 (491)
T ss_pred             ChhHHHHHHHHHHHHHHCCCEEEEECCChHHH--HhhCCEEEEEE
Confidence            99999999999987763456777889998774  57999999885

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.19  E-value=2e-11  Score=110.98  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~  113 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+.         +. .
T Consensus         7 ~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~   82 (501)
T PRK11288          7 FDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA   82 (501)
T ss_pred             EeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence            4455555531    1356788899999999999999999999999999986     33333321110         00 0


Q ss_pred             ccCC-------c------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        114 YDVG-------T------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       114 ~~~~-------~------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      |.+.       .                        .....+++.+|....       -+.|+.+|-.++..+..+|+  
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (501)
T PRK11288         83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI  162 (501)
T ss_pred             EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            1000       0                        011223444454211       12367778889989999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.++|.....+.+.+.+.......+++-+|.+.+.  ..+||+++++.
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~--~~~~d~i~~l~  214 (501)
T PRK11288        163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI--FALCDAITVFK  214 (501)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            66899999999999999999887753356777779998764  47899999875

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.19  E-value=5.4e-11  Score=97.52  Aligned_cols=140  Identities=17%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe---------eeeCCccc------c-ccccCC---------ch-
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG---------LINCDQLG------H-RAYDVG---------TR-  119 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~---------vi~~D~i~------~-~~~~~~---------~~-  119 (212)
                      ++++++...+|.+++|+|+||||||||+++|+++-.+         .++...+.      + -.|.+.         .. 
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~   81 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM   81 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence            3567788899999999999999999999999986322         22221110      0 001100         00 


Q ss_pred             --------------------hHHHHHHHhCCc----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH
Q psy17138        120 --------------------GNQVVRELFGED----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL  167 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~  167 (212)
                                          ....+++.+|..    ..      -+.|+.+|-.++..+..+|+  +++++.+.+++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~  161 (230)
T TIGR02770        82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ  161 (230)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence                                011223333332    11      12356677888888889988  66889999999999


Q ss_pred             HHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        168 AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       168 ~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~  200 (230)
T TIGR02770       162 ARVLKLLRELRQLFGTGILLITHDLGVV--ARIADEVAVMD  200 (230)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999888765 3356888889998764  46899999885

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.19  E-value=3.2e-11  Score=98.47  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=102.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-R  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~  112 (212)
                      ..+++.+++|...+ ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -
T Consensus        12 l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   90 (226)
T cd03248          12 VKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV   90 (226)
T ss_pred             EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhE
Confidence            45667777664211 12467888999999999999999999999999999987     33333321110        0 0


Q ss_pred             cccCCc------hh------------------------HHHHHHHh--CCccC-C------CCCccchHhHHHHhcCChH
Q psy17138        113 AYDVGT------RG------------------------NQVVRELF--GEDIA-L------PDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       113 ~~~~~~------~~------------------------~~~~~~~~--g~~~~-~------~~~~~~r~~l~~~vf~~~~  153 (212)
                      .|.+..      ..                        ....+..+  |.... .      +.|+.+|-.++..+..+|+
T Consensus        91 ~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~  170 (226)
T cd03248          91 SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ  170 (226)
T ss_pred             EEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            010000      00                        01112223  22211 1      2356667788888889988


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.   ..||+++++.
T Consensus       171 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~  222 (226)
T cd03248         171 VLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTV---ERADQILVLD  222 (226)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH---HhCCEEEEec
Confidence              56889999999999999999988754 36777879998765   2499999875

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=4.4e-11  Score=108.84  Aligned_cols=158  Identities=11%  Similarity=0.035  Sum_probs=106.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCccc---------c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQLG---------H  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i~---------~  111 (212)
                      ..+++.+++|...+ ....++++++..++|++++|+|+||||||||+++|+++-.      ..++...+.         .
T Consensus       260 l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        260 LEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             EEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            34666666653111 1246788999999999999999999999999999998632      122221110         0


Q ss_pred             -ccccC----------C----------------------c----hhHHHHHHHhCCc--cCC------CCCccchHhHHH
Q psy17138        112 -RAYDV----------G----------------------T----RGNQVVRELFGED--IAL------PDGSIDRKKLGA  146 (212)
Q Consensus       112 -~~~~~----------~----------------------~----~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~  146 (212)
                       -.|.+          .                      .    .....+++.+|..  ..+      +.|+.+|..++.
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~  418 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK  418 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence             00000          0                      0    0112334445542  111      346777888998


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.++......|++-+|.+.+.  ..+||+++++.
T Consensus       419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~--~~~~d~v~~l~  479 (506)
T PRK13549        419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV--LGLSDRVLVMH  479 (506)
T ss_pred             HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            8888888  56899999999999999999887763456788889998764  47899998874

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.19  E-value=2.1e-11  Score=100.47  Aligned_cols=142  Identities=17%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCCc-------h-----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVGT-------R-----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~~-------~-----  119 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.      + -.|.+..       .     
T Consensus        14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl   93 (237)
T TIGR00968        14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI   93 (237)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence            356778889999999999999999999999999986     33333322110      0 0111110       0     


Q ss_pred             ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                      .....++.++..-.       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  173 (237)
T TIGR00968        94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL  173 (237)
T ss_pred             HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence                            01122333333210       12356667788888888888  568889999999999999999


Q ss_pred             HhhcCC-CcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.... ...+++.+|.+.+.  .++||+++.++
T Consensus       174 ~~~~~~~~~tvli~sH~~~~~--~~~~d~i~~l~  205 (237)
T TIGR00968       174 RKLHDEVHVTTVFVTHDQEEA--MEVADRIVVMS  205 (237)
T ss_pred             HHHHHhcCCEEEEEeCCHHHH--HhhcCEEEEEE
Confidence            876532 56788889988653  57899999885

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.19  E-value=5e-11  Score=98.87  Aligned_cols=154  Identities=15%  Similarity=0.121  Sum_probs=100.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H-  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~-  111 (212)
                      .+++.+++|.  +  ...++++++...+|.+++|+|+||||||||+++|+++       |...++...+.        + 
T Consensus         9 ~~~~l~~~~~--~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (252)
T CHL00131          9 EIKNLHASVN--E--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL   84 (252)
T ss_pred             EEEeEEEEeC--C--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence            4555555553  1  1367888999999999999999999999999999985       32333221110        0 


Q ss_pred             cc-ccCCc-------h----------------------------hHHHHHHHhCCc--cC-------CCCCccchHhHHH
Q psy17138        112 RA-YDVGT-------R----------------------------GNQVVRELFGED--IA-------LPDGSIDRKKLGA  146 (212)
Q Consensus       112 ~~-~~~~~-------~----------------------------~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~  146 (212)
                      .. |.+..       .                            .....+..+|..  ..       -+.|+.+|..++.
T Consensus        85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~  164 (252)
T CHL00131         85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ  164 (252)
T ss_pred             eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence            00 00000       0                            011223333332  11       1335567788888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++...+.+.+.+.+.......+++.+|.+...  ... ||+++++.
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~--~~~~~d~i~~l~  226 (252)
T CHL00131        165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL--DYIKPDYVHVMQ  226 (252)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HhhhCCEEEEEe
Confidence            9999998  66889999999999999999987753356777779987654  234 89998874

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.19  E-value=4.2e-11  Score=108.80  Aligned_cols=141  Identities=13%  Similarity=0.094  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCC------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVG------------  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~------------  117 (212)
                      .++++++...+|.+++|+|+||||||||+++|.++     |...++...+..          -.|.++            
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t  347 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS  347 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence            56778899999999999999999999999999986     333443211100          000000            


Q ss_pred             ---------------------c----hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        118 ---------------------T----RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       118 ---------------------~----~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                                           .    .....++..+|..  ..+      +.|+.+|-.++..+.++|+  +++++.+.+
T Consensus       348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L  427 (501)
T PRK11288        348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI  427 (501)
T ss_pred             HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence                                 0    0112334445541  111      3467778889989989998  568999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++...+.+.+.+.++......+++-+|.+.+.  ..+||+++++.
T Consensus       428 D~~~~~~l~~~l~~l~~~g~tviivsHd~~~~--~~~~d~i~~l~  470 (501)
T PRK11288        428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV--LGVADRIVVMR  470 (501)
T ss_pred             CHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HhhCCEEEEEE
Confidence            99999999999887763355777779999764  57999999885

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.19  E-value=5.4e-11  Score=96.68  Aligned_cols=153  Identities=12%  Similarity=0.071  Sum_probs=97.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------GH  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------~~  111 (212)
                      +++..+++...   ...++++++...+|.+++|+|+||||||||+++|+++     |...++...+            .+
T Consensus         3 ~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           3 VTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            55666665311   2467778899999999999999999999999999986     3333322111            00


Q ss_pred             -ccccCCc------h--------------hHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCCh
Q psy17138        112 -RAYDVGT------R--------------GNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       112 -~~~~~~~------~--------------~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~  152 (212)
                       -.|.+..      .              ......+.++..                 . .-+.|+.+|-.|+..+..+|
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  159 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT  159 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence             0011110      0              011222222210                 0 01235667888998999998


Q ss_pred             H--HHHHHHhhhhHHHHHHHHH--HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKE--EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~--~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.+++.....+.+  .+.........+++.+|.+...   ..||+++++.
T Consensus       160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~---~~~d~i~~l~  215 (218)
T cd03290         160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL---PHADWIIAMK  215 (218)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH---hhCCEEEEec
Confidence            8  5688899999998888876  4444443346778889998654   3699998774

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=3.1e-11  Score=110.41  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=101.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-Cccc---ccc-ccCC-
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-DQLG---HRA-YDVG-  117 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-D~i~---~~~-~~~~-  117 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++. ..++   ... ..+. 
T Consensus         4 i~~ls~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~   79 (530)
T PRK15064          4 TANITMQFGA----KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEF   79 (530)
T ss_pred             EEEEEEEeCC----cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCC
Confidence            4555555531    1367889999999999999999999999999999986     3222321 1110   000 0000 


Q ss_pred             ----------------------------------------------------chhHHHHHHHhCCcc-C-------CCCC
Q psy17138        118 ----------------------------------------------------TRGNQVVRELFGEDI-A-------LPDG  137 (212)
Q Consensus       118 ----------------------------------------------------~~~~~~~~~~~g~~~-~-------~~~~  137 (212)
                                                                          ......++..+|... .       -+.|
T Consensus        80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG  159 (530)
T PRK15064         80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG  159 (530)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence                                                                001122334444421 0       1346


Q ss_pred             ccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        138 SIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       138 ~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+|..++..+..+|+  +++++.+.++|.....+.+.+.+  . ...+++-+|.+...  ..+||+++++.
T Consensus       160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~-~~tiiivsHd~~~~--~~~~d~i~~l~  226 (530)
T PRK15064        160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--R-NSTMIIISHDRHFL--NSVCTHMADLD  226 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--C-CCeEEEEeCCHHHH--HhhcceEEEEe
Confidence            7778899999999998  67899999999999999988864  2 35677779998763  57899999886

>PTZ00301 uridine kinase; Provisional

Probab=99.18  E-value=2.5e-11  Score=98.47  Aligned_cols=126  Identities=17%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c----CC---eeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L----GA---GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAI  147 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l----g~---~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~  147 (212)
                      ..+|||.|+|||||||+++.|.. +    |.   .++..|.     |.........  ...+..-++.-..+|...+.+.
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~-----yy~~~~~~~~--~~~~~~~~d~p~a~D~~~l~~~   75 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF-----YYRDQSNIPE--SERAYTNYDHPKSLEHDLLTTH   75 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC-----CccCcccCCH--HHhcCCCCCChhhhCHHHHHHH
Confidence            47999999999999999987752 2    32   2344443     2211100000  0011111111123333333222


Q ss_pred             hcCChHHHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138        148 VFSNKDEMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       148 vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~  212 (212)
                      +    ..+..-..+-.|.+......+..+..  .+.+++++||.+++ ...+.+++|..|+|++|.++
T Consensus        76 l----~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~  139 (210)
T PTZ00301         76 L----RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDI  139 (210)
T ss_pred             H----HHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhH
Confidence            2    11111122344555554443332211  45689999999997 45688899999999999874

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=2.6e-11  Score=101.49  Aligned_cols=153  Identities=17%  Similarity=0.089  Sum_probs=99.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------  110 (212)
                      ++++.+++|..    ...++++++...+|++++|+|+||||||||+++|+++          |...++...+.       
T Consensus        12 ~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   87 (264)
T PRK14243         12 RTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV   87 (264)
T ss_pred             EEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence            35555555531    1356788999999999999999999999999999975          22223321110       


Q ss_pred             ---cc-cccCC------chhH--------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138        111 ---HR-AYDVG------TRGN--------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIVF  149 (212)
Q Consensus       111 ---~~-~~~~~------~~~~--------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf  149 (212)
                         +. .|.+.      ....                    ....+..+..     ..      -+.|+.+|..++..+.
T Consensus        88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence               00 01010      0000                    0111222210     00      1235567778888888


Q ss_pred             CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|+  +++++.+.+++.....+.+.+.+...+ ..+++.+|.+.+.  ..+||+++++.
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tvi~vtH~~~~~--~~~~d~v~~l~  224 (264)
T PRK14243        168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQA--ARVSDMTAFFN  224 (264)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH--HHhCCEEEEEe
Confidence            8888  568888999999999999999877543 5777779988764  57999999986

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.18  E-value=5.6e-11  Score=97.45  Aligned_cols=140  Identities=17%  Similarity=0.169  Sum_probs=94.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cccCC------chh---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AYDVG------TRG---  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~~~~------~~~---  120 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. .|.+.      ...   
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en   95 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN   95 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence            356778889999999999999999999999999987     33333322110        00 01110      000   


Q ss_pred             ------------H---------HHHHHHh--CCcc-------CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        121 ------------N---------QVVRELF--GEDI-------ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       121 ------------~---------~~~~~~~--g~~~-------~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                  .         ....+.+  |...       .-+.|+.+|-.++..+..+|+  +++++.+.+++...+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  175 (234)
T cd03251          96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER  175 (234)
T ss_pred             hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence                        0         0111111  1110       012356678888888989988  568889999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+... ...+++.+|.+.+.  . .||+++++.
T Consensus       176 ~l~~~l~~~~~-~~tii~~sh~~~~~--~-~~d~v~~l~  210 (234)
T cd03251         176 LVQAALERLMK-NRTTFVIAHRLSTI--E-NADRIVVLE  210 (234)
T ss_pred             HHHHHHHHhcC-CCEEEEEecCHHHH--h-hCCEEEEec
Confidence            99999987754 46788889998775  2 399999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.18  E-value=2.3e-11  Score=112.42  Aligned_cols=139  Identities=15%  Similarity=0.108  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---cccc-ccCCc----------------hh
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHRA-YDVGT----------------RG  120 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~~-~~~~~----------------~~  120 (212)
                      ++.+++...+|++++|+|+||||||||+++|+++     |...++. .+   ..+. ..+..                ..
T Consensus       355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~-~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~  433 (590)
T PRK13409        355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL-KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYY  433 (590)
T ss_pred             EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee-eEEEecccccCCCCCcHHHHHHHHhhhcChHHH
Confidence            5667788899999999999999999999999986     2222220 01   0000 00000                01


Q ss_pred             HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecc
Q psy17138        121 NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAV  190 (212)
Q Consensus       121 ~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~  190 (212)
                      ...+++.+|..-.       -+.|+.+|..++..+.++|+  +++++.+.+++..+..+.+.++++. .....+++-+|.
T Consensus       434 ~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD  513 (590)
T PRK13409        434 KSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD  513 (590)
T ss_pred             HHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            1233444443211       13567789999999999998  5689999999999999999998875 335677777999


Q ss_pred             ccccccccccCeEEEEE
Q psy17138        191 LLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       191 l~e~~~~~~~d~v~~v~  207 (212)
                      +.++  ..+||++++++
T Consensus       514 ~~~~--~~~aDrvivl~  528 (590)
T PRK13409        514 IYMI--DYISDRLMVFE  528 (590)
T ss_pred             HHHH--HHhCCEEEEEc
Confidence            8775  46899999875

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.18  E-value=1.3e-11  Score=100.87  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHH--HHHHhCCccCCCCCccchHhHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQV--VRELFGEDIALPDGSIDRKKLGAI  147 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~r~~l~~~  147 (212)
                      ++||.|+|||||||+++.|.++-        ..+++.|..    |.+.. ....  .....|.     .+.++...+...
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f----~~~~~-~~~~~~~~~~~g~-----p~~~d~~~l~~~   70 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF----LYPNK-ELIERGLMDRKGF-----PESYDMEALLKF   70 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc----cCcHH-HHHHhhhhhcCCC-----cccCCHHHHHHH
Confidence            58999999999999999998641        234555542    22111 1110  1111111     123343333211


Q ss_pred             hcCChHHHHH-HHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccccc------cccccCeEEEEEeCCC
Q psy17138        148 VFSNKDEMNK-LNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLSAK------WQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       148 vf~~~~~~~~-~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e~~------~~~~~d~v~~v~~~~~  211 (212)
                      +    ..+.. ...+..|.+.+...+......   .+.+++++||.+++...      +.+++|..|+|++|.+
T Consensus        71 L----~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~  140 (220)
T cd02025          71 L----KDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADED  140 (220)
T ss_pred             H----HHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHH
Confidence            1    11111 123555666666554443221   45679999998777543      7789999999999975

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=4e-11  Score=99.41  Aligned_cols=153  Identities=16%  Similarity=0.112  Sum_probs=100.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------  110 (212)
                      .+++.++.|..    ...++++++...+|++++|+|+||||||||+++|+++          |...++...+.       
T Consensus         5 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14240          5 SVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN   80 (250)
T ss_pred             EEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            35555555531    1366788999999999999999999999999999985          22223321110       


Q ss_pred             ---cc-cccCC------chhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138        111 ---HR-AYDVG------TRGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~~-~~~~~------~~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~  147 (212)
                         +. .|.+.      ...++                      ...+.++..     ..      -+.|+.+|..++..
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  160 (250)
T PRK14240         81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA  160 (250)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence               00 01111      00100                      111122210     00      12356678888888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||++++++
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~v~~l~  219 (250)
T PRK14240        161 LAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQA--SRISDKTAFFL  219 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHH--HhhCCEEEEEE
Confidence            889988  56888999999999999998887753 45778889988653  57899998885

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.18  E-value=4.3e-11  Score=99.88  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-----------eeCCccc-------cc----cccCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-----------INCDQLG-------HR----AYDVG  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-----------i~~D~i~-------~~----~~~~~  117 (212)
                      .+++++ ...+|.+++|+|+||||||||+++|+++     |...           ++...+.       +.    .|.++
T Consensus        16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~   94 (255)
T cd03236          16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ   94 (255)
T ss_pred             hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence            445666 4788999999999999999999999987     3221           2221110       00    00000


Q ss_pred             ----------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        118 ----------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       118 ----------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                                            ......+++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++..
T Consensus        95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~  174 (255)
T cd03236          95 YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ  174 (255)
T ss_pred             hhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence                                  0112233444443211       12356677788888888887  5678889999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ...+.+.+++.......+++.+|.+.+.  ..+||++++++-
T Consensus       175 ~~~l~~~l~~l~~~~~tIIiiSHd~~~~--~~~ad~i~~l~~  214 (255)
T cd03236         175 RLNAARLIRELAEDDNYVLVVEHDLAVL--DYLSDYIHCLYG  214 (255)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEECC
Confidence            9999888887753356777789998664  468999988853

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.18  E-value=2.8e-11  Score=102.05  Aligned_cols=153  Identities=15%  Similarity=0.117  Sum_probs=100.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcccc---------cccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGH---------RAYD  115 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~---------~~~~  115 (212)
                      +.+.+++|...+  ...++++++...+|++++|+|+||||||||+++|.++    |...++...+..         -.|.
T Consensus         5 ~~nls~~~~~~~--~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v   82 (275)
T cd03289           5 VKDLTAKYTEGG--NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI   82 (275)
T ss_pred             EEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence            455556653221  1367889999999999999999999999999999986    434444322210         0111


Q ss_pred             CCc--------------------hhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH--HH
Q psy17138        116 VGT--------------------RGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       116 ~~~--------------------~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      +..                    ......++.+|..-+                  -+.|+.+|..|+..+..+|+  ++
T Consensus        83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl  162 (275)
T cd03289          83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL  162 (275)
T ss_pred             CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            110                    011122222222100                  13356678888889999888  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++.....+.+.+.+.. ..+.+++-+|.+...   ..||++++++
T Consensus       163 DEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i---~~~dri~vl~  210 (275)
T cd03289         163 DEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAM---LECQRFLVIE  210 (275)
T ss_pred             ECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH---HhCCEEEEec
Confidence            78888999999999999998764 356777779998543   3499999885

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.18  E-value=4.1e-11  Score=108.93  Aligned_cols=141  Identities=11%  Similarity=0.121  Sum_probs=98.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-----------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-----------  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-----------  118 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...+++..+.         + -.|.++.           
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            46778899999999999999999999999999986     32333321110         0 0010000           


Q ss_pred             --------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        119 --------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       119 --------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                                                .....++..+|..  ..+      +.|+.+|..++..+..+|.  +++++.+.+
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L  426 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV  426 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence                                      0112334445542  111      2366778889999999988  668999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|.....+.+.+.+.......+++-+|.+.+.  ..+||+++++.
T Consensus       427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~--~~~~d~v~~l~  469 (501)
T PRK10762        427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEV--LGMSDRILVMH  469 (501)
T ss_pred             CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH--HhhCCEEEEEE
Confidence            99999999999988763355777779998764  47899999885

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=2.2e-11  Score=100.85  Aligned_cols=152  Identities=13%  Similarity=0.076  Sum_probs=102.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc--------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG--------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~--------~~  112 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-        ...++...+.        +.
T Consensus         5 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   80 (246)
T PRK14269          5 TTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN   80 (246)
T ss_pred             eeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence            4555565531    13567788999999999999999999999999999862        1222221110        00


Q ss_pred             -cccCCc-------------------------h----hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCC
Q psy17138        113 -AYDVGT-------------------------R----GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       113 -~~~~~~-------------------------~----~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~  151 (212)
                       .|.+..                         .    .....++.+|..     ..      -+.|+.+|..++..+..+
T Consensus        81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  160 (246)
T PRK14269         81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK  160 (246)
T ss_pred             EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence             010000                         0    112334444441     01      123566788888899999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||+++++.
T Consensus       161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~--~~~~d~i~~l~  215 (246)
T PRK14269        161 PKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQG--KRVADYTAFFH  215 (246)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHH--HhhCcEEEEEE
Confidence            88  56888999999999999999887654 56788889988764  47899999885

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.18  E-value=3.3e-11  Score=97.09  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cccc-------cCCc------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRAY-------DVGT------  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~~-------~~~~------  118 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...++...+.        +-.|       .+..      
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l   95 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL   95 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence            57788999999999999999999999999999986     43334332211        0000       0000      


Q ss_pred             ------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        119 ------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       119 ------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                                  ......++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++.....+.+.+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  175 (204)
T PRK13538         96 RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH  175 (204)
T ss_pred             HHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                        011233344443211       12356678888889999988  568899999999999999998876


Q ss_pred             cCCCcEEEEEeccccccccccccCeEEE
Q psy17138        178 SESHKVIVIEAAVLLSAKWQDQVHEIWV  205 (212)
Q Consensus       178 ~~~~~~vvie~~~l~e~~~~~~~d~v~~  205 (212)
                      ......+++.+|.+.+.  ..+-++++.
T Consensus       176 ~~~~~tiii~sh~~~~i--~~~~~~~~~  201 (204)
T PRK13538        176 AEQGGMVILTTHQDLPV--ASDKVRKLR  201 (204)
T ss_pred             HHCCCEEEEEecChhhh--ccCCceEEe
Confidence            53345777779987663  233345543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.18  E-value=8.6e-11  Score=92.69  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=101.1

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~  112 (212)
                      .++++++|.. |  ..+++++++..++|+++.|+|||||||||++|+|.+.     |-..++.-.+.           +.
T Consensus         4 f~~V~k~Y~~-g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           4 FENVSKAYPG-G--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             ehhhhhhcCC-C--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            4566677742 2  3588899999999999999999999999999999853     33333221110           00


Q ss_pred             c---c-----cCCch---------------------hHHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChHHH-
Q psy17138        113 A---Y-----DVGTR---------------------GNQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKDEM-  155 (212)
Q Consensus       113 ~---~-----~~~~~---------------------~~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~~~-  155 (212)
                      +   +     .+...                     .....++..|..-       .-+.|..+|..++..+-..|.++ 
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl  160 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL  160 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence            0   0     00001                     1223333333211       12467888999999999999844 


Q ss_pred             -HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        156 -NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       156 -~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                       ++++.-++|....++.+...+...-..+|++.+|...-.  .++-++++.+
T Consensus       161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv--~~~~~rvl~l  210 (223)
T COG2884         161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV--NRMRHRVLAL  210 (223)
T ss_pred             ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH--HhccCcEEEE
Confidence             678888999999999999888875567888889976421  2344555543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=3.1e-11  Score=100.68  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=101.6

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------  110 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-.          ..++...+.       
T Consensus        14 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         14 KVENLNLWYGE----KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             EEeeeEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            35555555531    135678889999999999999999999999999998621          122221110       


Q ss_pred             ---cc-cccCCc------hh---------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 ---HR-AYDVGT------RG---------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 ---~~-~~~~~~------~~---------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                         +. .|.+..      ..                     ...+++.+|..     ..      -+.|+.+|-.++..+
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  169 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL  169 (258)
T ss_pred             HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence               00 011110      00                     11233334321     01      123566788888889


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.++++.. ...+++.+|.+.+.  .++||+++++.
T Consensus       170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~--~~~~d~i~~l~  227 (258)
T PRK14268        170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQA--ARISDYTGFFL  227 (258)
T ss_pred             HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            89988  56888999999999999999987753 46778889998764  46899999885

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=3e-11  Score=101.52  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=101.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-A  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~  113 (212)
                      .+.+.+++|...  ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. .
T Consensus         9 ~~~nl~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~   86 (271)
T PRK13632          9 KVENVSFSYPNS--ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG   86 (271)
T ss_pred             EEEeEEEEcCCC--CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence            355555555311  12356778899999999999999999999999999987     33333321110        00 1


Q ss_pred             ccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        114 YDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       114 ~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      |.+.        ...                     ...+++.+|..-+       -+.|+.+|-.++..+..+|+  ++
T Consensus        87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL  166 (271)
T PRK13632         87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF  166 (271)
T ss_pred             EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1111        000                     1122233343211       12356678888889999988  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.+++...+.+.+.+.+.. .+...+++.+|.+.+.   .+||+++++.
T Consensus       167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~---~~~d~v~~l~  216 (271)
T PRK13632        167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA---ILADKVIVFS  216 (271)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH---hhCCEEEEEE
Confidence            88999999999999999998775 3346788879988664   3699998875

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.18  E-value=7e-11  Score=96.08  Aligned_cols=153  Identities=18%  Similarity=0.100  Sum_probs=99.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~  114 (212)
                      +.+.+++|...  ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        + -.|
T Consensus         5 ~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           5 FKNVSLRYRPN--LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEecCCC--CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            45555555321  12467888999999999999999999999999999986     43333322110        0 001


Q ss_pred             cCCc--------------------hhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH--H
Q psy17138        115 DVGT--------------------RGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       115 ~~~~--------------------~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      .+..                    .......+.++..                 . .-+.|+.+|-.++..+..+|+  +
T Consensus        83 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll  162 (221)
T cd03244          83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV  162 (221)
T ss_pred             ECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            1100                    0011111212210                 0 012356677888889999988  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++.....+.+.+++... ...+++.+|.+.+.   ..||+++++.
T Consensus       163 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~  211 (221)
T cd03244         163 LDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTI---IDSDRILVLD  211 (221)
T ss_pred             EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH---hhCCEEEEEE
Confidence            6888999999999999999987754 35778889988664   2489998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.18  E-value=3.4e-11  Score=96.46  Aligned_cols=121  Identities=18%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchH----hHHHHhc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRK----KLGAIVF  149 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~----~l~~~vf  149 (212)
                      +|||+|++||||||+++.|.++    ...+++.|...+.......      ....+. .+.....++..    .+..+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~l~~l~~   73 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEEL------EERKNN-NYDHPDAFDFDLLISHLQDLKN   73 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccH------HHhccC-CCCCCCcccHHHHHHHHHHHHC
Confidence            5899999999999999999875    3567777764332221110      011110 11111112211    2222222


Q ss_pred             CChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        150 SNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                      .++-..+..+...++.....+     . ..+..++++|++++.+ ..+.++||.+|+|++|.+
T Consensus        74 ~~~~~~p~~d~~~~~~~~~~~-----~-i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~  130 (198)
T cd02023          74 GKSVEIPVYDFKTHSRLKETV-----T-VYPADVIILEGILALYDKELRDLMDLKIFVDTDAD  130 (198)
T ss_pred             CCCEeccccccccCcccCCce-----e-cCCCCEEEEechhhccchhHHhhcCeEEEEECChh
Confidence            211111111111111111111     0 1456799999999986 467789999999999976

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.18  E-value=3.9e-11  Score=95.50  Aligned_cols=129  Identities=20%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc-cccCCc--------hh
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR-AYDVGT--------RG  120 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~-~~~~~~--------~~  120 (212)
                      .++++++...+|++++|+|+||||||||+++|.++     |...++...+.          +. .|.+..        ..
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv   86 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV   86 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence            56778899999999999999999999999999986     33333321110          00 011110        00


Q ss_pred             ---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        121 ---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       121 ---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                                           ....++.+|..-.       -+.|+.+|..++..+..+|+  +++++.+.+++...+.+
T Consensus        87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~  166 (190)
T TIGR01166        87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM  166 (190)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence                                 1122233333211       12356677788888888888  56888899999999999


Q ss_pred             HHHHHhhcCCCcEEEEEeccccc
Q psy17138        171 KEEIARLSESHKVIVIEAAVLLS  193 (212)
Q Consensus       171 ~~~i~~~~~~~~~vvie~~~l~e  193 (212)
                      .+.+.+.......+++.+|.+.+
T Consensus       167 ~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       167 LAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHcCCEEEEEeecccc
Confidence            98888775334577777887643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=6.2e-11  Score=94.12  Aligned_cols=152  Identities=19%  Similarity=0.143  Sum_probs=96.2

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------  109 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------  109 (212)
                      ++++++++...    ..+++++.+.++|.+.+++||||+|||||+.++++|     |...+++-.+              
T Consensus         4 i~nv~K~y~~~----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           4 IENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             ehhhhHhhCCE----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            55566666532    567888999999999999999999999999999986     4444443222              


Q ss_pred             -------------------ccccccCCc------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        110 -------------------GHRAYDVGT------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       110 -------------------~~~~~~~~~------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                                         ++-.|..+.      ...++.++.+...-+       -+.|+.+|..++..+-||-+  ++
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL  159 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL  159 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence                               111122221      112333333332211       14678889889855556665  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +++-+-++..-...+.+.++.+. +-.+.+++.-|....|.  .+.|.++-+
T Consensus       160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS--~YsD~IVAl  209 (252)
T COG4604         160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS--CYSDHIVAL  209 (252)
T ss_pred             cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH--hhhhheeee
Confidence            66656556555556666666655 44667777788887764  366777654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.17  E-value=1.9e-11  Score=124.69  Aligned_cols=157  Identities=11%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~  113 (212)
                      ..+++.+++|+.  ....+++++++...+|+++||+|+|||||||++|+|.++     |...+++..+..        --
T Consensus      1938 L~v~nLsK~Y~~--~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257      1938 LRLNELTKVYSG--TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred             EEEEEEEEEECC--CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence            345566666631  123478889999999999999999999999999999986     444444322210        00


Q ss_pred             ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      |.++.       .                     ....+++.+|..-.       -+.|+.+|..++..+..+|+  +++
T Consensus      2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257      2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred             EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            11110       0                     01122333443211       12456677788888999998  668


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|..++.+++.|.+.....+.+++.+|.+.++  ..+||+++++.
T Consensus      2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~--e~lcDrV~IL~ 2144 (2272)
T TIGR01257      2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC--EALCTRLAIMV 2144 (2272)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999999999999988754467889999999886  47999998875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.17  E-value=4.3e-11  Score=100.45  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=98.1

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccCC
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDVG  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~~  117 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.                  .+   .+.+.
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  105 (268)
T PRK10419         26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR  105 (268)
T ss_pred             eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence            357888999999999999999999999999999986     32233322110                  00   01000


Q ss_pred             ch----------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        118 TR----------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       118 ~~----------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                      ..                      ....++..+|..  ..      -+.|+.+|-.++..+..+|+  +++++.+.+++.
T Consensus       106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~  185 (268)
T PRK10419        106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV  185 (268)
T ss_pred             CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence            00                      112333444432  11      13466778889999999998  568899999999


Q ss_pred             HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.++++. .....+++.+|.+.+.  ..+||+++++.
T Consensus       186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i--~~~~d~i~~l~  226 (268)
T PRK10419        186 LQAGVIRLLKKLQQQFGTACLFITHDLRLV--ERFCQRVMVMD  226 (268)
T ss_pred             HHHHHHHHHHHHHHHcCcEEEEEECCHHHH--HHhCCEEEEEE
Confidence            9999988888765 3356778879998764  46899999885

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.17  E-value=2.3e-11  Score=109.99  Aligned_cols=157  Identities=17%  Similarity=0.150  Sum_probs=103.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc--cccc-cccC---
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ--LGHR-AYDV---  116 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~--i~~~-~~~~---  116 (212)
                      .+++..+++.. +.....++++++...+|.++||+|+||||||||+++|+++     |...++...  +... .+.+   
T Consensus        23 ~lknL~~~~~~-~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lT  101 (549)
T PRK13545         23 KLKDLFFRSKD-GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT  101 (549)
T ss_pred             EEEEEEEecCC-CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCc
Confidence            35555444432 1122357888999999999999999999999999999987     322332211  0000 0000   


Q ss_pred             ------------C--ch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        117 ------------G--TR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       117 ------------~--~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                  +  ..    ....+++.+|....       -+.|+.+|..|+..+..+|+  +++++.+.++|...+.
T Consensus       102 V~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~  181 (549)
T PRK13545        102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKK  181 (549)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence                        0  00    01123334443211       13467778889988999998  5688899999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       182 LlelL~el~~~G~TIIIVSHdl~~i--~~l~DrIivL~  217 (549)
T PRK13545        182 CLDKMNEFKEQGKTIFFISHSLSQV--KSFCTKALWLH  217 (549)
T ss_pred             HHHHHHHHHhCCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            9998887653456788889998653  57899998875

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=3.3e-11  Score=100.49  Aligned_cols=153  Identities=18%  Similarity=0.131  Sum_probs=100.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------  110 (212)
                      .+++.+++|..    ...++++++...+|++++|+|+||||||||+++|+++.          ...++...+.       
T Consensus        14 ~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~   89 (259)
T PRK14274         14 QINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV   89 (259)
T ss_pred             EEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence            45566665531    13567788899999999999999999999999999752          2222221110       


Q ss_pred             ---cc-cccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138        111 ---HR-AYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~~-~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~  147 (212)
                         .. .|.+..      ..                      ....++.+|..     .+      -+.|+.+|..|+..
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara  169 (259)
T PRK14274         90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA  169 (259)
T ss_pred             HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence               00 011100      00                      01112233321     01      12356678888888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||++++++
T Consensus       170 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~  228 (259)
T PRK14274        170 LATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQA--ARVSDQTAFFY  228 (259)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence            999988  56889999999999999999988754 46778889988653  47899999885

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=4.7e-11  Score=99.02  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=99.2

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++          |...++...+.        
T Consensus         7 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          7 AQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            4455555531    1357788999999999999999999999999999986          22233322211        


Q ss_pred             --c-ccccCC-------chhHHHH----------------------HHHhCC-----ccC------CCCCccchHhHHHH
Q psy17138        111 --H-RAYDVG-------TRGNQVV----------------------RELFGE-----DIA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 --~-~~~~~~-------~~~~~~~----------------------~~~~g~-----~~~------~~~~~~~r~~l~~~  147 (212)
                        + -.|.+.       ...++.+                      ...++.     ...      -+.|+.+|-.++..
T Consensus        83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14272         83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA  162 (252)
T ss_pred             hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence              0 001111       0111100                      111111     000      12355667788888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.++|+  +++++.+.+++.....+.+.+++... ...+++.+|.+.+.  .++||+++++.
T Consensus       163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~  221 (252)
T PRK14272        163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQA--ARVSDTTSFFL  221 (252)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence            889988  56888999999999999999887754 46788889988764  46899999885

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=6.1e-11  Score=98.42  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcccc-----------ccccCC------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLGH-----------RAYDVG------  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~~-----------~~~~~~------  117 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++          |...++...+..           -.|.+.      
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14270         19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP   98 (251)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence            56778899999999999999999999999999986          333333222110           001110      


Q ss_pred             chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        118 TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       118 ~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                      ...                      .....+.+|..     ..      -+.|+.+|-.++..+..+|+  +++++.+.+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L  178 (251)
T PRK14270         99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSAL  178 (251)
T ss_pred             CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            000                      01122333320     00      12345567788888888887  568888999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.....+.+.+++...+ ..+++.+|.+.+.  ..+||++++++
T Consensus       179 D~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~--~~~~d~v~~l~  220 (251)
T PRK14270        179 DPISTLKIEDLMVELKKE-YTIVIVTHNMQQA--SRVSDYTAFFL  220 (251)
T ss_pred             CHHHHHHHHHHHHHHHhC-CeEEEEEcCHHHH--HHhcCEEEEEE
Confidence            999999999998877543 5777778988653  57899999885

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.16  E-value=2.6e-11  Score=110.72  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-----------  109 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-----------  109 (212)
                      .-.+++++++|..  .....++++++..++|..++|+|+||||||||+++|.++     |...++...+           
T Consensus       320 ~i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~  397 (529)
T TIGR02857       320 SLEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ  397 (529)
T ss_pred             eEEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence            3456666666642  222357888999999999999999999999999999986     3333433221           


Q ss_pred             ----ccccccCC---------------chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCCh
Q psy17138        110 ----GHRAYDVG---------------TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       110 ----~~~~~~~~---------------~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~  152 (212)
                          .++.+...               .......++..+.           +.       .-+.|+.+|-.+++.+..+|
T Consensus       398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~  477 (529)
T TIGR02857       398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA  477 (529)
T ss_pred             eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence                11111000               0111111111111           00       01346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +  +++++++.+++...+.+.+.+.+.. ..+++++-+|-+..   ...||+++++
T Consensus       478 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~---~~~~d~i~~l  529 (529)
T TIGR02857       478 PLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL---AERADRIVVL  529 (529)
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH---HHhCCEEEeC
Confidence            8  6688999999999999998888764 45677777998744   3579998763

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.16  E-value=2.5e-11  Score=102.81  Aligned_cols=126  Identities=21%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHHHHHHhCCc-cCCCCCccchHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQVVRELFGED-IALPDGSIDRKK  143 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~r~~  143 (212)
                      ...+++|||.|+|||||||++++|.++-        +.++..|.     |....    ......|.. .......++...
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~-----f~~~~----~~l~~~g~~~~~g~P~s~D~~~  129 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG-----FLHPN----QVLKERNLMKKKGFPESYDMHR  129 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc-----ccccH----HHHHHcCCccccCCChhccHHH
Confidence            4568999999999999999999997641        22344443     21111    111112210 000112334333


Q ss_pred             HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh-c--CCCcEEEEEecccccc-c----------cccccCeEEEEEe
Q psy17138        144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL-S--ESHKVIVIEAAVLLSA-K----------WQDQVHEIWVTFI  208 (212)
Q Consensus       144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~-~--~~~~~vvie~~~l~e~-~----------~~~~~d~v~~v~~  208 (212)
                      +...+    ..+..-. .+..|.+.+...++.... .  .+.+++++||.+++.. .          .+++||..|+|++
T Consensus       130 l~~~L----~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa  205 (290)
T TIGR00554       130 LVKFL----SDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA  205 (290)
T ss_pred             HHHHH----HHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEEC
Confidence            32111    1111111 255677777665554322 1  4678999999987742 2          2579999999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      |++
T Consensus       206 ~~d  208 (290)
T TIGR00554       206 EED  208 (290)
T ss_pred             CHH
Confidence            975

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=4.6e-11  Score=99.74  Aligned_cols=155  Identities=17%  Similarity=0.085  Sum_probs=103.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----------CCeeeeCCccc-----
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----------GAGLINCDQLG-----  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----------g~~vi~~D~i~-----  110 (212)
                      ..+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++           |..+++...+.     
T Consensus        11 i~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246         11 FNISRLYLYIND----KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             eeeeeEEEecCC----ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            456777777742    1357888999999999999999999999999999986           21112111110     


Q ss_pred             ---ccc-c-------cCCchh----------------------HHHHHHHhCCc-----cCC------CCCccchHhHHH
Q psy17138        111 ---HRA-Y-------DVGTRG----------------------NQVVRELFGED-----IAL------PDGSIDRKKLGA  146 (212)
Q Consensus       111 ---~~~-~-------~~~~~~----------------------~~~~~~~~g~~-----~~~------~~~~~~r~~l~~  146 (212)
                         ..+ |       .++...                      .....+.+|..     ..+      +.|+.+|-.|++
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  166 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR  166 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence               000 0       011000                      11222334431     111      224566778888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .+..+|+  +++++.+.+++...+.+.+.+.+... ...+++.+|.+...  ..+||++++++-
T Consensus       167 al~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~--~~~~d~v~~l~~  227 (257)
T PRK14246        167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQV--ARVADYVAFLYN  227 (257)
T ss_pred             HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHH--HHhCCEEEEEEC
Confidence            9999988  56888999999999999999987753 36788889998654  468999998863

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.16  E-value=4.8e-11  Score=95.62  Aligned_cols=137  Identities=15%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~----  119 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++...+.       + -.|.+.       ..    
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (198)
T TIGR01189        14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN   93 (198)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence            356778899999999999999999999999999986     33333322110       0 001110       00    


Q ss_pred             -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                                   .....++.+|..-+       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+.+.
T Consensus        94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  173 (198)
T TIGR01189        94 LHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH  173 (198)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                         11222333333211       02356667788888888888  568889999999999999999876


Q ss_pred             cCCCcEEEEEeccccccccccccCeEE
Q psy17138        178 SESHKVIVIEAAVLLSAKWQDQVHEIW  204 (212)
Q Consensus       178 ~~~~~~vvie~~~l~e~~~~~~~d~v~  204 (212)
                      ......+++.+|...+.    .|++++
T Consensus       174 ~~~~~tii~~sH~~~~~----~~~~~~  196 (198)
T TIGR01189       174 LARGGIVLLTTHQDLGL----VEAREL  196 (198)
T ss_pred             HhCCCEEEEEEcccccc----cceEEe
Confidence            43345777778877543    567665

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=6.1e-11  Score=98.57  Aligned_cols=153  Identities=16%  Similarity=0.112  Sum_probs=100.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------  110 (212)
                      .+.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++-          ...++...+.       
T Consensus         9 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (254)
T PRK14273          9 ETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL   84 (254)
T ss_pred             EEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence            35555555531    13568889999999999999999999999999999752          2223221110       


Q ss_pred             ---cc-cccCC------chhH----------------------HHHHHHhCC-----ccC------CCCCccchHhHHHH
Q psy17138        111 ---HR-AYDVG------TRGN----------------------QVVRELFGE-----DIA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~~-~~~~~------~~~~----------------------~~~~~~~g~-----~~~------~~~~~~~r~~l~~~  147 (212)
                         .. .|.++      ....                      ....+.+|.     ...      -+.|+.+|-.++..
T Consensus        85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara  164 (254)
T PRK14273         85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART  164 (254)
T ss_pred             HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence               00 01110      0000                      111122221     000      12356678888989


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.+.+... ...+++-+|.+.+.  ..+||+++++.
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~--~~~~d~i~~l~  223 (254)
T PRK14273        165 LAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQA--GRISDRTAFFL  223 (254)
T ss_pred             HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999998  56889999999999999999988753 46777789988764  46899998874

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.16  E-value=6.5e-11  Score=98.88  Aligned_cols=142  Identities=13%  Similarity=0.045  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc-------------c-ccccCC----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG-------------H-RAYDVG----  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~-------------~-~~~~~~----  117 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++-        ...++...+.             + -.|.+.    
T Consensus        18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (262)
T PRK09984         18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL   97 (262)
T ss_pred             EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence            3567788999999999999999999999999999862        1222221110             0 011111    


Q ss_pred             ---chh-----------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        118 ---TRG-----------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       118 ---~~~-----------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                         ...                             ....++.+|..-.       -+.|+.+|..++..+..+|+  +++
T Consensus        98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (262)
T PRK09984         98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD  177 (262)
T ss_pred             ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence               000                             1122233333211       13356678888888999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+++...+.+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       178 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~--~~~~d~i~~l~  227 (262)
T PRK09984        178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA--LRYCERIVALR  227 (262)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            8999999999999999998875 3356788889998763  46899998875

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.16  E-value=8.9e-11  Score=94.64  Aligned_cols=155  Identities=15%  Similarity=0.054  Sum_probs=100.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-  112 (212)
                      ..+.+..++|...  ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. 
T Consensus         7 l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           7 IEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             EEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            4466666666421  12467788999999999999999999999999999986     33334322110        00 


Q ss_pred             cccCC------chhH-----------HHHHHHhCC--cc-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138        113 AYDVG------TRGN-----------QVVRELFGE--DI-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV  170 (212)
Q Consensus       113 ~~~~~------~~~~-----------~~~~~~~g~--~~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~  170 (212)
                      .|.+.      ....           ..+...+..  .. .-+.|+.+|-.++..+..+|+  +++++.+.+++...+.+
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l  164 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI  164 (207)
T ss_pred             EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence            01110      0111           111111111  00 012356677888888888888  56788889999999999


Q ss_pred             HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+... ...+++-+|.+.+.  . .||+++++.
T Consensus       165 ~~~l~~~~~-~~tiii~th~~~~~--~-~~d~v~~l~  197 (207)
T cd03369         165 QKTIREEFT-NSTILTIAHRLRTI--I-DYDKILVMD  197 (207)
T ss_pred             HHHHHHhcC-CCEEEEEeCCHHHH--h-hCCEEEEEE
Confidence            999887643 56777779988764  2 489998875

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.16  E-value=2.5e-11  Score=111.98  Aligned_cols=156  Identities=16%  Similarity=0.149  Sum_probs=104.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      -.+++.+++|...  ....++++++..++|.+++|+|+||||||||+++|.++     |...++.-.+.           
T Consensus       339 i~~~~v~f~y~~~--~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        339 LTLNNVSFTYPDQ--PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             EEEEEEEEECCCC--CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            5566777766421  12357889999999999999999999999999999986     44444432211           


Q ss_pred             ----cccc-------------cCC--chhHHHHHHHhCCcc-------C----------CCCCccchHhHHHHhcCChH-
Q psy17138        111 ----HRAY-------------DVG--TRGNQVVRELFGEDI-------A----------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ----~~~~-------------~~~--~~~~~~~~~~~g~~~-------~----------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                          ++.+             .+.  .......++..|..-       +          -+.|+.+|-.+++.+.++|+ 
T Consensus       417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i  496 (574)
T PRK11160        417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL  496 (574)
T ss_pred             eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence                1110             010  011122222222110       0          13467788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                       +++++.+.+++...+.+.+.+.+.. ..+++++-+|-+...   ..||++++++-
T Consensus       497 lilDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~---~~~d~i~~l~~  548 (574)
T PRK11160        497 LLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGL---EQFDRICVMDN  548 (574)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHH---HhCCEEEEEeC
Confidence             5588999999999999998887764 356777779987543   46999998863

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.16  E-value=1.6e-11  Score=115.92  Aligned_cols=153  Identities=21%  Similarity=0.165  Sum_probs=102.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++++++|...  .-..++++++..++|+.++|+|+||||||||+++|.++     |...++.-.+.           
T Consensus       478 I~~~~vsf~y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       478 VELRNITFGYSPL--EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             EEEEEEEEecCCC--CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence            4567777777522  22467889999999999999999999999999999987     44444432210           


Q ss_pred             ----ccc----------c---cCC--chhHHHHHH---------Hh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRA----------Y---DVG--TRGNQVVRE---------LF--GEDI-A------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~----------~---~~~--~~~~~~~~~---------~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.          .   .+.  .....+.++         .+  |.+. .      -+.|+.+|-.+++.+.++|+
T Consensus       556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence                111          0   000  011111111         11  1110 0      13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+-+++...+.+.+.+.+   ..+++++-+|-+..   ...||++++++
T Consensus       636 iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~---i~~~D~Iivl~  685 (710)
T TIGR03796       636 ILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST---IRDCDEIIVLE  685 (710)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH---HHhCCEEEEEe
Confidence              66888999999999999888875   24667776888744   35699999886

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.16  E-value=8.8e-11  Score=105.21  Aligned_cols=153  Identities=19%  Similarity=0.155  Sum_probs=101.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++.+++|.    -.++++++++...+|++.+|+|.||||||||+|+|++.     |...+++..+.           
T Consensus         9 l~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           9 LELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             eeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            45888899997    44899999999999999999999999999999999975     44444443321           


Q ss_pred             -----------------------cccccC-C----c---hhHHHHHHHhCCccCCCC--------CccchHhHHHHhcCC
Q psy17138        111 -----------------------HRAYDV-G----T---RGNQVVRELFGEDIALPD--------GSIDRKKLGAIVFSN  151 (212)
Q Consensus       111 -----------------------~~~~~~-~----~---~~~~~~~~~~g~~~~~~~--------~~~~r~~l~~~vf~~  151 (212)
                                             ++...+ +    .   .....++...|.... .+        ++.+.-.++..+..+
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~  163 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFD  163 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence                                   110000 0    0   012233333343210 11        123334556666666


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.  .++++++-+.+.-.+.+.+.+++++ .+..++++ +|-|.|.  .++||++.++.
T Consensus       164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I-SHrl~Ei--~~i~DritVlR  219 (500)
T COG1129         164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI-SHRLDEV--FEIADRITVLR  219 (500)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-cCcHHHH--HHhcCEEEEEe
Confidence            65  4577777788888888888888888 55556666 9998774  68999998763

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.15  E-value=2.7e-11  Score=107.46  Aligned_cols=148  Identities=20%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             hhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------cc-ccccCCc----
Q psy17138         57 RELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GH-RAYDVGT----  118 (212)
Q Consensus        57 ~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~-~~~~~~~----  118 (212)
                      ..+|.....+++++|....|..+||+||||||||||+|+|.+.     |...+|+-.+        ++ --|.|+.    
T Consensus       343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF  422 (580)
T COG4618         343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF  422 (580)
T ss_pred             cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence            4456565667889999999999999999999999999999974     5555553222        11 1244432    


Q ss_pred             -hhHHHHHHHhCCcc------------------------C----------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        119 -RGNQVVRELFGEDI------------------------A----------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       119 -~~~~~~~~~~g~~~------------------------~----------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                       ....+-+..|+.+.                        +          -+.|+.+|-.|++.+|.||.  .++++++-
T Consensus       423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN  502 (580)
T COG4618         423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN  502 (580)
T ss_pred             CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence             11222222333211                        0          13467889999999999998  56889999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..-...+.+-|.+.+....++++-+|=.-   ....+|++.++.
T Consensus       503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs---~L~~~Dkilvl~  545 (580)
T COG4618         503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS---ALASVDKILVLQ  545 (580)
T ss_pred             cchhHHHHHHHHHHHHHHcCCEEEEEecCHH---HHhhcceeeeec
Confidence            9988888888888877744445555577532   235678887653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.15  E-value=3.3e-11  Score=99.16  Aligned_cols=141  Identities=14%  Similarity=0.130  Sum_probs=97.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------------ccc-ccCCch------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------------HRA-YDVGTR------  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------------~~~-~~~~~~------  119 (212)
                      .++++++...+|++++|+|+||||||||+++|+++     |...++...+.             ++. +.+...      
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~   93 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA   93 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence            57778899999999999999999999999999986     43334322110             000 000000      


Q ss_pred             ---------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHH
Q psy17138        120 ---------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIA  175 (212)
Q Consensus       120 ---------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~  175 (212)
                                     .....++.+|..-.       -+.|+.+|..|+..+..+|+  +++++.+.+++...+.+.+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~  173 (235)
T cd03299          94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK  173 (235)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence                           01122333443211       13466778889999999988  5688899999999999999988


Q ss_pred             hhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        176 RLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       176 ~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.. .....+++.+|.+.+.  .++||+++++.
T Consensus       174 ~~~~~~~~tili~tH~~~~~--~~~~d~i~~l~  204 (235)
T cd03299         174 KIRKEFGVTVLHVTHDFEEA--WALADKVAIML  204 (235)
T ss_pred             HHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            765 3256788889988763  46899998875

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.15  E-value=1.1e-10  Score=101.42  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc------------------cccccCC--
Q psy17138         62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG------------------HRAYDVG--  117 (212)
Q Consensus        62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~------------------~~~~~~~--  117 (212)
                      .+++++++++..++|+.+||+|.|||||||+..+|.+|    |...|++..+.                  .+.|..-  
T Consensus       299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence            34678889999999999999999999999999999986    55556544431                  1111000  


Q ss_pred             ---------------------chh---HHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        118 ---------------------TRG---NQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       118 ---------------------~~~---~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                                           ...   .....+..|.+--        -+.|+.+|-.++..+.-.|.  +++++++.++
T Consensus       379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD  458 (534)
T COG4172         379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD  458 (534)
T ss_pred             ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence                                 000   1111122232210        14678889899988888887  5688899999


Q ss_pred             HHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+...+-+.+++++  .+-.+.|| +|.|.-  .+.+||+|+++.
T Consensus       459 ~SVQaQvv~LLr~LQ~k~~LsYLFI-SHDL~V--vrAl~~~viVm~  501 (534)
T COG4172         459 RSVQAQVLDLLRDLQQKHGLSYLFI-SHDLAV--VRALCHRVIVMR  501 (534)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEE-eccHHH--HHHhhceEEEEe
Confidence            999999999988887  44568888 888854  467999999874

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.15  E-value=2.1e-11  Score=112.55  Aligned_cols=156  Identities=16%  Similarity=0.189  Sum_probs=103.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++.++++...  .-..++++++..++|..++|+|+||||||||+++|.++     |...++...+            
T Consensus       342 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  419 (582)
T PRK11176        342 IEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV  419 (582)
T ss_pred             EEEEEEEEecCCC--CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence            5566666666321  22356788999999999999999999999999999987     4334433221            


Q ss_pred             ---cccc------------cc-CC---chhHHHHHHHhC---------Ccc---C------CCCCccchHhHHHHhcCCh
Q psy17138        110 ---GHRA------------YD-VG---TRGNQVVRELFG---------EDI---A------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       110 ---~~~~------------~~-~~---~~~~~~~~~~~g---------~~~---~------~~~~~~~r~~l~~~vf~~~  152 (212)
                         .++.            +. +.   ........+..|         ...   .      -+.|+.+|-.+++.+..+|
T Consensus       420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~  499 (582)
T PRK11176        420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_pred             eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence               1111            10 10   011111111111         111   0      1346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +  +++++++.+++.....+.+.+.+.. ..+++++-+|-+..   ...||++++++-
T Consensus       500 ~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~---~~~~D~Ii~l~~  553 (582)
T PRK11176        500 PILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST---IEKADEILVVED  553 (582)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH---HHhCCEEEEEEC
Confidence            8  5688999999999999998887764 34677777898743   467999998863

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=6.5e-11  Score=98.07  Aligned_cols=152  Identities=14%  Similarity=0.111  Sum_probs=99.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.        
T Consensus         6 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          6 IENLDLFYGE----NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             EeccEEEECC----eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            4455555531    236788899999999999999999999999999997622          122221110        


Q ss_pred             -c-ccccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138        111 -H-RAYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIVF  149 (212)
Q Consensus       111 -~-~~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf  149 (212)
                       + -.|.+..      ...                      ....+.+|..     ..      -+.|+.+|..|+..+.
T Consensus        82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253         82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence             0 0011100      000                      0111222210     00      1235666778888899


Q ss_pred             CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|+  +++++.+.+++.....+.+.+.++..+ ..+++.+|.+.+  +..+||+++++.
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~--~~~~~d~i~~l~  218 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQ--ARRISDRTAFFL  218 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEecCHHH--HHHhCCEEEEEE
Confidence            9888  568888999999999999999887543 677777998865  357899999875

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.15  E-value=4.4e-11  Score=108.62  Aligned_cols=153  Identities=12%  Similarity=0.005  Sum_probs=103.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc---------c-
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG---------H-  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~---------~-  111 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-.       ..++...+.         + 
T Consensus         4 i~~l~~~~~~----~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         4 MKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             EEeEEEEeCC----eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            4555555531    236788899999999999999999999999999998632       122221110         0 


Q ss_pred             ccccCCc--------------------------------hhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCC
Q psy17138        112 RAYDVGT--------------------------------RGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       112 ~~~~~~~--------------------------------~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~  151 (212)
                      -.|.+..                                .....+++.+|....        -+.|+.+|..++..+..+
T Consensus        80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~  159 (500)
T TIGR02633        80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ  159 (500)
T ss_pred             EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence            0010000                                011233444554211        123567788899899999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++.+.++|.....+.+.++++......+++-+|.+.+.  ..+||+++++.
T Consensus       160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~--~~~~d~i~~l~  215 (500)
T TIGR02633       160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV--KAVCDTICVIR  215 (500)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH--HHhCCEEEEEe
Confidence            98  56899999999999999999988764455777779998764  47899999885

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.15  E-value=9e-11  Score=95.31  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=86.0

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-eeCCcc--cccc-ccCCchhHH--------------
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-INCDQL--GHRA-YDVGTRGNQ--------------  122 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-i~~D~i--~~~~-~~~~~~~~~--------------  122 (212)
                      ++++++...+|.+++|+|+||||||||+++|+++     |... ++...+  .... +.+.-...+              
T Consensus         3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~   82 (213)
T PRK15177          3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD   82 (213)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence            5678889999999999999999999999999986     3332 333221  1111 111101000              


Q ss_pred             ----HHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEec
Q psy17138        123 ----VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAA  189 (212)
Q Consensus       123 ----~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~  189 (212)
                          .+...++.+..       -+.|+.+|-.++..+..+|+  +++++.+-+++.....+.+.+.+...+ ..+++.+|
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~-~~ii~vsH  161 (213)
T PRK15177         83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ-KGLIVLTH  161 (213)
T ss_pred             HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC-CcEEEEEC
Confidence                01111111100       12355667778888888887  456666667888888888776432222 34667799


Q ss_pred             cccccccccccCeEEEEE
Q psy17138        190 VLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       190 ~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.  ..+||+++++.
T Consensus       162 ~~~~~--~~~~d~i~~l~  177 (213)
T PRK15177        162 NPRLI--KEHCHAFGVLL  177 (213)
T ss_pred             CHHHH--HHhcCeeEEEE
Confidence            98763  46899998875

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=6.3e-11  Score=110.61  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=101.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-c---cccc------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-L---GHRA------  113 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-i---~~~~------  113 (212)
                      +.+.+++|+.    ...++++++...+|.++||+|+||||||||+++|+++     |...++... +   ....      
T Consensus         4 i~nls~~~g~----~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~   79 (638)
T PRK10636          4 FSSLQIRRGV----RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP   79 (638)
T ss_pred             EEEEEEEeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence            4555666642    2467889999999999999999999999999999986     322232211 0   0000      


Q ss_pred             ---ccCC---------------------------------------chhHHHHHHHhCCc--cCC------CCCccchHh
Q psy17138        114 ---YDVG---------------------------------------TRGNQVVRELFGED--IAL------PDGSIDRKK  143 (212)
Q Consensus       114 ---~~~~---------------------------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~  143 (212)
                         |...                                       ......++..+|..  ..+      +.|+..|..
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence               0000                                       00111223334432  111      245677889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+..+..+|+  +++++.+.+++.....+.+.+.+.  + ..+++-+|.....  ..+||+++.++
T Consensus       160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~-~tviivsHd~~~l--~~~~d~i~~L~  220 (638)
T PRK10636        160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--Q-GTLILISHDRDFL--DPIVDKIIHIE  220 (638)
T ss_pred             HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--C-CeEEEEeCCHHHH--HHhcCEEEEEe
Confidence            9999999998  678999999999999999888764  2 3666679998764  57899999885

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=5.2e-11  Score=98.96  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc----------c-ccccCCc----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG----------H-RAYDVGT----  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~----------~-~~~~~~~----  118 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++          |...++...+.          + -.|.+..    
T Consensus        20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   99 (253)
T PRK14261         20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF   99 (253)
T ss_pred             eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence            367788899999999999999999999999999975          22222221110          0 0010000    


Q ss_pred             --h------------------h----HHHHHHHhCCc--c---C------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        119 --R------------------G----NQVVRELFGED--I---A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       119 --~------------------~----~~~~~~~~g~~--~---~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                        .                  .    .....+.++..  +   .      -+.|+.+|..++..+..+|+  +++++.+.
T Consensus       100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g  179 (253)
T PRK14261        100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA  179 (253)
T ss_pred             cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence              0                  0    01111222210  0   0      13356677888889999988  56888999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++...+.+.+.+.++..+ ..+++.+|.+.+.  ..+||+++++.
T Consensus       180 LD~~~~~~l~~~l~~~~~~-~tvii~sh~~~~~--~~~~d~v~~l~  222 (253)
T PRK14261        180 LDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQA--ARVSDYTGFMY  222 (253)
T ss_pred             CCHHHHHHHHHHHHHHhhC-ceEEEEEcCHHHH--HhhCCEEEEEE
Confidence            9999999999999877543 6777779988663  46899998875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=1e-10  Score=97.71  Aligned_cols=154  Identities=12%  Similarity=0.061  Sum_probs=102.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------  110 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++.          ...++...+.      
T Consensus        14 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         14 IQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             EEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            345666666632    13577889999999999999999999999999999762          1222221110      


Q ss_pred             ----c-ccccCCc------h----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        111 ----H-RAYDVGT------R----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ----~-~~~~~~~------~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                          + -.|.+..      .                      .....++.++..     ..      -+.|+.+|-.++.
T Consensus        90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  169 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR  169 (260)
T ss_pred             HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence                0 0010100      0                      011223334321     01      1235677888888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++...+.+.+.+++... ...+++-+|.+.+.  ..+||++++++
T Consensus       170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~  229 (260)
T PRK10744        170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQA--ARCSDYTAFMY  229 (260)
T ss_pred             HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence            8989988  56889999999999999999988753 35777779988653  46899998885

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.3e-10  Score=104.69  Aligned_cols=151  Identities=18%  Similarity=0.182  Sum_probs=101.1

Q ss_pred             chhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC---Ccc------------c
Q psy17138         51 SSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC---DQL------------G  110 (212)
Q Consensus        51 s~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~---D~i------------~  110 (212)
                      ...++++. | . +.+.+.++..+.|..++|+|+|||||||+++.|.|+     |-..++.   +.+            +
T Consensus       325 ~l~~~y~~-g-~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~  401 (559)
T COG4988         325 NLSFRYPD-G-K-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS  401 (559)
T ss_pred             ceEEecCC-C-C-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence            55555532 2 2 677888899999999999999999999999999987     2233331   111            1


Q ss_pred             cccccCCchh---------------HHHHH------HHh----CCcc-C------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        111 HRAYDVGTRG---------------NQVVR------ELF----GEDI-A------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       111 ~~~~~~~~~~---------------~~~~~------~~~----g~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      +..|......               ..+.+      +..    |.+. +      -+.|+.+|-.+++.+..+++  +++
T Consensus       402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD  481 (559)
T COG4988         402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD  481 (559)
T ss_pred             CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence            2222111110               11111      111    1111 0      02367789999998888876  678


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ++++-++.+..+.+.+.+.++.+ .+++++-+|-+...   .-+|++|+++.
T Consensus       482 EpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~---~~~D~I~vld~  529 (559)
T COG4988         482 EPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDA---ADADRIVVLDN  529 (559)
T ss_pred             CCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHH---hcCCEEEEecC
Confidence            99999999999999999888753 47788879988654   57999999873

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.14  E-value=1.9e-11  Score=115.16  Aligned_cols=155  Identities=16%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++++++|..  .....++++++..++|..++|+|+||||||||+++|.++     |...++...+.           
T Consensus       464 I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i  541 (694)
T TIGR03375       464 IEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI  541 (694)
T ss_pred             EEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence            456677777632  122357889999999999999999999999999999986     44445432221           


Q ss_pred             ----cccc-------------cCC--chhHHHH---------HHHhCC--cc-C------CCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRAY-------------DVG--TRGNQVV---------RELFGE--DI-A------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~~-------------~~~--~~~~~~~---------~~~~g~--~~-~------~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.+             .+.  .......         +..+..  +. .      -+.|+.+|-.+++.+.++|+
T Consensus       542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~  621 (694)
T TIGR03375       542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP  621 (694)
T ss_pred             EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence                1100             000  0011111         111111  10 0      13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        .++++++.+++...+.+.+.+.+... .+++++-+|-+..   ...||++++++
T Consensus       622 iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~---~~~~D~iivl~  673 (694)
T TIGR03375       622 ILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL---LDLVDRIIVMD  673 (694)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH---HHhCCEEEEEe
Confidence              56888999999999999988877643 4566666888743   36799999885

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=5.8e-11  Score=100.11  Aligned_cols=155  Identities=14%  Similarity=0.089  Sum_probs=101.1

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~  114 (212)
                      +++.+++|... .....++++++...+|++++|+|+||||||||+++|+++     |...+++..+.        +. .|
T Consensus         7 ~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (277)
T PRK13642          7 VENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM   85 (277)
T ss_pred             EEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEE
Confidence            55556665321 112357888999999999999999999999999999986     33333321110        00 01


Q ss_pred             cCC--------chhH---------------------HHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        115 DVG--------TRGN---------------------QVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       115 ~~~--------~~~~---------------------~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      .+.        ....                     ....+.+|..-+       -+.|+.+|..++..+..+|+  +++
T Consensus        86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD  165 (277)
T PRK13642         86 VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD  165 (277)
T ss_pred             EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            000        0000                     112222222111       12355677788889999988  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+++...+.+.+.+.++. .....+++.+|.+.+.   ..||+++++.
T Consensus       166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~---~~~d~i~~l~  214 (277)
T PRK13642        166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA---ASSDRILVMK  214 (277)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            8899999999999999988775 3256777779998875   2599999886

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.14  E-value=1.3e-10  Score=93.43  Aligned_cols=156  Identities=16%  Similarity=0.102  Sum_probs=96.4

Q ss_pred             eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Cc--c---c
Q psy17138         49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQ--L---G  110 (212)
Q Consensus        49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~--i---~  110 (212)
                      +++.+++|...+. ....++++++..++|.+++|+|+||||||||+++|+++     |...++.       +.  .   .
T Consensus         3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~   82 (204)
T cd03250           3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI   82 (204)
T ss_pred             EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence            4455555532110 01356788999999999999999999999999999986     3222221       10  0   0


Q ss_pred             -cccccC---CchhHHHHHHHhCC-----------c-------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        111 -HRAYDV---GTRGNQVVRELFGE-----------D-------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       111 -~~~~~~---~~~~~~~~~~~~g~-----------~-------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                       ..++..   .........+.++.           .       ..-+.|+.+|-.++..+.++|+  +++++.+.+++..
T Consensus        83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  162 (204)
T cd03250          83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV  162 (204)
T ss_pred             HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence             001100   00111111111110           0       0013466778889999999998  5688899999999


Q ss_pred             HHHHHHH-HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEE-IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~-i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+. +.........+++.+|.+...  .. ||+++++.
T Consensus       163 ~~~l~~~ll~~~~~~~~tvi~~sh~~~~~--~~-~d~i~~l~  201 (204)
T cd03250         163 GRHIFENCILGLLLNNKTRILVTHQLQLL--PH-ADQIVVLD  201 (204)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEeCCHHHH--hh-CCEEEEEe
Confidence            8888764 454433356777778887654  34 99998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=6.1e-11  Score=98.94  Aligned_cols=152  Identities=14%  Similarity=0.029  Sum_probs=99.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++          |...++...+.        
T Consensus        10 ~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (259)
T PRK14260         10 VKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR   85 (259)
T ss_pred             EEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence            4555555531    1356788899999999999999999999999999986          22222221110        


Q ss_pred             --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        . -.|.+.      ...                      ....++.+|..     ..      -+.|+.+|..++..+
T Consensus        86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  165 (259)
T PRK14260         86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL  165 (259)
T ss_pred             hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence              0 001000      000                      01112222320     11      123566778888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||+++++.
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i--~~~~d~i~~l~  223 (259)
T PRK14260        166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQA--TRVSDFTAFFS  223 (259)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCeEEEEe
Confidence            88888  56888999999999999999987754 36788889988764  47899999985

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.14  E-value=9.3e-11  Score=96.28  Aligned_cols=139  Identities=18%  Similarity=0.166  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCC------chh----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVG------TRG----  120 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~------~~~----  120 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++     |...++...+..         -.|.+.      ...    
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl   95 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI   95 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence            56778889999999999999999999999999987     433443322110         001110      000    


Q ss_pred             -----------HHH---------HHHHh--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        121 -----------NQV---------VRELF--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       121 -----------~~~---------~~~~~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                                 ...         ....+  |.+      . .-+.|+.+|-.++..+..+|+  +++++.+.+++.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~  175 (236)
T cd03253          96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE  175 (236)
T ss_pred             hhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence                       000         00111  100      0 012356667788888889988  5688999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+... ...+++.+|.+.+.   ..||+++++.
T Consensus       176 l~~~l~~~~~-~~tiii~sh~~~~~---~~~d~~~~l~  209 (236)
T cd03253         176 IQAALRDVSK-GRTTIVIAHRLSTI---VNADKIIVLK  209 (236)
T ss_pred             HHHHHHHhcC-CCEEEEEcCCHHHH---HhCCEEEEEE
Confidence            9999887755 56788889988765   2499999885

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=6.5e-11  Score=98.14  Aligned_cols=152  Identities=14%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++          |...++...+.        
T Consensus         6 ~~~l~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~   81 (250)
T PRK14262          6 IENFSAYYGE----KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE   81 (250)
T ss_pred             EEeeEEEeCC----ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence            4455555531    1356778899999999999999999999999999975          22233321110        


Q ss_pred             --c-ccccCC------chhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVG------TRGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~------~~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        + -.|.+.      ...++                      ...+.+|..     ..      -+.|+.+|..++..+
T Consensus        82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al  161 (250)
T PRK14262         82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL  161 (250)
T ss_pred             hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence              0 001110      01111                      111222211     00      123456677888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||++++++
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~--~~~~d~i~~l~  219 (250)
T PRK14262        162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQA--IRIADYIAFMY  219 (250)
T ss_pred             hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88887  56888899999999999999987754 46788889988653  46899998875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.14  E-value=6.1e-11  Score=108.23  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=102.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------Ceeee----------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLIN----------------  105 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~----------------  105 (212)
                      +++.+++|.  +  ...++++++...+|.+++|+|+||||||||+++|+++-       ...++                
T Consensus         3 ~~~l~~~~~--~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         3 VKNLTKKFD--G--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             EEEEEEEEC--C--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence            445555553  1  24678899999999999999999999999999999872       11232                


Q ss_pred             -------CCc------------------ccccc-c--c------CCchh---------------------HHHHHHHhCC
Q psy17138        106 -------CDQ------------------LGHRA-Y--D------VGTRG---------------------NQVVRELFGE  130 (212)
Q Consensus       106 -------~D~------------------i~~~~-~--~------~~~~~---------------------~~~~~~~~g~  130 (212)
                             ...                  +.+.+ |  +      +....                     ...+++.+|.
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                   000                  00000 1  0      00011                     1122333343


Q ss_pred             ccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccccccccccc
Q psy17138        131 DIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQV  200 (212)
Q Consensus       131 ~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~  200 (212)
                      ...       -+.|+.+|..++..+..+|+  +++++.+.++|...+.+.+.++++. .....|++-+|.+...  ..+|
T Consensus       159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~--~~~~  236 (520)
T TIGR03269       159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI--EDLS  236 (520)
T ss_pred             hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhc
Confidence            211       13467788899999999998  6789999999999999999888774 3356778889998764  4789


Q ss_pred             CeEEEEE
Q psy17138        201 HEIWVTF  207 (212)
Q Consensus       201 d~v~~v~  207 (212)
                      |+++++.
T Consensus       237 d~i~~l~  243 (520)
T TIGR03269       237 DKAIWLE  243 (520)
T ss_pred             CEEEEEe
Confidence            9999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=8.7e-11  Score=97.50  Aligned_cols=152  Identities=13%  Similarity=0.072  Sum_probs=98.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~--------  110 (212)
                      +.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++.          ...++...+.        
T Consensus         8 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14255          8 SSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ   83 (252)
T ss_pred             EEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence            4555555531    13567788999999999999999999999999999852          1222221110        


Q ss_pred             --c-ccccCCc------hhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVGT------RGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~~------~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        . -.|.+..      ..++                      ...+.++..     ..      -+.|+.+|..++..+
T Consensus        84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence              0 0011100      0000                      011112210     00      123566778888899


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+...+ ..+++-+|.+.+.  ..+||+++++.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~~~--~~~~d~i~~l~  221 (252)
T PRK14255        164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSMHQA--SRISDKTAFFL  221 (252)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-CEEEEEECCHHHH--HHhCCEEEEEE
Confidence            99988  668899999999999999998877543 5777778988653  56899998885

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.14  E-value=4.7e-11  Score=111.22  Aligned_cols=159  Identities=17%  Similarity=0.092  Sum_probs=107.5

Q ss_pred             cceechhhhhhhh-c------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----
Q psy17138         47 DKLSSSNLRMREL-G------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----  110 (212)
Q Consensus        47 ~~iss~~~r~~~~-g------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----  110 (212)
                      ..+++.++.|... +      .....++++++...+|+++||+|+||||||||+++|.++     |...++...+.    
T Consensus       314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~  393 (623)
T PRK10261        314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP  393 (623)
T ss_pred             EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH
Confidence            3566666666321 1      112467889999999999999999999999999999987     33344332110    


Q ss_pred             --------------ccc---ccCCch----------------------hHHHHHHHhCCc--cCC------CCCccchHh
Q psy17138        111 --------------HRA---YDVGTR----------------------GNQVVRELFGED--IAL------PDGSIDRKK  143 (212)
Q Consensus       111 --------------~~~---~~~~~~----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~  143 (212)
                                    .+.   +.+...                      ....+++.+|..  ..+      +.|+.+|-.
T Consensus       394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~  473 (623)
T PRK10261        394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC  473 (623)
T ss_pred             HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence                          010   000000                      111233445542  111      346778889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+..+..+|+  +++++.+.+++.....+.+.+.++. .....+++-+|.+...  ..+||++++++
T Consensus       474 iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v--~~~~dri~vl~  538 (623)
T PRK10261        474 IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV--ERISHRVAVMY  538 (623)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999999998  5688999999999999999998875 3345677779998764  57899999985

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=5.8e-11  Score=100.00  Aligned_cols=154  Identities=16%  Similarity=0.069  Sum_probs=102.6

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------  110 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++.          ...++...+.      
T Consensus        21 l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         21 FEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             EEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            446666666642    13678889999999999999999999999999999762          2223221110      


Q ss_pred             ----cc-cccCCc------hhHH--------------------HHHHHhCC-----ccC------CCCCccchHhHHHHh
Q psy17138        111 ----HR-AYDVGT------RGNQ--------------------VVRELFGE-----DIA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 ----~~-~~~~~~------~~~~--------------------~~~~~~g~-----~~~------~~~~~~~r~~l~~~v  148 (212)
                          .. .|.++.      ...+                    ...+.++.     +..      -+.|+.+|..|+..+
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL  176 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI  176 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence                00 011110      1111                    11122221     001      123566788888899


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  ..+||+++++.
T Consensus       177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~  234 (274)
T PRK14265        177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQA--SRVADWTAFFN  234 (274)
T ss_pred             hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            99988  56889999999999999999988754 35778879988664  57899999985

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.13  E-value=3e-11  Score=110.76  Aligned_cols=158  Identities=14%  Similarity=0.092  Sum_probs=104.2

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-----------  109 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-----------  109 (212)
                      ...+++.++++...  .-..++++++..++|..++|+|+||||||||+++|.++     |...++...+           
T Consensus       316 ~i~~~~v~~~y~~~--~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       316 HLSVENVTIVPPGG--KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             eEEEEEEEEEcCCC--CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence            35566766666421  12357888999999999999999999999999999986     3333332111           


Q ss_pred             ----ccccc-------------cCC--chh---------HHHHHHHh--CCccC-------CCCCccchHhHHHHhcCCh
Q psy17138        110 ----GHRAY-------------DVG--TRG---------NQVVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       110 ----~~~~~-------------~~~--~~~---------~~~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~  152 (212)
                          .++.+             .+.  ...         ....++.+  |.+..       -+.|+.+|-.+++.+.++|
T Consensus       394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~  473 (544)
T TIGR01842       394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP  473 (544)
T ss_pred             eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence                01100             000  000         01122222  11110       1346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +  +++++.+.+++...+.+.+.+.+.....+.+++-+|-+..   .+.||++++++-
T Consensus       474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~---~~~~d~i~~l~~  528 (544)
T TIGR01842       474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL---LGCVDKILVLQD  528 (544)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH---HHhCCEEEEEEC
Confidence            8  6688999999999999988887764334677777888753   357999998863

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.13  E-value=1.1e-10  Score=94.27  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=94.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC-------Cchh------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV-------GTRG------  120 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~-------~~~~------  120 (212)
                      .++++++...+|++++|+|+||||||||+++|.++     |...++...+.     . ..|.+       ....      
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~   96 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF   96 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence            57778899999999999999999999999999987     43334332110     0 00110       0011      


Q ss_pred             -----------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17138        121 -----------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES  180 (212)
Q Consensus       121 -----------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~  180 (212)
                                 ....++.+|....       -+.|+.+|-.++..+..+|+  +++++.+.+++...+.+.+.+.+....
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  176 (207)
T PRK13539         97 WAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ  176 (207)
T ss_pred             HHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence                       1223333333211       12356667788888888888  568899999999999999999876534


Q ss_pred             CcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       181 ~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      ...+++.+|.+.+..  .  |+++-+..+
T Consensus       177 ~~tiii~sH~~~~~~--~--~~~~~~~~~  201 (207)
T PRK13539        177 GGIVIAATHIPLGLP--G--ARELDLGPF  201 (207)
T ss_pred             CCEEEEEeCCchhhc--c--CcEEeecCc
Confidence            567788899987652  2  777766543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.13  E-value=8e-11  Score=108.91  Aligned_cols=139  Identities=17%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-----------eeCCcccc-----------ccccCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-----------INCDQLGH-----------RAYDVG  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-----------i~~D~i~~-----------~~~~~~  117 (212)
                      .+.+++ .+.+|.++||+|+|||||||++++|+++     |-..           +++..+..           -.+.++
T Consensus        89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q  167 (590)
T PRK13409         89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ  167 (590)
T ss_pred             eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence            455566 6899999999999999999999999986     3221           22211100           001011


Q ss_pred             c----------------------hhHHHHHHHhCCccC-C------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        118 T----------------------RGNQVVRELFGEDIA-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       118 ~----------------------~~~~~~~~~~g~~~~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      .                      .....+++.+|.... +      +.|+.+|-.++..+..+|+  +++++.+.+++..
T Consensus       168 ~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~  247 (590)
T PRK13409        168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ  247 (590)
T ss_pred             chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            0                      011233344444321 1      2367788899999999998  6688999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.++++.. ...+++-+|.+.+.  ..+||+++++.
T Consensus       248 ~~~l~~~i~~l~~-g~tvIivsHd~~~l--~~~~D~v~vl~  285 (590)
T PRK13409        248 RLNVARLIRELAE-GKYVLVVEHDLAVL--DYLADNVHIAY  285 (590)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            9999999988765 67788889998764  57899998874

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.13  E-value=2.4e-11  Score=114.25  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=103.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++++++|...  .-..++++++..++|+.++|+|+||||||||+++|.++     |...+++-.+.           
T Consensus       452 I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  529 (686)
T TIGR03797       452 IEVDRVTFRYRPD--GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL  529 (686)
T ss_pred             EEEEEEEEEcCCC--CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence            4567777777422  12357889999999999999999999999999999987     44444432221           


Q ss_pred             ----cccccCC--------------chhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCChH-
Q psy17138        111 ----HRAYDVG--------------TRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ----~~~~~~~--------------~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                          ++.+...              .......++..|.           +. .      -+.|+.+|-.+++.+.++|+ 
T Consensus       530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i  609 (686)
T TIGR03797       530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI  609 (686)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence                1111100              0111111221111           10 0      13467788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       .++++.+-+++...+.+.+.+.+.   .+++++-+|-+..   -..||++++++
T Consensus       610 LiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~---i~~~D~Iivl~  658 (686)
T TIGR03797       610 LLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST---IRNADRIYVLD  658 (686)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH---HHcCCEEEEEE
Confidence             568899999999999998888775   2577777998744   25699999885

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.13  E-value=2.6e-11  Score=112.24  Aligned_cols=154  Identities=18%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++.+++|..   ....++++++..++|+.++|+|+||||||||+++|.++     |...++...+.           
T Consensus       341 i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i  417 (592)
T PRK10790        341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV  417 (592)
T ss_pred             EEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            445566665531   12357888999999999999999999999999999986     44455543221           


Q ss_pred             ----cccccCC--------------chhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        111 ----HRAYDVG--------------TRGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ----~~~~~~~--------------~~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                          ++.+...              .......++..|.           +..       -+.|+.+|-.+++.+..+|+ 
T Consensus       418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i  497 (592)
T PRK10790        418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI  497 (592)
T ss_pred             EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence                1111110              0111122222221           100       13467788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+-+++...+.+.+.+.+... .+++++-+|-+..   ...||++++++
T Consensus       498 lllDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~---l~~~D~ii~l~  548 (592)
T PRK10790        498 LILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST---IVEADTILVLH  548 (592)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH---HHhCCEEEEEE
Confidence             66889999999999999888877643 4677777998744   35799999885

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.13  E-value=7.2e-11  Score=107.95  Aligned_cols=142  Identities=19%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcc-----------ccc-cccC---------Cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQL-----------GHR-AYDV---------GT  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i-----------~~~-~~~~---------~~  118 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++    |...++...+           .+. .|.+         ..
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~  379 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL  379 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence            467889999999999999999999999999999986    2223332111           000 0100         00


Q ss_pred             h-----------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        119 R-----------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       119 ~-----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                      .                       ....+++.+|..  ..+      +.|+.+|..++..+..+|+  +++++.+.++|.
T Consensus       380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~  459 (529)
T PRK15134        380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT  459 (529)
T ss_pred             cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence            0                       111233445542  111      3467778899999999998  668999999999


Q ss_pred             HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.+.+.. .....+++-+|.+.+.  ..+||+++++.
T Consensus       460 ~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~--~~~~d~i~~l~  500 (529)
T PRK15134        460 VQAQILALLKSLQQKHQLAYLFISHDLHVV--RALCHQVIVLR  500 (529)
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence            9999999998775 3345777779998764  46899999885

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.13  E-value=2.5e-11  Score=112.14  Aligned_cols=140  Identities=20%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcc---------------cccccc---------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQL---------------GHRAYD---------  115 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i---------------~~~~~~---------  115 (212)
                      ..++++++..++|..++|+|+||||||||+++|.++    |...++...+               .++.+.         
T Consensus       364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI  443 (588)
T PRK11174        364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNV  443 (588)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHh
Confidence            356788999999999999999999999999999986    3333333211               111111         


Q ss_pred             ----CC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        116 ----VG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       116 ----~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                          +.  .+.+.         ..+..+  |.+..       -+.|+.+|-.|++.+..+|+  ++++.++.+++...+.
T Consensus       444 ~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~  523 (588)
T PRK11174        444 LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL  523 (588)
T ss_pred             hcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence                10  01111         112222  11111       13467889999999999998  6688899999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.. +.+++++-+|-+..   ...||++++++
T Consensus       524 i~~~l~~~~-~~~TvIiItHrl~~---i~~aD~Iivl~  557 (588)
T PRK11174        524 VMQALNAAS-RRQTTLMVTHQLED---LAQWDQIWVMQ  557 (588)
T ss_pred             HHHHHHHHh-CCCEEEEEecChHH---HHhCCEEEEEe
Confidence            988887764 45667776888743   35799999885

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=8.8e-11  Score=99.50  Aligned_cols=154  Identities=13%  Similarity=0.091  Sum_probs=102.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcc-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQL-------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i-------  109 (212)
                      ..+++.+++|..    ...++++++....|++++|+|+||||||||+++|.++.          ...++...+       
T Consensus        40 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         40 VVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             EEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            456666666632    13567788999999999999999999999999999852          112222111       


Q ss_pred             ---cccc-ccCCc------h----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        110 ---GHRA-YDVGT------R----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       110 ---~~~~-~~~~~------~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                         .+.+ |.+..      .                      ......+.+|..     ..      -+.|+.+|..|+.
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr  195 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR  195 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence               0000 11110      0                      001122233321     11      1235677888998


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.+... ...+++.+|.+.+.  .++||++++++
T Consensus       196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~--~~~~d~i~~L~  255 (286)
T PRK14275        196 TLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQA--SRVSDYTMFFY  255 (286)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999998  56888999999999999999987754 35778889988764  46899999885

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.12  E-value=5.1e-11  Score=100.33  Aligned_cols=142  Identities=15%  Similarity=0.058  Sum_probs=93.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------------eeeeCCccc--------cc-cccCC----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------------GLINCDQLG--------HR-AYDVG----  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------------~vi~~D~i~--------~~-~~~~~----  117 (212)
                      ..++++++....|++++|+|+||||||||+++|+++-.             ..++...+.        +. .|.+.    
T Consensus        15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~   94 (272)
T PRK13547         15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP   94 (272)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence            35677889999999999999999999999999997521             122221110        00 01000    


Q ss_pred             ---chh-------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcC---------ChH
Q psy17138        118 ---TRG-------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS---------NKD  153 (212)
Q Consensus       118 ---~~~-------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~---------~~~  153 (212)
                         ...                         ....++.+|..-.       -+.|+.+|..++..+.+         +|+
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~  174 (272)
T PRK13547         95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR  174 (272)
T ss_pred             CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence               000                         1122223332211       12355667788877773         777


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.++++. .....+++.+|.+.+.  .++||+++++.
T Consensus       175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~--~~~~d~i~~l~  229 (272)
T PRK13547        175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA--ARHADRIAMLA  229 (272)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence              6688999999999999999998775 3256777779988653  46899998885

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.12  E-value=8.3e-11  Score=107.34  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             cceechhhhhhhh-ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-CCc-----------
Q psy17138         47 DKLSSSNLRMREL-GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-CDQ-----------  108 (212)
Q Consensus        47 ~~iss~~~r~~~~-g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-~D~-----------  108 (212)
                      ..+++.+++|... +.....++++++...+|.+++|+|+||||||||+++|+++     |...++ ...           
T Consensus       280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~  359 (520)
T TIGR03269       280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG  359 (520)
T ss_pred             EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence            4456666665321 0112357788999999999999999999999999999987     334443 210           


Q ss_pred             ---cccc-cccCCc-------hh--------------------HHHHHHHhCCcc------CC------CCCccchHhHH
Q psy17138        109 ---LGHR-AYDVGT-------RG--------------------NQVVRELFGEDI------AL------PDGSIDRKKLG  145 (212)
Q Consensus       109 ---i~~~-~~~~~~-------~~--------------------~~~~~~~~g~~~------~~------~~~~~~r~~l~  145 (212)
                         ..+. .|.+..       ..                    ...++..+|...      .+      +.|+.+|..++
T Consensus       360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la  439 (520)
T TIGR03269       360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA  439 (520)
T ss_pred             HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence               0000 111110       00                    112234455421      11      23567788899


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+..+|+  +++++.+.++|...+.+.+.+.++. .....+++-+|.+.+.  ..+||+++++.
T Consensus       440 ral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~--~~~~d~i~~l~  502 (520)
T TIGR03269       440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV--LDVCDRAALMR  502 (520)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88889998  6689999999999999999998775 3345777779998764  57899999885

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.12  E-value=1e-10  Score=98.11  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-----
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-----  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-----  110 (212)
                      ...+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-.          ..++...+.     
T Consensus        20 ~l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         20 ALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             EEEEeeEEEEECC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            3456676666631    246788899999999999999999999999999998631          222321110     


Q ss_pred             -----c-ccccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHH
Q psy17138        111 -----H-RAYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLG  145 (212)
Q Consensus       111 -----~-~~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~  145 (212)
                           . -.|.+..      ...                      ...++.++..     ..      -+.|+.+|-.++
T Consensus        96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la  175 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA  175 (267)
T ss_pred             hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence                 0 0111110      000                      1112222221     00      123556677888


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  .++||+++++.
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~--~~~~d~i~~l~  236 (267)
T PRK14237        176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQA--ARASDYTAFFY  236 (267)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH--HHhcCEEEEEE
Confidence            88888888  56888899999999999999988753 45777778988653  47899999885

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.12  E-value=1.3e-10  Score=97.62  Aligned_cols=154  Identities=14%  Similarity=0.108  Sum_probs=102.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------  110 (212)
                      .++.+.+++|..    ...+.++++...+|.+++|+|+||||||||+++|+++.          ...++...+.      
T Consensus        26 l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~  101 (272)
T PRK14236         26 LEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV  101 (272)
T ss_pred             EEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence            456677776632    13567788999999999999999999999999999872          1223221111      


Q ss_pred             ----cc-cccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138        111 ----HR-AYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ----~~-~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~  146 (212)
                          +. .|.+..      ..                      .....+.++..     ..      -+.|+.+|-.++.
T Consensus       102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  181 (272)
T PRK14236        102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR  181 (272)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence                00 011100      00                      11112223321     00      1235667778888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  ..+||++++++
T Consensus       182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~  241 (272)
T PRK14236        182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQA--ARVSDYTAFMY  241 (272)
T ss_pred             HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence            8888888  56888999999999999999988754 36778889998763  46899999885

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=9.5e-11  Score=97.21  Aligned_cols=153  Identities=10%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCcc--------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQL--------  109 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i--------  109 (212)
                      ++.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++..          ..++...+        
T Consensus         6 ~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          6 SAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             EEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            35556666531    235677889999999999999999999999999998632          11221111        


Q ss_pred             --cccc-ccCC------chh----------------------HHHHHHHhCCc-----cCC------CCCccchHhHHHH
Q psy17138        110 --GHRA-YDVG------TRG----------------------NQVVRELFGED-----IAL------PDGSIDRKKLGAI  147 (212)
Q Consensus       110 --~~~~-~~~~------~~~----------------------~~~~~~~~g~~-----~~~------~~~~~~r~~l~~~  147 (212)
                        .+.+ |.+.      ...                      .....+.++..     ...      +.|+.+|-.++..
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara  161 (251)
T PRK14251         82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA  161 (251)
T ss_pred             HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence              0000 1000      000                      11122233321     011      2356667788888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.++|+  +++++.+.++|...+.+.+.+.+... ...+++.+|.+.+.  .++||+++++.
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~--~~~~d~i~~l~  220 (251)
T PRK14251        162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQA--GRISDQTAFLM  220 (251)
T ss_pred             HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHH--HhhcCEEEEEE
Confidence            888888  56888999999999999999987753 36778879988663  46899999875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.12  E-value=8.3e-11  Score=109.81  Aligned_cols=150  Identities=16%  Similarity=0.116  Sum_probs=100.2

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-cc---ccc-ccCCc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-LG---HRA-YDVGT  118 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-i~---~~~-~~~~~  118 (212)
                      +.+.++.|..    ...++++++...+|.++||+|+||||||||+++|+++     |...++.+. +.   ... .....
T Consensus         6 i~~ls~~~~~----~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~   81 (635)
T PRK11147          6 IHGAWLSFSD----APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG   81 (635)
T ss_pred             EeeEEEEeCC----ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence            4555566631    2467888999999999999999999999999999986     333333221 00   000 00000


Q ss_pred             -------------------------------------------------------hhHHHHHHHhCCccC-----CCCCc
Q psy17138        119 -------------------------------------------------------RGNQVVRELFGEDIA-----LPDGS  138 (212)
Q Consensus       119 -------------------------------------------------------~~~~~~~~~~g~~~~-----~~~~~  138 (212)
                                                                             .....++..+|...-     -+.|+
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe  161 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW  161 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence                                                                   001112222332110     13456


Q ss_pred             cchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        139 IDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       139 ~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|..|+..+..+|+  +++++.+.+++.....+.+.+.+..   ..+++-+|.....  ..+||++|.+.
T Consensus       162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l--~~~~d~i~~L~  227 (635)
T PRK11147        162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFI--RNMATRIVDLD  227 (635)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHH--HHhcCeEEEEE
Confidence            778899999999998  6689999999999999999998752   3677779998764  46899999885

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.12  E-value=1.3e-10  Score=105.46  Aligned_cols=158  Identities=11%  Similarity=0.055  Sum_probs=105.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCccc----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQLG----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i~----------  110 (212)
                      .++++.+++|...+ ....++++++...+|++++|+|+||||||||+++|+++-.      ..++...+.          
T Consensus       258 l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~  336 (500)
T TIGR02633       258 LEARNLTCWDVINP-HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA  336 (500)
T ss_pred             EEEeCCcccccccc-cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            34555555552111 1246788899999999999999999999999999998632      223221110          


Q ss_pred             ------cc----cccCC---------------------c-----hhHHHHHHHhCCcc--CC------CCCccchHhHHH
Q psy17138        111 ------HR----AYDVG---------------------T-----RGNQVVRELFGEDI--AL------PDGSIDRKKLGA  146 (212)
Q Consensus       111 ------~~----~~~~~---------------------~-----~~~~~~~~~~g~~~--~~------~~~~~~r~~l~~  146 (212)
                            .+    .+.+.                     .     .....+++.++...  .+      +.|+.+|..++.
T Consensus       337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~  416 (500)
T TIGR02633       337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK  416 (500)
T ss_pred             CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence                  00    00000                     0     01223345555421  11      235677888998


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~--~~~~d~v~~l~  477 (500)
T TIGR02633       417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV--LGLSDRVLVIG  477 (500)
T ss_pred             HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            8888888  56899999999999999988887763356788889998764  57899999874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.11  E-value=1.4e-10  Score=106.82  Aligned_cols=151  Identities=11%  Similarity=0.041  Sum_probs=100.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc-ccCCc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA-YDVGT  118 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~-~~~~~  118 (212)
                      +++.+++|.. +  ...++++++....|.+++|+|+||||||||+++|+++     |...++.. .+   ..+. +.+..
T Consensus         9 i~~l~~~y~~-~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~   85 (556)
T PRK11819          9 MNRVSKVVPP-K--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEK   85 (556)
T ss_pred             EeeEEEEeCC-C--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence            5566666631 1  2367889999999999999999999999999999986     22222211 01   0110 00000


Q ss_pred             hh---------------------------------------------------------HHHHHHHhCCccC------CC
Q psy17138        119 RG---------------------------------------------------------NQVVRELFGEDIA------LP  135 (212)
Q Consensus       119 ~~---------------------------------------------------------~~~~~~~~g~~~~------~~  135 (212)
                      ..                                                         .......+|....      -+
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LS  165 (556)
T PRK11819         86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLS  165 (556)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcC
Confidence            00                                                         0111122222111      13


Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|+.+|-.|+..+..+|+  +++++.+.++|.....+.+.+++..   ..+++-+|.+.+.  ..+||++|++.
T Consensus       166 gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~--~~~~d~i~~l~  234 (556)
T PRK11819        166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFL--DNVAGWILELD  234 (556)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHH--HhhcCeEEEEe
Confidence            467778899999999998  6689999999999999999888752   3677779998664  47899999886

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=8.8e-11  Score=98.13  Aligned_cols=153  Identities=13%  Similarity=0.012  Sum_probs=99.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe----------eeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG----------LINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~----------vi~~D~i~--------  110 (212)
                      +++.+++|..    ...++++++...+|++++|+|+||||||||+++|+++..+          .++...+.        
T Consensus        10 ~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~   85 (261)
T PRK14258         10 VNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR   85 (261)
T ss_pred             EeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence            5555555531    1356778899999999999999999999999999987221          12211110        


Q ss_pred             --c-ccccCC------chhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVG------TRGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~------~~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        . -.|.+.      ....                      ....+.++..     ..      -+.|+.+|-.++..+
T Consensus        86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  165 (261)
T PRK14258         86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL  165 (261)
T ss_pred             hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence              0 001010      0110                      1111222210     00      123566677888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.++. .....+++.+|.+.+.  .++||+++++.
T Consensus       166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i--~~~~d~i~~l~  225 (261)
T PRK14258        166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV--SRLSDFTAFFK  225 (261)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHhcCEEEEEc
Confidence            88888  5688899999999999999888764 3356777779998764  57999999886

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=1.6e-10  Score=97.52  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------  110 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+|+||||||||+++|.++..          ..++...+.      
T Consensus        22 l~i~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         22 MAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEeeEEEEECC----EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            467777777752    135778899999999999999999999999999998632          122221110      


Q ss_pred             ---c-ccccCC------chhH----------------------HHHHHHhCCcc-----C------CCCCccchHhHHHH
Q psy17138        111 ---H-RAYDVG------TRGN----------------------QVVRELFGEDI-----A------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~-~~~~~~------~~~~----------------------~~~~~~~g~~~-----~------~~~~~~~r~~l~~~  147 (212)
                         . -.|.+.      ...+                      ...++.+|...     +      -+.|+.+|..|+..
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra  177 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART  177 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence               0 001111      0010                      11223333321     0      12356678888888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|.  +++++.+.+++...+.+.+.+.++... ..+++.+|.+.+.  ..+||+++++.
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~--~~~~dri~~l~  236 (276)
T PRK14271        178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQA--ARISDRAALFF  236 (276)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            888888  568889999999999999988877543 6778889988653  57899998875

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.10  E-value=9e-11  Score=94.25  Aligned_cols=130  Identities=17%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------c-ccc-------CCchh---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------R-AYD-------VGTRG---  120 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~-~~~-------~~~~~---  120 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++     |...++...+.+       . .|.       +....   
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   94 (200)
T PRK13540         15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN   94 (200)
T ss_pred             eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence            357778899999999999999999999999999987     433444322210       0 011       11111   


Q ss_pred             -------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138        121 -------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS  178 (212)
Q Consensus       121 -------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~  178 (212)
                                   ....++.++....       -+.|+.+|-.++..+..+|+  +++++.+.+++.....+.+.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~  174 (200)
T PRK13540         95 CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR  174 (200)
T ss_pred             HHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence                         1223333333211       12356677788888889988  5688889999999999999998765


Q ss_pred             CCCcEEEEEeccccc
Q psy17138        179 ESHKVIVIEAAVLLS  193 (212)
Q Consensus       179 ~~~~~vvie~~~l~e  193 (212)
                      .....+++.+|....
T Consensus       175 ~~~~tiii~sh~~~~  189 (200)
T PRK13540        175 AKGGAVLLTSHQDLP  189 (200)
T ss_pred             HcCCEEEEEeCCchh
Confidence            334567777887543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=1.8e-10  Score=95.60  Aligned_cols=152  Identities=15%  Similarity=0.119  Sum_probs=99.5

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG--------  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~--------  110 (212)
                      +++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++          |...++...+.        
T Consensus         7 ~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   82 (251)
T PRK14249          7 IRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN   82 (251)
T ss_pred             EEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence            4455555531    1356788899999999999999999999999999986          33333322111        


Q ss_pred             --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138        111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v  148 (212)
                        + -.|.+.      ...                      .......+|..     ..      -+.|+.+|..++..+
T Consensus        83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  162 (251)
T PRK14249         83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL  162 (251)
T ss_pred             hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence              0 001000      000                      00111122210     01      123566778888888


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.+++.....+.+.+.++. ....+++.+|.+.+.  .++||+++++.
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~--~~~~d~i~~l~  220 (251)
T PRK14249        163 AIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQA--ARASDWTGFLL  220 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH--HhhCCEEEEEe
Confidence            89988  5688899999999999999888774 346788889988764  47899999885

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.10  E-value=5.4e-11  Score=109.50  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++.++++...+  ...++++++..++|.+++|+|+||||||||+++|.++     |...++...+            
T Consensus       331 i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i  408 (571)
T TIGR02203       331 VEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV  408 (571)
T ss_pred             EEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence            45666666663221  1346778899999999999999999999999999987     4444443211            


Q ss_pred             ---ccccccCC----------------chhHHHHHHHhC-----------Ccc-C------CCCCccchHhHHHHhcCCh
Q psy17138        110 ---GHRAYDVG----------------TRGNQVVRELFG-----------EDI-A------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       110 ---~~~~~~~~----------------~~~~~~~~~~~g-----------~~~-~------~~~~~~~r~~l~~~vf~~~  152 (212)
                         .++.+...                .......++..|           .+. .      -+.|+.+|-.+++.+.++|
T Consensus       409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~  488 (571)
T TIGR02203       409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA  488 (571)
T ss_pred             eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence               11111111                011111111111           110 0      1346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++++-+++...+.+.+.+.+.. +.+++++-+|-..   +...||+++.++
T Consensus       489 ~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~---~~~~~D~ii~l~  541 (571)
T TIGR02203       489 PILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS---TIEKADRIVVMD  541 (571)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH---HHHhCCEEEEEe
Confidence            8  5689999999999999988887764 4467777788873   357899999885

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0058|consensus

Probab=99.09  E-value=1.1e-10  Score=107.38  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=101.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..-.++.+.|+... ....++++++..+.|++++|+|||||||||++++|..+     |...+|+-++.           
T Consensus       466 IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I  544 (716)
T KOG0058|consen  466 IEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI  544 (716)
T ss_pred             EEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence            34455555554321 33566889999999999999999999999999999986     44555544331           


Q ss_pred             ----ccc------------ccCCc---h-h--------HHHHHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRA------------YDVGT---R-G--------NQVVRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~------------~~~~~---~-~--------~~~~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~  153 (212)
                          +|.            |....   + .        -.+.+..|.+..         .-+.|+.+|-.|++.+..+|.
T Consensus       545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~  624 (716)
T KOG0058|consen  545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR  624 (716)
T ss_pred             eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence                110            11110   0 0        112233332221         124578899999999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        .+++.+..++.+-...+++.+.+...+ .+|++=+|=|---   +.+|++++++
T Consensus       625 VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLSTV---~~Ad~Ivvi~  676 (716)
T KOG0058|consen  625 VLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLSTV---RHADQIVVID  676 (716)
T ss_pred             EEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhhHh---hhccEEEEEc
Confidence              568888889888888888888666444 4555547877532   3578888775

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.09  E-value=4.7e-11  Score=112.71  Aligned_cols=153  Identities=17%  Similarity=0.143  Sum_probs=102.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++++++|.. +  -..++++++..++|..++|+|+||||||||+++|.++     |...+++-.+            
T Consensus       474 I~~~~vsf~y~~-~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  550 (708)
T TIGR01193       474 IVINDVSYSYGY-G--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI  550 (708)
T ss_pred             EEEEEEEEEcCC-C--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence            456777777741 1  2467889999999999999999999999999999987     4444443221            


Q ss_pred             ---cccc------------cc--CC--chhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCCh
Q psy17138        110 ---GHRA------------YD--VG--TRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       110 ---~~~~------------~~--~~--~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~  152 (212)
                         .++.            +.  +.  .......++..|.           +. .      -+.|+.+|-.+++.+.++|
T Consensus       551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p  630 (708)
T TIGR01193       551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS  630 (708)
T ss_pred             EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence               0110            10  11  0111111221111           10 0      1346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++++-+++...+.+.+.+.+.  ..+++++-+|-+..   ...||++++++
T Consensus       631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~---~~~~D~i~~l~  682 (708)
T TIGR01193       631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV---AKQSDKIIVLD  682 (708)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH---HHcCCEEEEEE
Confidence            8  568889999999999998888764  24577777888754   35799999885

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.08  E-value=6.1e-10  Score=88.43  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=99.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe-----eeeCCcc-----------ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG-----LINCDQL-----------GHR  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~-----vi~~D~i-----------~~~  112 (212)
                      +|..++.|...+  ...++++++....|.++.++|||||||||++++++++-.+     -++.-.|           ..+
T Consensus         6 ~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~   83 (259)
T COG4525           6 VSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE   83 (259)
T ss_pred             hhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccC
Confidence            444455554332  4567889999999999999999999999999999987221     1221111           011


Q ss_pred             cccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        113 AYDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       113 ~~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                      .+.|.-.                     ...+.....|..-.       -+.|+.+|.-++..+--+|+  +++++-..+
T Consensus        84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl  163 (259)
T COG4525          84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL  163 (259)
T ss_pred             ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence            1111100                     11222333333221       14578889999999999998  446666677


Q ss_pred             hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      +...++.+++.+.++- ..++-+++-+|.+.|+=  -+.++.++++-.
T Consensus       164 Da~tRe~mQelLldlw~~tgk~~lliTH~ieEAl--flatrLvvlsp~  209 (259)
T COG4525         164 DALTREQMQELLLDLWQETGKQVLLITHDIEEAL--FLATRLVVLSPG  209 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH--hhhheeEEecCC
Confidence            7777888877775553 44566666699998873  366888777543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.08  E-value=7.2e-11  Score=120.58  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=109.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------ccc-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HRA-  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~~-  113 (212)
                      ..+++.+++|...  ....++++++...+|++++|+|+|||||||++++|+|+     |...+++..+.       +.+ 
T Consensus       929 L~I~nLsK~y~~~--~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257       929 VCVKNLVKIFEPS--GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred             EEEEeEEEEecCC--CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence            4567777776321  12467889999999999999999999999999999997     33344432221       000 


Q ss_pred             ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                      |.++.       .                     ....+++.+|..-.       -+.|+.+|..++..+..+|+  +++
T Consensus      1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257      1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            11110       0                     11223344443211       12366778888888889988  668


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.++|..++.+++.+++.+ ....+++.+|.+.++  ..+||+++++.
T Consensus      1087 EPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea--~~laDrI~iL~ 1134 (2272)
T TIGR01257      1087 EPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEA--DLLGDRIAIIS 1134 (2272)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            9999999999999999998875 456888889999886  46899999875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.07  E-value=2.3e-10  Score=105.23  Aligned_cols=152  Identities=12%  Similarity=0.060  Sum_probs=100.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccccc-cCC
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRAY-DVG  117 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~~-~~~  117 (212)
                      .+.+.+++|.. +  ...++++++...+|.+++|+|+||||||||+++|+++     |...++.. .+   ..+.. .+.
T Consensus         6 ~~~nls~~~~~-~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~   82 (552)
T TIGR03719         6 TMNRVSKVVPP-K--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT   82 (552)
T ss_pred             EEeeEEEecCC-C--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence            35566666641 1  1357889999999999999999999999999999986     32222211 11   00000 000


Q ss_pred             chhH---------------------------------------------------------HHHHHHhCCccC------C
Q psy17138        118 TRGN---------------------------------------------------------QVVRELFGEDIA------L  134 (212)
Q Consensus       118 ~~~~---------------------------------------------------------~~~~~~~g~~~~------~  134 (212)
                      ....                                                         ......+|....      -
T Consensus        83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L  162 (552)
T TIGR03719        83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL  162 (552)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence            0000                                                         001112222111      1


Q ss_pred             CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.|+.+|-.++..+..+|+  +++++.+.++|.....+.+.+.+.  . ..+++-+|.+...  ..+||+++++.
T Consensus       163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~-~tvIiisHd~~~~--~~~~d~v~~l~  232 (552)
T TIGR03719       163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--P-GTVVAVTHDRYFL--DNVAGWILELD  232 (552)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--C-CeEEEEeCCHHHH--HhhcCeEEEEE
Confidence            3467778899999999998  678999999999999999888764  2 3677779988653  56899999885

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.5e-10  Score=106.00  Aligned_cols=152  Identities=8%  Similarity=0.028  Sum_probs=102.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc---c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA---Y  114 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~---~  114 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++.. .+   ..+.   +
T Consensus       320 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~  395 (530)
T PRK15064        320 LEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF  395 (530)
T ss_pred             EEEEeeEEeeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence            346666666532    1356788999999999999999999999999999986     22222210 01   0110   0


Q ss_pred             cCC----------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        115 DVG----------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       115 ~~~----------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      .+.                ......++..+|..  ..+      +.|+.+|..++..+..+|+  +++++.+.+++....
T Consensus       396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  475 (530)
T PRK15064        396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE  475 (530)
T ss_pred             CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            000                01122334445531  111      2367778889999999998  668999999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.  + ..+++-+|.+.+.  ..+||+++++.
T Consensus       476 ~l~~~l~~~--~-~tvi~vsHd~~~~--~~~~d~i~~l~  509 (530)
T PRK15064        476 SLNMALEKY--E-GTLIFVSHDREFV--SSLATRIIEIT  509 (530)
T ss_pred             HHHHHHHHC--C-CEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999988875  2 3777779998764  46899999885

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.07  E-value=2.1e-10  Score=91.33  Aligned_cols=33  Identities=12%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             CCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        179 ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       179 ~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                      ....+|++|+.+++. .++.++||.+|+|++|.+
T Consensus       109 ~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d  142 (187)
T cd02024         109 EDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYE  142 (187)
T ss_pred             CCCcEEEEechHhcCCHHHHhhcCceeEecCCHH
Confidence            456799999999986 578899999999999976

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.07  E-value=2.1e-10  Score=96.46  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=98.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------  110 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-          ...++...+.       
T Consensus        26 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~  101 (271)
T PRK14238         26 DTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE  101 (271)
T ss_pred             EEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence            34555555531    13567788999999999999999999999999999862          2223321110       


Q ss_pred             ---c-ccccCCc------hhHH----------------------HHHHHhCC--cc---C------CCCCccchHhHHHH
Q psy17138        111 ---H-RAYDVGT------RGNQ----------------------VVRELFGE--DI---A------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~-~~~~~~~------~~~~----------------------~~~~~~g~--~~---~------~~~~~~~r~~l~~~  147 (212)
                         . -.|.+..      ...+                      ...+.++.  .+   .      -+.|+.+|-.++..
T Consensus       102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara  181 (271)
T PRK14238        102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC  181 (271)
T ss_pred             HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence               0 0011110      0000                      11111110  00   0      12356677788888


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  ..+||+++++.
T Consensus       182 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i--~~~~d~i~~l~  240 (271)
T PRK14238        182 LAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQA--ARISDKTAFFL  240 (271)
T ss_pred             HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence            888888  56888899999999999999887754 46778889988663  57899999875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.7e-10  Score=96.48  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc----------cc-cccCC-----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG----------HR-AYDVG-----  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~----------~~-~~~~~-----  117 (212)
                      ..++++++...+|++++|+|+||||||||+++|+++..          ..++...+.          +. .|.+.     
T Consensus        22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  101 (261)
T PRK14263         22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF  101 (261)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence            35677889999999999999999999999999987631          122221110          00 01000     


Q ss_pred             -ch--------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        118 -TR--------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       118 -~~--------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                       ..                    .....++.+|..     ..      -+.|+.+|..++..+..+|+  +++++.+.++
T Consensus       102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD  181 (261)
T PRK14263        102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD  181 (261)
T ss_pred             cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence             00                    011223333321     00      13356678888888888888  5688899999


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.....+.+.+.++.. ...+++-+|.+.+.  .++||+++++.
T Consensus       182 ~~~~~~l~~~l~~~~~-~~tii~isH~~~~i--~~~~d~v~~l~  222 (261)
T PRK14263        182 PIATRRVEELMVELKK-DYTIALVTHNMQQA--IRVADTTAFFS  222 (261)
T ss_pred             HHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEe
Confidence            9999999999988753 35777779988763  57899999985

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.07  E-value=8.4e-11  Score=108.77  Aligned_cols=154  Identities=18%  Similarity=0.167  Sum_probs=101.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++.++++.  +. -..++++++...+|.+++|+|+||||||||+++|.++     |...++...+            
T Consensus       335 I~~~~vsf~y~--~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i  411 (588)
T PRK13657        335 VEFDDVSFSYD--NS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI  411 (588)
T ss_pred             EEEEEEEEEeC--CC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            44666666653  11 1357888999999999999999999999999999987     4444443211            


Q ss_pred             ---cccccc-------------CC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAYD-------------VG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~~-------------~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+.             +.  .....         ..+..+  |.+..       -+.|+.+|-.+++.+.++|+
T Consensus       412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~  491 (588)
T PRK13657        412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP  491 (588)
T ss_pred             EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence               111110             10  01111         111111  11110       13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+-+++...+.+.+.+.+.. +.+++++-+|-+..   ...||+++.++
T Consensus       492 iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~---~~~~D~ii~l~  543 (588)
T PRK13657        492 ILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST---VRNADRILVFD  543 (588)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH---HHhCCEEEEEE
Confidence              5688999999999999988887763 35677777888744   35799999885

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.7e-10  Score=99.74  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=102.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------  110 (212)
                      .+++.+++|...  .-..++++++...+|.++||+|+||||||||+++|.++.          ...+++..+.       
T Consensus        82 ~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~  159 (329)
T PRK14257         82 EIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL  159 (329)
T ss_pred             EEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            456666666321  123578889999999999999999999999999999752          2223322221       


Q ss_pred             ---c-ccccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138        111 ---H-RAYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAI  147 (212)
Q Consensus       111 ---~-~~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~  147 (212)
                         + -.|.+..      ..                      +....+.++..     ..      -+.|+.+|-.|++.
T Consensus       160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA  239 (329)
T PRK14257        160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA  239 (329)
T ss_pred             hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence               0 0011110      00                      11112222210     00      12366778889999


Q ss_pred             hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+|+  +++++.+.+++.....+.+.++++.. ...+++-+|.+...  .++||++++++
T Consensus       240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i--~~~~Driivl~  298 (329)
T PRK14257        240 IALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQA--QRISDETVFFY  298 (329)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999998  56888999999999999999987754 36777779998764  46799999985

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.8e-10  Score=95.60  Aligned_cols=154  Identities=12%  Similarity=0.037  Sum_probs=99.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------  110 (212)
                      ++++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.       
T Consensus         7 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          7 SVKNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EeeeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            35555555531    135677889999999999999999999999999997631          122221110       


Q ss_pred             ---c-ccccCCc------hh-----------------------HHHHHHHhCCcc-----C------CCCCccchHhHHH
Q psy17138        111 ---H-RAYDVGT------RG-----------------------NQVVRELFGEDI-----A------LPDGSIDRKKLGA  146 (212)
Q Consensus       111 ---~-~~~~~~~------~~-----------------------~~~~~~~~g~~~-----~------~~~~~~~r~~l~~  146 (212)
                         + -.|.+..      ..                       .....+.+|..-     .      -+.|+.+|-.++.
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  162 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR  162 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence               0 0011110      00                       012223334210     0      1234556777888


Q ss_pred             HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .+..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  ..+||++++++-
T Consensus       163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~--~~~~d~i~~l~~  223 (251)
T PRK14244        163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQA--KKVSDRVAFFQS  223 (251)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HhhcCEEEEEEC
Confidence            8888887  56888889999999999998887753 46788889988753  468999998863

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=2e-10  Score=107.23  Aligned_cols=152  Identities=15%  Similarity=0.121  Sum_probs=103.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc---cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR---AY  114 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~---~~  114 (212)
                      ..+.+..++|..    ...++++++...+|.++||+||||||||||+++|+++     |...++.. .+   ...   .+
T Consensus       313 l~~~~l~~~y~~----~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l  388 (638)
T PRK10636        313 LKMEKVSAGYGD----RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL  388 (638)
T ss_pred             EEEEeeEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence            456666666631    2356788999999999999999999999999999986     32222111 01   000   00


Q ss_pred             cCCc---------------hhHHHHHHHhCCcc--C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        115 DVGT---------------RGNQVVRELFGEDI--A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       115 ~~~~---------------~~~~~~~~~~g~~~--~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                      .+..               .....++..|+...  .      -+.|+.+|..|+..+.++|+  +++++++.+++.....
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~  468 (638)
T PRK10636        389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA  468 (638)
T ss_pred             CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            0000               01223344455321  1      13456778889989999988  6689999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.  +. .|++.+|.+...  ..+||++|++.
T Consensus       469 l~~~L~~~--~g-tvi~vSHd~~~~--~~~~d~i~~l~  501 (638)
T PRK10636        469 LTEALIDF--EG-ALVVVSHDRHLL--RSTTDDLYLVH  501 (638)
T ss_pred             HHHHHHHc--CC-eEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999876  23 677779998764  57899999885

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.9e-10  Score=98.40  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------  110 (212)
                      .+++.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++..          ..++...+.       
T Consensus        47 ~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~  122 (305)
T PRK14264         47 SVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV  122 (305)
T ss_pred             EEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence            46666666632    246788899999999999999999999999999998631          122221110       


Q ss_pred             ---c-ccccCCc------hh----------------------------------HHHHHHHhCCc-----cC------CC
Q psy17138        111 ---H-RAYDVGT------RG----------------------------------NQVVRELFGED-----IA------LP  135 (212)
Q Consensus       111 ---~-~~~~~~~------~~----------------------------------~~~~~~~~g~~-----~~------~~  135 (212)
                         + -.|.+..      ..                                  ...+++.++..     ..      -+
T Consensus       123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  202 (305)
T PRK14264        123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS  202 (305)
T ss_pred             HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence               0 0011110      00                                  01111222210     00      12


Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW  204 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~  204 (212)
                      .|+.+|..|+..+.++|+  +++++.+.+++.....+.+.++++..+ ..+++.+|.+.+.  ..+||+++
T Consensus       203 gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i--~~~~d~i~  270 (305)
T PRK14264        203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQA--ARISDQTA  270 (305)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHH--HHhcCEEE
Confidence            356677788888889988  568888999999999999999887543 5788889988764  46899964

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.06  E-value=2.4e-10  Score=95.82  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=102.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------  110 (212)
                      ..+++..++|..    ...++++++...+|.+++|+|+||||||||+++|+++-          ...++...+.      
T Consensus        20 l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~   95 (267)
T PRK14235         20 MRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV   95 (267)
T ss_pred             EEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence            345666666531    13567788999999999999999999999999999852          1223221110      


Q ss_pred             ----cc-cccCC------chh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHH
Q psy17138        111 ----HR-AYDVG------TRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLG  145 (212)
Q Consensus       111 ----~~-~~~~~------~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~  145 (212)
                          +. .|.+.      ...                       .....+.+|..     .+      -+.|+.+|..++
T Consensus        96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  175 (267)
T PRK14235         96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA  175 (267)
T ss_pred             HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence                00 01110      000                       11222333431     01      123566788888


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+..+|+  +++++.+.+++...+.+.+.+++... ...+++.+|.+.+.  ..+||++++++
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~--~~~~d~v~~l~  236 (267)
T PRK14235        176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQA--ARVSQRTAFFH  236 (267)
T ss_pred             HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHH--HhhCCEEEEEE
Confidence            88888888  56888999999999999999987754 35788889988763  57899998875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.06  E-value=1.6e-10  Score=104.78  Aligned_cols=155  Identities=13%  Similarity=0.031  Sum_probs=102.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCcc---------cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQL---------GH  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i---------~~  111 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-.      ..++...+         .+
T Consensus       261 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~  336 (490)
T PRK10938        261 IVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK  336 (490)
T ss_pred             EEEeceEEEECC----eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence            345555555531    135678899999999999999999999999999998622      12221000         00


Q ss_pred             -ccccCC-------------------------------c---hhHHHHHHHhCCcc-C-C------CCCccchHhHHHHh
Q psy17138        112 -RAYDVG-------------------------------T---RGNQVVRELFGEDI-A-L------PDGSIDRKKLGAIV  148 (212)
Q Consensus       112 -~~~~~~-------------------------------~---~~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~v  148 (212)
                       -.|.+.                               .   .....+++.+|... . +      +.|+.+|..++..+
T Consensus       337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al  416 (490)
T PRK10938        337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL  416 (490)
T ss_pred             hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH
Confidence             000000                               0   01123344455432 1 1      23566788888889


Q ss_pred             cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccccccccc-ccCeEEEEE
Q psy17138        149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQD-QVHEIWVTF  207 (212)
Q Consensus       149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~-~~d~v~~v~  207 (212)
                      ..+|+  +++++.+.++|.....+.+.+.++. .+...+++-+|.+.+.  .. +||+++++.
T Consensus       417 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~--~~~~~d~v~~l~  477 (490)
T PRK10938        417 VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA--PACITHRLEFVP  477 (490)
T ss_pred             hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh--hhhhheeEEEec
Confidence            89988  5689999999999999999998876 3334577779998765  34 589998874

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=2.9e-10  Score=95.21  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=101.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCcc-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQL-------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i-------  109 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+|+||||||||+++|+++..          ..++...+       
T Consensus        17 l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~   92 (265)
T PRK14252         17 SEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV   92 (265)
T ss_pred             EEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence            456777777642    146788899999999999999999999999999998632          22322111       


Q ss_pred             -----ccc-cccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhH
Q psy17138        110 -----GHR-AYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKL  144 (212)
Q Consensus       110 -----~~~-~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l  144 (212)
                           .+. .|.+..      ...                      ....+..+..     ..      -+.|+.+|-.|
T Consensus        93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  172 (265)
T PRK14252         93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI  172 (265)
T ss_pred             CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence                 011 111110      100                      1111122210     00      12345667788


Q ss_pred             HHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        145 GAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       145 ~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +..+..+|+  +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+.  ..+||++++++
T Consensus       173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~--~~~~d~i~~l~  234 (265)
T PRK14252        173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQA--ARVSDYTAYMY  234 (265)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            888888888  56888899999999999998887754 35777779988664  46899998875

>KOG0055|consensus

Probab=99.05  E-value=2.6e-10  Score=110.27  Aligned_cols=156  Identities=18%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ...+++.++|+.. .....+++.++..+.|..++|+|||||||||+..+|.++     |...+|..++.           
T Consensus       988 I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            4566777777633 344666788999999999999999999999999999986     66667766541           


Q ss_pred             ----cc----------c--ccCCchhHHHHHH--------Hh----CC--c-------cCCCCCccchHhHHHHhcCChH
Q psy17138        111 ----HR----------A--YDVGTRGNQVVRE--------LF----GE--D-------IALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~----------~--~~~~~~~~~~~~~--------~~----g~--~-------~~~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++          +  |.......+++++        .|    ..  +       ..-+.|+.+|-.+++.+..||.
T Consensus      1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred             ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence                11          1  1100101111111        01    00  0       0114578899999999999999


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++-+..++-+-.+.+++.+..+..+ .++++-+|=|---   ..||.+.+++
T Consensus      1147 ILLLDEATSALDseSErvVQeALd~a~~g-RT~IvIAHRLSTI---qnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1147 ILLLDEATSALDSESERVVQEALDRAMEG-RTTIVIAHRLSTI---QNADVIAVLK 1198 (1228)
T ss_pred             eeeeeccchhhhhhhHHHHHHHHHHhhcC-CcEEEEecchhhh---hcCCEEEEEE
Confidence              667888899999888888888887544 4555558877643   4689988875

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.05  E-value=1.1e-10  Score=106.69  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=91.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++++++|...   -..++++++..++|..++|+|+|||||||++++|.++     |...++.-.+            
T Consensus       335 I~~~~vsf~Y~~~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~  411 (529)
T TIGR02868       335 LELRDLSFGYPGS---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS  411 (529)
T ss_pred             EEEEEEEEecCCC---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence            4567777776421   1367889999999999999999999999999999986     4444443211            


Q ss_pred             --cccccc-------------CC--chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCChH-
Q psy17138        110 --GHRAYD-------------VG--TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       110 --~~~~~~-------------~~--~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~~-  153 (212)
                        .++.+.             +.  .+.....++..+.           +.       .-+.|+.+|-.+++.+.++|+ 
T Consensus       412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence              111111             10  0111111111111           10       013467889999999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecc
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV  190 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~  190 (212)
                       .++++++-+++...+.+.+.+.+.. +.+++++-+|-
T Consensus       492 liLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr  528 (529)
T TIGR02868       492 LLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH  528 (529)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence             5688899999999999998887763 34566665663

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PLN02348 phosphoribulokinase

Probab=99.05  E-value=2.1e-10  Score=100.23  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH-cCC--------------------eeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGA--------------------GLINCDQLGHRAYDVGTRGNQVVRELFGE  130 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~--------------------~vi~~D~i~~~~~~~~~~~~~~~~~~~g~  130 (212)
                      ...++.+|||.|+|||||||+++.|.. |+.                    .+++.|..-    ....    ......|.
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh----~~dr----~~r~~~g~  116 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH----SLDR----TGRKEKGV  116 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc----CCCh----hhHhhcCC
Confidence            346789999999999999999999985 431                    345555421    1110    11111122


Q ss_pred             ccCCCCCccchHhHHHHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc-cccccccCeEEEEEe
Q psy17138        131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFI  208 (212)
Q Consensus       131 ~~~~~~~~~~r~~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~  208 (212)
                      ..++. ...+...+.    ++-..+..-..+..|.+.+.......... .+.+++|+|+..++- ..++++||.+|+|++
T Consensus       117 t~ldP-~a~dfDll~----~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~  191 (395)
T PLN02348        117 TALDP-RANNFDLMY----EQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDI  191 (395)
T ss_pred             ccCCc-ccccHHHHH----HHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCccccccCcEEEEEEC
Confidence            22211 122222221    11122222233455555554432211111 457899999987763 468899999999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      |++
T Consensus       192 ~~d  194 (395)
T PLN02348        192 SDD  194 (395)
T ss_pred             CHH
Confidence            865

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=2.9e-10  Score=96.28  Aligned_cols=151  Identities=13%  Similarity=0.107  Sum_probs=99.3

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------  110 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++-          ...++...+.       
T Consensus        41 ~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~  116 (285)
T PRK14254         41 EARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV  116 (285)
T ss_pred             EEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence            45566665532    13678889999999999999999999999999999762          1122221110       


Q ss_pred             ---c-ccccCC------chh--------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138        111 ---H-RAYDVG------TRG--------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVF  149 (212)
Q Consensus       111 ---~-~~~~~~------~~~--------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf  149 (212)
                         + -.|.+.      ...                    ....++.+|..     ..      -+.|+.+|-.|+..+.
T Consensus       117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence               0 001110      000                    11223333321     01      1235667888888888


Q ss_pred             CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEE
Q psy17138        150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWV  205 (212)
Q Consensus       150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~  205 (212)
                      ++|+  +++++.+.+++.....+.+.++++..+ ..+++.+|.+.+.  ..+||++++
T Consensus       197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i--~~~~dri~v  251 (285)
T PRK14254        197 PDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQA--ARISDKTAV  251 (285)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH--HhhcCEEEE
Confidence            9988  568889999999999999999887543 5778889988764  468999754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.05  E-value=3.6e-10  Score=95.63  Aligned_cols=140  Identities=13%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Cc------ccccccc--C-CchhHH
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQ------LGHRAYD--V-GTRGNQ  122 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~------i~~~~~~--~-~~~~~~  122 (212)
                      ..++++++...+|.+++|+|+||||||||+++|+++     |...++.       +.      +...+..  . ......
T Consensus        51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~  130 (282)
T cd03291          51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYK  130 (282)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHH
Confidence            366778899999999999999999999999999986     3222211       10      0000000  0 000111


Q ss_pred             HHHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCC
Q psy17138        123 VVRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESH  181 (212)
Q Consensus       123 ~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~  181 (212)
                      .....++..                  ..-+.|+.+|-.++..+..+|+  +++++.+.++|.....+.+.+ ..+.. .
T Consensus       131 ~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~  209 (282)
T cd03291         131 SVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-N  209 (282)
T ss_pred             HHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-C
Confidence            112211210                  0113456678888888889988  568888999999988887654 44433 3


Q ss_pred             cEEEEEeccccccccccccCeEEEEE
Q psy17138        182 KVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       182 ~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+++.+|.+.+.   ..||+++++.
T Consensus       210 ~tIiiisH~~~~~---~~~d~i~~l~  232 (282)
T cd03291         210 KTRILVTSKMEHL---KKADKILILH  232 (282)
T ss_pred             CEEEEEeCChHHH---HhCCEEEEEE
Confidence            5777779988764   3699998875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.04  E-value=3e-10  Score=104.52  Aligned_cols=158  Identities=16%  Similarity=0.072  Sum_probs=103.2

Q ss_pred             cceechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         47 DKLSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ..+++++++|..... ....++++++..++|.+++|+|||||||||++++|.++     |...++...+.          
T Consensus       338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~  417 (555)
T TIGR01194       338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL  417 (555)
T ss_pred             EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence            456677777643211 12357889999999999999999999999999999986     43344432221          


Q ss_pred             -----cccc----------cCC--chhHHHHHHHhCCccC-------------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        111 -----HRAY----------DVG--TRGNQVVRELFGEDIA-------------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       111 -----~~~~----------~~~--~~~~~~~~~~~g~~~~-------------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                           ++.+          .+.  .......++..+..-.             -+.|+.+|-.+++.+..+|+  +++++
T Consensus       418 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~  497 (555)
T TIGR01194       418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW  497 (555)
T ss_pred             CcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                 1100          000  0111223333332211             13467788899999999998  66888


Q ss_pred             HhhhhHHHHHHHHHHHH-hhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIA-RLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~-~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++...+.+.+.+. ......+++++-+|-+..   ...||++++++
T Consensus       498 ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~---~~~~d~i~~l~  544 (555)
T TIGR01194       498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY---FELADQIIKLA  544 (555)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH---HHhCCEEEEEE
Confidence            99999999998876553 333345677777898743   35899999885

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.04  E-value=1.3e-10  Score=107.16  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=101.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..++..++++...  ....++++++..++|.+++|+|+||||||||+++|.++     |...++...+            
T Consensus       314 I~~~~v~~~y~~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  391 (569)
T PRK10789        314 LDVNIRQFTYPQT--DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL  391 (569)
T ss_pred             EEEEEEEEECCCC--CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence            4466666666421  12357888999999999999999999999999999986     3333332111            


Q ss_pred             ---ccccc-------------cCC--chhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAY-------------DVG--TRGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~-------------~~~--~~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+             .+.  ........+..+.           +..       -+.|+.+|-.+++.+.++|+
T Consensus       392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence               00100             010  0011111111111           100       13356778889999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.+.+.. ..+++++-+|-+..   ...||++++++
T Consensus       472 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~---~~~~d~i~~l~  523 (569)
T PRK10789        472 ILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA---LTEASEILVMQ  523 (569)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH---HHcCCEEEEEe
Confidence              5688999999999999999888764 45677777888744   35699998875

>PLN03211 ABC transporter G-25; Provisional

Probab=99.04  E-value=3.4e-10  Score=106.01  Aligned_cols=143  Identities=15%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc----c-cccc----------------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG----H-RAYD----------------  115 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~----~-~~~~----------------  115 (212)
                      ..++++++..++|++++|+||||||||||+++|+++..       ..+++..+.    + -.|.                
T Consensus        82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l  161 (659)
T PLN03211         82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL  161 (659)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHH
Confidence            46788899999999999999999999999999998622       223221110    0 0010                


Q ss_pred             --------CCc-------hhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        116 --------VGT-------RGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       116 --------~~~-------~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                              +..       ...+.+++.+|..-.            -+.|+.+|-.++..+..+|+  +++++.+.+++..
T Consensus       162 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~  241 (659)
T PLN03211        162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA  241 (659)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHH
Confidence                    000       012233444444211            13567788899999999998  5688999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.++++......+++.+|.+.. ...++||+++++.
T Consensus       242 ~~~l~~~L~~l~~~g~TvI~~sH~~~~-~i~~~~D~iilL~  281 (659)
T PLN03211        242 AYRLVLTLGSLAQKGKTIVTSMHQPSS-RVYQMFDSVLVLS  281 (659)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCCH-HHHHhhceEEEec
Confidence            999999998876446788888998762 1246899998874

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.03  E-value=2.9e-10  Score=104.38  Aligned_cols=156  Identities=17%  Similarity=0.076  Sum_probs=101.5

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~  112 (212)
                      ...+++.+++|..  . ...++++++..++|..++|+|+||||||||+++|.++     |...++.-.+.        +.
T Consensus       322 ~i~~~~v~f~y~~--~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  398 (547)
T PRK10522        322 TLELRNVTFAYQD--N-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL  398 (547)
T ss_pred             eEEEEEEEEEeCC--C-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence            3456666676641  1 1357888999999999999999999999999999986     33333322111        00


Q ss_pred             -cccCC-----------------chhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138        113 -AYDVG-----------------TRGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQ  160 (212)
Q Consensus       113 -~~~~~-----------------~~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~  160 (212)
                       .|.++                 .......++.+|....            -+.|+.+|-.+++.+.++|+  +++++++
T Consensus       399 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts  478 (547)
T PRK10522        399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA  478 (547)
T ss_pred             eEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence             01111                 0111222333332210            13467778889999999998  5688899


Q ss_pred             hhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        161 AIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       161 i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+++...+.+.+.+.+.. ...+.+++-+|-+..   ...||++++++
T Consensus       479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~---~~~~d~i~~l~  523 (547)
T PRK10522        479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY---FIHADRLLEMR  523 (547)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH---HHhCCEEEEEE
Confidence            999999888877775432 234567777887633   35799999886

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.03  E-value=3.8e-10  Score=94.09  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=99.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-  112 (212)
                      ..+.+.+++|...  ....++++++...+|.+++|+|+||||||||+++|+++     |...++...+.        +. 
T Consensus        20 i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i   97 (257)
T cd03288          20 IKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL   97 (257)
T ss_pred             EEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence            3455665655321  12356778899999999999999999999999999987     33333321110        00 


Q ss_pred             cccCC--------------------chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCChH-
Q psy17138        113 AYDVG--------------------TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       113 ~~~~~--------------------~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      .|.+.                    ...........+.           +.       .-+.|+.+|..++..+..+|+ 
T Consensus        98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  177 (257)
T cd03288          98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI  177 (257)
T ss_pred             EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            01000                    0001111111111           10       012356677888888888888 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++...++|.....+.+.+.+... ...+++.+|.+.+..   .||+++++.
T Consensus       178 lllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~---~~dri~~l~  228 (257)
T cd03288         178 LIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVSTIL---DADLVLVLS  228 (257)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHHHH---hCCEEEEEE
Confidence             55788888999999999888877643 467788899987752   499999885

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.03  E-value=9.9e-11  Score=110.28  Aligned_cols=155  Identities=18%  Similarity=0.160  Sum_probs=102.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+.+.+++|...  .-..++++++..++|..++|+|+||||||||+++|.++     |...+++-.+.           
T Consensus       456 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i  533 (694)
T TIGR01846       456 ITFENIRFRYAPD--SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM  533 (694)
T ss_pred             EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence            4566666666421  12357788999999999999999999999999999986     44444432221           


Q ss_pred             ----cccc-------------cCC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRAY-------------DVG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~~-------------~~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.+             .+.  .....         ..+..+  |.+..       -+.|+.+|-.+++.+.++|+
T Consensus       534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~  613 (694)
T TIGR01846       534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR  613 (694)
T ss_pred             eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence                1100             000  00011         111111  11110       13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.+.+.. ..+++++-+|-+...   ..||++++++
T Consensus       614 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---~~~d~ii~l~  665 (694)
T TIGR01846       614 ILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTV---RACDRIIVLE  665 (694)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHH---HhCCEEEEEe
Confidence              5688899999999999999888764 345677778887543   4699998885

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.03  E-value=1.5e-10  Score=107.11  Aligned_cols=154  Identities=17%  Similarity=0.136  Sum_probs=101.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++.+++|...   -..++++++..++|..++|+|+||||||||+++|.++     |...++...+            
T Consensus       335 i~~~~v~~~y~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  411 (585)
T TIGR01192       335 VEFRHITFEFANS---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI  411 (585)
T ss_pred             EEEEEEEEECCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            4566666666421   1357888999999999999999999999999999986     4334433211            


Q ss_pred             ---cccccc-------------CC--chhHHH---------HHHHh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAYD-------------VG--TRGNQV---------VRELF--GEDI-A------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~~-------------~~--~~~~~~---------~~~~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+.             +.  ......         .+...  |.+. .      -+.|+.+|-.+++.+..+|+
T Consensus       412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP  491 (585)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence               111110             10  000001         11111  1110 0      13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.+.+.. ..+++++-+|-+...   ..||++++++
T Consensus       492 ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~---~~~d~i~~l~  543 (585)
T TIGR01192       492 ILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTV---RNADLVLFLD  543 (585)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHH---HcCCEEEEEE
Confidence              5688899999999999998887764 356777779988553   4699999885

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.03  E-value=1.4e-10  Score=109.66  Aligned_cols=154  Identities=17%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+.+++++|.... ....++++++..++|+.++|+|+|||||||++++|.++     |...+|+..+            
T Consensus       479 I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  557 (711)
T TIGR00958       479 IEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV  557 (711)
T ss_pred             EEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence            45667777664211 12457889999999999999999999999999999987     4444443222            


Q ss_pred             ---ccccccCCc---------------hhHHHH---------HHHh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAYDVGT---------------RGNQVV---------RELF--GEDI-A------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~~~~~---------------~~~~~~---------~~~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+....               ......         ++.+  |.+. .      -+.|+.+|-.+++.+.++|+
T Consensus       558 ~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~  637 (711)
T TIGR00958       558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR  637 (711)
T ss_pred             eEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence               111111110               111111         1111  1110 0      13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        .++++++-+++...+.+.+ ...  ...+++++-+|-+..   -..||++++++
T Consensus       638 ILILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl~~---i~~aD~IivL~  687 (711)
T TIGR00958       638 VLILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRLST---VERADQILVLK  687 (711)
T ss_pred             EEEEEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccHHH---HHhCCEEEEEE
Confidence              5688888999988777766 222  345677777998754   35699999885

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.03  E-value=1.7e-10  Score=106.30  Aligned_cols=155  Identities=17%  Similarity=0.145  Sum_probs=100.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      -...++.+.|..   .-...+++++..++|+.+||+|+|||||||+++.|.++     |...+|.-++.           
T Consensus       329 I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I  405 (567)
T COG1132         329 IEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI  405 (567)
T ss_pred             EEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence            345555555532   22456778899999999999999999999999999986     54555432221           


Q ss_pred             ----ccc----------ccCCc------hh--------HHHHHHHh--CCccC-C------CCCccchHhHHHHhcCChH
Q psy17138        111 ----HRA----------YDVGT------RG--------NQVVRELF--GEDIA-L------PDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~----------~~~~~------~~--------~~~~~~~~--g~~~~-~------~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.          ...+.      ..        ....+..+  |.+.. .      +.|+.+|-.+++.+..+|.
T Consensus       406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~  485 (567)
T COG1132         406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence                111          11110      00        11112222  11111 1      2367889999999999997


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                        .+++.++-+++.....+.+.+.+.. +++++++=+|-+-.  + ..||++++++-
T Consensus       486 ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i-~~aD~IiVl~~  538 (567)
T COG1132         486 ILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--I-KNADRIIVLDN  538 (567)
T ss_pred             EEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--H-HhCCEEEEEEC
Confidence              5688888999999999988887654 33566666888743  2 34999999863

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=5.9e-10  Score=92.39  Aligned_cols=140  Identities=16%  Similarity=0.102  Sum_probs=92.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc----------c-ccccCCc-----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG----------H-RAYDVGT-----  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~----------~-~~~~~~~-----  118 (212)
                      .++++++...+|.+++|+|+||||||||+++|+++          |...++...+.          + -.|.+..     
T Consensus        18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14266         18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP   97 (250)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence            56778889999999999999999999999999975          22222221110          0 0111100     


Q ss_pred             -hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        119 -RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       119 -~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                       ..                      .....+.+|..     ..      -+.|+.+|-.++..+..+|+  +++++.+.+
T Consensus        98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gL  177 (250)
T PRK14266         98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL  177 (250)
T ss_pred             chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccC
Confidence             00                      01112222210     00      12356667788888888888  568889999


Q ss_pred             hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.....+.+.+.+... ...+++.+|.+.+.  ..+||++++++
T Consensus       178 D~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~--~~~~~~i~~l~  219 (250)
T PRK14266        178 DPISTTKIEDLIHKLKE-DYTIVIVTHNMQQA--TRVSKYTSFFL  219 (250)
T ss_pred             CHHHHHHHHHHHHHHhc-CCeEEEEECCHHHH--HhhcCEEEEEE
Confidence            99999999999987754 45777778888764  46889988764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.01  E-value=1.9e-10  Score=107.37  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc--ccc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR--AYD  115 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~--~~~  115 (212)
                      ..+.+.+++|..    ...++++++...+|.++||+|+||||||||+++|+++     |...+..+ .+   ...  .+.
T Consensus       320 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~  395 (635)
T PRK11147        320 FEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD  395 (635)
T ss_pred             EEEeeeEEEECC----eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence            456666666632    1356788999999999999999999999999999986     32222111 01   000  000


Q ss_pred             CCch-------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        116 VGTR-------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       116 ~~~~-------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      +...                   ....++..|+..  ..      -+.|+.+|..|+..+..+|.  +++++.+.+++..
T Consensus       396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~  475 (635)
T PRK11147        396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET  475 (635)
T ss_pred             CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            0000                   112233344431  11      13466778888888888888  6689999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.+.  + ..+++-+|.+...  ..+||++|++.
T Consensus       476 ~~~l~~~l~~~--~-~tvi~vSHd~~~~--~~~~d~i~~l~  511 (635)
T PRK11147        476 LELLEELLDSY--Q-GTVLLVSHDRQFV--DNTVTECWIFE  511 (635)
T ss_pred             HHHHHHHHHhC--C-CeEEEEECCHHHH--HHhcCEEEEEe
Confidence            99998888764  2 3677779998764  47899999885

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.01  E-value=4.7e-10  Score=86.63  Aligned_cols=53  Identities=34%  Similarity=0.613  Sum_probs=49.3

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL   59 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~   59 (212)
                      +||||+||..|+.+||+.|+++|++||++++++++. +     .++.++|||++|....
T Consensus        91 ~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~-~-----~~~~~~SSt~Ir~~~~  143 (153)
T PRK00777         91 AIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVL-A-----EDGKPISSTRIRRGEI  143 (153)
T ss_pred             EEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeee-c-----CCCCeeeHHHHHHhhh
Confidence            589999999999999999999999999999999999 6     5789999999998764

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.00  E-value=4.4e-10  Score=92.21  Aligned_cols=126  Identities=19%  Similarity=0.299  Sum_probs=67.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-----CC-ee-eeCCccccccccCCchhHHHHHHHhCCccC-CCCCccchHhH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GA-GL-INCDQLGHRAYDVGTRGNQVVRELFGEDIA-LPDGSIDRKKL  144 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~-~v-i~~D~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~r~~l  144 (212)
                      ..++.++||+|+||||||||++.|.++     |. .+ +..|..    +.+. .    .....|.... .....++...+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~----~~~~-~----~~~~~g~~~~~~~~~~~d~~~~  100 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF----HLDN-A----VLDAHGLRPRKGAPETFDVAGL  100 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc----cCCH-H----HHHhcccccccCCCCCCCHHHH
Confidence            556899999999999999999999864     21 23 555431    1111 0    1111111100 00112222222


Q ss_pred             HHHhcCChHHHHHH-HhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccc--cc---cccccCeEEEEEeCCC
Q psy17138        145 GAIVFSNKDEMNKL-NQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLS--AK---WQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       145 ~~~vf~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e--~~---~~~~~d~v~~v~~~~~  211 (212)
                      ...+    ..+..- +.+.+|.+.+...+.+....   ....++++|+.+++.  .+   +..+||.+|++++|.+
T Consensus       101 ~~~l----~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~  172 (229)
T PRK09270        101 AALL----RRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE  172 (229)
T ss_pred             HHHH----HHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence            1111    111100 13455555544443332221   246799999998863  23   3459999999999975

>PLN03073 ABC transporter F family; Provisional

Probab=98.99  E-value=6.1e-10  Score=105.11  Aligned_cols=153  Identities=16%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC---------Cc----
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC---------DQ----  108 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~---------D~----  108 (212)
                      ..+++.+++|..   ....++++++...+|.+++|+|+||||||||+++|+++     |...++.         +.    
T Consensus       509 L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l  585 (718)
T PLN03073        509 ISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL  585 (718)
T ss_pred             EEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccC
Confidence            345555555521   11246778899999999999999999999999999986     3222111         00    


Q ss_pred             -cccc-c-c----cCC--chhHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138        109 -LGHR-A-Y----DVG--TRGNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ  169 (212)
Q Consensus       109 -i~~~-~-~----~~~--~~~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~  169 (212)
                       +... . +    .+.  ......++..+|..  ..      -+.|+.+|..|+..+..+|.  +++++.+.+++.....
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~  665 (718)
T PLN03073        586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA  665 (718)
T ss_pred             CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence             0000 0 0    000  11223445555543  11      13467778889989999998  6689999999999888


Q ss_pred             HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+.+.  +. .+++-+|.+...  ..+||++|++.
T Consensus       666 l~~~L~~~--~g-tvIivSHd~~~i--~~~~drv~~l~  698 (718)
T PLN03073        666 LIQGLVLF--QG-GVLMVSHDEHLI--SGSVDELWVVS  698 (718)
T ss_pred             HHHHHHHc--CC-EEEEEECCHHHH--HHhCCEEEEEE
Confidence            87777653  23 677779998764  56899999885

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.99  E-value=8.3e-10  Score=88.26  Aligned_cols=126  Identities=11%  Similarity=0.076  Sum_probs=83.1

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----ccccC-------Cch------------
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----RAYDV-------GTR------------  119 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----~~~~~-------~~~------------  119 (212)
                      +++...+|++++|+|+||||||||+++|+++     |...++...+..     -.|.+       ...            
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~   98 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY   98 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence            6788899999999999999999999999987     434443322110     00111       000            


Q ss_pred             ----hHHHHHHHhCCcc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEE
Q psy17138        120 ----GNQVVRELFGEDI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVI  186 (212)
Q Consensus       120 ----~~~~~~~~~g~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvi  186 (212)
                          ......+.+|... .      -+.|+.+|-.++..+..+|+  +++++.+.++|...+.+.+.++........+++
T Consensus        99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  178 (195)
T PRK13541         99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL  178 (195)
T ss_pred             ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence                1122223334321 1      12356667788888888887  568888999999999999888654334567788


Q ss_pred             Eecccccc
Q psy17138        187 EAAVLLSA  194 (212)
Q Consensus       187 e~~~l~e~  194 (212)
                      .+|.+.+.
T Consensus       179 ~sh~~~~i  186 (195)
T PRK13541        179 SSHLESSI  186 (195)
T ss_pred             EeCCcccc
Confidence            78887654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.99  E-value=2.3e-10  Score=105.48  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=100.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      -.+++.++++.... ....++++++..++|+.++|+|+||||||||++.|.++     |...++...+            
T Consensus       338 i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  416 (576)
T TIGR02204       338 IEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM  416 (576)
T ss_pred             EEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence            34555556553211 12356778899999999999999999999999999987     3333433111            


Q ss_pred             ---ccccc-------------cCC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAY-------------DVG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~-------------~~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+             .+.  .....         ..+..+  |.+..       -+.|+.+|-.+++.+..+|+
T Consensus       417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~  496 (576)
T TIGR02204       417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP  496 (576)
T ss_pred             eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence               01110             000  01111         112222  11110       12367788899999999988


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+-+++...+.+.+.+++.. ..+++++-+|-+..   ...||+++.++
T Consensus       497 ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~---~~~~d~vi~l~  548 (576)
T TIGR02204       497 ILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT---VLKADRIVVMD  548 (576)
T ss_pred             eEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH---HHhCCEEEEEE
Confidence              5688899999999998988887764 34677777888743   36799998875

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK05439 pantothenate kinase; Provisional

Probab=98.98  E-value=3.1e-10  Score=96.87  Aligned_cols=127  Identities=19%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchh-HHHHHHHhCCccCCCCCccchH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRG-NQVVRELFGEDIALPDGSIDRK  142 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~r~  142 (212)
                      ....+++|||+|++||||||+++.|..+ +       ..++..|..    |.+.... ..+....+|     ....+|..
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF----y~~~~~l~~~~l~~~kg-----~Pes~D~~  152 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF----LYPNAVLEERGLMKRKG-----FPESYDMR  152 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc----ccCHHHHhhhhccccCC-----CcccccHH
Confidence            3567899999999999999999999853 1       234555532    2222110 001111112     12245554


Q ss_pred             hHHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh-c--CCCcEEEEEeccccc-ccc------ccccCeEEEEEeCCC
Q psy17138        143 KLGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL-S--ESHKVIVIEAAVLLS-AKW------QDQVHEIWVTFIPEQ  211 (212)
Q Consensus       143 ~l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~-~--~~~~~vvie~~~l~e-~~~------~~~~d~v~~v~~~~~  211 (212)
                      .+...+    ..+..-. .+..|.+.+...+++... .  .+..++++||.+++. ...      ++++|..|+|++|.+
T Consensus       153 ~l~~~L----~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~  228 (311)
T PRK05439        153 ALLRFL----SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADED  228 (311)
T ss_pred             HHHHHH----HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHH
Confidence            443222    1111112 255566666666554221 1  467899999987663 222      789999999999975

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.98  E-value=1.2e-09  Score=87.79  Aligned_cols=141  Identities=16%  Similarity=0.090  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-C----CeeeeCCcc-----------------------------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-G----AGLINCDQL-----------------------------  109 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g----~~vi~~D~i-----------------------------  109 (212)
                      +-++++++..+.|++.+|+|||||||||++|.|++. .    -..++.-.+                             
T Consensus        15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e   94 (259)
T COG4559          15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE   94 (259)
T ss_pred             eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence            346778899999999999999999999999999963 1    111111100                             


Q ss_pred             ----ccccccCCch--h----HHHHHHHh------CCccC-CCCCccchHhHHHHhcCC--hH------HHHHHHhhhhH
Q psy17138        110 ----GHRAYDVGTR--G----NQVVRELF------GEDIA-LPDGSIDRKKLGAIVFSN--KD------EMNKLNQAIWP  164 (212)
Q Consensus       110 ----~~~~~~~~~~--~----~~~~~~~~------g~~~~-~~~~~~~r~~l~~~vf~~--~~------~~~~~~~i~~p  164 (212)
                          ++-.+..+..  .    .+......      +.++. -+.|..+|..+++.+-|-  |.      +++++.+-++.
T Consensus        95 VV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi  174 (259)
T COG4559          95 VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI  174 (259)
T ss_pred             HHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccch
Confidence                0000100000  0    11111111      11111 135667788887665542  11      45667777777


Q ss_pred             HHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        165 LILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       165 ~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .-.+.+.+..+++. .+. .|+.--|.|.-+  ..+||+++.+.
T Consensus       175 ~HQ~~tl~laR~la~~g~-~V~~VLHDLNLA--A~YaDrivll~  215 (259)
T COG4559         175 AHQHHTLRLARQLAREGG-AVLAVLHDLNLA--AQYADRIVLLH  215 (259)
T ss_pred             HHHHHHHHHHHHHHhcCC-cEEEEEccchHH--HHhhheeeeee
Confidence            77777777777665 443 444447887755  36999998763

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.98  E-value=7.5e-10  Score=101.92  Aligned_cols=152  Identities=15%  Similarity=0.106  Sum_probs=102.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc--ccc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR--AYD  115 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~--~~~  115 (212)
                      ..+++.++.|..    ...++++++...+|.++||+|+||||||||+++|+++     |...+..+ .+   ..+  .+.
T Consensus       325 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~  400 (556)
T PRK11819        325 IEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALD  400 (556)
T ss_pred             EEEEeEEEEECC----eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcC
Confidence            445565555531    1366788999999999999999999999999999986     32222211 01   111  000


Q ss_pred             CC-------------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        116 VG-------------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       116 ~~-------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      +.                   .......+..+|..  ..+      +.|+.+|..++..+..+|+  +++++.+.+++..
T Consensus       401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  480 (556)
T PRK11819        401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET  480 (556)
T ss_pred             CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            00                   00112344555542  111      2356778889989989998  6689999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.+..  . .+++-+|.+.+.  ..+||+++++.
T Consensus       481 ~~~l~~~l~~~~--~-tvi~vtHd~~~~--~~~~d~i~~l~  516 (556)
T PRK11819        481 LRALEEALLEFP--G-CAVVISHDRWFL--DRIATHILAFE  516 (556)
T ss_pred             HHHHHHHHHhCC--C-eEEEEECCHHHH--HHhCCEEEEEE
Confidence            999999998752  3 566779998764  47899999885

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.98  E-value=7.3e-10  Score=101.92  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc--cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA--YD  115 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~--~~  115 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+|+||||||||+++|+++     |...++.+ .+   ..+.  +.
T Consensus       323 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~  398 (552)
T TIGR03719       323 IEAENLSKGFGD----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALD  398 (552)
T ss_pred             EEEeeEEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence            345565555531    1367778999999999999999999999999999986     32222111 01   1110  00


Q ss_pred             CC-------------------chhHHHHHHHhCCcc--CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        116 VG-------------------TRGNQVVRELFGEDI--AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       116 ~~-------------------~~~~~~~~~~~g~~~--~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      +.                   ......++..+|..-  .+      +.|+.+|..++..+..+|+  +++++.+.+++..
T Consensus       399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~  478 (552)
T TIGR03719       399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET  478 (552)
T ss_pred             CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence            00                   001123455555421  11      2356778889989999998  6689999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.+..  . .+++-+|.+...  ..+||++|+++
T Consensus       479 ~~~l~~~l~~~~--~-~viivsHd~~~~--~~~~d~i~~l~  514 (552)
T TIGR03719       479 LRALEEALLEFA--G-CAVVISHDRWFL--DRIATHILAFE  514 (552)
T ss_pred             HHHHHHHHHHCC--C-eEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999999998763  2 577779998764  46899999986

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03073 ABC transporter F family; Provisional

Probab=98.97  E-value=4.6e-10  Score=105.90  Aligned_cols=67  Identities=12%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|+..|..|+..++.+|+  +++++.+.+++.....+.+.+.+.   ...+++-+|.+..  +..+||+++.+.
T Consensus       347 gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~--l~~~~d~i~~l~  415 (718)
T PLN03073        347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREF--LNTVVTDILHLH  415 (718)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH--HHHhCCEEEEEE
Confidence            356678889999999998  568999999999999999998875   2467777898765  457899999885

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.97  E-value=9.1e-10  Score=110.82  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .|+.+|-.|++.+..+|.  +++++.+.+++.....+.+.+++.. ....++++-+|.+...   ..||++++++-
T Consensus       582 GGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i---~~aD~Iivl~~  654 (1466)
T PTZ00265        582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI---RYANTIFVLSN  654 (1466)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH---HhCCEEEEEeC
Confidence            467788899999999998  5688999999999999999998875 2356777779988553   58999999864

>KOG0059|consensus

Probab=98.97  E-value=8.1e-10  Score=106.57  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-cccCCch----------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-AYDVGTR----------  119 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~~~~~~~----------  119 (212)
                      +.+.+++..++++++|+.|+|||||||+++++.|.     |...+.+-.+.         +. -|-|+..          
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE  659 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE  659 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence            77889999999999999999999999999999986     55666332221         11 1333311          


Q ss_pred             ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                                        ..+..++.+|..-.       -+.|...|-.++-.+..+|.  .++++...++|..++.+|+
T Consensus       660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~  739 (885)
T KOG0059|consen  660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD  739 (885)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence                              12233333332111       13456666677777888888  6788999999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|.+.+++.+.+++.+|.|.|++  .+|||+.++.
T Consensus       740 ii~~~~k~g~aiiLTSHsMeE~E--aLCtR~aImv  772 (885)
T KOG0059|consen  740 IIARLRKNGKAIILTSHSMEEAE--ALCTRTAIMV  772 (885)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHH--HHhhhhheee
Confidence            99998855559999999999985  6999987653

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.96  E-value=9.4e-10  Score=90.16  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             CccchHhHHHHhcCCh--H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        137 GSIDRKKLGAIVFSNK--D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       137 ~~~~r~~l~~~vf~~~--~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      |+.+|-.++..+..+|  +  +++++.+.+++.....+.+.+.++......+++-+|.+.+.   .+||+++++
T Consensus       141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~---~~~d~i~~l  211 (226)
T cd03270         141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI---RAADHVIDI  211 (226)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH---HhCCEEEEe
Confidence            4566778888887776  3  55788889999999999988887653345677778988653   489999988

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.96  E-value=6.5e-10  Score=104.05  Aligned_cols=156  Identities=13%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------------  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------------  111 (212)
                      +++.+++|.........+++++++..+|++++|+|+||||||||+++|+++     |...++...+..            
T Consensus         7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   86 (648)
T PRK10535          7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRRE   86 (648)
T ss_pred             EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence            455555553211112356778899999999999999999999999999987     333444322210            


Q ss_pred             c-cccCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        112 R-AYDVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~-~~~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      . .|.++       ...                     ....++.+|..-.       -+.|+.+|-.|+..+..+|+  
T Consensus        87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lL  166 (648)
T PRK10535         87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI  166 (648)
T ss_pred             cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            0 01110       000                     1112223332211       12356677888888889998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++...+++...+.+.+.++++......+++.+|.+...   ..||++++++
T Consensus       167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~---~~~d~i~~l~  217 (648)
T PRK10535        167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA---AQAERVIEIR  217 (648)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH---HhCCEEEEEE
Confidence            56888999999999999999987754456778889998754   4699999886

>PLN03232 ABC transporter C family member; Provisional

Probab=98.95  E-value=3.3e-10  Score=114.40  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++++++|+..  .-..++++++..++|+.+||+|++||||||++++|.++     |...+|+.++.           
T Consensus      1235 I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1235 IKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             EEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence            4577777877421  12367889999999999999999999999999999987     55555543331           


Q ss_pred             --------------cccccCCch----hHHHH---------HHHh--CCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        111 --------------HRAYDVGTR----GNQVV---------RELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 --------------~~~~~~~~~----~~~~~---------~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                                    ++++.+...    .....         +...  |.+..       -+.|+.+|-.|++.+.++|+ 
T Consensus      1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232       1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred             EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence                          111111110    00111         1111  11100       12367788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       ++++.++-+++...+.+++.+++.. +++++++-+|-+...   ..||++++++
T Consensus      1393 LILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti---~~~DrIlVL~ 1443 (1495)
T PLN03232       1393 LVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTI---IDCDKILVLS 1443 (1495)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence             5688888999999999998888764 346667768888442   4599999986

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.3e-09  Score=86.04  Aligned_cols=127  Identities=17%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CC------eeeeCCcccc---------ccccCCc----------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GA------GLINCDQLGH---------RAYDVGT----------  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~------~vi~~D~i~~---------~~~~~~~----------  118 (212)
                      -++++++....|++.+|.||||||||||+..|++. +|      ..+++..|..         .++...+          
T Consensus        19 ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~   98 (251)
T COG0396          19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTN   98 (251)
T ss_pred             hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeH
Confidence            45667888999999999999999999999999986 33      3444433310         0000000          


Q ss_pred             -------------------h---hHHHHHHHhCCcc--C----C---CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        119 -------------------R---GNQVVRELFGEDI--A----L---PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       119 -------------------~---~~~~~~~~~g~~~--~----~---~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                                         .   ......+..+.+-  +    +   +.|...|..+.|++..+|.  .++++.+.++-.
T Consensus        99 ~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDId  178 (251)
T COG0396          99 SDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID  178 (251)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHH
Confidence                               0   0111112222111  0    1   3467778899999999998  678888889888


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccc
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVL  191 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l  191 (212)
                      ..+.+.+.+..++....-+++=+|+-
T Consensus       179 alk~V~~~i~~lr~~~~~~liITHy~  204 (251)
T COG0396         179 ALKIVAEGINALREEGRGVLIITHYQ  204 (251)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEecHH
Confidence            88888888888874444444448873

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.95  E-value=9.1e-10  Score=100.30  Aligned_cols=151  Identities=15%  Similarity=0.058  Sum_probs=94.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-ccc---cccccCCc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QLG---HRAYDVGT  118 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i~---~~~~~~~~  118 (212)
                      .+++.++.|+    ...-++++++....|..+||+|.||||||||+|+|++.     |-...... .++   .+......
T Consensus         5 ~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~   80 (530)
T COG0488           5 TLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE   80 (530)
T ss_pred             EEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence            3555566663    12445778889999999999999999999999999974     21111111 111   00000000


Q ss_pred             -hh-----------------H----------------------------------HHHHHHhCCccC------CCCCccc
Q psy17138        119 -RG-----------------N----------------------------------QVVRELFGEDIA------LPDGSID  140 (212)
Q Consensus       119 -~~-----------------~----------------------------------~~~~~~~g~~~~------~~~~~~~  140 (212)
                       ..                 +                                  ..+..-+|..-.      -+.|...
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence             00                 0                                  011111221111      0234556


Q ss_pred             hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |..|++.+|++|+  ++++++|-++-.....+.+.+.+.  .. .+++-+|.=.-  +.+.|+.+|-++
T Consensus       161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~F--Ld~V~t~I~~ld  224 (530)
T COG0488         161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYF--LDNVATHILELD  224 (530)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHH--HHHHhhheEEec
Confidence            8899999999999  668999999999999999999864  33 56665886443  235788887765

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.95  E-value=3.8e-09  Score=96.28  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=99.3

Q ss_pred             ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CC---------eeeeCCcc
Q psy17138         44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GA---------GLINCDQL  109 (212)
Q Consensus        44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~---------~vi~~D~i  109 (212)
                      .....+.+..+.|...   .....++++...+|..|||+||||+|||||+|+|.+.     |.         .+++-+  
T Consensus       319 ~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~--  393 (530)
T COG0488         319 KLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH--  393 (530)
T ss_pred             CeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh--
Confidence            3444566666666322   2345668899999999999999999999999999652     11         112111  


Q ss_pred             ccccc------------cCC--chhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        110 GHRAY------------DVG--TRGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       110 ~~~~~------------~~~--~~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                      ..++.            .+.  .......+..|+-..-        -+.|+..|..|+..+.+.|+  ++++++|-++..
T Consensus       394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~  473 (530)
T COG0488         394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE  473 (530)
T ss_pred             hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHH
Confidence            00100            000  1122333344443210        14567788899989999888  668999999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ....+.+.+...  .+ .|++.+|.-.-.  ...|+++|.+.
T Consensus       474 s~~aLe~aL~~f--~G-tvl~VSHDr~Fl--~~va~~i~~~~  510 (530)
T COG0488         474 SLEALEEALLDF--EG-TVLLVSHDRYFL--DRVATRIWLVE  510 (530)
T ss_pred             HHHHHHHHHHhC--CC-eEEEEeCCHHHH--HhhcceEEEEc
Confidence            999998888774  34 444448875532  46889998875

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.94  E-value=4.6e-11  Score=95.57  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=25.0

Q ss_pred             CCCcEEEEEecccc-ccccccccCeEEEEEeCCC
Q psy17138        179 ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       179 ~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+.+++++||.+++ ...+++++|..|+|++|.+
T Consensus       105 ~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~  138 (194)
T PF00485_consen  105 SPSDIVIVEGIYALYDEELRDLFDLKIFLDADED  138 (194)
T ss_dssp             ES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HH
T ss_pred             CCCCEEEEcccceeeeeeecccceeEEEecccHH
Confidence            45689999998865 4568899999999999864

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN03130 ABC transporter C family member; Provisional

Probab=98.94  E-value=4.3e-10  Score=114.06  Aligned_cols=156  Identities=18%  Similarity=0.106  Sum_probs=106.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ...+++++++|+..  .-..++++++..++|+.+||+|++||||||++++|.++     |...+|+-++.          
T Consensus      1237 ~I~f~nVsf~Y~~~--~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130       1237 SIKFEDVVLRYRPE--LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred             cEEEEEEEEEeCCC--CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence            35677777877421  11357889999999999999999999999999999987     55566653331          


Q ss_pred             -----cc----------cccCCch----hHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        111 -----HR----------AYDVGTR----GNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 -----~~----------~~~~~~~----~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                           ++          +..++..    ...         ..+...  |.+..       -+.|+.+|-.|++.+..+|.
T Consensus      1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130       1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred             cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence                 11          1111110    001         111111  11110       13467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++.++-+++...+.+++.|++.. .++++++-+|-+.-.   ..||++++++
T Consensus      1395 ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI---~~~DrIlVLd 1446 (1622)
T PLN03130       1395 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---IDCDRILVLD 1446 (1622)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHH---HhCCEEEEEE
Confidence              5678888899999999998888764 356777779988653   3599999986

>PRK01184 hypothetical protein; Provisional

Probab=98.94  E-value=2.5e-09  Score=84.59  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i  109 (212)
                      +.+|+|+|++||||||+++++..+|+++++++++
T Consensus         1 ~~~i~l~G~~GsGKsT~a~~~~~~g~~~i~~~d~   34 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDV   34 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHcCCcEEEhhHH
Confidence            4589999999999999999888899999997543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.93  E-value=4.7e-09  Score=85.89  Aligned_cols=153  Identities=13%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee------e-----eCCc---c-----
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL------I-----NCDQ---L-----  109 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v------i-----~~D~---i-----  109 (212)
                      +.++++++...    +.+.+++-+.+.|+-++|+|+||||||||++++++...+-      +     ..|.   +     
T Consensus        34 l~~v~v~r~gk----~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG  109 (257)
T COG1119          34 LKNVSVRRNGK----KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG  109 (257)
T ss_pred             ecceEEEECCE----eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence            45555555322    5567788899999999999999999999999999742210      0     0111   0     


Q ss_pred             ---------------ccc-----------ccc-CCc----hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCC
Q psy17138        110 ---------------GHR-----------AYD-VGT----RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       110 ---------------~~~-----------~~~-~~~----~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~  151 (212)
                                     .++           +|. +.+    .....+.+.+|..-+.       +.|+..|..+++.+..+
T Consensus       110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~  189 (257)
T COG1119         110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD  189 (257)
T ss_pred             ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence                           111           121 111    1233455666654321       23666788899999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |.  .++++.+.++...++.+.+++.+..  .+...+++-+|...|.  ...++.+..+.
T Consensus       190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi--~~~~th~lll~  247 (257)
T COG1119         190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI--PPCFTHRLLLK  247 (257)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc--ccccceEEEee
Confidence            99  4688899999999999999988776  3456666669988774  46677666554

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.93  E-value=9.6e-10  Score=94.82  Aligned_cols=70  Identities=13%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|+.+|-.|+..+..+|+  +++++.+.+++..+..+.+.+.+.. .....+++.+|.+.++  ..+||+++++.
T Consensus       103 gGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~--~~~~d~i~vl~  175 (325)
T TIGR01187       103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA--MTMSDRIAIMR  175 (325)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            356678889999999988  5688999999999999999988775 3356777779998774  57899999875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.92  E-value=9.3e-10  Score=87.11  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc------CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~  151 (212)
                      +|+|.|++||||||+++.|...      .+.+++.|..-+....+        ....|.  .+....++...+.+.+   
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~--------~~~~g~--~d~~~~~d~~~l~~~l---   67 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTP--------RDEDGN--YDFESILDLDLLNKNL---   67 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccc--------cccCCC--CCCCccccHHHHHHHH---
Confidence            5899999999999999999854      34566666543321000        001111  0111112332222211   


Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHh--hc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        152 KDEMNKLNQAIWPLILAQVKEEIAR--LS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       152 ~~~~~~~~~i~~p~~~~~~~~~i~~--~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                       ..+..-..+..|.+......+...  .. .+..++++|+.+++...+++++|..++|++|.+
T Consensus        68 -~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~  129 (179)
T cd02028          68 -HDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVH  129 (179)
T ss_pred             -HHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCcc
Confidence             001111122334433333222211  11 466899999999998788899999999999976

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.92  E-value=1e-09  Score=91.09  Aligned_cols=126  Identities=20%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHHHHHHhCCccCCC---CCcc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP---DGSI  139 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~  139 (212)
                      .....+++|||.|+.|+||||+++.|+.+-        ...+-+|-.         ......++.-|  ....   ...+
T Consensus        77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF---------hy~n~~L~~~g--lm~rKGfPeSy  145 (283)
T COG1072          77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF---------HYPNAVLDERG--LMARKGFPESY  145 (283)
T ss_pred             CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc---------ccCHhHhhhcc--ccccCCCCccc
Confidence            347789999999999999999999998651        122223211         00111222111  1111   1256


Q ss_pred             chHhHHHHhcCChHHHH-HHHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccccc-----cccccCeEEEEEeCC
Q psy17138        140 DRKKLGAIVFSNKDEMN-KLNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLSAK-----WQDQVHEIWVTFIPE  210 (212)
Q Consensus       140 ~r~~l~~~vf~~~~~~~-~~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e~~-----~~~~~d~v~~v~~~~  210 (212)
                      |...+.+++    ..++ ...++..|.+.+.+.+.+....   ...+++++||.+++..+     +.++||..++||+|+
T Consensus       146 D~~~ll~fl----~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~  221 (283)
T COG1072         146 DVAALLRFL----SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADE  221 (283)
T ss_pred             cHHHHHHHH----HHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCH
Confidence            666555444    2222 2345778999999988885544   56789999999999643     466999999999986


Q ss_pred             C
Q psy17138        211 Q  211 (212)
Q Consensus       211 ~  211 (212)
                      +
T Consensus       222 ~  222 (283)
T COG1072         222 E  222 (283)
T ss_pred             H
Confidence            4

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.91  E-value=4.7e-10  Score=113.49  Aligned_cols=156  Identities=15%  Similarity=0.039  Sum_probs=105.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      .....+++++|+...  -..++++++..++|+.+||+|++|||||||++.|.++     |...+|+-++.          
T Consensus      1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred             cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence            356677777775321  1467889999999999999999999999999999986     55555543321          


Q ss_pred             ---------------cccccCCc----hhHHHHHH---------Hh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138        111 ---------------HRAYDVGT----RGNQVVRE---------LF--GEDIA-------LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ---------------~~~~~~~~----~~~~~~~~---------~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~  153 (212)
                                     +++..+..    ......++         .+  |.+..       -+.|+.+|-.|++.+..+|.
T Consensus      1362 i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957      1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred             CeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence                           11112111    00111111         11  11100       02367788899999999988


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++.++-+++.....+.+.|++.. .++++++-+|-+...   ..||++++++
T Consensus      1442 ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti---~~~DrIlVld 1493 (1522)
T TIGR00957      1442 ILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTI---MDYTRVIVLD 1493 (1522)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH---HhCCEEEEEE
Confidence              5688888999999999998887764 345666668887542   4689999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=98.91  E-value=7.1e-10  Score=112.25  Aligned_cols=155  Identities=19%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++++++|+..  .-..++++++...+|+.|||+|++|||||||++.|.++     |...+|+-++.           
T Consensus      1309 I~f~nVsf~Y~~~--~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243       1309 LVFEGVQMRYREG--LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred             EEEEEEEEEeCCC--CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence            4566777777421  11357889999999999999999999999999999987     55556543331           


Q ss_pred             ----c----------ccccCCc----hhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCC-hH
Q psy17138        111 ----H----------RAYDVGT----RGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSN-KD  153 (212)
Q Consensus       111 ----~----------~~~~~~~----~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~-~~  153 (212)
                          +          ++..+..    ......++..|.           +..       -+.|+.+|-.|++.+.++ +.
T Consensus      1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence                1          1111110    011111111111           100       134677888999999985 55


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++.++-+++...+.+++.+++... .+++++-+|-+.-   -..||++++++
T Consensus      1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~t---i~~~DrIlVLd 1518 (1560)
T PTZ00243       1467 FILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHT---VAQYDKIIVMD 1518 (1560)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHH---HHhCCEEEEEE
Confidence              56788888999999999988887643 4566666888743   25699999986

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.91  E-value=1.8e-09  Score=101.32  Aligned_cols=153  Identities=12%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-Ccc---ccc-----
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-DQL---GHR-----  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-D~i---~~~-----  112 (212)
                      ..+.+.++++.. +.  ..++++++..++|++++|+|+||||||||+++|+++     |...++. ..+   .++     
T Consensus       452 i~~~nv~~~~~~-~~--~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       452 IKFENIPLVTPN-GD--VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             EEEEeeEEECCC-CC--eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence            445565555531 11  356778999999999999999999999999999987     3211110 000   011     


Q ss_pred             ------ccc---------CC--chhHHHHHHHhCCcc----------------CCCCCccchHhHHHHhcCChH--HHHH
Q psy17138        113 ------AYD---------VG--TRGNQVVRELFGEDI----------------ALPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       113 ------~~~---------~~--~~~~~~~~~~~g~~~----------------~~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                            +..         ++  .......++.+|...                .-+.|+.+|-.+++.+.++|+  ++++
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE  608 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE  608 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence                  111         00  111122333333211                113467788899999999998  5688


Q ss_pred             HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +.+.+++...+.+.+.+++.   ...+++-+|.+...   .+||++++++-
T Consensus       609 pts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~---~~~d~il~l~~  653 (659)
T TIGR00954       609 CTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLW---KYHEYLLYMDG  653 (659)
T ss_pred             CccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHH---HhCCEEEEEeC
Confidence            99999999999888877652   45677778987653   67999998863

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.90  E-value=8.7e-10  Score=110.98  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=56.3

Q ss_pred             CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +.|+.+|-.|++.+..+|.  ++++.++.+++...+.+.+.+.+.. ...+++++-+|-+..   -..||++++++-
T Consensus      1360 SGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst---i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265       1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS---IKRSDKIVVFNN 1433 (1466)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH---HHhCCEEEEEeC
Confidence            3467889999999999998  5688889999999999988887764 235677777888844   257999999863

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.90  E-value=6.5e-09  Score=79.98  Aligned_cols=98  Identities=20%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN  156 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~  156 (212)
                      +|.|.|++||||||+++.|+ .+|.+++++           +..+.++++..|.++..    ++     .+         
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsa-----------G~iFR~~A~e~gmsl~e----f~-----~~---------   52 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSA-----------GTIFREMARERGMSLEE----FS-----RY---------   52 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeec-----------cHHHHHHHHHcCCCHHH----HH-----HH---------
Confidence            68999999999999999998 478888775           34566777777755411    11     11         


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccc--cccCeEEEEEeCCC
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ--DQVHEIWVTFIPEQ  211 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~--~~~d~v~~v~~~~~  211 (212)
                         +=-+|.++.++..+..+... ..-+++|+++   ++|-  ...|..+++.+|.+
T Consensus        53 ---AE~~p~iD~~iD~rq~e~a~-~~nvVlegrL---A~Wi~k~~adlkI~L~Apl~  102 (179)
T COG1102          53 ---AEEDPEIDKEIDRRQKELAK-EGNVVLEGRL---AGWIVREYADLKIWLKAPLE  102 (179)
T ss_pred             ---HhcCchhhHHHHHHHHHHHH-cCCeEEhhhh---HHHHhccccceEEEEeCcHH
Confidence               12346666777666655543 5678899998   5553  36899999999864

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.9e-09  Score=81.81  Aligned_cols=129  Identities=15%  Similarity=0.098  Sum_probs=84.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cccc------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GHRA------------  113 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~~~------------  113 (212)
                      -..+.++....|+.+-|+||||||||||+|+|+++     |-..++...+              +|..            
T Consensus        17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL   96 (209)
T COG4133          17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL   96 (209)
T ss_pred             eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence            34557788999999999999999999999999997     3334443322              1111            


Q ss_pred             ------ccC-CchhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138        114 ------YDV-GTRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL  177 (212)
Q Consensus       114 ------~~~-~~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~  177 (212)
                            +.. +.....+.+..+|...+.       +.|+..|..|++.......  +++++..-+++.-...+...+...
T Consensus        97 ~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H  176 (209)
T COG4133          97 HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH  176 (209)
T ss_pred             HHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH
Confidence                  000 011122333444432221       2355567788876666554  567788888888888888888776


Q ss_pred             cCCCcEEEEEeccccc
Q psy17138        178 SESHKVIVIEAAVLLS  193 (212)
Q Consensus       178 ~~~~~~vvie~~~l~e  193 (212)
                      .....+|++.+|.-+-
T Consensus       177 ~~~GGiVllttHq~l~  192 (209)
T COG4133         177 AAQGGIVLLTTHQPLP  192 (209)
T ss_pred             hcCCCEEEEecCCccC
Confidence            6566799999997653

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.88  E-value=5e-09  Score=97.60  Aligned_cols=143  Identities=14%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCcccc------ccccCCc-----------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLGH------RAYDVGT-----------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~~------~~~~~~~-----------  118 (212)
                      ..+++++...++|++++|+||||||||||+++|+++-.        ..+++..+..      -.|.++.           
T Consensus        39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e  118 (617)
T TIGR00955        39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE  118 (617)
T ss_pred             ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence            46788899999999999999999999999999997521        2233322110      0010000           


Q ss_pred             --------------------hhHHHHHHHhCCcc-----C--------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        119 --------------------RGNQVVRELFGEDI-----A--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       119 --------------------~~~~~~~~~~g~~~-----~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                                          ...+.+++.+|..-     .        -+.|+.+|-.++..+..+|+  +++++.+.++
T Consensus       119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD  198 (617)
T TIGR00955       119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD  198 (617)
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence                                01233444444311     0        13467778899999999998  5688999999


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.....+.+.+++.......+++.+|.... ...++||+++++.
T Consensus       199 ~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~-~i~~~~D~i~ll~  241 (617)
T TIGR00955       199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSS-ELFELFDKIILMA  241 (617)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCCCH-HHHHHhceEEEee
Confidence            999999999988876446788888998752 1356899998875

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.88  E-value=1.8e-09  Score=98.51  Aligned_cols=122  Identities=14%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFS  150 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~  150 (212)
                      ..+..+|||.|||||||||+++.|.++  ...++..|...     ..    ..   ..+. .++....++...+.    +
T Consensus        62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~-----~~----~~---~i~~-nfD~P~a~D~d~L~----e  124 (656)
T PLN02318         62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN-----DS----SR---IIDG-NFDDPRLTDYDTLL----D  124 (656)
T ss_pred             CCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee-----cc----hh---hhCc-cCCChhhcchhHHH----H
Confidence            445789999999999999999999975  24456655421     10    00   0010 01100111111111    1


Q ss_pred             ChHHHHHHHhhhhHHHHHHHHHHHHh--hc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        151 NKDEMNKLNQAIWPLILAQVKEEIAR--LS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       151 ~~~~~~~~~~i~~p~~~~~~~~~i~~--~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +-..+..-..+..|.+......+...  .. ....++++||.+++...+++++|..|||++|.+
T Consensus       125 nL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD  188 (656)
T PLN02318        125 NIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH  188 (656)
T ss_pred             HHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence            11111111223456555554433321  11 467899999999998889999999999998754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.88  E-value=4.6e-09  Score=81.27  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee-----eCCcc---------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI-----NCDQL---------  109 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi-----~~D~i---------  109 (212)
                      +.+.++.|+..    .++-++.+..+.|..+.+.||||+|||||+|.|+-|     |.-.+     |....         
T Consensus         5 v~~in~~yg~~----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           5 LNGINCFYGAH----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             Ecccccccccc----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            44455555432    345567788899999999999999999999999855     22111     11100         


Q ss_pred             cccc------c--cCCchh----------------------HHHHHH---------HhCCccCCCCCccchHhHHHHhcC
Q psy17138        110 GHRA------Y--DVGTRG----------------------NQVVRE---------LFGEDIALPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       110 ~~~~------~--~~~~~~----------------------~~~~~~---------~~g~~~~~~~~~~~r~~l~~~vf~  150 (212)
                      .++.      |  .|.-..                      -.++.+         .|...  -+.|+.+|..+++.+.-
T Consensus        81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plh--lsggqqqrvaiaralmm  158 (242)
T COG4161          81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH--LSGGQQQRVAIARALMM  158 (242)
T ss_pred             HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCcee--cccchhhhHHHHHHHhc
Confidence            0000      0  111000                      001111         11111  14577789999998888


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .|+  +++++++.++|++...+-+.|+++. .+..-|++ +|-.--+  ++.+.+|+++
T Consensus       159 kpqvllfdeptaaldpeitaqvv~iikel~~tgitqviv-thev~va--~k~as~vvym  214 (242)
T COG4161         159 EPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIV-THEVEVA--RKTASRVVYM  214 (242)
T ss_pred             CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEE-EeehhHH--HhhhhheEee
Confidence            887  6688999999999999999999987 44434444 5654433  3456666665

>KOG0056|consensus

Probab=98.88  E-value=6.8e-09  Score=92.31  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=96.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ...|++.+.+.   .....+.++++....|..++++||||+||||++|+|-++     |...+|+.+|.           
T Consensus       538 i~fsnvtF~Y~---p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I  614 (790)
T KOG0056|consen  538 IEFSNVTFAYD---PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI  614 (790)
T ss_pred             EEEEEeEEecC---CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence            34555555543   233456789999999999999999999999999999875     66666665541           


Q ss_pred             ----ccc------------c-cCCc---hhHH----------------HHHHHhCCccC-CCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRA------------Y-DVGT---RGNQ----------------VVRELFGEDIA-LPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~------------~-~~~~---~~~~----------------~~~~~~g~~~~-~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.            | .++.   +.++                +.....|+..+ -++|..+|..+++.+..+|.
T Consensus       615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~  694 (790)
T KOG0056|consen  615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS  694 (790)
T ss_pred             CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence                000            1 1110   0111                11112222222 25678899999999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++.++.++....+.++.-+.+.-++...+++ +|-|.--   -.+|.+.+++
T Consensus       695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTi---vnAD~ILvi~  746 (790)
T KOG0056|consen  695 IILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTI---VNADLILVIS  746 (790)
T ss_pred             EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehhe---ecccEEEEEe
Confidence              667777777777777776666655445545555 6765431   2456666653

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.87  E-value=2.2e-10  Score=90.15  Aligned_cols=38  Identities=29%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+++.+++..+++..++++|.||||||||+|+|+++
T Consensus        25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm   62 (267)
T COG4167          25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence            44788899999999999999999999999999999997

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.86  E-value=6.7e-09  Score=86.57  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=90.4

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------------------ccc----c
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------------------GHR----A  113 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------------------~~~----~  113 (212)
                      ..+..+..-+.+|-|+|||||||+++++++|     |...++...+                          .|-    +
T Consensus        17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN   96 (352)
T COG4148          17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN   96 (352)
T ss_pred             EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence            3455666789999999999999999999997     3333332211                          110    0


Q ss_pred             --c---cCCchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-
Q psy17138        114 --Y---DVGTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS-  178 (212)
Q Consensus       114 --~---~~~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~-  178 (212)
                        |   ......++.++...|..-+       -+.|..+|..++..+..+|++  ++++-+-++-.-.+++...++.+. 
T Consensus        97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~  176 (352)
T COG4148          97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD  176 (352)
T ss_pred             hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence              1   0001235666666665422       256788999999999999984  466666666666667766666665 


Q ss_pred             -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       -+..++.+ +|-+.|.  ..++|+++++.
T Consensus       177 e~~IPIlYV-SHS~~Ev--~RLAd~vV~le  203 (352)
T COG4148         177 EINIPILYV-SHSLDEV--LRLADRVVVLE  203 (352)
T ss_pred             hcCCCEEEE-ecCHHHH--HhhhheEEEec
Confidence             23455555 7887764  57999999875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.85  E-value=4.4e-09  Score=105.68  Aligned_cols=143  Identities=12%  Similarity=0.088  Sum_probs=98.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc----cc-cccCCc-------h----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG----HR-AYDVGT-------R----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~----~~-~~~~~~-------~----  119 (212)
                      ..++++++....|.+++|+|+||||||||+++|+++-        ...+++..+.    +. .|.++.       .    
T Consensus       777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~  856 (1394)
T TIGR00956       777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES  856 (1394)
T ss_pred             EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence            4678889999999999999999999999999999762        2233332111    00 011110       0    


Q ss_pred             --------------------hHHHHHHHhCCccC-----------CCCCccchHhHHHHhcCChH---HHHHHHhhhhHH
Q psy17138        120 --------------------GNQVVRELFGEDIA-----------LPDGSIDRKKLGAIVFSNKD---EMNKLNQAIWPL  165 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~~~-----------~~~~~~~r~~l~~~vf~~~~---~~~~~~~i~~p~  165 (212)
                                          ..+++++.+|..-.           -+.|+.+|-.++..+..+|+   +++++.+.+++.
T Consensus       857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~  936 (1394)
T TIGR00956       857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ  936 (1394)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence                                11233344443211           13456778889988889995   679999999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ....+.+.++++......+++.+|.+... +.+.||+++++.
T Consensus       937 ~~~~i~~~L~~la~~g~tvI~t~H~~~~~-~~~~~D~vl~L~  977 (1394)
T TIGR00956       937 TAWSICKLMRKLADHGQAILCTIHQPSAI-LFEEFDRLLLLQ  977 (1394)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCCCHH-HHHhcCEEEEEc
Confidence            99999999988764457888889987542 235689998875

>PRK08233 hypothetical protein; Provisional

Probab=98.83  E-value=1.3e-08  Score=79.89  Aligned_cols=104  Identities=13%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cC-CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LG-AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg-~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~  153 (212)
                      +.+|+|+|++||||||+++.|+. ++ ..++..|......   ..   ........      .+.         .+    
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~---~~---~~~~~~~~------~~~---------~~----   57 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN---CP---EDICKWID------KGA---------NY----   57 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc---Cc---hhhhhhhh------ccC---------Ch----
Confidence            68999999999999999999985 43 3344333221110   00   00000000      000         00    


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                           .......+.+.+......  .+..++++|+++... ..+...+|.++++++|.+
T Consensus        58 -----~~~~~~~~~~~l~~~~~~--~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~  109 (182)
T PRK08233         58 -----SEWVLTPLIKDIQELIAK--SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLD  109 (182)
T ss_pred             -----hhhhhHHHHHHHHHHHcC--CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHH
Confidence                 011112222222222211  223688899987653 456778999999999976

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.83  E-value=6.4e-09  Score=90.56  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=110.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcc-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQL-------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i-------  109 (212)
                      ..+.+.+..|...+....++++++++..+|+.++|+|.||||||-.+..+.+|-          -..+++..+       
T Consensus         7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~   86 (534)
T COG4172           7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ   86 (534)
T ss_pred             eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence            457888888988888889999999999999999999999999999999998861          223333222       


Q ss_pred             ---------ccccccCCc-------------------------hh---HHHHHHHhCCcc----------CCCCCccchH
Q psy17138        110 ---------GHRAYDVGT-------------------------RG---NQVVRELFGEDI----------ALPDGSIDRK  142 (212)
Q Consensus       110 ---------~~~~~~~~~-------------------------~~---~~~~~~~~g~~~----------~~~~~~~~r~  142 (212)
                               +.-+-+|-.                         ..   .-++.+..|.+-          .-+.|+.+|.
T Consensus        87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV  166 (534)
T COG4172          87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV  166 (534)
T ss_pred             HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence                     111100000                         00   112222223221          1146788999


Q ss_pred             hHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        143 KLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       143 ~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++..+..+|+++  ++++..++-.+...+.+.+++++  .+-.++|| +|.|--  .++++|+|.++.
T Consensus       167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfI-THDL~i--Vr~~ADrV~VM~  232 (534)
T COG4172         167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI-THDLGI--VRKFADRVYVMQ  232 (534)
T ss_pred             HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEE-eccHHH--HHHhhhhEEEEe
Confidence            9998899999855  67888899999999999998887  44567777 888753  357889998764

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.82  E-value=1e-08  Score=79.68  Aligned_cols=31  Identities=42%  Similarity=0.587  Sum_probs=27.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQ  108 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~  108 (212)
                      +|+|+|++||||||+++.|++ +|+++++.|.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~   33 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGD   33 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHH
Confidence            799999999999999999975 7999988764

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.82  E-value=2.4e-09  Score=108.21  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG------------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~------------  110 (212)
                      ..++++.++|+..  .-..++++++..++|+.+||+|++|||||||+++|.++    |...+|+-.+.            
T Consensus      1218 I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271      1218 MDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred             EEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence            4567777777532  12467889999999999999999999999999999987    44555543321            


Q ss_pred             -------------cccccCCc----hhHHHHHHH---------h--CCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138        111 -------------HRAYDVGT----RGNQVVREL---------F--GEDIA-------LPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       111 -------------~~~~~~~~----~~~~~~~~~---------~--g~~~~-------~~~~~~~r~~l~~~vf~~~~--  153 (212)
                                   ++++.+..    ......++.         .  |.+..       -+.|+.+|-.|++.+..++.  
T Consensus      1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271      1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred             EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence                         11111111    000111111         1  11100       03467778889999999988  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.++-+++.....+.+.|++... .+++++-+|-+.-.   ..||++++++
T Consensus      1376 lLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti---~~~DrIlvL~ 1425 (1490)
T TIGR01271      1376 LLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEAL---LECQQFLVIE 1425 (1490)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence            56888889999999999999987643 46777778887432   4699999986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.79  E-value=2.9e-08  Score=77.50  Aligned_cols=156  Identities=14%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             echhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee------eCCccc--------
Q psy17138         50 SSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI------NCDQLG--------  110 (212)
Q Consensus        50 ss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi------~~D~i~--------  110 (212)
                      .+..+.-......+..++++++...+|+.++|+||||||||||+-.|++|     |-..+      ..|+-+        
T Consensus        10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~   89 (228)
T COG4181          10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH   89 (228)
T ss_pred             hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence            33344444444466777888999999999999999999999999999987     11111      111100        


Q ss_pred             ----------------cccc-----cCC---chh---HHHHHHHhCCc--c-----CCCCCccchHhHHHHhcCChHHH-
Q psy17138        111 ----------------HRAY-----DVG---TRG---NQVVRELFGED--I-----ALPDGSIDRKKLGAIVFSNKDEM-  155 (212)
Q Consensus       111 ----------------~~~~-----~~~---~~~---~~~~~~~~g~~--~-----~~~~~~~~r~~l~~~vf~~~~~~-  155 (212)
                                      -++.     ..+   ...   -..+....|..  .     .-+.|..+|..|++.+...|+.+ 
T Consensus        90 vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf  169 (228)
T COG4181          90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF  169 (228)
T ss_pred             eeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence                            0000     000   011   12222333321  1     11456778999998887778743 


Q ss_pred             -HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        156 -NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       156 -~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                       ++++.-++...-+.+.+.+-+.+ +...+.++.+|...-+   ..|+|.+.+..
T Consensus       170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA---~Rc~R~~r~~~  221 (228)
T COG4181         170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA---ARCDRQLRLRS  221 (228)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH---Hhhhheeeeec
Confidence             45555566666666666664444 3445666668886543   57999887653

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.78  E-value=1.7e-08  Score=81.04  Aligned_cols=135  Identities=10%  Similarity=0.103  Sum_probs=82.9

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------------eee-eCCcc------ccccccCC----------c
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------------GLI-NCDQL------GHRAYDVG----------T  118 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------------~vi-~~D~i------~~~~~~~~----------~  118 (212)
                      +++....| +++|+||||||||||+++|.++..             .++ .....      .+-.|.++          .
T Consensus        16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~   94 (197)
T cd03278          16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQ   94 (197)
T ss_pred             eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEeh
Confidence            44556668 999999999999999999986510             011 11000      00001111          0


Q ss_pred             hhHHHHHHHhCCccCC------CCCccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEE
Q psy17138        119 RGNQVVRELFGEDIAL------PDGSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVI  186 (212)
Q Consensus       119 ~~~~~~~~~~g~~~~~------~~~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvi  186 (212)
                      .....+++. . ...+      +.|+.+|..++..+.    ++|.  +++++.+.++|.....+.+.++++..+ ..+++
T Consensus        95 ~~~~~~l~~-~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~tiIi  171 (197)
T cd03278          95 GDVSEIIEA-P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKE-TQFIV  171 (197)
T ss_pred             hhHHHHHhC-C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccC-CEEEE
Confidence            112223332 1 1111      234556667776543    4444  568888999999999999999887543 45666


Q ss_pred             EeccccccccccccCeEEEEEeCC
Q psy17138        187 EAAVLLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       187 e~~~l~e~~~~~~~d~v~~v~~~~  210 (212)
                      -+|.+...   +.||+++.+...+
T Consensus       172 itH~~~~~---~~~d~v~~~~~~~  192 (197)
T cd03278         172 ITHRKGTM---EAADRLYGVTMQE  192 (197)
T ss_pred             EECCHHHH---hhcceEEEEEecc
Confidence            69988653   4799999988765

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.77  E-value=1.4e-08  Score=102.19  Aligned_cols=143  Identities=10%  Similarity=0.059  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCccc------c--ccccCC---------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQLG------H--RAYDVG---------  117 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i~------~--~~~~~~---------  117 (212)
                      ..+++++....+|++++|+||||||||||+|+|+++.         ...+++..+.      +  -.|.++         
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            4567788999999999999999999999999999751         1223221110      0  001000         


Q ss_pred             ----------------------chh-----HHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHH
Q psy17138        118 ----------------------TRG-----NQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMN  156 (212)
Q Consensus       118 ----------------------~~~-----~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~  156 (212)
                                            ...     .+.+++.+|....            -+.|+.+|..++..+..+|.  +++
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD  234 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD  234 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence                                  000     1223444554321            14578889999999999998  568


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++.+.+++.....+.+.++++. .....+++..|...+. ..++||+++++.
T Consensus       235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~-i~~l~D~v~~L~  285 (1394)
T TIGR00956       235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD-AYELFDKVIVLY  285 (1394)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH-HHHhhceEEEEe
Confidence            8999999999999999998876 3356788878876432 357899999875

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.77  E-value=2.3e-08  Score=80.56  Aligned_cols=142  Identities=14%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc-----------ccCCc---------
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA-----------YDVGT---------  118 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~-----------~~~~~---------  118 (212)
                      ++++.+++....+.++.|+|.|||||||+++.+++-     |...++..++.+..           ++...         
T Consensus        20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi   99 (263)
T COG1101          20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI   99 (263)
T ss_pred             HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence            566778999999999999999999999999999973     66666655442211           00000         


Q ss_pred             -------------------------hhHHHHHHHhCCccC---------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        119 -------------------------RGNQVVRELFGEDIA---------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       119 -------------------------~~~~~~~~~~g~~~~---------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                                               ..+...+...|....         -+.|+.+--.|....++.|.  ++++-++.+
T Consensus       100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAAL  179 (263)
T COG1101         100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL  179 (263)
T ss_pred             HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcC
Confidence                                     011222222222111         12344444455556677777  567888899


Q ss_pred             hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|.....+.+.-++.- ...-..+.-+|.|.+|  .++-+|.+++.
T Consensus       180 DPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A--l~yG~RlImLh  223 (263)
T COG1101         180 DPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA--LDYGNRLIMLH  223 (263)
T ss_pred             CcchHHHHHHHHHHHHHhcCCceEEEeccHHHH--HhhCCeEEEEe
Confidence            9998888876665554 3344566668998776  46777877654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.75  E-value=1.2e-08  Score=103.15  Aligned_cols=139  Identities=15%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc------------cccccccCC----chhHHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ------------LGHRAYDVG----TRGNQV  123 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~------------i~~~~~~~~----~~~~~~  123 (212)
                      .++++++..++|.+++|+||+|||||||++.|.++     |...+++..            ..+++...+    ...+..
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~  520 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS  520 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence            46778899999999999999999999999999986     332232210            011111000    111222


Q ss_pred             HHHH---------h--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH-HHhhcCCCc
Q psy17138        124 VREL---------F--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE-IARLSESHK  182 (212)
Q Consensus       124 ~~~~---------~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~-i~~~~~~~~  182 (212)
                      .++.         +  |..      . .-+.|+.+|-.|++.+.++|+  +++.+.+.+++...+.+.+. +.... ..+
T Consensus       521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~  599 (1490)
T TIGR01271       521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNK  599 (1490)
T ss_pred             HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC
Confidence            2221         1  110      0 013467789999999999998  66888899999999999875 44442 356


Q ss_pred             EEEEEeccccccccccccCeEEEEE
Q psy17138        183 VIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       183 ~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+++-+|.+...   ..||++++++
T Consensus       600 tvilvtH~~~~~---~~ad~ii~l~  621 (1490)
T TIGR01271       600 TRILVTSKLEHL---KKADKILLLH  621 (1490)
T ss_pred             eEEEEeCChHHH---HhCCEEEEEE
Confidence            777779998654   4699999885

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.73  E-value=1.4e-08  Score=102.86  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--ccccc-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QLGHR-------  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i~~~-------  112 (212)
                      ..+++.++.+..  .....++++++..++|.+++|+|+||||||||+++|.++     |...++..  -+.++       
T Consensus       637 i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       637 ITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             EEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence            445555555531  112356788999999999999999999999999999986     32222210  00111       


Q ss_pred             ---cccC----CchhHHHHHHH---------h--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        113 ---AYDV----GTRGNQVVREL---------F--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       113 ---~~~~----~~~~~~~~~~~---------~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                         +...    ....+....+.         +  |.+      . .-+.|+.+|-.|++.+.++|+  +++++.+.+++.
T Consensus       715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~  794 (1522)
T TIGR00957       715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH  794 (1522)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence               1110    11122222221         1  110      0 013467889999999999998  668889999999


Q ss_pred             HHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+.+.+.+....  ...+.+++-+|.+...   ..||++++++
T Consensus       795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l---~~~D~ii~l~  835 (1522)
T TIGR00957       795 VGKHIFEHVIGPEGVLKNKTRILVTHGISYL---PQVDVIIVMS  835 (1522)
T ss_pred             HHHHHHHHHhhhhhhhcCCEEEEEeCChhhh---hhCCEEEEec
Confidence            9999988875421  2346777779987553   4599998875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.71  E-value=4.2e-08  Score=80.86  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             CccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138        137 GSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       137 ~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~  210 (212)
                      |+.+|..++..+.    ++|.  +++++.+.++|...+.+.+.+.++.. ..++++.+|.. +  ...+||+++++..+.
T Consensus       162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~-~--~~~~~d~i~~l~~~~  237 (243)
T cd03272         162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP-E--LLEVADKFYGVKFRN  237 (243)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H--HHhhCCEEEEEEEEC
Confidence            4556667776553    3454  56888899999999999999888744 45777777763 3  347999999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK04182 cytidylate kinase; Provisional

Probab=98.70  E-value=3.5e-08  Score=77.20  Aligned_cols=32  Identities=34%  Similarity=0.572  Sum_probs=28.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      ++|+|+|++||||||+++.|+ .+|++++++|.
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~   33 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGE   33 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence            379999999999999999998 58999888654

>PLN03232 ABC transporter C family member; Provisional

Probab=98.70  E-value=2.1e-08  Score=101.62  Aligned_cols=156  Identities=12%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---c--------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---G--------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~--------  110 (212)
                      ..+++.++.+... .....++++++..++|.+++|+|++|||||||++.|.++     |-.+.-...+   .        
T Consensus       615 I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g  693 (1495)
T PLN03232        615 ISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA  693 (1495)
T ss_pred             EEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence            4456666655421 111346788999999999999999999999999999975     2111000111   1        


Q ss_pred             --cccccC----CchhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138        111 --HRAYDV----GTRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP  164 (212)
Q Consensus       111 --~~~~~~----~~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p  164 (212)
                        +++...    +...+...++..+.           +- .      -+.|+.+|-.|++.++++|+  +++.+.+.+++
T Consensus       694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~  773 (1495)
T PLN03232        694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA  773 (1495)
T ss_pred             cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence              111110    11223333332221           10 0      13467889999999999998  66888888998


Q ss_pred             HHHHHHHHH-HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        165 LILAQVKEE-IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       165 ~~~~~~~~~-i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+. +... ...+++++-+|-+..   ...||++++++
T Consensus       774 ~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~---l~~aD~Ii~L~  813 (1495)
T PLN03232        774 HVAHQVFDSCMKDE-LKGKTRVLVTNQLHF---LPLMDRIILVS  813 (1495)
T ss_pred             HHHHHHHHHHhhhh-hcCCEEEEEECChhh---HHhCCEEEEEe
Confidence            888777544 3332 234677777887643   35799998885

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.70  E-value=7.3e-09  Score=83.24  Aligned_cols=133  Identities=12%  Similarity=0.016  Sum_probs=72.9

Q ss_pred             CCCCCCCCCC-eEEEEecCCCCcHHHHHHHHH------HcCCeeeeCC--ccc--cccccCCchhHHHHHHHhCCccCCC
Q psy17138         67 QPKPHLSPYP-YIIGLTGGIASGKSTIAKYLE------TLGAGLINCD--QLG--HRAYDVGTRGNQVVRELFGEDIALP  135 (212)
Q Consensus        67 ~~~~~~~~~~-~iigl~G~~GsGKSTl~~~L~------~lg~~vi~~D--~i~--~~~~~~~~~~~~~~~~~~g~~~~~~  135 (212)
                      .+.++....+ .+++|+|||||||||+++.+.      ..|+.+....  .++  .+.+..-..  +..+.. +..-+ .
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~--~~~l~~-~~s~f-s   93 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGD--EQSIEQ-SLSTF-S   93 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCc--hhhhhc-CcchH-H
Confidence            3456667777 589999999999999999988      2243322111  111  111110000  000000 00000 1


Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH-HHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK-EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~-~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++.++..+... ..+|+  +++++...++|.....+. ..++.+......+++.+|.. +  +..+||+++.+.
T Consensus        94 ~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~--l~~~~d~~~~l~  164 (200)
T cd03280          94 SHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-E--LKAYAYKREGVE  164 (200)
T ss_pred             HHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-H--HHHHHhcCCCeE
Confidence            223334444433 45665  557788888998888774 45555543345777778863 2  456888876653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.69  E-value=2.2e-08  Score=83.56  Aligned_cols=125  Identities=12%  Similarity=0.094  Sum_probs=64.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH----cC--CeeeeCCccccccccCCchhHHHH-H--HHhCCccCCC--CCccchHhHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET----LG--AGLINCDQLGHRAYDVGTRGNQVV-R--ELFGEDIALP--DGSIDRKKLGA  146 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~----lg--~~vi~~D~i~~~~~~~~~~~~~~~-~--~~~g~~~~~~--~~~~~r~~l~~  146 (212)
                      +|||+|+|||||||+++.|..    .|  ..+++.|..-+  |..  ...... .  ..-+... +.  ....+...|..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr--~~r--~~~~~~~~~a~~~~~nf-dHf~PeAnd~dlL~~   75 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR--YER--MEMKMAIAEALDAGRNF-SHFGPEANLFDLLEE   75 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc--CCc--hhHHHHHHHHhhcCCCC-CCCCcccccHHHHHH
Confidence            589999999999999998873    23  45677776443  111  111110 1  1111111 11  11233332221


Q ss_pred             HhcCChHHHHHHHhhhhHHHHHHHH----------HHH--HhhcCCCcEEEEEecc----ccccccccccCeEEEEEeCC
Q psy17138        147 IVFSNKDEMNKLNQAIWPLILAQVK----------EEI--ARLSESHKVIVIEAAV----LLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       147 ~vf~~~~~~~~~~~i~~p~~~~~~~----------~~i--~~~~~~~~~vvie~~~----l~e~~~~~~~d~v~~v~~~~  210 (212)
                      .    -..+..-..+-.|.+.+...          .+.  .....+.+++|+||-.    +....+++++|..++|+++.
T Consensus        76 ~----l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~  151 (277)
T cd02029          76 L----FRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPII  151 (277)
T ss_pred             H----HHHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcH
Confidence            1    11111112233344433110          000  0011467899999996    33457889999999999876


Q ss_pred             C
Q psy17138        211 Q  211 (212)
Q Consensus       211 ~  211 (212)
                      +
T Consensus       152 d  152 (277)
T cd02029         152 N  152 (277)
T ss_pred             H
Confidence            5

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.69  E-value=1.4e-08  Score=102.15  Aligned_cols=143  Identities=15%  Similarity=0.131  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-----c-ccccCCc-------h---
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-----H-RAYDVGT-------R---  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-----~-~~~~~~~-------~---  119 (212)
                      ..+++++....+|++++|+||||||||||+++|+++-.        ..+++..+.     + -.|.++.       .   
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E  258 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE  258 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence            45677889999999999999999999999999997521        122221110     0 0010000       0   


Q ss_pred             ----------------------------------------------------hHHHHHHHhCCccC------------CC
Q psy17138        120 ----------------------------------------------------GNQVVRELFGEDIA------------LP  135 (212)
Q Consensus       120 ----------------------------------------------------~~~~~~~~~g~~~~------------~~  135 (212)
                                                                          ..+.+++.+|.+..            -+
T Consensus       259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS  338 (1470)
T PLN03140        259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS  338 (1470)
T ss_pred             HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence                                                                01223444554321            13


Q ss_pred             CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .|+.+|..++..+..+|.  +++++.+.+++.....+.+.+++.. .....+++..|...+ ...++||+++++.
T Consensus       339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~-~i~~lfD~vilL~  412 (1470)
T PLN03140        339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP-ETFDLFDDIILLS  412 (1470)
T ss_pred             cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-HHHHHhheEEEee
Confidence            567788899999999988  5688899999999999998888875 345678887876542 2357999999875

>PRK06547 hypothetical protein; Provisional

Probab=98.66  E-value=3.6e-08  Score=77.59  Aligned_cols=37  Identities=30%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      ..++.+|+|.|++||||||+++.|++ ++..+++.|.+
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~   49 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL   49 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence            45588999999999999999999974 78888888764

>PLN03140 ABC transporter G family member; Provisional

Probab=98.66  E-value=3.2e-08  Score=99.71  Aligned_cols=143  Identities=14%  Similarity=0.038  Sum_probs=96.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc-----cc-cccCCc-------h----
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG-----HR-AYDVGT-------R----  119 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~-----~~-~~~~~~-------~----  119 (212)
                      ..+++++....+|.+++|+||||||||||+++|+++..       ..+++-...     +. .|.++.       .    
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~  973 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES  973 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence            45677888999999999999999999999999998621       223221110     00 011100       0    


Q ss_pred             --------------------hHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        120 --------------------GNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       120 --------------------~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                                          ..+++++.+|..-.            -+.|+.+|..++..+..+|+  +++++.+.+++.
T Consensus       974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140        974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence                                11233444443211            12345667888888999998  568899999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ....+.+.+++.......+++.+|.+... ....||+++++.
T Consensus      1054 ~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~-i~~~~D~vllL~ 1094 (1470)
T PLN03140       1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLMK 1094 (1470)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHhCCEEEEEc
Confidence            99999999988764456888889987521 235899998875

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.65  E-value=6.3e-08  Score=73.18  Aligned_cols=30  Identities=43%  Similarity=0.644  Sum_probs=27.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCC
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCD  107 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D  107 (212)
                      +|.|+|++||||||+++.|+. +|.++++.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            479999999999999999985 789988877

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.64  E-value=1.4e-07  Score=76.14  Aligned_cols=65  Identities=11%  Similarity=0.001  Sum_probs=47.5

Q ss_pred             hHHHHhcCChH--HHHHHHhhhhHHHHH-HHHHHHHhhcCC-CcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138        143 KLGAIVFSNKD--EMNKLNQAIWPLILA-QVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~-~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~~~~  210 (212)
                      .++..+..+|.  +++++.+.++|.... .+.+.+.+.... ...+++-+|.+..   ...||+++.+.-+.
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~---~~~~d~i~~l~~~~  199 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL---VDAADHIYRVEKDG  199 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH---HhhCCEEEEEeeCC
Confidence            45566667777  568888899999998 898888877532 4466666887644   35799999887553

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.63  E-value=9.7e-08  Score=86.65  Aligned_cols=143  Identities=11%  Similarity=0.110  Sum_probs=76.9

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc----cc----CC-chhHHHHHHHhCCccCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA----YD----VG-TRGNQVVRELFGEDIAL  134 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~----~~----~~-~~~~~~~~~~~g~~~~~  134 (212)
                      -.+++.+.. ++.+|+|.|||||||||+++.|+ .+|+.+++++.+.+.+    ..    .. ......++..+......
T Consensus       274 LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~  352 (512)
T PRK13477        274 LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKP  352 (512)
T ss_pred             EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeecc
Confidence            345555555 68999999999999999999998 5799999988765543    11    10 01111112111111100


Q ss_pred             C-CCc----cchHhHHHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        135 P-DGS----IDRKKLGAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       135 ~-~~~----~~r~~l~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      . ++.    ++-..+...+ ..+..-..... -..|.+++.+....+++.... -+++|+.++-.. ....+|..+|++|
T Consensus       353 ~~~~~~~i~~~~~dv~~~i-Rs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~-~iV~eGRDigtv-V~P~AdlKIfL~A  429 (512)
T PRK13477        353 SSGSPQRVWINGEDVTEAI-RSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKG-GLVAEGRDIGTH-VFPDAELKIFLTA  429 (512)
T ss_pred             CCCCCceEEeCCcchHhhh-cchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcC-CEEEEcccceeE-EcCCCCEEEEEEC
Confidence            0 000    0000011000 11111111111 145778888877766654222 489999985432 1234799999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      +.+
T Consensus       430 s~e  432 (512)
T PRK13477        430 SVE  432 (512)
T ss_pred             CHH
Confidence            875

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.63  E-value=3.4e-07  Score=73.70  Aligned_cols=127  Identities=17%  Similarity=0.176  Sum_probs=71.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cCC-chhHHHHHHHhCCccCCCCCccchHhHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DVG-TRGNQVVRELFGEDIALPDGSIDRKKLG  145 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~~~~~r~~l~  145 (212)
                      ..+|+|-||+||||||+++.|+ .||+.++++..+-+.+-        ... ......+...+.......    +     
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~----~-----   74 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVND----D-----   74 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceeccc----c-----
Confidence            3789999999999999999998 68999998765433210        000 011111111111111000    0     


Q ss_pred             HHhcCChHH----H-HHHHh-----hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        146 AIVFSNKDE----M-NKLNQ-----AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       146 ~~vf~~~~~----~-~~~~~-----i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      +.++.+.+.    + +...+     -.+|.+++.+.++.++......-+++||-.+=-. ..--++..+|+++++|+
T Consensus        75 ~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTv-V~PdA~lKiFLtAS~e~  150 (222)
T COG0283          75 RVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTV-VFPDAELKIFLTASPEE  150 (222)
T ss_pred             eEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcce-ECCCCCeEEEEeCCHHH
Confidence            011111111    0 11111     2568888888777776654445688888876432 22356889999988763

>PLN03130 ABC transporter C family member; Provisional

Probab=98.63  E-value=3.3e-08  Score=100.64  Aligned_cols=155  Identities=14%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcc---c-------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQL---G-------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i---~-------  110 (212)
                      ..+++.++++... .....++++++..++|.+++|+|++|||||||++.|.+.      |...+.. .+   .       
T Consensus       615 I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~-~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        615 ISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-TVAYVPQVSWIFN  692 (1622)
T ss_pred             eEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-eEEEEcCccccCC
Confidence            4456666655321 111346788999999999999999999999999999975      2211111 11   1       


Q ss_pred             ---cccccC----CchhHHHHHHHhC-----------Ccc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        111 ---HRAYDV----GTRGNQVVRELFG-----------EDI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       111 ---~~~~~~----~~~~~~~~~~~~g-----------~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                         +++...    ....+...++..+           .+. .      -+.|+.+|-.|++.++++++  +++.+.+.++
T Consensus       693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD  772 (1622)
T PLN03130        693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD  772 (1622)
T ss_pred             CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence               111111    1122333332211           110 0      13467889999999999998  6678888899


Q ss_pred             HHHHHHHHH-HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKE-EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~-~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +...+.+.+ .+.... ..+++++-+|-+..   ...||++++++
T Consensus       773 ~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~---l~~aD~Ii~L~  813 (1622)
T PLN03130        773 AHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF---LSQVDRIILVH  813 (1622)
T ss_pred             HHHHHHHHHHHhhHHh-cCCEEEEEECCHhH---HHhCCEEEEEe
Confidence            887776643 344332 34677777888743   46799998875

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.62  E-value=2.1e-08  Score=78.55  Aligned_cols=136  Identities=20%  Similarity=0.218  Sum_probs=77.3

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc---------ccc--------------------cc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG---------HRA--------------------YD  115 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~---------~~~--------------------~~  115 (212)
                      .+.+...|+++-++|||||||||++..++++    |-..+++-.+.         |..                    +.
T Consensus        18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q   97 (248)
T COG4138          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ   97 (248)
T ss_pred             cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence            4467889999999999999999999999987    44444443321         111                    22


Q ss_pred             CCchh---HHHHHHHhCCccC-------CCCCccchHhHHHHhcC-----ChH----HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138        116 VGTRG---NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS-----NKD----EMNKLNQAIWPLILAQVKEEIAR  176 (212)
Q Consensus       116 ~~~~~---~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~-----~~~----~~~~~~~i~~p~~~~~~~~~i~~  176 (212)
                      |....   .+.+....+.+..       -+.|..+|..++..+.|     ||.    +++++-+-++-.-...+...+.+
T Consensus        98 P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~  177 (248)
T COG4138          98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA  177 (248)
T ss_pred             chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHH
Confidence            22111   2223333322110       13567788888765554     222    22333333433333333334444


Q ss_pred             hcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        177 LSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       177 ~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +-.....|++.+|.|..+  ..-+|++|.+
T Consensus       178 ~c~~G~~vims~HDLNhT--LrhA~~~wLL  205 (248)
T COG4138         178 LCQQGLAIVMSSHDLNHT--LRHAHRAWLL  205 (248)
T ss_pred             HHhCCcEEEEeccchhhH--HHHHHHHHHH
Confidence            434567889999999865  3456777653

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.62  E-value=4.3e-08  Score=79.52  Aligned_cols=70  Identities=10%  Similarity=0.023  Sum_probs=49.6

Q ss_pred             CCccchHhHHHHhcC----------ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeE
Q psy17138        136 DGSIDRKKLGAIVFS----------NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEI  203 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~----------~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v  203 (212)
                      .|+..|..++..+..          +|+  +++++.+.++|...+.+.+.+.++......+++-+|.+...  ..+||++
T Consensus       126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~--~~~~~~i  203 (213)
T cd03279         126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELK--ERIPQRL  203 (213)
T ss_pred             HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHH--HhhCcEE
Confidence            456667777766643          333  45677888999999999888877754355777779987654  4678888


Q ss_pred             EEEE
Q psy17138        204 WVTF  207 (212)
Q Consensus       204 ~~v~  207 (212)
                      +++.
T Consensus       204 ~~~~  207 (213)
T cd03279         204 EVIK  207 (213)
T ss_pred             EEEe
Confidence            8875

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.62  E-value=1.6e-08  Score=80.41  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=94.9

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc------------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL------------  109 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i------------  109 (212)
                      .+.+.+.+|+    -.+++++.++....|++-+|+||||+||||++..|.+.     |-.+++.+ ++            
T Consensus         7 ~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           7 YLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             EEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            3555666665    23788889999999999999999999999999999975     44555542 11            


Q ss_pred             -ccccccCC---------------------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHh
Q psy17138        110 -GHRAYDVG---------------------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIV  148 (212)
Q Consensus       110 -~~~~~~~~---------------------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~v  148 (212)
                       ++..-.|.                                 ....+++....|..-.       -+-|+.++..++..+
T Consensus        83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll  162 (249)
T COG4674          83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL  162 (249)
T ss_pred             cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence             11111111                                 0012222332222110       134677888898888


Q ss_pred             cCChHH--HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        149 FSNKDE--MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       149 f~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .|+|.+  ++++-+.+-.+-....-+.++.++..+.++++ .|.|--  .+.++++|.++
T Consensus       163 ~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVV-EHDM~F--vr~~A~~VTVl  219 (249)
T COG4674         163 AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV-EHDMGF--VREIADKVTVL  219 (249)
T ss_pred             ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEE-eccHHH--HHHhhheeEEE
Confidence            899984  46666666666666777777777555556666 555532  13466666554

>PTZ00243 ABC transporter; Provisional

Probab=98.61  E-value=3.5e-08  Score=100.18  Aligned_cols=139  Identities=17%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-------CCc-c----ccccccCC----chhHHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-------CDQ-L----GHRAYDVG----TRGNQV  123 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-------~D~-i----~~~~~~~~----~~~~~~  123 (212)
                      .++++++..++|.+++|+|+||||||||+++|.++     |...++       -+. +    .++....+    ...+..
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~  754 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD  754 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence            45678889999999999999999999999999986     221111       010 0    01111000    001111


Q ss_pred             HH---------HHh--CC------ccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCCc
Q psy17138        124 VR---------ELF--GE------DIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESHK  182 (212)
Q Consensus       124 ~~---------~~~--g~------~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~~  182 (212)
                      .+         +.+  |.      ... -+.|+.+|-.|++.+..+|+  +++++.+.+++...+.+.+.+ ... ...+
T Consensus       755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~  833 (1560)
T PTZ00243        755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGK  833 (1560)
T ss_pred             HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCC
Confidence            11         112  11      110 13467788899999999998  668888999998877775533 222 2346


Q ss_pred             EEEEEeccccccccccccCeEEEEE
Q psy17138        183 VIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       183 ~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+++-+|.+...   ..||++++++
T Consensus       834 TvIlvTH~~~~~---~~ad~ii~l~  855 (1560)
T PTZ00243        834 TRVLATHQVHVV---PRADYVVALG  855 (1560)
T ss_pred             EEEEEeCCHHHH---HhCCEEEEEE
Confidence            777779988654   4799999875

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.61  E-value=2.2e-08  Score=87.11  Aligned_cols=32  Identities=38%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++.....+|+++.|+|.|||||||+++.|.||
T Consensus       341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL  372 (546)
T COG4615         341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGL  372 (546)
T ss_pred             ceeeEEecCcEEEEECCCCCcHHHHHHHHhcc
Confidence            35678999999999999999999999999998

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.61  E-value=3.3e-08  Score=79.61  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=102.4

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--eeeeCCcc-----------------
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--GLINCDQL-----------------  109 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--~vi~~D~i-----------------  109 (212)
                      |.+..+.+.+....+++++.++.....|++-|++|.||||||-++|.+++..-  -.+-+|..                 
T Consensus         6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk   85 (330)
T COG4170           6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK   85 (330)
T ss_pred             ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence            56666777766678899999999999999999999999999999999997411  11122221                 


Q ss_pred             --cccc----------ccCCchhHH---------------------------HHHHHhCCcc----C------CCCCccc
Q psy17138        110 --GHRA----------YDVGTRGNQ---------------------------VVRELFGEDI----A------LPDGSID  140 (212)
Q Consensus       110 --~~~~----------~~~~~~~~~---------------------------~~~~~~g~~~----~------~~~~~~~  140 (212)
                        ++++          +.|+...-.                           ++.+..|...    .      -.+|.-+
T Consensus        86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q  165 (330)
T COG4170          86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ  165 (330)
T ss_pred             hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence              1111          111111111                           1122222210    0      0234444


Q ss_pred             hHhHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138        141 RKKLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       141 r~~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~  210 (212)
                      +..++-.+...|.++  +++++-+.|.....+.+.+..+. .....+++-+|.+.-  +..+||++-+++|-.
T Consensus       166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~--is~W~d~i~VlYCGQ  236 (330)
T COG4170         166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM--ISQWADKINVLYCGQ  236 (330)
T ss_pred             eeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH--HHHHhhheEEEEecc
Confidence            555555566666643  56778888998888888887776 445677777888854  467899999998853

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.58  E-value=2e-07  Score=73.44  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      ..+++|+|++||||||+++.|+ .+|+.+++++.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~   37 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL   37 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence            5689999999999999999997 568888776543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.56  E-value=5.2e-08  Score=71.51  Aligned_cols=31  Identities=45%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQ  108 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~  108 (212)
                      +|+|+|++||||||+++.|+. +|+.++++|.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            589999999999999999996 6999998876

...

>KOG0061|consensus

Probab=98.56  E-value=5.5e-08  Score=90.49  Aligned_cols=143  Identities=13%  Similarity=0.090  Sum_probs=98.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCcc-----------------------c--
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQL-----------------------G--  110 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i-----------------------~--  110 (212)
                      +-+++++.....|++.||.||||||||||+++|++..        ...+++-..                       .  
T Consensus        44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E  123 (613)
T KOG0061|consen   44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE  123 (613)
T ss_pred             eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence            4456677788899999999999999999999999752        222333110                       0  


Q ss_pred             -----cccccCC-------chhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138        111 -----HRAYDVG-------TRGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP  164 (212)
Q Consensus       111 -----~~~~~~~-------~~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p  164 (212)
                           ..+..+.       ...++.++..+|..-.            .+.|+..|..+|.-+..||.  .+++++..++.
T Consensus       124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS  203 (613)
T KOG0061|consen  124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS  203 (613)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence                 0011111       1235556666665411            12357778889988899998  45889999999


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        165 LILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       165 ~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .....+-+.+++...+.++|+...|-.-- .+.+++|+++++.
T Consensus       204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss-~lf~lFD~l~lLs  245 (613)
T KOG0061|consen  204 FSALQVVQLLKRLARSGRTVICTIHQPSS-ELFELFDKLLLLS  245 (613)
T ss_pred             hhHHHHHHHHHHHHhCCCEEEEEEeCCcH-HHHHHHhHhhhhc
Confidence            99999988888887558999999997643 3556788776653

>PRK04040 adenylate kinase; Provisional

Probab=98.56  E-value=2.4e-07  Score=73.95  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L--GAGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D  107 (212)
                      +.+|+|+|.+||||||+++.|.. +  ++.+++.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g   36 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFG   36 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecc
Confidence            57899999999999999999974 5  67766644

>PRK15453 phosphoribulokinase; Provisional

Probab=98.55  E-value=1.3e-07  Score=79.57  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c-----CCeeeeCCc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L-----GAGLINCDQ  108 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l-----g~~vi~~D~  108 (212)
                      +.++.+|||+|+|||||||+++.|+. +     ...+++.|.
T Consensus         2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~   43 (290)
T PRK15453          2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS   43 (290)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence            45678999999999999999999974 2     245666664

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.55  E-value=2.3e-07  Score=77.72  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             CccchHhHHHHhcCC---hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        137 GSIDRKKLGAIVFSN---KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       137 ~~~~r~~l~~~vf~~---~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      |+.+|-.++..+..+   |.  +++++...++|.....+.+.+.++......+++-+|.+...   ..||+++.+
T Consensus       173 Ge~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i---~~aD~ii~L  244 (261)
T cd03271         173 GEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI---KCADWIIDL  244 (261)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCEEEEe
Confidence            566788888877775   44  56788899999999999998887764455677778988654   368988776

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN02200 adenylate kinase family protein

Probab=98.54  E-value=3.7e-07  Score=75.31  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      ...+.+|.|+|++||||||+++.|+ .+|+.+++++.+.
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdll   78 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLL   78 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHH
Confidence            4457899999999999999999997 5799888875443

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.2e-07  Score=79.67  Aligned_cols=140  Identities=18%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------------------------cc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------------------------HR  112 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------------------------~~  112 (212)
                      .-+.++++..+.|..++++|++|+||||+++.|-++     |...+|...+.                          +.
T Consensus       277 ~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yn  356 (497)
T COG5265         277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYN  356 (497)
T ss_pred             hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHH
Confidence            344667889999999999999999999999999864     55555433320                          00


Q ss_pred             c-ccCCch------------hHHHHHHHhC--------CccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        113 A-YDVGTR------------GNQVVRELFG--------EDIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       113 ~-~~~~~~------------~~~~~~~~~g--------~~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                      + |.....            .....++.+.        +..+ -+.|+.+|..+++.+..+|.  .+++.+..++....+
T Consensus       357 i~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~  436 (497)
T COG5265         357 IKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ  436 (497)
T ss_pred             HhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHH
Confidence            0 000000            0111112111        1111 24578889999999999998  457777788887778


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++..++....++..+++ +|-|---   --+|++++++
T Consensus       437 ~iq~~l~~~~~~rttlvi-ahrlsti---~~adeiivl~  471 (497)
T COG5265         437 AIQAALREVSAGRTTLVI-AHRLSTI---IDADEIIVLD  471 (497)
T ss_pred             HHHHHHHHHhCCCeEEEE-eehhhhc---cCCceEEEee
Confidence            887777777656666666 6766431   2468887765

>PRK13946 shikimate kinase; Provisional

Probab=98.53  E-value=3.2e-07  Score=72.75  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      ....|.|+|++||||||+++.|+ .||++++++|.+
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~   44 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE   44 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH
Confidence            35679999999999999999998 589999999854

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.53  E-value=1.6e-07  Score=73.69  Aligned_cols=48  Identities=19%  Similarity=0.144  Sum_probs=39.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++.++.|..    .+.-.+++|....|+++||+|.||||||||+++|.+.
T Consensus         8 ~V~~lsk~Yg~----~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r   55 (258)
T COG4107           8 SVSGLSKLYGP----GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR   55 (258)
T ss_pred             eehhhhhhhCC----CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc
Confidence            35666666642    2455679999999999999999999999999999863

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.52  E-value=3.5e-07  Score=71.02  Aligned_cols=35  Identities=40%  Similarity=0.495  Sum_probs=30.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      ++..|.|+|++||||||+++.|+. +|+.+++.|.+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~   38 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL   38 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence            467899999999999999999984 79999988754

>KOG0062|consensus

Probab=98.50  E-value=1.2e-07  Score=84.65  Aligned_cols=120  Identities=14%  Similarity=0.071  Sum_probs=74.7

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc---CCee---eeCCcccc------------ccccCCc---------hh
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL---GAGL---INCDQLGH------------RAYDVGT---------RG  120 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~v---i~~D~i~~------------~~~~~~~---------~~  120 (212)
                      .-++...+|...||+|+||+|||||+|+|+.-   ++++   +.+|.+.+            ++...+.         ..
T Consensus        98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei  177 (582)
T KOG0062|consen   98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEI  177 (582)
T ss_pred             CCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHH
Confidence            34556788999999999999999999999862   3333   22333322            1111110         11


Q ss_pred             HHHHHHHhCCcc-------CC-CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecc
Q psy17138        121 NQVVRELFGEDI-------AL-PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV  190 (212)
Q Consensus       121 ~~~~~~~~g~~~-------~~-~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~  190 (212)
                      +..++.-+|-.-       -. +.|=..|..|++.+|++|+  ++++++|.++-.....+..-+...   ..++++.+|.
T Consensus       178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD  254 (582)
T KOG0062|consen  178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD  254 (582)
T ss_pred             HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence            111222233211       00 2333458899999999999  568899999888777877777654   2466666774

>KOG0054|consensus

Probab=98.50  E-value=5e-07  Score=89.52  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=99.6

Q ss_pred             cccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-c----CCeeeeCCc--c--------
Q psy17138         45 EEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-L----GAGLINCDQ--L--------  109 (212)
Q Consensus        45 ~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-l----g~~vi~~D~--i--------  109 (212)
                      ....+++.+..+.. ...-..++++++..++|.+++|+|+.|||||+|+.+|.| +    |...+++..  +        
T Consensus       517 ~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n  595 (1381)
T KOG0054|consen  517 NAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN  595 (1381)
T ss_pred             ceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence            33456666666544 223336788899999999999999999999999999986 3    333333221  0        


Q ss_pred             --ccccccCC----chhHHHHHHHhC-----------Cc------cC-CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        110 --GHRAYDVG----TRGNQVVRELFG-----------ED------IA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       110 --~~~~~~~~----~~~~~~~~~~~g-----------~~------~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                        .+++...+    ...|+..++.-.           +.      .. -++|+.+|-.||+.|++|.+  +++.+-..++
T Consensus       596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD  675 (1381)
T KOG0054|consen  596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD  675 (1381)
T ss_pred             CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence              11111111    234555544321           11      01 14578889999999999988  5666666666


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ..+-+.+.+..-...-.++++++.+|.+.   +...||.++++.
T Consensus       676 ahvg~~if~~ci~~~L~~KT~ILVTHql~---~L~~ad~Iivl~  716 (1381)
T KOG0054|consen  676 AHVGKHIFEECIRGLLRGKTVILVTHQLQ---FLPHADQIIVLK  716 (1381)
T ss_pred             HhhhHHHHHHHHHhhhcCCEEEEEeCchh---hhhhCCEEEEec
Confidence            66666654443222245678888899543   346789998874

>KOG0927|consensus

Probab=98.50  E-value=2.3e-07  Score=83.34  Aligned_cols=153  Identities=15%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee--------eeCCccc-----
Q psy17138         44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL--------INCDQLG-----  110 (212)
Q Consensus        44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v--------i~~D~i~-----  110 (212)
                      ....++++.++.|.    ...+..+..++..+|+.+||+|+|||||||+++++.+--.|.        ++.....     
T Consensus        73 s~dvk~~sls~s~~----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a  148 (614)
T KOG0927|consen   73 SRDVKIESLSLSFH----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA  148 (614)
T ss_pred             cccceeeeeeeccC----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence            45566777777665    225567788899999999999999999999999998642221        1111000     


Q ss_pred             -ccc-----------------ccC---C--ch----hHH---------------HHHHHhCCc-------cC-CCCCccc
Q psy17138        111 -HRA-----------------YDV---G--TR----GNQ---------------VVRELFGED-------IA-LPDGSID  140 (212)
Q Consensus       111 -~~~-----------------~~~---~--~~----~~~---------------~~~~~~g~~-------~~-~~~~~~~  140 (212)
                       +..                 |..   +  ..    .++               .+..-.|..       +. -++|...
T Consensus       149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm  228 (614)
T KOG0927|consen  149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM  228 (614)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence             000                 000   0  00    000               000001100       00 0345556


Q ss_pred             hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138        141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW  204 (212)
Q Consensus       141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~  204 (212)
                      |..|+..+|+.|+  +++.+.+.+++.....+.+.+.+..  ...+++..|.-.-  +..+|.-++
T Consensus       229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~~lVi~sh~QDf--ln~vCT~Ii  290 (614)
T KOG0927|consen  229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RIILVIVSHSQDF--LNGVCTNII  290 (614)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--CceEEEEecchhh--hhhHhhhhh
Confidence            8899999999999  5688999999999999998887642  2245554665321  233554443

>KOG3308|consensus

Probab=98.49  E-value=2.5e-07  Score=73.65  Aligned_cols=128  Identities=18%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHh-CCccCCCCCccchHh----HHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELF-GEDIALPDGSIDRKK----LGAI  147 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~r~~----l~~~  147 (212)
                      +-.+|||.|.+-||||||++.|..+  |+.+|+-|+    .|.+..    ++.... |..-++....++..+    ++.+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDD----FyKp~~----Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~   74 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDD----FYKPEN----EIEVDYNNIDNWDLLESLDMEKFLEKIATW   74 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeecccc----ccCchh----hhhcccCCcchhcchhhhhHHHHHHHHHHH
Confidence            3478999999999999999999875  677777664    333331    111111 111111111222221    2211


Q ss_pred             hcCChHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccc-ccccccCeEEEEEeCCC
Q psy17138        148 VFSNKDEMN-KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA-KWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       148 vf~~~~~~~-~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~-~~~~~~d~v~~v~~~~~  211 (212)
                      +-+ +...+ ..+.++.-....+....-..-..+..++++|+.++++. +..+.||+.+++.+|-+
T Consensus        75 l~~-~~~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~  139 (225)
T KOG3308|consen   75 LDS-RHNAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYE  139 (225)
T ss_pred             hcC-ccccchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHH
Confidence            111 00000 00111111111111111111114567899999999963 56789999999988754

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.48  E-value=8.2e-08  Score=69.58  Aligned_cols=42  Identities=17%  Similarity=-0.043  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCD  107 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D  107 (212)
                      ++.++++....+.+++|+||||||||||++++. -|...++.+
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-~G~i~~~g~   45 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-KRKHRLVGD   45 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-CCeEEEeeE
Confidence            445567778889999999999999999999987 333344443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.46  E-value=3.9e-07  Score=69.84  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+++.+.+|+++.|.|||||||||++..+.+.
T Consensus        19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~   51 (213)
T COG4136          19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA   51 (213)
T ss_pred             EeeeEEecCCcEEEEECCCCccHHHHHHHHHhh
Confidence            346788999999999999999999999999874

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.44  E-value=6.3e-07  Score=74.31  Aligned_cols=72  Identities=6%  Similarity=0.013  Sum_probs=49.5

Q ss_pred             ccchHhHHHHhcC----ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        138 SIDRKKLGAIVFS----NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       138 ~~~r~~l~~~vf~----~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +.+|..++..+..    .|.  +++++.+.+++.....+.+.+.++......+++-+|...   +...||+++.+.-+.+
T Consensus       160 ~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~---~~~~~d~i~~~~~~~~  236 (247)
T cd03275         160 EKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE---FFSKADALVGVYRDQE  236 (247)
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH---HHhhCCeEEEEEecCC
Confidence            3445556654432    344  557888889999999998888887533446666688742   3468999999987765


Q ss_pred             C
Q psy17138        212 E  212 (212)
Q Consensus       212 ~  212 (212)
                      +
T Consensus       237 ~  237 (247)
T cd03275         237 C  237 (247)
T ss_pred             C
Confidence            3

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.44  E-value=8.5e-07  Score=69.17  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      ..+.|+|++||||||+++.|+. +|+++++.|.+.+.
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~   39 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS   39 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence            3578999999999999999985 79999998865544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.43  E-value=3.2e-08  Score=74.20  Aligned_cols=31  Identities=32%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++...+|.+++|+|+||||||||+++|.++
T Consensus         4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen    4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             eEEEEcCCCEEEEEccCCCccccceeeeccc
Confidence            4556778999999999999999999999986

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.40  E-value=1.6e-06  Score=76.88  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCc------hhHHHHHH-----HhCCc---------
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGT------RGNQVVRE-----LFGED---------  131 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~------~~~~~~~~-----~~g~~---------  131 (212)
                      ....++++|++||||-||||++++|++.--+.=..+.-.+-.|.|+.      ...+.++.     .++..         
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~p  442 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP  442 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCc
Confidence            56789999999999999999999999741110000000011122220      01111110     01111         


Q ss_pred             ----------cC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccc
Q psy17138        132 ----------IA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQ  197 (212)
Q Consensus       132 ----------~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~  197 (212)
                                +. -+.|.++|..++..+..+.+  +++++.+.++-+-+-.+...|+... ...+..++-.|.++-..  
T Consensus       443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d--  520 (591)
T COG1245         443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID--  520 (591)
T ss_pred             cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhh--
Confidence                      10 14578999999988888776  6788888888776655555555554 44566666677776542  


Q ss_pred             cccCeEEEEE
Q psy17138        198 DQVHEIWVTF  207 (212)
Q Consensus       198 ~~~d~v~~v~  207 (212)
                      =+.|+++++.
T Consensus       521 yvsDr~ivF~  530 (591)
T COG1245         521 YVSDRLIVFE  530 (591)
T ss_pred             hhhceEEEEe
Confidence            2567777664

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.40  E-value=1.4e-06  Score=68.49  Aligned_cols=33  Identities=36%  Similarity=0.451  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~  108 (212)
                      ...|.|+|++||||||+++.|++ +|++++++|.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            45699999999999999999984 6889998885

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.40  E-value=2.4e-06  Score=70.00  Aligned_cols=36  Identities=31%  Similarity=0.486  Sum_probs=31.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      ..+|+|.|++||||||+++.|+ .+|+++++++.+.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r   40 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYR   40 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHH
Confidence            4789999999999999999997 68999999887543

>PRK06217 hypothetical protein; Validated

Probab=98.39  E-value=3.8e-07  Score=72.21  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR  112 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~  112 (212)
                      ..|.|+|++||||||+++.|+ .+|+++++.|.+.+.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~   38 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL   38 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence            569999999999999999998 579999999976653

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.39  E-value=2.9e-07  Score=74.78  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=46.6

Q ss_pred             CccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        137 GSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       137 ~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      |+.+|..++..+.    ++|+  .++++.+.++|.....+++.++++..+..++++ +|..   ...++||+++++.-
T Consensus       131 G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv-s~~~---~~~~~~d~v~~~~~  204 (212)
T cd03274         131 GEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI-SLRN---NMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECcH---HHHHhCCEEEEEEe
Confidence            3445666665442    2344  567888899999999999999887544445555 5653   24579999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054|consensus

Probab=98.38  E-value=4.5e-07  Score=89.87  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=104.5

Q ss_pred             ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------
Q psy17138         44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------  110 (212)
Q Consensus        44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------  110 (212)
                      ..+..+.+.+.||+..  .-..++++++....++.|||+|..|||||||+..|-++     |...||.-++.        
T Consensus      1136 ~G~I~f~~~~~RYrp~--lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN--LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred             CCeEEEEEeEEEeCCC--CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence            4445688888888643  22466889999999999999999999999999999876     66677654441        


Q ss_pred             -----------------cccccCCchh-------------HHHHHHHhCCcc--C-C------CCCccchHhHHHHhcCC
Q psy17138        111 -----------------HRAYDVGTRG-------------NQVVRELFGEDI--A-L------PDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       111 -----------------~~~~~~~~~~-------------~~~~~~~~g~~~--~-~------~~~~~~r~~l~~~vf~~  151 (212)
                                       +.+++|....             ....+.......  . .      +-|+.+--.|++.+...
T Consensus      1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred             hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence                             2222222110             112222222111  0 1      12344455677777766


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      .+  .+++.++-+++..+.-+++-|++..++. +|+.=+|=+.--   --||+|+++|.
T Consensus      1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~dc-TVltIAHRl~TV---md~DrVlVld~ 1348 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFKDC-TVLTIAHRLNTV---MDSDRVLVLDA 1348 (1381)
T ss_pred             CCEEEEecccccCChHHHHHHHHHHHHHhcCC-eEEEEeeccchh---hhcCeEEEeeC
Confidence            65  4577788899999999999998876444 444447776532   25899999875

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.34  E-value=2.6e-07  Score=72.13  Aligned_cols=51  Identities=20%  Similarity=0.088  Sum_probs=43.6

Q ss_pred             ceechhhhhhh---hccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         48 KLSSSNLRMRE---LGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        48 ~iss~~~r~~~---~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+++.++.|..   .|-.+..++++++....|+++.+-|||||||||++|+|-+
T Consensus         6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa   59 (235)
T COG4778           6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA   59 (235)
T ss_pred             eeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh
Confidence            35666777754   3667888899999999999999999999999999999975

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.34  E-value=1.1e-06  Score=81.18  Aligned_cols=98  Identities=20%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             HHHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCC-------------CCCCC
Q psy17138         14 KVNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQP-------------KPHLS   73 (212)
Q Consensus        14 ~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~-------------~~~~~   73 (212)
                      -+.+.-.+.|++++.+..+.|-..       +.++.+.+-..+|++.+|....... .||+.             .+...
T Consensus       311 i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~-~pP~~f~rpeV~~iL~~~~~~r~  389 (568)
T PRK05537        311 LFAKYADEIGITMVPFKEMVYVQDKAQYVPVDEVPQGATVLTISGTELRRRLREGL-EIPEWFSFPEVVAELRRTYPPRH  389 (568)
T ss_pred             HHHhCccccCceEEecceeEEEcCCCeEEecCcCCCCcceeccCHHHHHHHHHCCC-CCChhhcHHHHHHHHHHHhcccc
Confidence            334444688999999999888873       1123344567799999987654222 23322             25567


Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCC------eeeeCCccccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGA------GLINCDQLGHR  112 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~------~vi~~D~i~~~  112 (212)
                      .+|++|.|+|.+||||||+++.|+. ++.      .++|.|.+.+.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~  435 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKH  435 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHh
Confidence            7899999999999999999999984 553      77888877543

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.33  E-value=1.4e-06  Score=79.97  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc----cccccccCCchh---------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ----LGHRAYDVGTRG---------------  120 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~----i~~~~~~~~~~~---------------  120 (212)
                      -+++.++..++|.-+-|.|+||||||||+|.|+|+     |......|.    +++..|.|.+..               
T Consensus       408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d  487 (604)
T COG4178         408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD  487 (604)
T ss_pred             eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCCh
Confidence            34556788999999999999999999999999997     322222221    233444443211               


Q ss_pred             --HHHHHHHhCCcc----------C---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138        121 --NQVVRELFGEDI----------A---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIAR  176 (212)
Q Consensus       121 --~~~~~~~~g~~~----------~---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~  176 (212)
                        ..+.....|..-          +   -+.|+.+|-.+++++++.|+  .+++-++.+++.....+.+.+++
T Consensus       488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence              111111111110          1   13467788899999999988  56777888888888888777765

>TIGR01351 adk adenylate kinases

Probab=98.32  E-value=1.8e-06  Score=69.86  Aligned_cols=35  Identities=31%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      |.|+|++||||||+++.|+ .+|+.+++++.+.++.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~   37 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE   37 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh
Confidence            6889999999999999997 5899999876554443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK08118 topology modulation protein; Reviewed

Probab=98.32  E-value=5.3e-07  Score=70.58  Aligned_cols=34  Identities=38%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      ..|.|+|++||||||+++.|+ .++.++++.|.+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~   36 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF   36 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence            468999999999999999998 5789988888654

>KOG0927|consensus

Probab=98.30  E-value=3.8e-07  Score=81.99  Aligned_cols=132  Identities=16%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee----------------------eeCCcccccc----ccC--CchhH
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL----------------------INCDQLGHRA----YDV--GTRGN  121 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v----------------------i~~D~i~~~~----~~~--~~~~~  121 (212)
                      .+-......++++||||+||||++|++.+.-.+.                      .+.|.-+-+.    |.+  .....
T Consensus       410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~  489 (614)
T KOG0927|consen  410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEM  489 (614)
T ss_pred             hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHH
Confidence            4567778889999999999999999998751111                      0111111111    111  11234


Q ss_pred             HHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccc
Q psy17138        122 QVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVL  191 (212)
Q Consensus       122 ~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l  191 (212)
                      ..++..||...-        -++|+..|...+....+.|.  +++++.+.++-...+.+.+.|.+.  .+.+|++ +|.+
T Consensus       490 r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~v-SHDf  566 (614)
T KOG0927|consen  490 RSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLV-SHDF  566 (614)
T ss_pred             HHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeee-echh
Confidence            566667775521        13566667777777778887  568888888888888888888774  3345555 6665


Q ss_pred             cccccccccCeEEEE
Q psy17138        192 LSAKWQDQVHEIWVT  206 (212)
Q Consensus       192 ~e~~~~~~~d~v~~v  206 (212)
                      .--  ....+++|.|
T Consensus       567 rlI--~qVaeEi~~c  579 (614)
T KOG0927|consen  567 RLI--SQVAEEIWVC  579 (614)
T ss_pred             hHH--HHHHHHhHhh
Confidence            531  2355666654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.30  E-value=3.2e-07  Score=75.05  Aligned_cols=128  Identities=15%  Similarity=0.085  Sum_probs=69.2

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH------cCCeeeeCCccccccccCCchhHHHHHHHhCCccC----CC
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET------LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIA----LP  135 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~------lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~----~~  135 (212)
                      ++++.+..+.+.+++|+|||||||||+++.+.-      .|+++. ++...   +    ...+.+...+|..-.    .+
T Consensus        20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vp-a~~~~---~----~~~~~il~~~~l~d~~~~~lS   91 (222)
T cd03285          20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVP-CDSAD---I----PIVDCILARVGASDSQLKGVS   91 (222)
T ss_pred             EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcC-cccEE---E----eccceeEeeeccccchhcCcC
Confidence            455666677789999999999999999999763      354322 11100   0    011111222221100    01


Q ss_pred             CCccchHhHHHHh--cCChH--HHHHH---HhhhhHHHHHHHH-HHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        136 DGSIDRKKLGAIV--FSNKD--EMNKL---NQAIWPLILAQVK-EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       136 ~~~~~r~~l~~~v--f~~~~--~~~~~---~~i~~p~~~~~~~-~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .++.++..++..+  ..+++  +++++   .+.+++....... +.+.+  .....+++.+|+ .+  +.++||++..+
T Consensus        92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~--~~~~~vlisTH~-~e--l~~~~~~~~~i  165 (222)
T cd03285          92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT--QIKCFCLFATHF-HE--LTALADEVPNV  165 (222)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh--cCCCeEEEEech-HH--HHHHhhcCCCe
Confidence            2233455555454  45665  45666   5566766554322 22322  234578888995 33  45678776544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.29  E-value=1e-06  Score=68.39  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=72.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc-CCe---eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL-GAG---LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFS  150 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l-g~~---vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~  150 (212)
                      .+.+..|+|||||||||+++.+.-. +..   ....+.+....+.+.....  ++.. -..  .+.|+.++..++..+..
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~i~~-~~~--lS~G~~~~~~la~~L~~   94 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAE--LIFT-RLQ--LSGGEKELSALALILAL   94 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEE--Eehh-eee--ccccHHHHHHHHHHHHh
Confidence            3478999999999999999998631 100   0000000000000000000  0000 001  14556667777766643


Q ss_pred             ----ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        151 ----NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       151 ----~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                          +|.  +++++...++|.....+.+.+.+.......+++.+|.....   ..+|+++.+..
T Consensus        95 ~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~---~~~d~~~~l~~  155 (162)
T cd03227          95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELA---ELADKLIHIKK  155 (162)
T ss_pred             cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH---HhhhhEEEEEE
Confidence                344  55777888889888888777766542245777779987654   46798887765

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.29  E-value=6.8e-07  Score=69.97  Aligned_cols=43  Identities=37%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH----cCC--eeeeCCccccccc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET----LGA--GLINCDQLGHRAY  114 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~----lg~--~vi~~D~i~~~~~  114 (212)
                      ...+|.++.+||.|||||||++..|..    +|.  .++|+|.+.|.+.
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~   67 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN   67 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc
Confidence            356689999999999999999999974    354  5678998887764

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.28  E-value=1.1e-06  Score=68.46  Aligned_cols=30  Identities=37%  Similarity=0.607  Sum_probs=27.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcCCeeeeCC
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLGAGLINCD  107 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D  107 (212)
                      .|+|+|.+|.||||+++.|..+|+.+++..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLRELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHHhCCceeeHH
Confidence            689999999999999999999999887643

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.28  E-value=2e-06  Score=67.30  Aligned_cols=33  Identities=39%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .-|.|+|+.||||||+.+.|+ .|+.+++|+|.+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~   36 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE   36 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH
Confidence            457899999999999999998 589999999853

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.28  E-value=9.8e-07  Score=69.66  Aligned_cols=35  Identities=34%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i  109 (212)
                      .|++++|+|+|||||||+++.|+++ +...+++|.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~   37 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL   37 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence            3789999999999999999999974 6667777654

>KOG2702|consensus

Probab=98.26  E-value=3.2e-07  Score=74.63  Aligned_cols=136  Identities=14%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc---CCeeeeCCccc--cccccCCchhHHHHHHHhCCccCC-----CCCccch
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL---GAGLINCDQLG--HRAYDVGTRGNQVVRELFGEDIAL-----PDGSIDR  141 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~vi~~D~i~--~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~r  141 (212)
                      .+....++|+.|++|+||||++..+..-   ...-+..+.+.  .-+-+.+-..+...+..|..+-..     +...+|-
T Consensus       115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~  194 (323)
T KOG2702|consen  115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS  194 (323)
T ss_pred             cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence            3667889999999999999999999752   11111111111  111112222223333333221100     0011221


Q ss_pred             HhHHHHhcCChHHHHH--HHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEecccc--cccccc---ccCeEEEEEeCCC
Q psy17138        142 KKLGAIVFSNKDEMNK--LNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLL--SAKWQD---QVHEIWVTFIPEQ  211 (212)
Q Consensus       142 ~~l~~~vf~~~~~~~~--~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~--e~~~~~---~~d~v~~v~~~~~  211 (212)
                      ..+    ++--.+++.  ...+.-|.+.+.+.+....-.   ...+++++|+.|++  +..|.+   ++|..|+++++-+
T Consensus       195 ~lf----l~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~  270 (323)
T KOG2702|consen  195 NLF----LQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYE  270 (323)
T ss_pred             HHH----HHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHH
Confidence            111    111112221  112344666666655543322   45789999999988  445765   6688999988643

>PRK13948 shikimate kinase; Provisional

Probab=98.26  E-value=1.5e-06  Score=69.00  Aligned_cols=39  Identities=28%  Similarity=0.283  Sum_probs=33.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      ++..|.|+|.+||||||+++.|+ .+|.+++|+|.+.++.
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~   48 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV   48 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH
Confidence            46789999999999999999998 5899999999765443

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.24  E-value=2.6e-06  Score=67.37  Aligned_cols=127  Identities=16%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCe--eeeCCc-c--ccccccCCchh------HHH-HHHHhC---CccCCCCCccch
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAG--LINCDQ-L--GHRAYDVGTRG------NQV-VRELFG---EDIALPDGSIDR  141 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~--vi~~D~-i--~~~~~~~~~~~------~~~-~~~~~g---~~~~~~~~~~~r  141 (212)
                      +.+|+|+||||||+++..|.- ++..  ....+. +  .++...++...      +.. ....+.   .++ -+.|+..|
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-LS~Ge~~r  102 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQI-LSGGEKSL  102 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCccc-CCHHHHHH
Confidence            889999999999999999973 3211  111010 0  01111111000      000 000000   011 13456667


Q ss_pred             HhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        142 KKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       142 ~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      ..++..+.    .+|+  +++++.+.+++.....+.+.+.+.......+++.+|....   ...+|+++.+.-
T Consensus       103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~---~~~adrvi~i~~  172 (178)
T cd03239         103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM---FENADKLIGVLF  172 (178)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH---HhhCCeEEEEEE
Confidence            77775542    4555  5577888899999998888887765333566666887643   247999988864

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK07261 topology modulation protein; Provisional

Probab=98.23  E-value=1.2e-06  Score=68.80  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~  111 (212)
                      .|.|+|++||||||+++.|+. ++.++++.|.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            589999999999999999984 6888888887643

>PRK06762 hypothetical protein; Provisional

Probab=98.22  E-value=8.3e-07  Score=68.87  Aligned_cols=38  Identities=37%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCCcccccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L--GAGLINCDQLGHRA  113 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D~i~~~~  113 (212)
                      +.+|+|+|++||||||+++.|+. +  ++.+++.|.+.+.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l   42 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM   42 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence            57899999999999999999975 4  46667777665543

>PRK13949 shikimate kinase; Provisional

Probab=98.22  E-value=1.5e-06  Score=68.20  Aligned_cols=35  Identities=34%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      ..|.|+|++||||||+++.|+ .++++++++|.+.+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~   37 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE   37 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence            358999999999999999998 47999999997643

>PLN02199 shikimate kinase

Probab=98.21  E-value=8.7e-07  Score=75.03  Aligned_cols=53  Identities=28%  Similarity=0.409  Sum_probs=40.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGE  130 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~  130 (212)
                      +..|.|+|.+||||||++++|+. +|++++|+|.+.++.+.  ......+...+|.
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~--G~sI~eIf~~~GE  155 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN--GTSVAEIFVHHGE  155 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc--CCCHHHHHHHhCH
Confidence            66899999999999999999985 89999999988777542  1233444555554

>PRK03839 putative kinase; Provisional

Probab=98.21  E-value=1.1e-06  Score=69.16  Aligned_cols=33  Identities=33%  Similarity=0.575  Sum_probs=29.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      .|.|+|++||||||+++.|+. +++++++.|.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~   35 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFA   35 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhh
Confidence            589999999999999999985 799999988654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.19  E-value=7.7e-06  Score=65.70  Aligned_cols=69  Identities=6%  Similarity=0.055  Sum_probs=49.3

Q ss_pred             CccchHhHHHHh----cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-C--CCcEEEEEeccccccccccccCeEEEEE
Q psy17138        137 GSIDRKKLGAIV----FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-E--SHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       137 ~~~~r~~l~~~v----f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~--~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+.+|..++..+    .++|+  +++++.+.+++.....+.+.+.+.. .  +...+++.+|.+.+..   .+|+|-++.
T Consensus       113 G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~---~~d~v~~~~  189 (198)
T cd03276         113 GERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA---SSDDVKVFR  189 (198)
T ss_pred             hHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc---cccceeEEE
Confidence            455566666555    46776  6688899999999999988887754 3  3457888889998752   358887665


Q ss_pred             e
Q psy17138        208 I  208 (212)
Q Consensus       208 ~  208 (212)
                      .
T Consensus       190 ~  190 (198)
T cd03276         190 M  190 (198)
T ss_pred             e
Confidence            4

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.18  E-value=2.1e-06  Score=69.37  Aligned_cols=34  Identities=24%  Similarity=0.012  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++++++....+.+++|+|||||||||+++.+..
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4555677777889999999999999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.18  E-value=2.7e-06  Score=75.43  Aligned_cols=133  Identities=18%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee--eeCCcccc------------ccccCC----------------
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL--INCDQLGH------------RAYDVG----------------  117 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v--i~~D~i~~------------~~~~~~----------------  117 (212)
                      ++.|.++||+|+||-||||.+++|++-     |-.-  .++|.+-+            .++...                
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~  176 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV  176 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence            677999999999999999999999963     2110  12222200            000000                


Q ss_pred             --------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        118 --------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       118 --------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                                    ...++++++.++..-.       -+.|.++|..++..+.++.+  .++++...++-.-+-.+.+.|
T Consensus       177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~I  256 (591)
T COG1245         177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI  256 (591)
T ss_pred             hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHH
Confidence                          0123444444443211       14578899999887777665  455555555544444555566


Q ss_pred             HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++....++|++-.|.|.-.+|  +.|.+-+++
T Consensus       257 rel~~~~k~ViVVEHDLavLD~--lsD~vhI~Y  287 (591)
T COG1245         257 RELAEDGKYVIVVEHDLAVLDY--LSDFVHILY  287 (591)
T ss_pred             HHHhccCCeEEEEechHHHHHH--hhheeEEEe
Confidence            6665446777777888864333  567766654

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.16  E-value=1.8e-06  Score=66.72  Aligned_cols=32  Identities=50%  Similarity=0.561  Sum_probs=27.9

Q ss_pred             EEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         79 IGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      |.|+|++||||||+++.|++ ++..+++.|.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~   33 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH   33 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence            46899999999999999984 688899988764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.15  E-value=2.6e-06  Score=67.57  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=25.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL-GAGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D  107 (212)
                      |.+++|+|||||||||++++|+++ +..++..|
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~   34 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAH   34 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcC
Confidence            678999999999999999999876 34444433

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.14  E-value=2.3e-06  Score=68.65  Aligned_cols=40  Identities=33%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCccccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHR  112 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~  112 (212)
                      ..+|.+++|+|++||||||+++.|+++      +..++++|.+.+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~   66 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG   66 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence            456899999999999999999999863      3567788876543

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.14  E-value=2.5e-06  Score=65.01  Aligned_cols=34  Identities=47%  Similarity=0.567  Sum_probs=29.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~  111 (212)
                      ++.|+|++||||||+++.|.. ++..+++.|.+.+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~   35 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP   35 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccccc
Confidence            478999999999999999985 6888899887654

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.13  E-value=1.6e-05  Score=75.46  Aligned_cols=36  Identities=22%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      .+|+|.||+||||||+++.|++ +|+.++++..+.+.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~   38 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA   38 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence            4799999999999999999984 79999998776544

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.12  E-value=1.8e-05  Score=74.51  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=71.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc----ccCC----c-hhHHHHHHHhCCccCCCCCccchHhH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA----YDVG----T-RGNQVVRELFGEDIALPDGSIDRKKL  144 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~----~~~~----~-~~~~~~~~~~g~~~~~~~~~~~r~~l  144 (212)
                      +..+|+|.||+||||||+++.|+ .+|+++++++.+.+.+    ...+    . ..+......+........-.++-..+
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            35689999999999999999998 5899999988765443    1110    0 01111111111111000000000001


Q ss_pred             HHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        145 GAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       145 ~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      .. ...+++.-..... ..+|.+++.+....++... ..-+|+|+.++--. ..-.+|..+|++++.++
T Consensus       521 ~~-~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~-~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~  586 (661)
T PRK11860        521 TD-AIRTEAAGMGASRVSALPAVRAALLALQRSFRR-LPGLVADGRDMGTV-IFPDAALKVFLTASAEA  586 (661)
T ss_pred             hh-hhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhh-CCCEEEECCCCccE-ECCCCCeEEEEECChhH
Confidence            00 0111111111111 2458888888777766542 23478999886432 22347999999998764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.12  E-value=3.6e-06  Score=66.62  Aligned_cols=39  Identities=31%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccC
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDV  116 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~  116 (212)
                      .|.|+|+|||||||+++.|+ .++.++++.+.+-+.....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~   41 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE   41 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc
Confidence            57899999999999999997 5788999877665544433

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.11  E-value=2.4e-06  Score=65.08  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY  114 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~  114 (212)
                      |.|+|++||||||+++.|+ .+|+.++++|.+.+..+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~   38 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA   38 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence            7899999999999999998 67999999987655544

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08356 hypothetical protein; Provisional

Probab=98.11  E-value=4.5e-06  Score=66.71  Aligned_cols=33  Identities=39%  Similarity=0.765  Sum_probs=29.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      ..+|+|+||+||||||+++.|...|+.++.+..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~   37 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSD   37 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCC
Confidence            467999999999999999999988988887654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.10  E-value=4.2e-06  Score=65.81  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      +|.|+|++||||||+++.|+ .+|+.+++++.+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr   35 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLR   35 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHH
Confidence            47899999999999999997 58999999755433

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.10  E-value=2.2e-06  Score=66.30  Aligned_cols=39  Identities=44%  Similarity=0.572  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCcccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLGHRA  113 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~~~~  113 (212)
                      +|.+|.|+|.+||||||+++.|.. |   |  ..++|+|.+.+.+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l   45 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL   45 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence            588999999999999999999984 2   4  4456777666543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14530 adenylate kinase; Provisional

Probab=98.10  E-value=2.8e-06  Score=68.97  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      +..|.|+|++||||||+++.|+ .+|+.+++.+.+.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr   39 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALR   39 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHH
Confidence            3468999999999999999997 57999888765443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.09  E-value=3.7e-06  Score=54.79  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      |.+..|+|+|||||||++.++.-+
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            558999999999999999999854

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.08  E-value=1e-05  Score=67.22  Aligned_cols=113  Identities=18%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAI  147 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~  147 (212)
                      .+..+|||+||+|+|||||...|...    |  ..++--|.        ....       -|..++-     ||-.+. .
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP--------SSp~-------tGGAlLG-----DRiRM~-~   85 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP--------SSPF-------TGGALLG-----DRIRMQ-E   85 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G--------GGGC-------C---SS-------GGGCH-H
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC--------CCCC-------CCCcccc-----cHHHhc-C
Confidence            45789999999999999999998742    2  23333332        2110       1222211     222221 2


Q ss_pred             hcCChHHH--HHH----HhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc--ccccccccCeEEEEEeCC
Q psy17138        148 VFSNKDEM--NKL----NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL--SAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       148 vf~~~~~~--~~~----~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~--e~~~~~~~d~v~~v~~~~  210 (212)
                      ...||..+  ...    ...+.+...+ ....+..  .+.++|++|+--.=  |.++.+++|.+++|-.|-
T Consensus        86 ~~~d~~vfIRS~atRG~lGGls~~t~~-~v~ll~a--aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg  153 (266)
T PF03308_consen   86 LSRDPGVFIRSMATRGSLGGLSRATRD-AVRLLDA--AGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG  153 (266)
T ss_dssp             HHTSTTEEEEEE---SSHHHHHHHHHH-HHHHHHH--TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred             cCCCCCEEEeecCcCCCCCCccHhHHH-HHHHHHH--cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence            33333310  000    0112222222 2222332  57899999998755  455678999999998874

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.07  E-value=2.4e-06  Score=64.29  Aligned_cols=33  Identities=48%  Similarity=0.586  Sum_probs=27.9

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      +|.+.|++||||||+++.|. .+++.+++.|.+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~   34 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIR   34 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHH
Confidence            57899999999999999998 6788888877543

...

>PRK14527 adenylate kinase; Provisional

Probab=98.07  E-value=5.4e-06  Score=66.00  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      ..++.+|.++|++||||||+++.|+ .+|+.+++.+.+.+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r   42 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILR   42 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3468899999999999999999997 57888887765543

>KOG3347|consensus

Probab=98.07  E-value=1.5e-05  Score=60.82  Aligned_cols=36  Identities=33%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      .-|-|+|.+|+||||++..|+. +|+.+++...++++
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE   44 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE   44 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence            3478899999999999999985 68888886655544

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.07  E-value=2.6e-06  Score=73.06  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=34.5

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      ...+.++..|+|+|++||||||+++.|+ .+|+++++.|..
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~  167 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE  167 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH
Confidence            4457778899999999999999999997 579999988743

>PRK13947 shikimate kinase; Provisional

Probab=98.06  E-value=4.2e-06  Score=65.12  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=31.1

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      -|.|+|++||||||+++.|+ .+|+++++.|.+....
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~   39 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM   39 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence            48999999999999999997 5899999999765443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.05  E-value=2.8e-06  Score=68.35  Aligned_cols=24  Identities=33%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.+++|+|||||||||++|.+++
T Consensus        24 ~g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          24 KKNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHH
Confidence            369999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.04  E-value=2.1e-06  Score=76.97  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHH
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAK   94 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~   94 (212)
                      .+++++++...+|++++|+|||||||||+++
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            5678889999999999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK14532 adenylate kinase; Provisional

Probab=98.04  E-value=6.5e-06  Score=65.20  Aligned_cols=35  Identities=29%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR  112 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~  112 (212)
                      .|.|+|++||||||+++.|+ .+|+.++++|.+-++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~   37 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA   37 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence            37889999999999999997 579999998655443

>KOG3354|consensus

Probab=98.03  E-value=5.2e-06  Score=63.70  Aligned_cols=36  Identities=47%  Similarity=0.716  Sum_probs=31.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      +-.+.+.+.|.+||||||++++|. .||+.++++|.+
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~   46 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL   46 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccC
Confidence            346789999999999999999997 689999999874

>PRK00625 shikimate kinase; Provisional

Probab=98.03  E-value=4.3e-06  Score=65.87  Aligned_cols=34  Identities=29%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      .|.|+|.+||||||+++.|+ .+|++++|+|.+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~   36 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIV   36 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHH
Confidence            48899999999999999997 47999999997644

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.02  E-value=5.2e-06  Score=66.55  Aligned_cols=26  Identities=35%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+|.+++|+|||||||||+++.|.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999999875

>PRK02496 adk adenylate kinase; Provisional

Probab=98.01  E-value=6.7e-06  Score=64.92  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA  113 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~  113 (212)
                      ..+.|+|++||||||+++.|+. +|+++++.+.+.++.
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~   39 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQA   39 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHH
Confidence            5689999999999999999985 799888876554443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.01  E-value=8.8e-06  Score=64.40  Aligned_cols=36  Identities=33%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             EEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138         79 IGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY  114 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~  114 (212)
                      |.|+|++||||||+++.|+. +|+.+++.|.+.++.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~   38 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI   38 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence            78999999999999999985 6999999877655443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=1.1e-05  Score=61.34  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             ecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHH-HhCCccCCCCCccchHhHHHHhcCChHHHHHHH
Q psy17138         82 TGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRE-LFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLN  159 (212)
Q Consensus        82 ~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~~~  159 (212)
                      .|.+||||||++..|+ .||+.++++|.+     -|    .+.+.+ .-|.++-+.+...--..++...++-...-. ..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdl-----Hp----~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~-~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDL-----HP----PANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK-HV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceeccccc-----CC----HHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC-ce
Confidence            4899999999999998 689999999963     11    122222 125554333322112233333333211100 01


Q ss_pred             hhhhHHHHHHHHHHHHhhcCCCcEEEEEec
Q psy17138        160 QAIWPLILAQVKEEIARLSESHKVIVIEAA  189 (212)
Q Consensus       160 ~i~~p~~~~~~~~~i~~~~~~~~~vvie~~  189 (212)
                      -+......+.-+++++....+-.+|++++.
T Consensus        71 vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~  100 (161)
T COG3265          71 VIACSALKRSYRDLLREANPGLRFVYLDGD  100 (161)
T ss_pred             EEecHHHHHHHHHHHhccCCCeEEEEecCC
Confidence            123455666667777765444556666554

>KOG0064|consensus

Probab=98.00  E-value=1.7e-05  Score=71.54  Aligned_cols=108  Identities=14%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CC---------------eeeeCCccccccccCCch---------
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GA---------------GLINCDQLGHRAYDVGTR---------  119 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~---------------~vi~~D~i~~~~~~~~~~---------  119 (212)
                      .+++...|.-+-|+||||||||+|.|+|.++     |.               |+....-+..++..|...         
T Consensus       501 Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~  580 (728)
T KOG0064|consen  501 LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYT  580 (728)
T ss_pred             eeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCC
Confidence            5678889999999999999999999999997     11               111111111122222210         


Q ss_pred             -----------hHHHHHHHhCC-ccC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138        120 -----------GNQVVRELFGE-DIA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIAR  176 (212)
Q Consensus       120 -----------~~~~~~~~~g~-~~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~  176 (212)
                                 ..+.++++-|. +..      -+.|..+|..+++++|+-|.  ++++-++.+.+.+...+.+..+.
T Consensus       581 d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~  657 (728)
T KOG0064|consen  581 DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD  657 (728)
T ss_pred             HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh
Confidence                       01122222221 110      13577789999989888886  66666777777776666555544

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.00  E-value=4.9e-06  Score=65.34  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      |.+++|+|+|||||||+++.|+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.99  E-value=1.1e-05  Score=66.41  Aligned_cols=38  Identities=29%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      +..|.|+||+||||||+++.|+ .+|+++++.+.+-++.
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~   44 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREE   44 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHH
Confidence            4569999999999999999998 4799999988765543

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.98  E-value=6e-06  Score=64.67  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----C--CeeeeCCcccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----G--AGLINCDQLGH  111 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g--~~vi~~D~i~~  111 (212)
                      .+|.+++|+|++||||||+++.|++.    |  ..++++|.+.+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~   45 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT   45 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence            46889999999999999999999854    2  45678886543

>PRK14531 adenylate kinase; Provisional

Probab=97.97  E-value=1.2e-05  Score=63.71  Aligned_cols=34  Identities=24%  Similarity=0.159  Sum_probs=28.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      ..|.++|++||||||+++.|+ .+|+.+++++.+-
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~l   37 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLL   37 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHH
Confidence            468999999999999999996 6899999875443

>KOG0635|consensus

Probab=97.97  E-value=1.2e-05  Score=61.50  Aligned_cols=42  Identities=31%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcccccc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRA  113 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~~  113 (212)
                      ...+|.+|.|+|-|||||||++-.|..+      -...+|+|.+.|.+
T Consensus        27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL   74 (207)
T KOG0635|consen   27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL   74 (207)
T ss_pred             hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence            3567999999999999999999999753      24567899887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
2f6r_A	281	Crystal Structure Of Bifunctional Coenzyme A Syntha		2e-40
4i1u_A	210	Apo Crystal Structure Of A Dephospho-Coa Kinase Fro		3e-16
2if2_A	204	Crystal Structure Of The Putative Dephospho-Coa Kin		4e-14
2grj_A	192	Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1		5e-14
1vhl_A	218	Crystal Structure Of Dephospho-Coa Kinase With Aden		3e-12
1t3h_A	214	X-Ray Structure Of Dephospho-Coa Kinase From E. Col		5e-12
1n3b_A	216	Crystal Structure Of Dephosphocoenzyme A Kinase Fro		5e-12
1jjv_A	206	Dephospho-Coa Kinase In Complex With Atp Length = 2		3e-09
1uf9_A	203	Crystal Structure Of Tt1252 From Thermus Thermophil		2e-04

>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa Synthase): (18044849) From Mus Musculus At 1.70 A Resolution Length = 281

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 122/201 (60%), Gaps = 2/201 (0%)
Query: 13  VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHL 72
           + VN  R+ N  + L +  + LL  D   +E EEDK+SSS+ R R LG L +P   +P L
Sbjct: 13  MAVNRFRLENGKEELALYQIQLL-KDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPEL 71
Query: 73  SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI 132
               Y++GLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    Q V E FG DI
Sbjct: 72  PSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDI 131
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEI-ARLSESHKVIVIEAAVL 191
              DG+I+RK LG+ VF NK +M  L   +WP+I    +EE+   +++   + VI+AA+L
Sbjct: 132 LHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML 191
Query: 192 LSAKWQDQVHEIWVTFIPEQE 212
           L A WQ  VHE+W   IPE E
Sbjct: 192 LEAGWQSMVHEVWTVVIPETE 212

>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From Burkholderia Vietnamiensis Length = 210

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           Y IGLTGGI SGK+T+A      GA L++ D + HR           + + FG      D
Sbjct: 10  YAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAAD 69
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
           GS+DR ++ A++FS++D   +L     PLI A+ + E AR ++   VI +   ++ S  W
Sbjct: 70  GSLDRARMRALIFSDEDARRRLEAITHPLIRAETERE-ARDAQGPYVIFVVPLLVESRNW 128
Query: 197 QDQVHEIWVTFIP 209
           + +   + V   P
Sbjct: 129 KARCDRVLVVDCP 141

>pdb|2IF2|A Chain A, Crystal Structure Of The Putative Dephospho-Coa Kinase From Aquifex Aeolicus, Northeast Structural Genomics Target Qr72. Length = 204

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 79  IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGS 138
           IGLTG I  GKST+A+    LGA +++ D+L H  Y  G    + V + FG+ I   +G+
Sbjct: 4   IGLTGNIGCGKSTVAQXFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGN 63
Query: 139 IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQD 198
           IDRKKL  IVF +++++ KL +     +  ++++    LSE   + ++EA++L+      
Sbjct: 64  IDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSED-TLFILEASLLVEKGTYK 122
Query: 199 QVHEIWVTFIP 209
              ++ V + P
Sbjct: 123 NYDKLIVVYAP 133

>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24) (Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga Maritima At 2.60 A Resolution Length = 192

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 78  IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           +IG+TG I +GKST+ + L+   GA ++N D++GH   +      + + ELFG  + L D
Sbjct: 14  VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE---EVKEKLVELFGGSV-LED 69
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
           G ++RKKL  IVF +++ + KL   + PL   +V+E I + S    +IVIEAA LL    
Sbjct: 70  GKVNRKKLAGIVFESRENLKKLELLVHPLXKKRVQEIINKTS---GLIVIEAA-LLKRXG 125
Query: 197 QDQVHEIWVTFIPEQE 212
            DQ+ +  +T +  +E
Sbjct: 126 LDQLCDHVITVVASRE 141

>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With Adenosine-5'- Diphosphate Length = 218

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           YI+ LTGGI SGKST+A     LG  +I+ D +  +  + G      + + FG ++   D
Sbjct: 5   YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAAD 64
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
           G++ R+ L   +F+N +E N LN  + PLI
Sbjct: 65  GTLQRRALRERIFANPEEKNWLNALLHPLI 94

>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli Norteast Structural Genomics Consortium Target Er57 Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           YI+ LTGGI SGKST+A     LG  +I+ D +  +  + G      + + FG +    D
Sbjct: 3   YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAAD 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
           G++ R+ L   +F+N +E N LN  + PLI
Sbjct: 63  GTLQRRALRERIFANPEEKNWLNALLHPLI 92

>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From Escherichia Coli Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           YI+ LTGGI SGKST+A     LG  +I+ D +  +  + G      + + FG +    D
Sbjct: 3   YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAAD 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
           G++ R+ L   +F+N +E N LN  + PLI
Sbjct: 63  GTLQRRALRERIFANPEEKNWLNALLHPLI 92

>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp Length = 206

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
           YI+GLTGGI SGK+TIA     LG  L++ D +        +     + E FG  I    
Sbjct: 3   YIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQ 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186
           G ++R  L   VF++ ++   LN  + P I  ++K+++A  +  + + V+
Sbjct: 63  GELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV 112

>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus Length = 203

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 71  HLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130
           H + +P IIG+TG I SGKST+A  L + G  +++ D L  RA +      + ++ LF E
Sbjct: 3   HEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARE---NKEEELKRLFPE 59
Query: 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190
             A+  G +DR+ L  +VFS+ + +  L   + P +   + EE++       ++ +E  +
Sbjct: 60  --AVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLXEELS--RLEAPLVFLEIPL 115
Query: 191 LLSAKWQDQVHEIWVTFIPEQE 212
           L    W+ ++H   +   P +E
Sbjct: 116 LFEKGWEGRLHGTLLVAAPLEE 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	6e-81
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	9e-49
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	1e-45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	1e-44
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	3e-44
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	5e-42
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	6e-10
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	6e-04

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Length = 281

 Score =  241 bits (618), Expect = 6e-81
 Identities = 89/201 (44%), Positives = 121/201 (60%), Gaps = 2/201 (0%)

Query: 13  VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHL 72
           + VN  R+ N  + L +  + LL  D   +E EEDK+SSS+ R R LG L +P   +P L
Sbjct: 13  MAVNRFRLENGKEELALYQIQLLK-DQSHNENEEDKVSSSSFRQRILGNLLQPPNERPEL 71

Query: 73  SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI 132
               Y++GLTG   SGKS++A+ L+ LGA +I+ D LGHRAY  G    Q V E FG DI
Sbjct: 72  PSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDI 131

Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SESHKVIVIEAAVL 191
              DG+I+RK LG+ VF NK +M  L   +WP+I    +EE+    ++   + VI+AA+L
Sbjct: 132 LHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML 191

Query: 192 LSAKWQDQVHEIWVTFIPEQE 212
           L A WQ  VHE+W   IPE E
Sbjct: 192 LEAGWQSMVHEVWTVVIPETE 212

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Length = 204

 Score =  157 bits (399), Expect = 9e-49
 Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 77  YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
             IGLTG I  GKST+A+    LGA +++ D+L H  Y  G    + V + FG+ I   +
Sbjct: 2   KRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEE 61

Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
           G+IDRKKL  IVF +++++ KL +     +  ++++    LSE   + ++EA++L+    
Sbjct: 62  GNIDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSE-DTLFILEASLLVEKGT 120

Query: 197 QDQVHEIWVTFIPEQ 211
                ++ V + P +
Sbjct: 121 YKNYDKLIVVYAPYE 135

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Length = 192

 Score =  148 bits (377), Expect = 1e-45
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 8/145 (5%)

Query: 69  KPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVREL 127
           K H   +  +IG+TG I +GKST+ + L+   GA ++N D++GH   +      + + EL
Sbjct: 5   KIHHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVK---EKLVEL 61

Query: 128 FGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE 187
           FG  + L DG ++RKKL  IVF +++ + KL   + PL+  +V+E I +   +  +IVIE
Sbjct: 62  FGGSV-LEDGKVNRKKLAGIVFESRENLKKLELLVHPLMKKRVQEIINK---TSGLIVIE 117

Query: 188 AAVLLSAKWQDQVHEIWVTFIPEQE 212
           AA+L           +       + 
Sbjct: 118 AALLKRMGLDQLCDHVITVVASRET 142

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Length = 206

 Score =  146 bits (371), Expect = 1e-44
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
            YI+GLTGGI SGK+TIA     LG  L++ D +        +     + E FG  I   
Sbjct: 2   TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE 61

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
            G ++R  L   VF++ ++   LN  + P I  ++K+++A   ++    +    +L+  K
Sbjct: 62  QGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENK 119

Query: 196 WQDQVHEIWVTFIPEQ 211
                  I V  +  Q
Sbjct: 120 LTALCDRILVVDVSPQ 135

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Length = 218

 Score =  146 bits (370), Expect = 3e-44
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
            YI+ LTGGI SGKST+A     LG  +I+ D +  +  + G      + + FG ++   
Sbjct: 4   RYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAA 63

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           DG++ R+ L   +F+N +E N LN  + PLI  + + +I +   +   ++    +L+   
Sbjct: 64  DGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS 121

Query: 196 WQDQVHEIWVTFIPEQ 211
              + + + V  +  +
Sbjct: 122 LYKKANRVLVVDVSPE 137

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Length = 203

 Score =  139 bits (354), Expect = 5e-42
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 71  HLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130
           H + +P IIG+TG I SGKST+A  L + G  +++ D L  RA +        ++ LF E
Sbjct: 3   HEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEE---LKRLFPE 59

Query: 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190
            +    G +DR+ L  +VFS+ + +  L   + P +   + EE++RL     ++ +E  +
Sbjct: 60  AVV--GGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRL--EAPLVFLEIPL 115

Query: 191 LLSAKWQDQVHEIWVTFIPEQ 211
           L    W+ ++H   +   P +
Sbjct: 116 LFEKGWEGRLHGTLLVAAPLE 136

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 2   LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59
           L+VS ET    +K+N+ R     + + +V V        +  ++   +SS+ ++  E+
Sbjct: 90  LVVSPETYEMALKINQKREELGKRKITIVKVDW------MMAEDGKPISSTRIKRGEI 141

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 54.9 bits (132), Expect = 8e-10
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 78  IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           +I +TG   SGKS  AK L+  GA +I    +  +             E    +  +   
Sbjct: 3   VILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKR---------YSIEAKPGERLMDFA 53

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLIL-------AQVKEEIARLSESHKVIVIEA 188
              R+  G  V +    + +L  +   L++       A+V+E    L +S  ++ + +
Sbjct: 54  KRLREIYGDGVVARL-CVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHS 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 51/183 (27%)

Query: 43  EQEEDKLSSSN--------LRMRELGTLRKPVQPKPHLSPYPYII--GLTGGIASGKSTI 92
            ++ D+L + N         R++    LR+ +     L P   ++  G+ G   SGK+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLG---SGKTWV 166

Query: 93  AKYLETLGAGLINCDQLGHRAYDVGTR-GNQV--VRELFGEDIALPDGSIDR-KKLGAIV 148
           A  L+               +Y V  +   ++  +        + P+  ++  +KL   +
Sbjct: 167 A--LDVC------------LSYKVQCKMDFKIFWLN--LKNCNS-PETVLEMLQKLLYQI 209

Query: 149 FSNKDEMNKLNQAIWPLILAQVKEEIARL--SESHKVIVIEAAVLLSAKWQDQV--HEIW 204
             N    +  +  I  L +  ++ E+ RL  S+ ++  ++   VL        V   + W
Sbjct: 210 DPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLL---VL------LNVQNAKAW 259

Query: 205 VTF 207
             F
Sbjct: 260 NAF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 44/192 (22%)

Query: 20  VANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMR--ELGTLRKPVQPKPHLSPYPY 77
           V + L       + L      +   E   L    L  R  +L     P +        P 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTN---PR 328

Query: 78  IIGLTGG-IASGKSTIAKYLETLGAGLINCDQLGH---RAYDVGTRGNQVVRELFGEDIA 133
            + +    I  G +T   +        +NCD+L      + +V        R++F + ++
Sbjct: 329 RLSIIAESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAEY--RKMF-DRLS 379

Query: 134 -LPDGS-IDRKKLGAIVFSNKDE------MNKLNQ----AIWP--------LILAQVKEE 173
             P  + I    L ++++ +  +      +NKL++       P         I  ++K +
Sbjct: 380 VFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 174 IARLSESHKVIV 185
           +      H+ IV
Sbjct: 439 LENEYALHRSIV 450

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99
           P   ++ L+G   SGKST++  L   
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	100.0
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.97
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.92
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.91
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.86
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.84
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.78
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.54
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.5
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.5
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.48
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.46
1g6h_A	257	High-affinity branched-chain amino acid transport	99.45
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.45
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.45
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.44
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.44
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.44
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.44
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.43
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.43
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.41
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.41
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.4
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.39
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.39
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.38
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.37
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.37
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.36
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.36
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.36
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.35
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.34
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.33
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.33
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.32
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.3
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.29
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.29
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.26
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.26
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.25
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.23
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.21
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.21
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.19
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.18
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.18
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.18
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.17
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.15
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.15
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.14
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.13
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.12
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.09
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.09
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.04
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.98
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.96
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.95
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.92
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.91
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	98.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.89
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.88
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.84
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.82
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.82
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.81
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.81
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.79
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.78
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.74
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.67
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.65
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.64
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.61
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.59
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.57
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.56
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.55
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.54
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.53
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.53
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.52
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.51
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.51
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.51
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.49
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.49
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.48
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.48
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.47
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.47
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.46
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.46
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.44
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.44
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.44
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.42
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.4
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.38
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.37
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.36
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.35
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.32
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.32
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.31
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.3
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.29
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.28
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.28
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.28
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.28
1via_A	175	Shikimate kinase; structural genomics, transferase	98.25
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.25
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.24
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.24
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.22
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.21
2og2_A	359	Putative signal recognition particle receptor; nuc	98.19
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.19
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.19
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.18
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.17
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.17
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.16
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.15
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.15
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.12
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.11
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.1
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.09
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.09
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.08
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.08
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.07
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.03
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.02
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.02
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.0
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.99
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.98
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.96
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.95
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.93
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.93
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.92
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.92
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.91
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.91
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.9
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.86
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.86
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.86
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.85
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.85
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.84
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.83
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.82
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.81
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.81
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.81
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.81
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.8
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.79
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.77
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.74
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.72
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.69
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.68
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.67
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.67
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.67
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.65
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.65
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.64
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.63
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.6
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.6
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.57
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.54
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.52
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.52
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.5
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.49
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.46
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.45
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.4
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.39
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.39
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.38
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.38
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.37
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.36
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.36
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.35
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.35
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.34
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.3
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.28
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.26
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.24
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.23
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.23
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.22
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.21
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.19
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.19
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.17
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.15
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.14
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.13
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.12
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.1
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.08
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.07
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.06
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.06
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.03
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.02
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.0
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.99
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.98
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.98
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.98
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.96
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.94
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.89
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.88
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.87
3bos_A	242	Putative DNA replication factor; P-loop containing	96.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.87
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.86
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.86
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.84
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.83
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.83
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.82
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.82
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.81
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.8
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.79
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.79
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.78
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.76
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.76
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.75
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.75
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.73
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.73
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.73
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.73
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.7
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.69
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.69
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.68
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.68
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.66
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.65
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.64
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.64
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.64
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.64
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.61
3ice_A	422	Transcription termination factor RHO; transcriptio	96.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.6
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.6
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.6
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.6
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.6
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.59
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.59
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.59
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.58
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.58
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.58
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.58
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.58
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.57
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.56
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.56
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.55
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.55
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.54
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.54
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.54
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.53
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.52
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.52
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.52
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.52
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.52
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.52
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.51
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.51
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.51
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.5
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.5
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.49
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.49
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.48
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.48
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.48
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.47
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.46
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.46
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.45
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.45
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.45
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.44
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.44
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.43
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.43
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.42
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.42
2xxa_A	433	Signal recognition particle protein; protein trans	96.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.42
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.42
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.4
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.4
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.37
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.37
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.37
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.36
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.35
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.34
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.34
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.34
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.33
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.33
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.31
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.3
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.3
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.3
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.3
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.3
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.3
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.29
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.29
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.29
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.28
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.28
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.26
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.25
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.25
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.25
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.25
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.24
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.24
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.23
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.23
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.2
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.19
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.16
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.16
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.15
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.13
3end_A	307	Light-independent protochlorophyllide reductase ir	96.12
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.11
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.11
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.11
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.1
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.1
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.09
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.09
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.08
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.08
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.07
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.06
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.06
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	96.06
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.05
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.05
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.05
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.03
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.03
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.03
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.02
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.02
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.99
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.98
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.95
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.95
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.9
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.89
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.89
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.88
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.87
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.85
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.8
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.77
3co5_A	143	Putative two-component system transcriptional RES	95.76
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.7

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=100.00  E-value=1.6e-34  Score=242.71  Aligned_cols=198  Identities=44%  Similarity=0.721  Sum_probs=150.6

Q ss_pred             HHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHH
Q psy17138         13 VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTI   92 (212)
Q Consensus        13 ~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl   92 (212)
                      .++|+.|.||||++|++++|.++. ++++++..+.++|+++.|+..+|+.+.++...+..+.++++|+|+|++||||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTv   91 (281)
T 2f6r_A           13 MAVNRFRLENGKEELALYQIQLLK-DQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELPSGLYVLGLTGISGSGKSSV   91 (281)
T ss_dssp             ---------------CCCCCCEEC-C-----------------CEETTSCCSCCCCCTTSCTTCEEEEEEECTTSCHHHH
T ss_pred             HHhhHHHHHCCCCcceEEEEEeec-CCCcccccceeecchHHHHHHHHHHhCCccccccCCCCCEEEEEECCCCCCHHHH
Confidence            479999999999999999999999 7777788899999999999999999999876667788899999999999999999


Q ss_pred             HHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHHHHhhhhHHHHHHHHH
Q psy17138         93 AKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus        93 ~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~  172 (212)
                      ++.|+.+|++++++|.+.++.+.++...+..+...||..++..+|.++|..++..+|.++..+.+++.+++|.+...+.+
T Consensus        92 a~~La~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~~P~i~~~~~~  171 (281)
T 2f6r_A           92 AQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLARE  171 (281)
T ss_dssp             HHHHHHHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhcccChHHHHHHHH
Confidence            99999999999999999999999988888888999999888777889999999999999999999999999999988887


Q ss_pred             HHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        173 EIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       173 ~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+.+.. .+..++++|++++++.+|..+||.+|+++||++
T Consensus       172 ~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~e  211 (281)
T 2f6r_A          172 EMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPET  211 (281)
T ss_dssp             HHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred             HHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHH
Confidence            776544 445799999999999889899999999999975

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.97  E-value=3.2e-31  Score=213.36  Aligned_cols=137  Identities=29%  Similarity=0.528  Sum_probs=129.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~  152 (212)
                      ...++-|||||++||||||++++|+.+|++++|+|.++|+++.++...+..+...||..++..+|.+||..|++.+|+||
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~   85 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE   85 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence            45689999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        153 DEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       153 ~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                      ..+.++++++||.++.++.+++.+  .+..++++|+|+|+| .+|.++||.+|+|+||++
T Consensus        86 ~~~~~L~~i~HP~I~~~~~~~~~~--~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e  143 (210)
T 4i1u_A           86 DARRRLEAITHPLIRAETEREARD--AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVD  143 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT--CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHh--cCCCEEEEEEecccccCCccccCCeEEEEECCHH
Confidence            999999999999999999998876  345789999999999 999999999999999975

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.92  E-value=4.4e-25  Score=175.59  Aligned_cols=132  Identities=33%  Similarity=0.553  Sum_probs=119.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~  151 (212)
                      ...-++|||+|++||||||+++.|+.. |++++++|.+.++.+.+   .++.+...||..++. +|.++|..|+..+|.+
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~   84 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLE-DGKVNRKKLAGIVFES   84 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBS-SSSBCHHHHHHHHTTC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcC-CCCcCHHHHHHHHhCC
Confidence            345689999999999999999999976 99999999999998876   567888999999988 8899999999999999


Q ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        152 KDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       152 ~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +..+.++++++||.++..+..++...   ..++++|+|++++.+|.++||.+|+|+||++
T Consensus        85 ~~~~~~l~~i~hP~i~~~~~~~~~~~---~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e  141 (192)
T 2grj_A           85 RENLKKLELLVHPLMKKRVQEIINKT---SGLIVIEAALLKRMGLDQLCDHVITVVASRE  141 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC---CEEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred             HHHHHHHHhhhCHHHHHHHHHHHHHc---CCEEEEEEeceeecChHHhCCEEEEEECCHH
Confidence            99999999999999999988777642   4699999999999999999999999999975

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.91  E-value=9.7e-24  Score=168.22  Aligned_cols=134  Identities=28%  Similarity=0.447  Sum_probs=115.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      +.+|||+|++||||||++++|+++|++++++|.+.++++.++...+..+...||..++..++..+|..++..+|+++..+
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHCCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            46899999999999999999999999999999999888888777888899999998877678899999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+++++++|.+++.+.+.+...  ....+++++|++.+.+|...||.+|++++|++
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e  135 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDVSPQ  135 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEECCHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEECCHH
Confidence            9999999999999988877653  24589999999999888899999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.86  E-value=6.7e-22  Score=157.15  Aligned_cols=134  Identities=31%  Similarity=0.513  Sum_probs=117.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN  156 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~  156 (212)
                      .+|+|+|++||||||+++.|+++|++++++|.+.++.+.++...++.+...+|..++..++..+|..++..+|+++..+.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~   81 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLR   81 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHTTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHCCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHH
Confidence            57999999999999999999999999999999988888777677788888899887655678899999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +++.+.+|.+...+.+.+.... +..++++|++++++.+|..+||.+|++++|++
T Consensus        82 ~l~~l~~~~v~~~~~~~~~~~~-~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e  135 (204)
T 2if2_A           82 KLEEITHRALYKEIEKITKNLS-EDTLFILEASLLVEKGTYKNYDKLIVVYAPYE  135 (204)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHSC-TTCCEEEECSCSTTTTCGGGSSEEEEECCCHH
T ss_pred             HHHHhhCHHHHHHHHHHHHhcc-CCCEEEEEccccccCCchhhCCEEEEEECCHH
Confidence            9999999999988887776532 22689999999999888889999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.84  E-value=2.4e-20  Score=149.86  Aligned_cols=135  Identities=27%  Similarity=0.506  Sum_probs=117.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDE  154 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~  154 (212)
                      ++.+|+|+|++||||||+++.|+++|++++++|.+.++.+.++......+...+|...+..++.+++..++..+|+++..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~   82 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE   82 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHH
Confidence            46899999999999999999999999999999999998887777677888889998887666778999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +.+++++++|.+...+...+...  ...+++++.+++++.+|...+|.+|++++|++
T Consensus        83 ~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e  137 (218)
T 1vht_A           83 KNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENSLYKKANRVLVVDVSPE  137 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred             HHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccCccccCCEEEEEECCHH
Confidence            99999999999988877666542  34578899999998878889999999999865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.78  E-value=5.1e-19  Score=139.77  Aligned_cols=131  Identities=28%  Similarity=0.541  Sum_probs=105.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~  152 (212)
                      ..++.+|+|+|++||||||+++.|+..|++++++|.+.+..+ ++..  ..+...| ...+. ++.+++..++..+|.++
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~g~~~id~d~~~~~~~-~~~~--~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~~   79 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARAR-ENKE--EELKRLF-PEAVV-GGRLDRRALARLVFSDP   79 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHTTCCEEEHHHHHHHHH-HHTH--HHHHHHC-GGGEE-TTEECHHHHHHHHTTSH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHCCCEEEcccHHHHHhc-CChH--HHHHHHH-HHHHh-CCCcCHHHHHHHHhCCH
Confidence            456889999999999999999999988999999998877765 3322  4555666 55554 67789999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        153 DEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       153 ~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ..+.+++.+.+|.+.   .+.+.... .+..+++++++++++.+|...+|.+|++++|.+
T Consensus        80 ~~~~~l~~~~~~~i~---~~~i~~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e  136 (203)
T 1uf9_A           80 ERLKALEAVVHPEVR---RLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLE  136 (203)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHH
T ss_pred             HHHHHHHHHhChHHH---HHHHHHhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHH
Confidence            988888888999886   23344333 346799999999998888888999999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.54  E-value=8.2e-16  Score=132.85  Aligned_cols=159  Identities=17%  Similarity=0.153  Sum_probs=113.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++.+++|...+....+++++++...+|+++||+||||||||||+|+|+++     |...++...+.           
T Consensus        25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r  104 (366)
T 3tui_C           25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR  104 (366)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            45777777775433334578889999999999999999999999999999997     33344432221           


Q ss_pred             ccc-cc-------CCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH-
Q psy17138        111 HRA-YD-------VGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ~~~-~~-------~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~-  153 (212)
                      +.+ |.       +..                     .....+++.+|..-..       +.|+.+|..|+..+.++|+ 
T Consensus       105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l  184 (366)
T 3tui_C          105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV  184 (366)
T ss_dssp             TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE
T ss_pred             CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            000 10       100                     0123445556653221       3367789999999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.++++. .....+++-+|.+.++  ..+||+++++.
T Consensus       185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~--~~~aDrv~vl~  238 (366)
T 3tui_C          185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV--KRICDCVAVIS  238 (366)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence             5688999999999999999998875 3356777779999775  57899999885

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.50  E-value=3.6e-15  Score=128.62  Aligned_cols=154  Identities=15%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------ccc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GHR  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~~  112 (212)
                      .+++.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+          .+.
T Consensus         6 ~i~~ls~~y~~----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~   81 (359)
T 3fvq_A            6 HIGHLSKSFQN----TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR   81 (359)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred             EEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence            46666677742    2467788899999999999999999999999999997     3333332211          000


Q ss_pred             c-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138        113 A-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      + |       .+.-                     .....+++.+|..-+.       +.|+.+|-.|+..+..+|+  +
T Consensus        82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL  161 (359)
T 3fvq_A           82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL  161 (359)
T ss_dssp             CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            0 0       0000                     1233455566654321       3467789999999999998  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.++|..+..+.+.+.+.. .....+++-+|.+.++  ..+||+++++.
T Consensus       162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea--~~~aDri~vl~  213 (359)
T 3fvq_A          162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA--LQYADRIAVMK  213 (359)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--HHHCSEEEEEE
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHCCEEEEEE
Confidence            688999999999999987765543 3456777779999886  47899999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.50  E-value=4.8e-15  Score=123.70  Aligned_cols=155  Identities=12%  Similarity=0.125  Sum_probs=108.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~  112 (212)
                      .+.+.+++|...   ...++++++...+|++++|+||||||||||+++|+++     |...++...+.          +.
T Consensus         9 ~i~~ls~~y~~~---~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            9 KVEELNYNYSDG---THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEECTTS---CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             EEEEEEEEECCC---CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence            466666666421   1367778899999999999999999999999999987     33334332220          00


Q ss_pred             -cccCC--------ch---------------------hHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138        113 -AYDVG--------TR---------------------GNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       113 -~~~~~--------~~---------------------~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--  153 (212)
                       .|.++        ..                     .....++.+|..-+.       +.|+.+|..|+..+..+|+  
T Consensus        86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL  165 (275)
T 3gfo_A           86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  165 (275)
T ss_dssp             EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence             01110        00                     122334555543221       3467788999999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.++|.....+.+.++++. .....+++-+|.+.++  ..+||+++++.
T Consensus       166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~--~~~~drv~~l~  218 (275)
T 3gfo_A          166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV--PLYCDNVFVMK  218 (275)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG--GGGCSEEEEEE
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            5688999999999999999988775 3356777789999775  47899999885

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.48  E-value=3.1e-15  Score=124.32  Aligned_cols=154  Identities=13%  Similarity=0.066  Sum_probs=107.5

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------  111 (212)
                      .+.+.+++|..    ...++++++...+|+++||+||||||||||+++|+++     |...++...+..           
T Consensus        13 ~~~~l~~~~~~----~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           13 EASHLHYHVQQ----QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             EEEeEEEEeCC----eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            45555565532    2456778899999999999999999999999999987     333443322110           


Q ss_pred             ------ccccC---------------C---chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcC------ChH-
Q psy17138        112 ------RAYDV---------------G---TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFS------NKD-  153 (212)
Q Consensus       112 ------~~~~~---------------~---~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~------~~~-  153 (212)
                            .++.+               .   ........+.+|..-+.       +.|+.+|-.|+..+.+      +|+ 
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l  168 (266)
T 4g1u_C           89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW  168 (266)
T ss_dssp             EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred             EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence                  00000               0   01233445566643221       3467788899998888      888 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.++++. .+...+++-+|.+.++  ..+||+++++.
T Consensus       169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~--~~~~d~v~vl~  222 (266)
T 4g1u_C          169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA--ALYADRIMLLA  222 (266)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence             5688999999999999999998875 4455788889999775  46899999885

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.47  E-value=3.5e-15  Score=129.57  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=109.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc---
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA---  113 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~---  113 (212)
                      .+++.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.+   
T Consensus         5 ~~~~l~~~yg~----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V   80 (381)
T 3rlf_A            5 QLQNVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV   80 (381)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred             EEEeEEEEECC----EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence            46667777742    2467788999999999999999999999999999997     33334332211      000   


Q ss_pred             -----ccCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138        114 -----YDVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       114 -----~~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                           +.+.-                     .....+++.+|...+.       +.|+.+|-.|+..+..+|+  +++++
T Consensus        81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP  160 (381)
T 3rlf_A           81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP  160 (381)
T ss_dssp             CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred             ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                 01110                     1123445555654321       3467789999999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++..+..+.+.++++. .....+++-+|.+.++  ..+||+++++.
T Consensus       161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~~aDri~vl~  208 (381)
T 3rlf_A          161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA--MTLADKIVVLD  208 (381)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            99999999999999988775 3245677779999875  57999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.46  E-value=9.8e-15  Score=120.64  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=109.8

Q ss_pred             cccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------
Q psy17138         43 EQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------  110 (212)
Q Consensus        43 ~~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------  110 (212)
                      .+....+.+.+++|..    ...++++++...+|.+++|+||||||||||+++|+++     |...++...+.       
T Consensus        12 ~~~~l~i~~l~~~y~~----~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~   87 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR   87 (256)
T ss_dssp             --CCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred             cCCeEEEEEEEEEECC----EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHh
Confidence            3455567777777742    2356778899999999999999999999999999987     32333321110       


Q ss_pred             cc-cccCCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        111 HR-AYDVGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       111 ~~-~~~~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      +. .|.++.                            .....+++.+|..-.       -+.|+.+|..++..+.++|+ 
T Consensus        88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l  167 (256)
T 1vpl_A           88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL  167 (256)
T ss_dssp             TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred             hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            00 011110                            012234455554321       13467788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.+.++......+++.+|.+.+.  ..+||+++++.
T Consensus       168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~--~~~~d~v~~l~  220 (256)
T 1vpl_A          168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV--EFLCDRIALIH  220 (256)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH--TTTCSEEEEEE
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HHHCCEEEEEE
Confidence             56899999999999999999988753356778889998764  46899999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.45  E-value=2.9e-14  Score=117.81  Aligned_cols=155  Identities=13%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~  112 (212)
                      ..+++.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.         +.
T Consensus         8 l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   83 (257)
T 1g6h_A            8 LRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   83 (257)
T ss_dssp             EEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEeeeEEEECC----EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            346666666632    1357788999999999999999999999999999987     22233221110         00


Q ss_pred             c-ccC------------------------C-------------c----hhHHHHHHHhCCccCC-------CCCccchHh
Q psy17138        113 A-YDV------------------------G-------------T----RGNQVVRELFGEDIAL-------PDGSIDRKK  143 (212)
Q Consensus       113 ~-~~~------------------------~-------------~----~~~~~~~~~~g~~~~~-------~~~~~~r~~  143 (212)
                      + |.+                        +             .    .....+++.+|..-..       +.|+.+|-.
T Consensus        84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~  163 (257)
T 1g6h_A           84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE  163 (257)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence            0 000                        0             0    0123344555543211       236778889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+.++|+  +++++.+.++|.....+.+.++++......+++-+|.+.+.  ..+||+++++.
T Consensus       164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~  227 (257)
T 1g6h_A          164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV--LNYIDHLYVMF  227 (257)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT--GGGCSEEEEEE
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9999999998  56889999999999999999988763356777889998764  47899999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.45  E-value=8.8e-15  Score=119.39  Aligned_cols=156  Identities=12%  Similarity=0.043  Sum_probs=104.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~  111 (212)
                      +.+.+++|.........++++++...+|++++|+||||||||||+++|+++     |...++...+.            +
T Consensus         4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   83 (235)
T 3tif_A            4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD   83 (235)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence            444555553221122456778899999999999999999999999999987     33333332110            0


Q ss_pred             -ccccCC-------ch------------------------hHHHHHHHhCCcc-C-C------CCCccchHhHHHHhcCC
Q psy17138        112 -RAYDVG-------TR------------------------GNQVVRELFGEDI-A-L------PDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       112 -~~~~~~-------~~------------------------~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~vf~~  151 (212)
                       -.|.++       ..                        ........+|..- . +      +.|+.+|-.++..+.++
T Consensus        84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~  163 (235)
T 3tif_A           84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN  163 (235)
T ss_dssp             HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence             001000       00                        1123344455321 1 1      23677788999999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++.+.++|.....+.+.+.++. .....+++-+|.+..   ..+||+++++.
T Consensus       164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~---~~~~d~i~~l~  219 (235)
T 3tif_A          164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV---ARFGERIIYLK  219 (235)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH---HTTSSEEEEEE
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH---HHhCCEEEEEE
Confidence            98  5689999999999999999998875 325677777999853   26899999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.45  E-value=1.1e-14  Score=117.88  Aligned_cols=152  Identities=13%  Similarity=0.100  Sum_probs=103.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H  111 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~  111 (212)
                      +.+.+++|..    ...++++++...+|.+++|+||||||||||+++|+++     |...++...+.            +
T Consensus         7 ~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   82 (224)
T 2pcj_A            7 AENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR   82 (224)
T ss_dssp             EEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred             EEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence            4555555532    2356778889999999999999999999999999987     33333321110            0


Q ss_pred             c-cccCCc-------h---------------------hHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138        112 R-AYDVGT-------R---------------------GNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~-~~~~~~-------~---------------------~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--  153 (212)
                      . .|.++.       .                     ....+++.+|..-..       +.|+.+|-.++..+.++|+  
T Consensus        83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (224)
T 2pcj_A           83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL  162 (224)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred             cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            0 011110       0                     112334555543211       2356778899999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.++|.....+.+.+.++......+++.+|.+.++   .+||+++++.
T Consensus       163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~v~~l~  213 (224)
T 2pcj_A          163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA---ELTHRTLEMK  213 (224)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH---TTSSEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH---HhCCEEEEEE
Confidence            56889999999999999999988762356777789997653   5899999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.44  E-value=1.5e-14  Score=119.90  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=106.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~  111 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+.          +
T Consensus        25 l~i~~l~~~y~~----~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~  100 (263)
T 2olj_A           25 IDVHQLKKSFGS----LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE  100 (263)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred             EEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence            345666666631    1356778899999999999999999999999999987     33333321110          0


Q ss_pred             c-cccCCc-------h----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138        112 R-AYDVGT-------R----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       112 ~-~~~~~~-------~----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      . .|.++.       .                      ....+++.+|..-.       -+.|+.+|..++..+.++|+ 
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l  180 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI  180 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence            0 011110       0                      11233445554321       12366778899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.++++......+++.+|.+.++  ..+||+++++.
T Consensus       181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~  233 (263)
T 2olj_A          181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA--REVGDRVLFMD  233 (263)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence             56899999999999999999988753356778889998764  46899999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.44  E-value=2.6e-14  Score=123.91  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=108.7

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y  114 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~  114 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.+ |
T Consensus        12 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   87 (372)
T 1v43_A           12 VKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM   87 (372)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred             EEEEEEEEEECC----EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence            345666666632    2356778899999999999999999999999999987     33333321110      000 0


Q ss_pred             -------cCC-----------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138        115 -------DVG-----------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK  157 (212)
Q Consensus       115 -------~~~-----------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~  157 (212)
                             .+.                 .    .....+++.+|..-+       -+.|+.+|..|+..+..+|+  ++++
T Consensus        88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE  167 (372)
T 1v43_A           88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE  167 (372)
T ss_dssp             EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                   000                 0    113345566665322       14578889999999999998  5688


Q ss_pred             HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~  216 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA--MTMGDRIAVMN  216 (372)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999999999999999988775 3245677779998775  47899999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.44  E-value=2e-14  Score=123.93  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=110.5

Q ss_pred             ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc
Q psy17138         44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR  112 (212)
Q Consensus        44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~  112 (212)
                      .....+.+.+++|.  + ....++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.
T Consensus        12 ~~~l~~~~l~~~y~--g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~   88 (355)
T 1z47_A           12 SMTIEFVGVEKIYP--G-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN   88 (355)
T ss_dssp             CEEEEEEEEEECCT--T-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred             CceEEEEEEEEEEc--C-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence            33456777777772  1 12456778899999999999999999999999999987     33333322110      00


Q ss_pred             c-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138        113 A-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      + |       .+.-                     .....+++.+|..-+.       +.|+.+|..|+..+..+|+  +
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  168 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL  168 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            0 0       0100                     0123445556653221       3467789999999999998  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~  220 (355)
T 1z47_A          169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA--LEVADRVLVLH  220 (355)
T ss_dssp             EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            688899999999999999988775 3245777779998875  47899999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.44  E-value=2.8e-14  Score=123.30  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y-  114 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~-  114 (212)
                      .+.+.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.+ | 
T Consensus         5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v   80 (362)
T 2it1_A            5 KLENIVKKFGN----FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV   80 (362)
T ss_dssp             EEEEEEEESSS----SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred             EEEeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence            35566666631    2356778899999999999999999999999999997     33334322110      000 1 


Q ss_pred             ------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138        115 ------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       115 ------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                            .+.-                     ....++++.+|..-+.       +.|+.+|..|+..+..+|+  +++++
T Consensus        81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  160 (362)
T 2it1_A           81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP  160 (362)
T ss_dssp             CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred             ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence                  0110                     0123445556653221       3367788999999999998  56899


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~  208 (362)
T 2it1_A          161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA--LAMADRIAVIR  208 (362)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence            99999999999999998775 3245677779998775  47899999885

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.43  E-value=1.7e-14  Score=124.57  Aligned_cols=154  Identities=14%  Similarity=0.048  Sum_probs=107.7

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y-  114 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~-  114 (212)
                      .+++.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.+ | 
T Consensus         5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v   80 (359)
T 2yyz_A            5 RVVNLKKYFGK----VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV   80 (359)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred             EEEEEEEEECC----EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence            35566666631    2356778899999999999999999999999999997     33333321110      000 0 


Q ss_pred             ------cCC---------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138        115 ------DVG---------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       115 ------~~~---------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                            .+.                     ......+++.+|..-+.       +.|+.+|..|+..+..+|+  +++++
T Consensus        81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP  160 (359)
T 2yyz_A           81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP  160 (359)
T ss_dssp             CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                  000                     01234556666654221       3467789999999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~--~~~adri~vl~  208 (359)
T 2yyz_A          161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA--MTMASRIAVFN  208 (359)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            99999999999999988775 3245777779998775  47899999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.43  E-value=1.1e-14  Score=120.79  Aligned_cols=154  Identities=17%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------  110 (212)
                      .+.+.+++|..    ...++++++...+|.+++|+||||||||||+++|+++     |...++...+.            
T Consensus         8 ~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            8 HVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             EEeeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence            35566666631    1356778899999999999999999999999999987     33333321111            


Q ss_pred             ---------ccc-ccCCc-------h----------------------hHHHHHHHhCCccC--C------CCCccchHh
Q psy17138        111 ---------HRA-YDVGT-------R----------------------GNQVVRELFGEDIA--L------PDGSIDRKK  143 (212)
Q Consensus       111 ---------~~~-~~~~~-------~----------------------~~~~~~~~~g~~~~--~------~~~~~~r~~  143 (212)
                               +.+ |.++.       .                      ....+++.+|..-.  +      +.|+.+|..
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~  163 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  163 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence                     000 11100       0                      11233444554321  1      235677889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+.++|+  +++++.+.++|.....+.+.++++......+++.+|.+.++  ..+||+++++.
T Consensus       164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~  227 (262)
T 1b0u_A          164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLH  227 (262)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999999998  56889999999999999999988753355677779998764  46899999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.41  E-value=2.8e-14  Score=122.71  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c--
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y--  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~--  114 (212)
                      +.+.+++|.   ..  .++++++...+|++++|+||||||||||+|+|+++     |...++...+.      +.+ |  
T Consensus         4 ~~~l~~~y~---~~--~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   78 (348)
T 3d31_A            4 IESLSRKWK---NF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (348)
T ss_dssp             EEEEEEECS---SC--EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             EEEEEEEEC---CE--EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence            445555553   11  56778889999999999999999999999999997     33334322110      000 1  


Q ss_pred             -----cCCc------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138        115 -----DVGT------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI  162 (212)
Q Consensus       115 -----~~~~------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~  162 (212)
                           .+.-                  .....+++.+|..-+.       +.|+.+|-.|+..+..+|+  +++++.+.+
T Consensus        79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L  158 (348)
T 3d31_A           79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL  158 (348)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred             cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence                 0110                  1223445556643221       3367788899999999998  568889999


Q ss_pred             hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~--~~~adri~vl~  202 (348)
T 3d31_A          159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEA--RIMADRIAVVM  202 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHCSEEEEES
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999999999998875 3355777779998775  47899999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.41  E-value=3e-14  Score=123.62  Aligned_cols=154  Identities=17%  Similarity=0.121  Sum_probs=106.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------  111 (212)
                      .+++.+++|..    ...++++++...+|++++|+||||||||||+|+|+++     |...++...+..           
T Consensus         5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~   80 (372)
T 1g29_1            5 RLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (372)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             EEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence            35566666631    2356778889999999999999999999999999987     333333211100           


Q ss_pred             -cc-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH-
Q psy17138        112 -RA-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       112 -~~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~-  153 (212)
                       .+ |       .+.-                     .....+++.+|..-+.       +.|+.+|..|+..+..+|+ 
T Consensus        81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l  160 (372)
T 1g29_1           81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV  160 (372)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence             00 1       1110                     0123445556653221       3467788899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       161 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~  214 (372)
T 1g29_1          161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA--MTMGDRIAVMN  214 (372)
T ss_dssp             EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             EEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH--HHhCCEEEEEe
Confidence             5688899999999999999888775 3245677779998775  47899999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.41  E-value=1.9e-13  Score=107.93  Aligned_cols=130  Identities=18%  Similarity=0.121  Sum_probs=83.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccC----C-----chhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDV----G-----TRGNQVVRELFGEDIALPDGSIDRKKLGAI  147 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~----~-----~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~  147 (212)
                      +|+|+|++||||||+++.|++ +|++++++|.+.+....+    +     ...+..+...++..+...++..+....+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999986 799999999887654211    1     124556666666544322221111111112


Q ss_pred             hcCChH---HHHH-HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        148 VFSNKD---EMNK-LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       148 vf~~~~---~~~~-~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +|.+..   +... .....+|.+++.+.+.+++..   ..++++++++. ..+...+|.+|++++|++
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e  147 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRDMG-TAVFPEAAHKFYLTASPE  147 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESSCC-CCCCTTCSEEEEEECCHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEcccee-EEEecCCcEEEEEECCHH
Confidence            222111   1111 113578888888877766543   67899999887 456677999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.40  E-value=4.8e-14  Score=115.40  Aligned_cols=150  Identities=16%  Similarity=0.093  Sum_probs=101.6

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc-cccC
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR-AYDV  116 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~-~~~~  116 (212)
                      +++.+++|..      .++++++...+ .+++|+||||||||||+++|+++     |...++...+.      +. .|.+
T Consensus         4 ~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~   76 (240)
T 2onk_A            4 KVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             EEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             EEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence            4455555531      26778888999 99999999999999999999987     32333321110      00 0111


Q ss_pred             Cc--------------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        117 GT--------------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       117 ~~--------------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                      +.                          .....+++.+|..-..       +.|+.+|..++..+.++|+  +++++.+.
T Consensus        77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~  156 (240)
T 2onk_A           77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA  156 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred             CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            00                          0122344555543211       2356778899999999998  56889999


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++|...+.+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~d~i~~l~  201 (240)
T 2onk_A          157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA--AMLADEVAVML  201 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999999998775 3245677779998764  46899999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.39  E-value=2.2e-14  Score=123.64  Aligned_cols=154  Identities=8%  Similarity=0.074  Sum_probs=106.9

Q ss_pred             ceechhhhhhhhccccC--CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         48 KLSSSNLRMRELGTLRK--PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~--~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      .+++.+++|..    ..  .++++++...+|++++|+||||||||||+|+|+++     |...++...+.          
T Consensus         5 ~i~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~   80 (353)
T 1oxx_K            5 IVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE   80 (353)
T ss_dssp             EEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEeEEEEECC----EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence            35566666632    13  56778899999999999999999999999999987     32333221110          


Q ss_pred             -ccc-c-------cCC---------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH
Q psy17138        111 -HRA-Y-------DVG---------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 -~~~-~-------~~~---------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~  153 (212)
                       +.+ |       .+.                     ......+++.+|..-+.       +.|+.+|..|+..+..+|+
T Consensus        81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~  160 (353)
T 1oxx_K           81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS  160 (353)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence             000 0       000                     01123455566653221       3467789999999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++..+..+.+.++++. .....+++.+|.+.++  ..+||+++++.
T Consensus       161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~--~~~adri~vl~  215 (353)
T 1oxx_K          161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI--FAIADRVGVLV  215 (353)
T ss_dssp             EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence              5688999999999999999888775 3245777779998775  47899999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.39  E-value=2.4e-14  Score=117.14  Aligned_cols=154  Identities=18%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-R  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~  112 (212)
                      .+++.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+.         + -
T Consensus         8 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   83 (240)
T 1ji0_A            8 EVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             EEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence            35566666632    1356778889999999999999999999999999987     22233221110         0 0


Q ss_pred             cccCC------------------------ch---hHHHHHHHhC-CccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138        113 AYDVG------------------------TR---GNQVVRELFG-EDIA-------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       113 ~~~~~------------------------~~---~~~~~~~~~g-~~~~-------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      .|.++                        ..   ....+++.++ ..-.       -+.|+.+|-.++..+.++|+  ++
T Consensus        84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL  163 (240)
T 1ji0_A           84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            01000                        00   1223333342 2111       13457778899999999998  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.++|.....+.+.+++.......+++.+|.+.+.  ..+||+++++.
T Consensus       164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~--~~~~d~v~~l~  213 (240)
T 1ji0_A          164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA--LKVAHYGYVLE  213 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence            889999999999999999987753345677779998654  46899999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.38  E-value=4.4e-14  Score=118.11  Aligned_cols=155  Identities=11%  Similarity=0.079  Sum_probs=105.3

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~  111 (212)
                      ..+.+.+++|..    ...++++++...+|++++|+||||||||||+++|+++     |...++...+.          +
T Consensus        22 l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   97 (279)
T 2ihy_A           22 IQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ   97 (279)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred             EEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence            456666666642    1356778899999999999999999999999999987     33333321111          0


Q ss_pred             cc-cc-------CC------------------------c---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhc
Q psy17138        112 RA-YD-------VG------------------------T---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVF  149 (212)
Q Consensus       112 ~~-~~-------~~------------------------~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf  149 (212)
                      .+ |.       ..                        .   .....+++.+|..-+.       +.|+.+|..++..+.
T Consensus        98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~  177 (279)
T 2ihy_A           98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM  177 (279)
T ss_dssp             TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence            00 00       00                        0   0112334455543211       235677889999999


Q ss_pred             CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEE--EEEeccccccccccccCeEEEEE
Q psy17138        150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVI--VIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~v--vie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+|+  +++++.+.++|...+.+.+.++++......+  ++-+|.+.+.  ..+||+++++.
T Consensus       178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~--~~~~d~v~~l~  237 (279)
T 2ihy_A          178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI--TANFSKILLLK  237 (279)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC--CTTCCEEEEEE
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH--HHhCCEEEEEE
Confidence            9998  5688999999999999999988775223445  6679998764  47899999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.38  E-value=6.2e-14  Score=115.59  Aligned_cols=154  Identities=9%  Similarity=-0.038  Sum_probs=104.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----e-------eeeCC-cc-----c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----G-------LINCD-QL-----G  110 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~-------vi~~D-~i-----~  110 (212)
                      +++.+++|.. +  ...++++++...+|.+++|+||||||||||+++|+++-.     .       ++.-+ .+     .
T Consensus         7 i~~l~~~y~~-~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv   83 (253)
T 2nq2_C            7 VENLGFYYQA-E--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV   83 (253)
T ss_dssp             EEEEEEEETT-T--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred             EeeEEEEeCC-C--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence            4555555531 1  134667888899999999999999999999999998721     1       11111 00     0


Q ss_pred             ccc--cc----------CCc---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        111 HRA--YD----------VGT---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       111 ~~~--~~----------~~~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      .+.  +.          +..   .....+++.+|..-+.       +.|+.+|-.++..+..+|+  +++++.+.++|..
T Consensus        84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~  163 (253)
T 2nq2_C           84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN  163 (253)
T ss_dssp             HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred             HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            000  00          011   1234455666654221       3467788899999999998  5688999999999


Q ss_pred             HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.+.+.+.. .....+++.+|.+.+.  ..+||+++++.
T Consensus       164 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~d~v~~l~  203 (253)
T 2nq2_C          164 QDIVLSLLIDLAQSQNMTVVFTTHQPNQV--VAIANKTLLLN  203 (253)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence            999999998875 3256777889998764  46899999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.37  E-value=2.8e-13  Score=111.41  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=102.0

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H-R  112 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~-~  112 (212)
                      +++.+++|..    ...++++++...+|++++|+||||||||||+++|+++       |...++...+.        + .
T Consensus         6 ~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            6 IRDLWASIDG----ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             EEeEEEEECC----EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence            4555555531    2356778889999999999999999999999999996       22233321110        0 0


Q ss_pred             c-ccCCc-------------------------------hhHHHHHHHhCCc--cC-------CCCCccchHhHHHHhcCC
Q psy17138        113 A-YDVGT-------------------------------RGNQVVRELFGED--IA-------LPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       113 ~-~~~~~-------------------------------~~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~~vf~~  151 (212)
                      + |.++.                               .....+++.+|..  ..       -+.|+.+|-.++..+.++
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~  161 (250)
T 2d2e_A           82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE  161 (250)
T ss_dssp             BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred             EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence            0 11110                               0112233445541  11       135677888999999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~  207 (212)
                      |+  +++++.+.++|.....+.+.++++......+++.+|.+.+.  ..+ ||+++++.
T Consensus       162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~--~~~~~d~v~~l~  218 (250)
T 2d2e_A          162 PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL--NYIQPDKVHVMM  218 (250)
T ss_dssp             CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG--GTSCCSEEEEEE
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhcCCEEEEEE
Confidence            98  56889999999999999999988754456778889998664  356 59999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.37  E-value=2.3e-13  Score=111.63  Aligned_cols=118  Identities=18%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cCCe----------eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccch
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAG----------LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDR  141 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~----------vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r  141 (212)
                      ..++.+|+|+|++||||||+++.|+. +|++          ++++|.+.+.+..       +              .+++
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-------~--------------~~~~   77 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-------E--------------QKAK   77 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-------H--------------HHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-------h--------------hhhh
Confidence            34578999999999999999999986 8877          6788876554211       0              0111


Q ss_pred             HhHHHHhcCChHH------HHHHHhhhhHHHHH------HHHHHHHh-hc-CCCcEEEEEecccc-ccccccccCeEEEE
Q psy17138        142 KKLGAIVFSNKDE------MNKLNQAIWPLILA------QVKEEIAR-LS-ESHKVIVIEAAVLL-SAKWQDQVHEIWVT  206 (212)
Q Consensus       142 ~~l~~~vf~~~~~------~~~~~~i~~p~~~~------~~~~~i~~-~~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v  206 (212)
                      ...+...|.+|..      ...++.+.+|....      .....+.+ .. ....++++|+++++ +.++.+.||.+|++
T Consensus        78 ~~~g~~~f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l  157 (252)
T 1uj2_A           78 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFV  157 (252)
T ss_dssp             HHTTCSCTTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEE
T ss_pred             hccCCCCCCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEE
Confidence            2222234444443      23333333221000      00000000 00 24579999999987 67788889999999


Q ss_pred             EeCCC
Q psy17138        207 FIPEQ  211 (212)
Q Consensus       207 ~~~~~  211 (212)
                      ++|++
T Consensus       158 ~~~~e  162 (252)
T 1uj2_A          158 DTDAD  162 (252)
T ss_dssp             ECCHH
T ss_pred             eCCHH
Confidence            99865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.37  E-value=9.5e-14  Score=110.19  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc----CCee--eeCCcccccc---ccCCchhHHHHHHHhCCccCCCCCccchHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAGL--INCDQLGHRA---YDVGTRGNQVVRELFGEDIALPDGSIDRKK  143 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~v--i~~D~i~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~  143 (212)
                      ..++.+++|+|++||||||+++.|.++    |..+  ++.|...+..   +..+.....+        ++  .+.+++..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~--------~~--~~~~d~~~   88 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE--------YY--YLQWDVEW   88 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH--------HH--HTSSCHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC--------CC--ccccCHHH
Confidence            566899999999999999999999863    4433  3456544321   1121111000        00  24578888


Q ss_pred             HHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        144 LGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       144 l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      ++..+|++...  ...+..+.||....   .. .... ....++++|++++++.+|.++||.+|+|+||+++
T Consensus        89 l~~~v~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~  156 (201)
T 1rz3_A           89 LTHQLFRQLKASHQLTLPFYDHETDTH---SK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREI  156 (201)
T ss_dssp             HHHHTGGGTTTCSEEEEEEEETTTTEE---EE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC---
T ss_pred             HHHHHHHHHhcCCccccCceeccCCCC---CC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHH
Confidence            88888876532  11122344441100   00 0111 3567999999999998899999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.36  E-value=2.7e-13  Score=112.49  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=100.1

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------ccc---ccc---------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------GHR---AYD---------  115 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------~~~---~~~---------  115 (212)
                      .++++++...+|.+++|+||||||||||+++|+++     |...++...+            ..+   .+.         
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~  101 (266)
T 2yz2_A           22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA  101 (266)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence            46778889999999999999999999999999987     2223322111            000   000         


Q ss_pred             -------CC---chhHHHHHHHhCCc--cC-C------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        116 -------VG---TRGNQVVRELFGED--IA-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       116 -------~~---~~~~~~~~~~~g~~--~~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                             +.   ......+++.+|..  -+ +      +.|+.+|-.++..+..+|+  +++++.+.++|.....+.+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l  181 (266)
T 2yz2_A          102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV  181 (266)
T ss_dssp             HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence                   00   01134455666654  21 1      2356778899999999998  568899999999999999999


Q ss_pred             HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.......+++.+|.+.+.  ..+||+++++.
T Consensus       182 ~~l~~~g~tii~vtHd~~~~--~~~~d~v~~l~  212 (266)
T 2yz2_A          182 EKWKTLGKTVILISHDIETV--INHVDRVVVLE  212 (266)
T ss_dssp             HHHHHTTCEEEEECSCCTTT--GGGCSEEEEEE
T ss_pred             HHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            88752356778889998764  46899999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.36  E-value=2.1e-13  Score=113.21  Aligned_cols=155  Identities=11%  Similarity=0.062  Sum_probs=104.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H  111 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~  111 (212)
                      ..+.+.+++|..    ...++++++...+|.+++|+||||||||||+++|+++       |...++...+.        +
T Consensus        21 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           21 LSIKDLHVSVED----KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             EEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            346666666631    2356778899999999999999999999999999996       22233321110        0


Q ss_pred             -cc-ccCCc-----------------------------------hhHHHHHHHhCCc--cCC-------CCCccchHhHH
Q psy17138        112 -RA-YDVGT-----------------------------------RGNQVVRELFGED--IAL-------PDGSIDRKKLG  145 (212)
Q Consensus       112 -~~-~~~~~-----------------------------------~~~~~~~~~~g~~--~~~-------~~~~~~r~~l~  145 (212)
                       .+ |.++.                                   .....+++.+|..  ..+       +.|+.+|-.|+
T Consensus        97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA  176 (267)
T 2zu0_C           97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  176 (267)
T ss_dssp             HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred             CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence             00 11100                                   0112334455642  111       22455788899


Q ss_pred             HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138        146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF  207 (212)
Q Consensus       146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~  207 (212)
                      ..+..+|+  +++++.+.++|.....+.+.++++......+++.+|.+.+.  ..+ ||+++++.
T Consensus       177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~--~~~~~d~v~~l~  239 (267)
T 2zu0_C          177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL--DYIKPDYVHVLY  239 (267)
T ss_dssp             HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG--GTSCCSEEEEEE
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH--HhhcCCEEEEEE
Confidence            99999998  56889999999999999999988754456788889998664  344 89999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.36  E-value=1.7e-13  Score=112.55  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=103.7

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~  112 (212)
                      ...+++.+++|...  ....++++++...+|++++|+||||||||||+++|+++     |...++...+.        +.
T Consensus         7 ~~~~~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            7 DITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             ceeEEEEEEEeCCC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence            34566666666211  12356778899999999999999999999999999987     33333321110        00


Q ss_pred             -cccCC---------------------chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138        113 -AYDVG---------------------TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 -~~~~~---------------------~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~  152 (212)
                       .|.++                     .......++.++..                  ..-+.|+.+|-.++..+..+|
T Consensus        85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p  164 (247)
T 2ff7_A           85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  164 (247)
T ss_dssp             EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence             01110                     00111222222221                  011346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+++... ...+++-+|.+...   ..||+++++.
T Consensus       165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~~~---~~~d~v~~l~  217 (247)
T 2ff7_A          165 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTV---KNADRIIVME  217 (247)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGG---TTSSEEEEEE
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            8  56889999999999999999988753 56777779998654   3599999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.35  E-value=1.6e-12  Score=103.15  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHhCCccC---CCCCccchHhHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIA---LPDGSIDRKKLGA  146 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~r~~l~~  146 (212)
                      ...++.+++|+|++||||||+++.|+++  ++.+++.|.+.+.    ....      ..+...+   .....+++..+..
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~l~~   86 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP----ESEI------ETDKNGFLQYDVLEALNMEKMMS   86 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC----GGGS------CBCTTSCBCCSSGGGBCHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC----HhHh------hccccCCChhHHHHHhHHHHHHH
Confidence            4667899999999999999999999985  8899998865432    1100      0011000   0111234444432


Q ss_pred             HhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        147 IVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       147 ~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                      .+      ..+++..++|.+...+..     ..+..++++|++++++ ..|.+.||.++++++|++
T Consensus        87 ~i------~~~l~~~~~~~~~~~~~~-----~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~  141 (207)
T 2qt1_A           87 AI------SCWMESARHSVVSTDQES-----AEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYE  141 (207)
T ss_dssp             HH------HHHHHHHTTSSCCC----------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHH
T ss_pred             HH------HHHHhCCCCCCcCCCeee-----cCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHH
Confidence            22      223334444433322221     1346799999999887 367889999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.34  E-value=1.3e-14  Score=116.97  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---ccc-cccCC
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHR-AYDVG  117 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~-~~~~~  117 (212)
                      ..+++.+++|.   .  ..++++++...+|++++|+||||||||||+++|+++     |...++...+   .+. .|.++
T Consensus        11 l~~~~ls~~y~---~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q   85 (214)
T 1sgw_A           11 LEIRDLSVGYD---K--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE   85 (214)
T ss_dssp             EEEEEEEEESS---S--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred             EEEEEEEEEeC---C--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence            34566666663   2  456778899999999999999999999999999987     3233332111   000 01000


Q ss_pred             --------------------------chhHHHHHHHhCCccCC------CCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138        118 --------------------------TRGNQVVRELFGEDIAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIW  163 (212)
Q Consensus       118 --------------------------~~~~~~~~~~~g~~~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~  163 (212)
                                                ......+++.+|..-..      +.|+.+|-.++..+..+|+  +++++.+.++
T Consensus        86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD  165 (214)
T 1sgw_A           86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID  165 (214)
T ss_dssp             SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence                                      01223445556543211      2356778889999999998  5688999999


Q ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138        164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE  210 (212)
Q Consensus       164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~  210 (212)
                      |.....+.+.+.+.......+++.+|.+.+.  ..+||++|+...+.
T Consensus       166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~--~~~~d~v~~~~~~~  210 (214)
T 1sgw_A          166 EDSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYSTKI  210 (214)
T ss_dssp             TTTHHHHHHHHHHHHHHHSEEEEEESSCCTT--SSEEEEGGGGBC--
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEeCCcc
Confidence            9999999998877652345777789998764  47899988766554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.33  E-value=3.5e-13  Score=111.52  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=102.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------cc-c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HR-A  113 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~-~  113 (212)
                      ..+++.+++|.... ....++++++...+|.+++|+||||||||||+++|+++    |...++...+.        +. .
T Consensus        18 l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~   96 (260)
T 2ghi_A           18 IEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG   96 (260)
T ss_dssp             EEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEE
T ss_pred             EEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEE
Confidence            34566666663211 12356778889999999999999999999999999987    33333321110        00 0


Q ss_pred             ccCC---------------------chhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH-
Q psy17138        114 YDVG---------------------TRGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       114 ~~~~---------------------~~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      |.++                     .......++.++..                 . .-+.|+.+|-.++..+..+|+ 
T Consensus        97 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  176 (260)
T 2ghi_A           97 IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI  176 (260)
T ss_dssp             EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE
Confidence            1111                     00111222222210                 0 113466778889999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.+.+... ...+++-+|.+...   ..||+++++.
T Consensus       177 llLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~---~~~d~i~~l~  227 (260)
T 2ghi_A          177 VIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTI---SSAESIILLN  227 (260)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGS---TTCSEEEEEE
T ss_pred             EEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH---HhCCEEEEEE
Confidence             56888999999999999999988754 56788889998664   3599999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.33  E-value=2.1e-13  Score=112.15  Aligned_cols=141  Identities=20%  Similarity=0.194  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------cc-cccCC--------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HR-AYDVG--------------  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~-~~~~~--------------  117 (212)
                      .++++++...+|.+++|+||||||||||+++|+++    |...++...+.        +. .|.++              
T Consensus        15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l   94 (249)
T 2qi9_C           15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   94 (249)
T ss_dssp             TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence            45667888999999999999999999999999987    32233321110        00 01000              


Q ss_pred             ---------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-------H--HHHHHhhhhHHHHHHHHH
Q psy17138        118 ---------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-------E--MNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       118 ---------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-------~--~~~~~~i~~p~~~~~~~~  172 (212)
                               ......+++.+|..-+       -+.|+.+|-.++..+.++|+       +  ++++.+.++|.....+.+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~  174 (249)
T 2qi9_C           95 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK  174 (249)
T ss_dssp             HTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH
T ss_pred             HHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH
Confidence                     1123345555664322       13366778889988888887       3  578999999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+++.......+++.+|.+.+.  ..+||+++++.
T Consensus       175 ~l~~l~~~g~tviivtHd~~~~--~~~~d~v~~l~  207 (249)
T 2qi9_C          175 ILSALSQQGLAIVMSSHDLNHT--LRHAHRAWLLK  207 (249)
T ss_dssp             HHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            9988752356777889998664  46899999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.32  E-value=6.3e-13  Score=115.91  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=106.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------ccc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HRA  113 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~~  113 (212)
                      ...+++.+++|...  ....++++++...+|++++|+||||||||||+++|+++    |...++...+.        +.+
T Consensus        19 ~i~~~~l~~~y~~~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           19 QMTVKDLTAKYTEG--GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CEEEEEEEEESSSS--SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             eEEEEEEEEEecCC--CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence            35677777777421  23467888999999999999999999999999999987    33344432221        000


Q ss_pred             -ccCC--------------------chhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH-
Q psy17138        114 -YDVG--------------------TRGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       114 -~~~~--------------------~~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                       |.++                    .......++.++..-+                  -+.|+.+|-.|+..+..+|+ 
T Consensus        97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l  176 (390)
T 3gd7_A           97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  176 (390)
T ss_dssp             EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence             1000                    0112233333332110                  14567789999999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|..+..+.+.+++... ...+++-+|.+ ++  ..+||+++++.
T Consensus       177 LLLDEPts~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~-e~--~~~aDri~vl~  227 (390)
T 3gd7_A          177 LLLDEPSAHLDPVTYQIIRRTLKQAFA-DCTVILCEARI-EA--MLECDQFLVIE  227 (390)
T ss_dssp             EEEESHHHHSCHHHHHHHHHHHHTTTT-TSCEEEECSSS-GG--GTTCSEEEEEE
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCH-HH--HHhCCEEEEEE
Confidence             56889999999999999999887643 45677779986 33  24699999885

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.32  E-value=9.2e-14  Score=113.80  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=100.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------cccc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GHRA-Y  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~~~-~  114 (212)
                      +++.+++|.  + ....++++++...+|.+++|+||||||||||+++|+++     |...++...+        .+.+ |
T Consensus         4 ~~~l~~~y~--~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            4 ARHVDFAYD--D-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             EEEEEECSS--S-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEeC--C-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            444555552  1 12356778889999999999999999999999999987     4444433111        0000 1


Q ss_pred             cCC----------------------chhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH-
Q psy17138        115 DVG----------------------TRGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       115 ~~~----------------------~~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      .+.                      .......++.+|..-+                  -+.|+.+|-.++..+.++|+ 
T Consensus        81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  160 (243)
T 1mv5_A           81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (243)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence            000                      0112233334443211                  13356678889999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.++|.....+.+.+.+.. ....+++.+|.+...   ..||+++++.
T Consensus       161 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~---~~~d~v~~l~  211 (243)
T 1mv5_A          161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTI---VDADKIYFIE  211 (243)
T ss_dssp             EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHH---HHCSEEEEEE
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH---HhCCEEEEEE
Confidence             5678888999999989988887775 356778889998653   3599999885

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.30  E-value=7.3e-13  Score=106.18  Aligned_cols=133  Identities=9%  Similarity=0.058  Sum_probs=75.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccccc----CC-----chhHHHHHHHhCCccCCCCC----ccch
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYD----VG-----TRGNQVVRELFGEDIALPDG----SIDR  141 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~----~~-----~~~~~~~~~~~g~~~~~~~~----~~~r  141 (212)
                      +.+|+|+|++||||||+++.|++ +|++++++|.+.+....    .+     ......+...+|.......+    ....
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            56899999999999999999986 69999998877654311    11     11223333434332211000    0001


Q ss_pred             HhHHHHhcCChHHHHHH-HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        142 KKLGAIVFSNKDEMNKL-NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       142 ~~l~~~vf~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ..+. .-|.+....... ..-.+|.++..+....... .....+++|++.+.+ .+...+|.+|++++|.+
T Consensus        85 ~~v~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e  152 (227)
T 1cke_A           85 EDVS-GEIRTQEVANAASQVAAFPRVREALLRRQRAF-RELPGLIADGRDMGT-VVFPDAPVKIFLDASSE  152 (227)
T ss_dssp             EECH-HHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCEEEEESSCCC-CCCTTCSEEEEEECCHH
T ss_pred             eeCc-hhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHH-HhCCCEEEECCCccc-eEecCCCEEEEEeCCHH
Confidence            0111 112222222111 1125667666665444332 234688999997655 34567999999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.29  E-value=7e-13  Score=110.31  Aligned_cols=157  Identities=18%  Similarity=0.120  Sum_probs=103.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-  112 (212)
                      ..+.+.+++|...+ ....++++++...+|++++|+||||||||||+++|+++     |...++...+..        . 
T Consensus        17 l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   95 (271)
T 2ixe_A           17 VKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV   95 (271)
T ss_dssp             EEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             EEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence            45666666664210 12356778899999999999999999999999999987     333333221100        0 


Q ss_pred             cccCC------chh----------------H---------HHHHHHh--CCccC-------CCCCccchHhHHHHhcCCh
Q psy17138        113 AYDVG------TRG----------------N---------QVVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 ~~~~~------~~~----------------~---------~~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~  152 (212)
                      .|.++      ...                .         ..++..+  |..-.       -+.|+.+|-.|+..+..+|
T Consensus        96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p  175 (271)
T 2ixe_A           96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP  175 (271)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence            01000      000                0         1112222  11100       1346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+.+.. .....+++.+|.+...   ..||+++++.
T Consensus       176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~---~~~d~v~~l~  230 (271)
T 2ixe_A          176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA---ERAHHILFLK  230 (271)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH---TTCSEEEEEE
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            8  5688999999999999999998875 3356778889998764   2499999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.29  E-value=7.5e-13  Score=109.71  Aligned_cols=137  Identities=9%  Similarity=-0.042  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----CeeeeCCccc------ccc-ccCCc---------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----AGLINCDQLG------HRA-YDVGT---------------  118 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----~~vi~~D~i~------~~~-~~~~~---------------  118 (212)
                      .++++++... |.+++|+||||||||||+++|+++-    ...++...+.      +-. |.++.               
T Consensus        20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~   98 (263)
T 2pjz_A           20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE   98 (263)
T ss_dssp             EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHH
T ss_pred             eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhh
Confidence            4667888899 9999999999999999999999873    2223321110      001 11110               


Q ss_pred             -------hhHHHHHHHhCCc-cC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17138        119 -------RGNQVVRELFGED-IA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESH  181 (212)
Q Consensus       119 -------~~~~~~~~~~g~~-~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~  181 (212)
                             .....+++.+|.. -.       -+.|+.+|-.++..+..+|+  +++++.+.++|.....+.+.+++...  
T Consensus        99 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--  176 (263)
T 2pjz_A           99 ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--  176 (263)
T ss_dssp             HHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--
T ss_pred             hhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--
Confidence                   1123445566654 21       12356778899999999998  56889999999999999999987642  


Q ss_pred             cEEEEEeccccccccccccC-eEEEEE
Q psy17138        182 KVIVIEAAVLLSAKWQDQVH-EIWVTF  207 (212)
Q Consensus       182 ~~vvie~~~l~e~~~~~~~d-~v~~v~  207 (212)
                       .+++.+|.+.+.  ..+|| +++++.
T Consensus       177 -tviivtHd~~~~--~~~~d~~i~~l~  200 (263)
T 2pjz_A          177 -EGILVTHELDML--NLYKEYKAYFLV  200 (263)
T ss_dssp             -EEEEEESCGGGG--GGCTTSEEEEEE
T ss_pred             -cEEEEEcCHHHH--HHhcCceEEEEE
Confidence             777889998664  47899 998875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.27  E-value=4.1e-13  Score=113.59  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=103.3

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~  112 (212)
                      ...+.+++++|..   ....++++++..++|++++|+||||||||||+++|.++     |...+++..+..        .
T Consensus        53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~  129 (306)
T 3nh6_A           53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH  129 (306)
T ss_dssp             CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred             eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence            3557777777742   12356778899999999999999999999999999987     333444322210        0


Q ss_pred             -cccCC------c---------------hhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138        113 -AYDVG------T---------------RGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 -~~~~~------~---------------~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~  152 (212)
                       .|.++      .               .......+..+..                  ..-+.|+.+|-.|++.+..+|
T Consensus       130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p  209 (306)
T 3nh6_A          130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP  209 (306)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             eEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence             01100      0               0111111111110                  001346778899999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .  +++++.+.++|.....+.+.+.+...+ .++++-+|.+...  . .||++++++
T Consensus       210 ~iLlLDEPts~LD~~~~~~i~~~l~~l~~~-~Tvi~itH~l~~~--~-~aD~i~vl~  262 (306)
T 3nh6_A          210 GIILLDEATSALDTSNERAIQASLAKVCAN-RTTIVVAHRLSTV--V-NADQILVIK  262 (306)
T ss_dssp             SEEEEECCSSCCCHHHHHHHHHHHHHHHTT-SEEEEECCSHHHH--H-TCSEEEEEE
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEEcChHHH--H-cCCEEEEEE
Confidence            8  557888899999999999888877543 5667779998764  3 499999885

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.26  E-value=1.2e-12  Score=118.62  Aligned_cols=137  Identities=19%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---cccc-CCchhH------------------H
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---RAYD-VGTRGN------------------Q  122 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---~~~~-~~~~~~------------------~  122 (212)
                      ++...+|+++||+|+||||||||+++|+++     |...++...++.   .... ......                  .
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~  367 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE  367 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence            445678999999999999999999999986     333222222111   1100 001111                  1


Q ss_pred             HHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccc
Q psy17138        123 VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLL  192 (212)
Q Consensus       123 ~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~  192 (212)
                      .+++.+|..-.       -+.|+.+|..|+.++.++|+  +++++.+.+++.....+.+.++++. .....+++-+|.+.
T Consensus       368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~  447 (538)
T 3ozx_A          368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS  447 (538)
T ss_dssp             HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            11222222111       13367788999999999998  5688999999999999999998775 34567777799998


Q ss_pred             ccccccccCeEEEEEe
Q psy17138        193 SAKWQDQVHEIWVTFI  208 (212)
Q Consensus       193 e~~~~~~~d~v~~v~~  208 (212)
                      ++  ..+||+++++.-
T Consensus       448 ~~--~~~aDri~vl~~  461 (538)
T 3ozx_A          448 IH--DYIADRIIVFKG  461 (538)
T ss_dssp             HH--HHHCSEEEEEEE
T ss_pred             HH--HHhCCEEEEEeC
Confidence            75  478999999863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.26  E-value=1.2e-12  Score=110.64  Aligned_cols=126  Identities=25%  Similarity=0.246  Sum_probs=71.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchhHHHHHHHhCCc-cCCCCCccchHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRGNQVVRELFGED-IALPDGSIDRKK  143 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~r~~  143 (212)
                      ..+|.++||+|+|||||||++++|+++ +       ..++++|....    + ..    .....|.- .....+.++...
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~----~-~~----~~~~~~~vq~~~~~~~~~~~~  147 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH----P-NQ----VLKERGLMKKKGFPESYDMHR  147 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC----C-HH----HHHHHTCTTCTTSGGGBCHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC----c-HH----HHHhCCEeecCCCCCCccHHH
Confidence            467999999999999999999999984 3       34556664332    1 11    11122211 000011223222


Q ss_pred             HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh--c-CCCcEEEEEecccccc-----------ccccccCeEEEEEe
Q psy17138        144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL--S-ESHKVIVIEAAVLLSA-----------KWQDQVHEIWVTFI  208 (212)
Q Consensus       144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~--~-~~~~~vvie~~~l~e~-----------~~~~~~d~v~~v~~  208 (212)
                      +..++..    +.... .+.+|.+.....+++...  . .+.+++++|++++++.           ++.++||.+|+|++
T Consensus       148 ~~~~~~~----l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~  223 (308)
T 1sq5_A          148 LVKFVSD----LKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA  223 (308)
T ss_dssp             HHHHHHH----HTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEEC
T ss_pred             HHHHHHH----HhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEEC
Confidence            2211110    00001 144555544443333211  1 3467999999999976           78889999999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      |.+
T Consensus       224 ~~~  226 (308)
T 1sq5_A          224 PED  226 (308)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=105.93  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Ccc-----c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQL-----G  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~i-----~  110 (212)
                      .+++.+++|...  ....++++++...+|.+++|+||||||||||+++|+++     |...++.       +..     .
T Consensus         5 ~~~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv   82 (237)
T 2cbz_A            5 TVRNATFTWARS--DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSL   82 (237)
T ss_dssp             EEEEEEEESCTT--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEH
T ss_pred             EEEEEEEEeCCC--CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCH
Confidence            345555555311  12356778889999999999999999999999999987     2222221       100     0


Q ss_pred             ccc--cc--CCchhHHHHHHH------hCC-----------cc-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        111 HRA--YD--VGTRGNQVVREL------FGE-----------DI-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       111 ~~~--~~--~~~~~~~~~~~~------~g~-----------~~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      .+.  +.  ..........+.      ++.           .. .-+.|+.+|-.++..+..+|+  +++++.+.++|..
T Consensus        83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~  162 (237)
T 2cbz_A           83 RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV  162 (237)
T ss_dssp             HHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred             HHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            000  00  001112222221      111           00 013467778899999999998  5688999999999


Q ss_pred             HHHHHHHHH---hhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEIA---RLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i~---~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+.   +. .....+++.+|.+...   ..||+++++.
T Consensus       163 ~~~i~~~l~~~~~~-~~~~tviivtH~~~~~---~~~d~v~~l~  202 (237)
T 2cbz_A          163 GKHIFENVIGPKGM-LKNKTRILVTHSMSYL---PQVDVIIVMS  202 (237)
T ss_dssp             HHHHHHHTTSTTST-TTTSEEEEECSCSTTG---GGSSEEEEEE
T ss_pred             HHHHHHHHHHHHhh-cCCCEEEEEecChHHH---HhCCEEEEEe
Confidence            999988884   22 2356788889998653   4699999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.23  E-value=9.4e-12  Score=113.67  Aligned_cols=155  Identities=15%  Similarity=0.176  Sum_probs=105.5

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-  112 (212)
                      ..+++.+++|...  ....++++++..++|++++|+|||||||||++++|.++     |...+++..+.        +. 
T Consensus       342 i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          342 VDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            5567777777421  12467889999999999999999999999999999986     44444432210        00 


Q ss_pred             cccC--------------------C--chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138        113 AYDV--------------------G--TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 ~~~~--------------------~--~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~  152 (212)
                      .|.+                    .  .......++..|..                  ..-+.|+.+|-.+++.+..+|
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p  499 (582)
T 3b5x_A          420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA  499 (582)
T ss_pred             EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence            0100                    0  01111222222211                  001346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|...+.+.+.+.+... .+.+++-+|.+...   ..||++++++
T Consensus       500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~---~~~d~i~~l~  552 (582)
T 3b5x_A          500 PVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTI---EQADEILVVD  552 (582)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence            8  66899999999999999999887754 56777779988653   3699999885

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.21  E-value=8.5e-12  Score=101.15  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccccc----CCch-----hHHHHHHH----h------CCc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYD----VGTR-----GNQVVREL----F------GED  131 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~----~~~~-----~~~~~~~~----~------g~~  131 (212)
                      ...++.+|+|+|++||||||+++.|++ +|++++++|.+.+....    .+..     .+...+..    |      |..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~   91 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL   91 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence            466789999999999999999999986 89999999987654321    2211     22222221    1      122


Q ss_pred             cCCCCCc-cchHhHH-HHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        132 IALPDGS-IDRKKLG-AIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       132 ~~~~~~~-~~r~~l~-~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      ++. .|. ..| .+. ..+|+++.     ..+.+|.++..+.+.+..... ...+++++.... ..+...||.+|++++|
T Consensus        92 i~~-~G~~~~r-~l~~~~v~~~~~-----~~~~~~~vr~~~~~~~~~~~~-~~~~v~~g~~~~-~~~l~~~d~vi~L~a~  162 (236)
T 1q3t_A           92 VFV-GDVDITH-PIRENEVTNHVS-----AIAAIPEVREKLVSLQQEIAQ-QGGIVMDGRDIG-TVVLPQAELKIFLVAS  162 (236)
T ss_dssp             EEE-TTEEESS-SSCSHHHHHHHH-----HHHTSHHHHHHHHHHHHHHHT-TSCEEEECSSCS-SSSGGGCSEEEEEECC
T ss_pred             EeE-CCcCchh-hhccHHHHHHHH-----HHccCHHHHHHHHHHHHHhcc-cCCEEEECCcch-hhhccCCCEEEEEECC
Confidence            221 222 222 111 13444333     257888888887766654432 346777887543 2344578999999998


Q ss_pred             CC
Q psy17138        210 EQ  211 (212)
Q Consensus       210 ~~  211 (212)
                      ++
T Consensus       163 ~e  164 (236)
T 1q3t_A          163 VD  164 (236)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.21  E-value=1.4e-12  Score=105.92  Aligned_cols=154  Identities=12%  Similarity=0.072  Sum_probs=97.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--cc----------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QL----------G  110 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i----------~  110 (212)
                      .+.+.+++|...  ....++++++..++|++++|+||||||||||+++|+++     |...++..  .+          .
T Consensus         8 ~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv   85 (229)
T 2pze_A            8 VMENVTAFWEEG--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI   85 (229)
T ss_dssp             EEEEEEECSSTT--SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCH
T ss_pred             EEEEEEEEeCCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCH
Confidence            455555655311  12356778889999999999999999999999999987     22222210  00          0


Q ss_pred             cccccC----CchhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138        111 HRAYDV----GTRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI  166 (212)
Q Consensus       111 ~~~~~~----~~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~  166 (212)
                      .+....    .........+.++..                  ..-+.|+.+|-.++..+.++|+  +++++.+.++|..
T Consensus        86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~  165 (229)
T 2pze_A           86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT  165 (229)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred             HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHH
Confidence            010000    001111222222210                  0113456778899999999998  5688999999999


Q ss_pred             HHHHHHHH-HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        167 LAQVKEEI-ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       167 ~~~~~~~i-~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+.+.+ .+.. ....+++.+|.+.+.   ..||+++++.
T Consensus       166 ~~~i~~~l~~~~~-~~~tvi~vtH~~~~~---~~~d~v~~l~  203 (229)
T 2pze_A          166 EKEIFESCVCKLM-ANKTRILVTSKMEHL---KKADKILILH  203 (229)
T ss_dssp             HHHHHHHCCCCCT-TTSEEEEECCCHHHH---HHCSEEEEEE
T ss_pred             HHHHHHHHHHHhh-CCCEEEEEcCChHHH---HhCCEEEEEE
Confidence            99988763 3432 346778889997653   3599999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.21  E-value=8.3e-13  Score=112.36  Aligned_cols=126  Identities=20%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchhHHHHHHHhCCcc-CCCCCccchHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRGNQVVRELFGEDI-ALPDGSIDRKK  143 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~r~~  143 (212)
                      ..+++++||+|||||||||++++|.++ .       ..++..|..     ....   .. ....+... ......++...
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f-----~~~~---~~-l~~~~~~~~~g~P~~~D~~~  159 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF-----LYSN---AK-LEKQGLMKRKGFPESYDMPS  159 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG-----BCCH---HH-HHHTTCGGGTTSGGGBCHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc-----ccch---hh-hhhHHHHhhccCcccccHHH
Confidence            556899999999999999999999875 2       233444431     1111   11 11111100 00111233332


Q ss_pred             HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh--c-CCCcEEEEEeccccccc-----------cccccCeEEEEEe
Q psy17138        144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL--S-ESHKVIVIEAAVLLSAK-----------WQDQVHEIWVTFI  208 (212)
Q Consensus       144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~--~-~~~~~vvie~~~l~e~~-----------~~~~~d~v~~v~~  208 (212)
                      +...+    ..+.... .+..|.+.....+++...  . ...+++++|+.++++.+           +.++||.+|+|++
T Consensus       160 l~~~L----~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda  235 (321)
T 3tqc_A          160 LLRVL----NAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDA  235 (321)
T ss_dssp             HHHHH----HHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEEC
T ss_pred             HHHHH----HhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEEC
Confidence            22111    1111111 233344433333322111  1 45689999999998755           7789999999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      |++
T Consensus       236 ~~d  238 (321)
T 3tqc_A          236 QAQ  238 (321)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            965

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.3e-11  Score=113.28  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe-----------eeeCCccc--------ccc-------cc-----
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG-----------LINCDQLG--------HRA-------YD-----  115 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~-----------vi~~D~i~--------~~~-------~~-----  115 (212)
                      .+.+|+++||+||||||||||+++|+++     |..           ++....+.        .+.       |.     
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            4778999999999999999999999986     221           11111100        000       00     


Q ss_pred             ------------------CCchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        116 ------------------VGTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       116 ------------------~~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                                        ........+++.+|....       -+.|+.+|..|+..+.++|+  +++++.+.++|....
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~  258 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL  258 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence                              000223445566665432       13367788899999999998  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.++++......+++-+|.+.+.  ..+||++++++
T Consensus       259 ~l~~~l~~l~~~g~tvi~vtHdl~~~--~~~~drv~vl~  295 (608)
T 3j16_B          259 NAAQIIRSLLAPTKYVICVEHDLSVL--DYLSDFVCIIY  295 (608)
T ss_dssp             HHHHHHHGGGTTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence            99999988874456777779999775  57899999885

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.18  E-value=1.5e-11  Score=111.45  Aligned_cols=132  Identities=18%  Similarity=0.237  Sum_probs=92.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe-----------eeeCCccc--------------ccc-c-------
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GAG-----------LINCDQLG--------------HRA-Y-------  114 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~-----------vi~~D~i~--------------~~~-~-------  114 (212)
                      +.+|+++||+||||||||||+|+|+++     |..           .++...+.              ... +       
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            677999999999999999999999986     221           11111110              000 0       


Q ss_pred             cCC-----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138        115 DVG-----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI  174 (212)
Q Consensus       115 ~~~-----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i  174 (212)
                      ..+           ......+.+.+|.....       +.|+.+|..|+..+.++|+  +++++.+.++|.....+.+.+
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l  181 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI  181 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            000           01234455666654321       2367788899999999998  568899999999999999999


Q ss_pred             HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.. ...+++-+|.+.+.  ..+||+++++.
T Consensus       182 ~~l~~-g~tii~vsHdl~~~--~~~~d~i~vl~  211 (538)
T 3ozx_A          182 RELLK-NKYVIVVDHDLIVL--DYLTDLIHIIY  211 (538)
T ss_dssp             HHHCT-TSEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHhC-CCEEEEEEeChHHH--HhhCCEEEEec
Confidence            88765 56777779999764  57899998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.18  E-value=1.7e-11  Score=97.78  Aligned_cols=128  Identities=17%  Similarity=0.149  Sum_probs=76.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc----ccCCc-hhHHHHHHH----h------CCccCCCCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA----YDVGT-RGNQVVREL----F------GEDIALPDGSI  139 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~----~~~~~-~~~~~~~~~----~------g~~~~~~~~~~  139 (212)
                      +.+|+|+|++||||||+++.|+. +|++++++|.+.+..    ...+. .........    |      |..++. +|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~-~g~~   81 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVIL-DNED   81 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEE-TTEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEe-CCcc
Confidence            56899999999999999999986 799999999876643    22221 111111111    2      323321 2322


Q ss_pred             chHhHHHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        140 DRKKLGAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       140 ~r~~l~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .++.     +.++......+. ..||.+.+.+......... ...++++++.+ +..+...+|.+|++++|.+
T Consensus        82 ~~~~-----~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e  147 (219)
T 2h92_A           82 VTDF-----LRNNDVTQHVSYVASKEPVRSFAVKKQKELAA-EKGIVMDGRDI-GTVVLPDADLKVYMIASVE  147 (219)
T ss_dssp             CGGG-----SSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHT-TCCEEEEESSC-CCCCCTTCSEEEEEECCHH
T ss_pred             chhh-----cCcHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcEEEEcCCc-cceecCCCCEEEEEECCHH
Confidence            2211     233333333333 5788887776554433322 23577888755 3345567899999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.18  E-value=2.5e-12  Score=102.06  Aligned_cols=128  Identities=18%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc-C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL-G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVF  149 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf  149 (212)
                      ..+|.++||+|+|||||||++++|+++ +  ..+++.|...+......  .... . .+.   +...+..++..+...+ 
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~--~~~~-~-~~~---~~~~~~~~~~~~~~~l-   74 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLP--LEER-L-RVN---YDHPDAFDLALYLEHA-   74 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSC--HHHH-H-HSC---TTSGGGBCHHHHHHHH-
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCccccc--HHHh-c-CCC---CCChhhhhHHHHHHHH-
Confidence            356899999999999999999999985 7  77788776543321111  1111 1 111   1112233443333222 


Q ss_pred             CChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138        150 SNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~  211 (212)
                         ..+...+.+.+|........+..+. . ....++++++++++. ..+..+||.+|+++++.+
T Consensus        75 ---~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~  136 (211)
T 3asz_A           75 ---QALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD  136 (211)
T ss_dssp             ---HHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred             ---HHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence               1111111122221111110000000 1 345699999999884 456779999999999753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.18  E-value=6.9e-12  Score=102.33  Aligned_cols=39  Identities=36%  Similarity=0.543  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCe
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAG  102 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~  102 (212)
                      ..++++++...+|.++||+|||||||||++++|++ +|..
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            45777889999999999999999999999999998 4765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.17  E-value=3.2e-11  Score=109.26  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe---------eeeCCccc--------c--cc-cc----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG---------LINCDQLG--------H--RA-YD----  115 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~---------vi~~D~i~--------~--~~-~~----  115 (212)
                      .+.+++ ...+|+++||+|+||||||||+|+|+++     |..         .+++..+.        .  .+ +.    
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~  115 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV  115 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence            355677 7899999999999999999999999986     221         01111000        0  00 00    


Q ss_pred             ---C----C-----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        116 ---V----G-----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       116 ---~----~-----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                         +    .           ......+++.+|.....       +.|+.+|..|+..+.++|+  +++++.+.++|....
T Consensus       116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~  195 (538)
T 1yqt_A          116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL  195 (538)
T ss_dssp             GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence               0    0           01234455666654321       2367788899999999998  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.++++......+++-+|.+.+.  ..+||+++++.
T Consensus       196 ~l~~~L~~l~~~g~tvi~vsHd~~~~--~~~~dri~vl~  232 (538)
T 1yqt_A          196 NAARAIRRLSEEGKSVLVVEHDLAVL--DYLSDIIHVVY  232 (538)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEc
Confidence            99988887753355677779998764  56899999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.17  E-value=2.4e-12  Score=117.96  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=104.4

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ...+++.+++|..   ....++++++..++|++++|+|||||||||++++|.++     |...+++..+.          
T Consensus       354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~  430 (598)
T 3qf4_B          354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS  430 (598)
T ss_dssp             CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence            3456777777642   22467889999999999999999999999999999987     33344432221          


Q ss_pred             -----cccccCCchh---------------HHHH---------HHHhCCcc---------CCCCCccchHhHHHHhcCCh
Q psy17138        111 -----HRAYDVGTRG---------------NQVV---------RELFGEDI---------ALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       111 -----~~~~~~~~~~---------------~~~~---------~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~  152 (212)
                           ++.+......               ....         +..+....         .-+.|+.+|-.+++.+.++|
T Consensus       431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p  510 (598)
T 3qf4_B          431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP  510 (598)
T ss_dssp             EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence                 1111000011               1111         11111000         01446778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|.....+.+.+.+... .+++++-+|.+...   ..||++++++
T Consensus       511 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~---~~~d~i~~l~  563 (598)
T 3qf4_B          511 KILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTI---KNADLIIVLR  563 (598)
T ss_dssp             SEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTTHH---HHCSEEEEEC
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence            8  56888999999999999988887753 56777779998764   4599999885

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.17  E-value=8.9e-12  Score=114.34  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe---------eeeCCccc--------c--cc-cc----
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG---------LINCDQLG--------H--RA-YD----  115 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~---------vi~~D~i~--------~--~~-~~----  115 (212)
                      .+.+++ ...+|+++||+|+||||||||+++|+++     |..         .+++..+.        .  .. +.    
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~  185 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV  185 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence            455667 7899999999999999999999999986     321         11111100        0  00 00    


Q ss_pred             ---C----C-----------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138        116 ---V----G-----------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA  168 (212)
Q Consensus       116 ---~----~-----------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~  168 (212)
                         +    .           ......+++.+|....       -+.|+.+|..|+..+.++|+  +++++.+.++|....
T Consensus       186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~  265 (607)
T 3bk7_A          186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL  265 (607)
T ss_dssp             GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence               0    0           0123445556664321       13467789999999999998  568899999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.+.++++......+++-+|.+.+.  ..+||+++++.
T Consensus       266 ~l~~~L~~l~~~g~tvIivsHdl~~~--~~~adri~vl~  302 (607)
T 3bk7_A          266 KVARVIRRLANEGKAVLVVEHDLAVL--DYLSDVIHVVY  302 (607)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEecChHHH--HhhCCEEEEEC
Confidence            99999988753356777779998764  46899999885

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.15  E-value=1.2e-11  Score=113.45  Aligned_cols=137  Identities=16%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee-------eCCc------cccccccC-------CchhHHH
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI-------NCDQ------LGHRAYDV-------GTRGNQV  123 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi-------~~D~------i~~~~~~~-------~~~~~~~  123 (212)
                      +++...+|+++||+||||||||||+++|+++     |...+       .-+.      ...++...       .......
T Consensus       375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~  454 (607)
T 3bk7_A          375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE  454 (607)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence            4455678999999999999999999999986     22111       1110      00000000       0011223


Q ss_pred             HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138        124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS  193 (212)
Q Consensus       124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e  193 (212)
                      +++.+|..-.       -+.|+.+|..|+..+.++|+  +++++.+.+++.....+.+.++++. .....+++-+|.+.+
T Consensus       455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  534 (607)
T 3bk7_A          455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  534 (607)
T ss_dssp             THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            3445554321       13467778899999999998  5688999999999999999998764 334577777999877


Q ss_pred             cccccccCeEEEEE
Q psy17138        194 AKWQDQVHEIWVTF  207 (212)
Q Consensus       194 ~~~~~~~d~v~~v~  207 (212)
                      +  ..+||+++++.
T Consensus       535 ~--~~~adrv~vl~  546 (607)
T 3bk7_A          535 I--DYVSDRLIVFE  546 (607)
T ss_dssp             H--HHHCSEEEEEE
T ss_pred             H--HHhCCEEEEEc
Confidence            5  46899999986

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.15  E-value=3.5e-12  Score=107.13  Aligned_cols=140  Identities=11%  Similarity=0.080  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----eeeeC-------Cc-----cccccccC---CchhHHH
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----GLINC-------DQ-----LGHRAYDV---GTRGNQV  123 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~vi~~-------D~-----i~~~~~~~---~~~~~~~  123 (212)
                      ..++++++...+|.+++|+||||||||||+++|+++-.     ..++.       +.     ...+....   .......
T Consensus        52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  131 (290)
T 2bbs_A           52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRS  131 (290)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHH
Confidence            45677889999999999999999999999999998722     22211       00     00011100   0001111


Q ss_pred             HHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCCc
Q psy17138        124 VRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESHK  182 (212)
Q Consensus       124 ~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~~  182 (212)
                      ....++..                  ..-+.|+.+|-.++..+.++|+  +++++.+.++|.....+.+.+ .+.. ...
T Consensus       132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~  210 (290)
T 2bbs_A          132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANK  210 (290)
T ss_dssp             HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTS
T ss_pred             HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCC
Confidence            22222210                  0113467788899999999998  568899999999999998763 3332 346


Q ss_pred             EEEEEeccccccccccccCeEEEEE
Q psy17138        183 VIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       183 ~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+++-+|.+...   ..||+++++.
T Consensus       211 tviivtHd~~~~---~~~d~i~~l~  232 (290)
T 2bbs_A          211 TRILVTSKMEHL---KKADKILILH  232 (290)
T ss_dssp             EEEEECCCHHHH---HHSSEEEEEE
T ss_pred             EEEEEecCHHHH---HcCCEEEEEE
Confidence            778889998653   3699999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.14  E-value=1.9e-12  Score=118.42  Aligned_cols=155  Identities=12%  Similarity=0.096  Sum_probs=104.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------c
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------R  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~  112 (212)
                      ..+.+.+++|...  ....++++++..++|++++|+|||||||||++++|.++     |...+++..+..         -
T Consensus       342 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          342 VSFENVEFRYFEN--TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             EEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             EEEEEEEEEcCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence            4566666666421  22456778899999999999999999999999999986     333444332210         0


Q ss_pred             cccCC---------------------chhHHHHHHHhC-----------Cc------c-CCCCCccchHhHHHHhcCChH
Q psy17138        113 AYDVG---------------------TRGNQVVRELFG-----------ED------I-ALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       113 ~~~~~---------------------~~~~~~~~~~~g-----------~~------~-~~~~~~~~r~~l~~~vf~~~~  153 (212)
                      .|.++                     ........+..+           .+      . .-+.|+.+|-.+++.+..+|+
T Consensus       420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~  499 (587)
T 3qf4_A          420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK  499 (587)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            01110                     001111111111           10      0 013467789999999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.++|...+.+.+.+++.. ..+++++-+|.+...   ..||++++++
T Consensus       500 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---~~~d~i~vl~  551 (587)
T 3qf4_A          500 VLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTA---LLADKILVLH  551 (587)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHH---TTSSEEEEEE
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHH---HhCCEEEEEE
Confidence              5688899999999999999888764 456777779998654   4799999885

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.13  E-value=4e-11  Score=98.41  Aligned_cols=137  Identities=12%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cC-CchhHHHHHHHhCCccCCCCCccch
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DV-GTRGNQVVRELFGEDIALPDGSIDR  141 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~-~~~~~~~~~~~~g~~~~~~~~~~~r  141 (212)
                      ...++.+|+|+|||||||||++++|+ .||+.+++++.+.+.+.        .. .......+...+|..... .+..++
T Consensus        23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (252)
T 4e22_A           23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS-QNGQLQ  101 (252)
T ss_dssp             CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE-ETTEEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec-CCCCce
Confidence            34568999999999999999999997 56999888776542211        00 111122222222221100 000000


Q ss_pred             HhHHHHhcCChHHHHHHHh-----hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        142 KKLGAIVFSNKDEMNKLNQ-----AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       142 ~~l~~~vf~~~~~~~~~~~-----i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ..+....+.+.-.......     ..+|.+++.+.+..+.... ..-+++++..+... +...+|.+||++||.+
T Consensus       102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~-~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e  174 (252)
T 4e22_A          102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFRE-APGLIADGRDMGTI-VFPDAPVKIFLDASSQ  174 (252)
T ss_dssp             EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCC-SSCEEEEESSCCCC-CSTTCSEEEEEECCHH
T ss_pred             EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-CCCEEEEeceecee-ecCCCCEEEEEECCHH
Confidence            0000011111111111111     2467787777776666543 33577788766432 2234789999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.12  E-value=1.5e-11  Score=112.34  Aligned_cols=155  Identities=16%  Similarity=0.175  Sum_probs=103.8

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+.+.+++|...  ....++++++..++|++++|+||||||||||+++|.++     |...+++..+.           
T Consensus       342 i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          342 LEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             EEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             EEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence            4566776766421  12356778899999999999999999999999999987     33334332210           


Q ss_pred             ----ccc------------c-c-CC--chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138        111 ----HRA------------Y-D-VG--TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       111 ----~~~------------~-~-~~--~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~  152 (212)
                          ++.            + . +.  .......++..+..                  ..-+.|+.+|-.+++.+.++|
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p  499 (582)
T 3b60_A          420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence                000            0 0 00  01111222222210                  001346778889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +  +++++.+.++|...+.+.+.+.+... .+.+++-+|.+...   ..||++++++
T Consensus       500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~---~~~d~i~~l~  552 (582)
T 3b60_A          500 PILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTI---EQADEIVVVE  552 (582)
T ss_dssp             SEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGT---TTCSEEEEEE
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHH---HhCCEEEEEE
Confidence            8  66889999999999999999887754 56777779998654   3699999885

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.12  E-value=1.7e-11  Score=111.97  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=103.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++.+++|..  .....++++++..++|++++|+|||||||||++++|.++     |...+++..+.           
T Consensus       340 i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          340 IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             EEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             EEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            456666666642  122456778899999999999999999999999999986     33334432211           


Q ss_pred             ----cccccCCc---------------hhHHHHHHHhCCc-----------c-------CCCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRAYDVGT---------------RGNQVVRELFGED-----------I-------ALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~~~~~~---------------~~~~~~~~~~g~~-----------~-------~~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.+....               .......+..+..           -       .-+.|+.+|-.+++.+.++|+
T Consensus       418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence                00000000               0111112211110           0       013467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.++|...+.+.+.+.+... .+++++-+|.+...   ..||++++++
T Consensus       498 illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~---~~~d~i~~l~  549 (578)
T 4a82_A          498 ILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTI---THADKIVVIE  549 (578)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGT---TTCSEEEEEE
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence              56888999999999999888877753 46777779998764   3599999885

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.12  E-value=1.6e-11  Score=96.66  Aligned_cols=111  Identities=15%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCC-ccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCD-QLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~  151 (212)
                      ..+|.+++|+|+|||||||++++|+++..+  +.+ .+.+....+.                  .+..++  . .++|++
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~--~~~~~i~~~~~~~~------------------~~~~~~--~-~~~~~~   59 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST--SYKYSISMTTRQMR------------------EGEVDG--V-DYFFKT   59 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCTTC--CEECCCCEECSCCC------------------TTCCBT--T-TBEECC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhhCC--CeEEecccccCCCC------------------CCccCC--C-ceEEcC
Confidence            456899999999999999999999987533  111 1111111111                  011111  1 366777


Q ss_pred             hHHHHHH----HhhhhHHH--------HHHHHHHHHhhcCCCcEEEEEecccccccccccc-CeEEEEEeCC
Q psy17138        152 KDEMNKL----NQAIWPLI--------LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQV-HEIWVTFIPE  210 (212)
Q Consensus       152 ~~~~~~~----~~i~~p~~--------~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~-d~v~~v~~~~  210 (212)
                      +..+..+    +.+.++.+        ...+...+.    ....++++.++.....+.+.| |.++++.+|+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~l~----~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~  127 (207)
T 2j41_A           60 RDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMD----EGHDVFLEIEVEGAKQVRKKFPDALFIFLAPP  127 (207)
T ss_dssp             HHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHH----TTCEEEEECCGGGHHHHHHHCTTSEEEEEECC
T ss_pred             HHHHHHHHHcCCeEEEEeECCeecCCCHHHHHHHHH----cCCeEEEEECHHHHHHHHHhcCCeEEEEEECC
Confidence            6654443    11222211        222333232    246899999887766666667 8677776653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.11  E-value=2.6e-11  Score=111.18  Aligned_cols=140  Identities=14%  Similarity=0.042  Sum_probs=93.5

Q ss_pred             CCCCCCCCCCC-----eEEEEecCCCCcHHHHHHHHHHc-----CCe-------eeeCCcc------ccccc----cC--
Q psy17138         66 VQPKPHLSPYP-----YIIGLTGGIASGKSTIAKYLETL-----GAG-------LINCDQL------GHRAY----DV--  116 (212)
Q Consensus        66 ~~~~~~~~~~~-----~iigl~G~~GsGKSTl~~~L~~l-----g~~-------vi~~D~i------~~~~~----~~--  116 (212)
                      .+++++...+|     +++||+|+||||||||+++|+++     |..       ++.-+..      ..+++    ..  
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~  442 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF  442 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence            34555655556     78999999999999999999987     211       1110000      00000    00  


Q ss_pred             -CchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEE
Q psy17138        117 -GTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIV  185 (212)
Q Consensus       117 -~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vv  185 (212)
                       .......+++.+|..-.       -+.|+.+|..|+.++.++|+  +++++.+.+++.....+.+.++++. .....++
T Consensus       443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi  522 (608)
T 3j16_B          443 LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF  522 (608)
T ss_dssp             TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence             00112334445553221       13467789999999999998  5688999999999999998888764 3345777


Q ss_pred             EEeccccccccccccCeEEEEE
Q psy17138        186 IEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       186 ie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +-+|.+.++  ..+||+++++.
T Consensus       523 ivtHdl~~~--~~~aDrvivl~  542 (608)
T 3j16_B          523 IVEHDFIMA--TYLADKVIVFE  542 (608)
T ss_dssp             EECSCHHHH--HHHCSEEEECE
T ss_pred             EEeCCHHHH--HHhCCEEEEEe
Confidence            779999875  46899999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.09  E-value=1.5e-11  Score=111.46  Aligned_cols=137  Identities=17%  Similarity=0.126  Sum_probs=90.1

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--ccccccc-cCCchh-----------------HHH
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QLGHRAY-DVGTRG-----------------NQV  123 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i~~~~~-~~~~~~-----------------~~~  123 (212)
                      +++...+|+++||+|+||||||||+++|.++     |...+...  .+..+.. .+....                 ...
T Consensus       305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~  384 (538)
T 1yqt_A          305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE  384 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence            4455678999999999999999999999986     22111000  0000000 011000                 111


Q ss_pred             HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138        124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS  193 (212)
Q Consensus       124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e  193 (212)
                      ++..+|..-.       -+.|+.+|..|+.++.++|+  +++++.+.+++.....+.+.++++. .....+++-+|.+.+
T Consensus       385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~  464 (538)
T 1yqt_A          385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  464 (538)
T ss_dssp             TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            1222232111       12356778899999999998  5688999999999999999988764 334567777999877


Q ss_pred             cccccccCeEEEEE
Q psy17138        194 AKWQDQVHEIWVTF  207 (212)
Q Consensus       194 ~~~~~~~d~v~~v~  207 (212)
                      +  ..+||+++++.
T Consensus       465 ~--~~~~drv~vl~  476 (538)
T 1yqt_A          465 I--DYVSDRLMVFE  476 (538)
T ss_dssp             H--HHHCSEEEEEE
T ss_pred             H--HHhCCEEEEEe
Confidence            5  47899999986

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.09  E-value=1.7e-11  Score=102.82  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=30.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCCcccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCDQLGH  111 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D~i~~  111 (212)
                      .++.+|||+|++||||||+++.|+. +|     +.++++|.+.+
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            4578999999999999999999986 56     78899998765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.06  E-value=1.6e-10  Score=91.09  Aligned_cols=42  Identities=19%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      .+.++.+|+|+|++||||||+++.|+ .+|+.++++|.+.+..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~   53 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAE   53 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHH
Confidence            46678899999999999999999997 6899999988765544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.04  E-value=2.4e-11  Score=119.77  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=103.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++..++|.... ....++++++..++|+++||+|+||||||||+++|.++     |...+++..+.           
T Consensus      1031 i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp             EEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred             EEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence            45666666664221 22467889999999999999999999999999999987     33334432221           


Q ss_pred             ----cc----------cc---cCC----chhHHHHHHHhC---------Ccc---------CCCCCccchHhHHHHhcCC
Q psy17138        111 ----HR----------AY---DVG----TRGNQVVRELFG---------EDI---------ALPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       111 ----~~----------~~---~~~----~~~~~~~~~~~g---------~~~---------~~~~~~~~r~~l~~~vf~~  151 (212)
                          .+          +.   .+.    ........+..+         ...         .-+.|+.+|-.+++.+..+
T Consensus      1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A         1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp             EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence                00          00   000    000111111111         000         0134677888999999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++++.+++...+.+.+.+++... .+.+++-+|.+...   ..||++++++
T Consensus      1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~-~~tvi~isH~l~~i---~~~dri~vl~ 1243 (1284)
T 3g5u_A         1190 PHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLSTI---QNADLIVVIQ 1243 (1284)
T ss_dssp             CSSEEEESCSSSCCHHHHHHHHHHHHHHSS-SSCEEEECSCTTGG---GSCSEEEEEE
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence            98  55788999999999999998877643 45666669998764   3599999886

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.00  E-value=3.9e-10  Score=87.57  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=33.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY  114 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~  114 (212)
                      ++.+|+|+|++||||||+++.|+ .+|+++++.|.+.+...
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~   42 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   42 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence            36799999999999999999997 47999999887655443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.98  E-value=1.7e-10  Score=110.38  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc---CCe--------eeeCC--cc-----cccccc---CC-chhHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL---GAG--------LINCD--QL-----GHRAYD---VG-TRGNQ  122 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~--------vi~~D--~i-----~~~~~~---~~-~~~~~  122 (212)
                      .++++++...+|.+++|+|+||||||||+|+|++-   |..        ++.-+  ..     ..+...   .+ .....
T Consensus       450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~  529 (986)
T 2iw3_A          450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK  529 (986)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHH
T ss_pred             eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHH
Confidence            56778899999999999999999999999999851   111        00000  00     000000   00 11234


Q ss_pred             HHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc
Q psy17138        123 VVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL  192 (212)
Q Consensus       123 ~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~  192 (212)
                      ..++.+|..  ..      -+.|+.+|..|+..+..+|+  +++++.+.+++.....+.+.+.+  . ...+++-+|.+.
T Consensus       530 ~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~-g~tvIivSHdl~  606 (986)
T 2iw3_A          530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--C-GITSITISHDSV  606 (986)
T ss_dssp             HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--S-CSEEEEECSCHH
T ss_pred             HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--C-CCEEEEEECCHH
Confidence            455666752  11      14567789999999999998  56889999999999999999887  2 457777799987


Q ss_pred             ccccccccCeEEEEE
Q psy17138        193 SAKWQDQVHEIWVTF  207 (212)
Q Consensus       193 e~~~~~~~d~v~~v~  207 (212)
                      +.  ..+||+++++.
T Consensus       607 ~l--~~~adrii~L~  619 (986)
T 2iw3_A          607 FL--DNVCEYIINYE  619 (986)
T ss_dssp             HH--HHHCSEEEEEE
T ss_pred             HH--HHhCCEEEEEE
Confidence            64  57899999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.96  E-value=7.7e-10  Score=85.77  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY  114 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~  114 (212)
                      .+.+|+|+|++||||||+++.|+. +|+.+++.|.+.+...
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~   45 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ   45 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHH
Confidence            467999999999999999999985 7999999886655443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.96  E-value=5.1e-10  Score=88.29  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      ..+|.+++|+|+|||||||+++.|++ +|..++++|.+
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~   63 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF   63 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence            34689999999999999999999986 59998888764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.95  E-value=6.3e-10  Score=94.25  Aligned_cols=33  Identities=9%  Similarity=0.023  Sum_probs=28.5

Q ss_pred             CCCcEEEEEeccccc----cccccccCeEEEEEeCCC
Q psy17138        179 ESHKVIVIEAAVLLS----AKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       179 ~~~~~vvie~~~l~e----~~~~~~~d~v~~v~~~~~  211 (212)
                      .+.+++++|++++++    ..+.+++|.+|+|++|.+
T Consensus       193 ~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~  229 (312)
T 3aez_A          193 RHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIE  229 (312)
T ss_dssp             CSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHH
T ss_pred             cCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHH
Confidence            456899999999986    578899999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.94  E-value=1.2e-09  Score=86.90  Aligned_cols=52  Identities=17%  Similarity=0.108  Sum_probs=39.6

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHHHhC
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRELFG  129 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g  129 (212)
                      .|+|+|++||||||+++.|+ .+|+.++++|.+.++...++......+...++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~   54 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID   54 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            58999999999999999995 68999999988777765555444444444443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.93  E-value=2.7e-11  Score=93.68  Aligned_cols=125  Identities=18%  Similarity=0.006  Sum_probs=70.9

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCC------chhHHH------HHHHhCCccC---
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVG------TRGNQV------VRELFGEDIA---  133 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~------~~~~~~------~~~~~g~~~~---  133 (212)
                      +++..++|++++|+|+|||||||+++++.. |..+++.|.+...+....      ...++.      .....|....   
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   80 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK-PTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA   80 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSC-GGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHcc-CCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence            345677899999999999999999996542 334444443321111111      001111      1112232211   


Q ss_pred             ---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH----------------HHHHHHHHHHhhcCCCcEEEEEecccc
Q psy17138        134 ---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL----------------ILAQVKEEIARLSESHKVIVIEAAVLL  192 (212)
Q Consensus       134 ---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~----------------~~~~~~~~i~~~~~~~~~vvie~~~l~  192 (212)
                         ...+..+|..++..+..+|.  +++++.+.++|.                ....+.+.++++......+++.+|.+.
T Consensus        81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A           81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence               11234456678777777776  446677777777                446666666555422445666689887


Q ss_pred             cc
Q psy17138        193 SA  194 (212)
Q Consensus       193 e~  194 (212)
                      ++
T Consensus       161 ~~  162 (171)
T 4gp7_A          161 EV  162 (171)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.92  E-value=2.5e-10  Score=112.85  Aligned_cols=156  Identities=13%  Similarity=0.072  Sum_probs=101.0

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------  109 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------  109 (212)
                      ..+++++++|... .....++++++..++|..++|+|++||||||++++|.++     |...+++-.+            
T Consensus       416 I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i  494 (1321)
T 4f4c_A          416 ITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV  494 (1321)
T ss_dssp             EEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             EEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence            4456666666421 122345778899999999999999999999999999986     3344443221            


Q ss_pred             ---ccccccCCc---------------hhHHH---------HHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138        110 ---GHRAYDVGT---------------RGNQV---------VRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       110 ---~~~~~~~~~---------------~~~~~---------~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~  153 (212)
                         .++.+....               ..+..         .+..+....         .-+.|+.+|-.|++.+..+|+
T Consensus       495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~  574 (1321)
T 4f4c_A          495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK  574 (1321)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred             cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence               111111110               11111         122221110         013467889999999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        ++++..+.+++...+.+.+.+.++.. .+++++-+|-+.-.   ..||++++++
T Consensus       575 IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~i---~~aD~Iivl~  626 (1321)
T 4f4c_A          575 ILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLSTI---RNADLIISCK  626 (1321)
T ss_dssp             EEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTTT---TTCSEEEEEE
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHHH---HhCCEEEEee
Confidence              56778888898888888887876643 45666668887543   5799999885

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.92  E-value=7.1e-11  Score=93.90  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=24.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+|.+++|+||||||||||+++|+++
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999999975

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.91  E-value=2.6e-11  Score=119.81  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=103.8

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ....++++++|+.. .....++++++..++|+.+||+|++||||||++++|.++     |...+|+-++.          
T Consensus      1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            34567777777432 123456788999999999999999999999999999987     55555543321          


Q ss_pred             -----cc----------c--c--cCCchh---HHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcC
Q psy17138        111 -----HR----------A--Y--DVGTRG---NQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFS  150 (212)
Q Consensus       111 -----~~----------~--~--~~~~~~---~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~  150 (212)
                           ++          +  |  .+....   ....++..+.           +. .      -+.|+.+|-.|++.+..
T Consensus      1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred             eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence                 11          1  1  111101   1111111111           10 0      02356788899999999


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|.  ++++.++-+++...+.+.+.+++.. ..+++++-+|=|--.   ..||++++++
T Consensus      1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi---~~aD~I~Vld 1289 (1321)
T 4f4c_A         1235 NPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTV---MNADCIAVVS 1289 (1321)
T ss_dssp             CCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTT---TTCSEEEEES
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHH---HhCCEEEEEE
Confidence            998  5578888899999999988887764 345666668877542   4699999985

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=98.91  E-value=4.7e-10  Score=85.10  Aligned_cols=53  Identities=25%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138          1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL   59 (212)
Q Consensus         1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~   59 (212)
                      +||||+||+.++..+|++|.+.|++||++++++.+. .     .++.++|||++|....
T Consensus        89 ~ivvs~Et~~~~~~l~~~~~~~G~~~l~V~~v~~~~-~-----~~~~~iSST~IR~~~i  141 (148)
T 3do8_A           89 YLVVSPETYEMALKINQKREELGKRKITIVKVDWMM-A-----EDGKPISSTRIKRGEI  141 (148)
T ss_dssp             EEEECTTTHHHHHHHHHHHHHHTCCCCEEEEEECCC-------------CCCCCCCSCC
T ss_pred             EEEEChhhcccHHHHHHHHHHcCCCeeEEEEeccEE-c-----CCCCEEEHHHHHHHHH
Confidence            589999999999999999999999999999999997 3     3678999999998755

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.91  E-value=5.8e-10  Score=88.61  Aligned_cols=41  Identities=27%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGT  118 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~  118 (212)
                      .|+|+|++||||||+++.|+ .+|+.++++|.+.+..+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~   43 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGT   43 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCC
Confidence            58999999999999999995 689999998877766555443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=85.21  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      +.+|+|+|++||||||+++.|+. +|+.+++.|.+.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~   49 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLRE   49 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHH
Confidence            57899999999999999999985 79999998866544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.90  E-value=3e-10  Score=105.25  Aligned_cols=68  Identities=6%  Similarity=0.013  Sum_probs=54.7

Q ss_pred             CCccchHhHHHHhcCChH----HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD----EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~----~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .|+.+|..|+..+.++|+    +++++.+.++|.....+.+.++++......+++-+|.+...   ..||+++++
T Consensus       205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~ii~l  276 (670)
T 3ux8_A          205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM---LAADYLIDI  276 (670)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH---HHCSEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH---hhCCEEEEe
Confidence            356788899999999876    55889999999999999999988763345677779998653   469999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.89  E-value=3e-11  Score=119.11  Aligned_cols=156  Identities=13%  Similarity=0.091  Sum_probs=102.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      ..+++.+++|... .....++++++..++|++++|+|+||||||||+++|.++     |...+++..+.           
T Consensus       388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  466 (1284)
T 3g5u_A          388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII  466 (1284)
T ss_dssp             EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence            4566777776422 122456778999999999999999999999999999986     33344432221           


Q ss_pred             ----cccccCCc---------------hhHH---------HHHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138        111 ----HRAYDVGT---------------RGNQ---------VVRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 ----~~~~~~~~---------------~~~~---------~~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~  153 (212)
                          ++.+....               ....         ..+..++...         .-+.|+.+|-.|++.+..+|+
T Consensus       467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~  546 (1284)
T 3g5u_A          467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK  546 (1284)
T ss_dssp             EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence                11110000               0011         1112221110         013467788899999999998


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++.+.+++...+.+.+.++.... .+++++-+|-+...   ..||++++++
T Consensus       547 iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~i---~~~d~i~vl~  598 (1284)
T 3g5u_A          547 ILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHRLSTV---RNADVIAGFD  598 (1284)
T ss_dssp             EEEEESTTCSSCHHHHHHHHHHHHHHHT-TSEEEEECSCHHHH---TTCSEEEECS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence              56788889999988888888876644 45677779998764   3499999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.88  E-value=1e-09  Score=83.59  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~  111 (212)
                      +|+|+|++||||||+++.|+. +|++++++|.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~   36 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQ   36 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHH
Confidence            689999999999999999986 7999999876543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=2.9e-09  Score=83.88  Aligned_cols=45  Identities=27%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQ  108 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~  108 (212)
                      .+.+++++...++.+|+|+|++||||||+++.|++ +|+.+++.|.
T Consensus        13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~   58 (199)
T 3vaa_A           13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW   58 (199)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence            34566788888899999999999999999999984 7888888764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.82  E-value=4.5e-10  Score=107.40  Aligned_cols=68  Identities=10%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +.|+.+|-.|+..+.++|+  +++++.+.+++.....+.+.+++.  + ..+++-+|.+.+.  ..+||++|++.
T Consensus       903 SGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g-~tVIiISHD~e~v--~~l~DrVivL~  972 (986)
T 2iw3_A          903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--E-GGVIIITHSAEFT--KNLTEEVWAVK  972 (986)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--S-SEEEEECSCHHHH--TTTCCEEECCB
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--C-CEEEEEECCHHHH--HHhCCEEEEEE
Confidence            3467778899999999998  568899999999999888888764  2 4677779998764  47899999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.82  E-value=1e-09  Score=101.67  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CCccchHhHHHHhcCChH-----HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        136 DGSIDRKKLGAIVFSNKD-----EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       136 ~~~~~r~~l~~~vf~~~~-----~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      .|+.+|..|+..+.++|.     +++++.+.++|.....+.+.++++......+++-+|.+..+   ..||+++++
T Consensus       546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~i~~l  618 (670)
T 3ux8_A          546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI---KTADYIIDL  618 (670)
T ss_dssp             HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH---HhCCEEEEe
Confidence            467789999999888763     56889999999999999999988763355777779998754   469999987

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.81  E-value=1.1e-08  Score=79.35  Aligned_cols=31  Identities=35%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-c---CCeeeeCCc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-L---GAGLINCDQ  108 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-l---g~~vi~~D~  108 (212)
                      +|+|+|++||||||+++.|+. +   |++++++|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~   36 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE   36 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            689999999999999999985 3   899998874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.81  E-value=4.6e-09  Score=85.57  Aligned_cols=45  Identities=20%  Similarity=0.042  Sum_probs=37.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCch
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTR  119 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~  119 (212)
                      ++.+|+|+|++||||||+++.|+ .+|+.++++|.+.+....++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~   73 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE   73 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch
Confidence            57899999999999999999997 5899999988777765555443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.79  E-value=1.4e-08  Score=82.42  Aligned_cols=137  Identities=12%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cCC-chhHHHHHHHhCCccCCCCCccchH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DVG-TRGNQVVRELFGEDIALPDGSIDRK  142 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~~~~~r~  142 (212)
                      ..++.+++|+||+||||||+++.|+ .+|+.+++.|.+.+.+.        ... ......+...+...+....+. ++.
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~-~~v   84 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDV-DAA   84 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTS-CCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCC-cEE
Confidence            3457899999999999999999997 57999999887644321        010 111222333222111100000 000


Q ss_pred             hHHH-Hh---cCChHHHHHH-HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        143 KLGA-IV---FSNKDEMNKL-NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       143 ~l~~-~v---f~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+.. -+   ...+..-... .-..+|.+++.+.+..+++.....-+|+++..+-..-+ ...|..+|+++|.+
T Consensus        85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~-pda~lkifl~A~~e  157 (233)
T 3r20_A           85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVL-PDADVKIFLTASAE  157 (233)
T ss_dssp             EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCC-TTCSEEEEEECCHH
T ss_pred             EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEc-CCCCEEEEEECCHH
Confidence            0000 00   0000000000 01235777777766666554331457778886543212 23689999999865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.78  E-value=9.8e-09  Score=79.85  Aligned_cols=38  Identities=26%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR  112 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~  112 (212)
                      ++.+|+|+|++||||||+++.|+ .+|+.+++.|.+.+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~   46 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRS   46 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHH
Confidence            47799999999999999999998 579999998865544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.74  E-value=4e-09  Score=83.00  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      .+.+|+|+|++||||||+++.|++ +|+.++++|.+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~   52 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL   52 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence            467899999999999999999975 69999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.67  E-value=7.2e-09  Score=80.63  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=35.7

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHR  112 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~  112 (212)
                      .+..+.++..|+|+|++||||||+++.|+..  |++++++|.+.++
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~   48 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   48 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence            3455667889999999999999999999865  9999998876554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.65  E-value=1.5e-08  Score=88.81  Aligned_cols=126  Identities=11%  Similarity=0.045  Sum_probs=78.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------------cccc--ccCCchhHHHHHHHhCCccCC
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------------GHRA--YDVGTRGNQVVRELFGEDIAL  134 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------------~~~~--~~~~~~~~~~~~~~~g~~~~~  134 (212)
                      ++||+|+||||||||+++|.++     |...++...+                ..+.  +...........+.++..-..
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~  150 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD  150 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence            9999999999999999999985     3222221110                0010  000112345566666543211


Q ss_pred             -----CCC--ccchHhHHHHhcC----------ChH--HHHHHHhhhhHHHHHHHHHHHHhhc---------CCCcEEEE
Q psy17138        135 -----PDG--SIDRKKLGAIVFS----------NKD--EMNKLNQAIWPLILAQVKEEIARLS---------ESHKVIVI  186 (212)
Q Consensus       135 -----~~~--~~~r~~l~~~vf~----------~~~--~~~~~~~i~~p~~~~~~~~~i~~~~---------~~~~~vvi  186 (212)
                           +.|  +.+|..++..+.+          +|+  +++++.+.++|.....+.+.+++..         ....++++
T Consensus       151 ~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iili  230 (413)
T 1tq4_A          151 FFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL  230 (413)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEEC
T ss_pred             CeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence                 223  5667777777777          777  4577777777777777766665541         12468889


Q ss_pred             EeccccccccccccCeE
Q psy17138        187 EAAVLLSAKWQDQVHEI  203 (212)
Q Consensus       187 e~~~l~e~~~~~~~d~v  203 (212)
                      .+|.+.+.++.++||++
T Consensus       231 Ssh~l~~~~~e~L~d~I  247 (413)
T 1tq4_A          231 SNKNVCHYDFPVLMDKL  247 (413)
T ss_dssp             CTTCTTSTTHHHHHHHH
T ss_pred             ecCcCCccCHHHHHHHH
Confidence            99998876777777764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.64  E-value=3e-08  Score=76.05  Aligned_cols=37  Identities=32%  Similarity=0.295  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      .+|.+++|+|+|||||||+++.|++ +|..++++|.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence            4589999999999999999999986 599999988754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.61  E-value=1.5e-08  Score=81.24  Aligned_cols=36  Identities=19%  Similarity=0.066  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++++++...+|.+++|+||||||||||+++|.++
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345678888999999999999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.60  E-value=1.7e-08  Score=77.09  Aligned_cols=35  Identities=34%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      +.+|+|+|+|||||||++++|++ +++.++++|.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~   39 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI   39 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHH
Confidence            56899999999999999999997 688888877543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.59  E-value=2.1e-08  Score=76.47  Aligned_cols=39  Identities=26%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      ..+.+|+|+|++||||||+++.|+. +|++++++|.+.++
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~   44 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE   44 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            4578999999999999999999986 79999998865443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.57  E-value=9.1e-08  Score=82.28  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCC--CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPY--PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~--~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...||||.+|....    .....+++...+  +..++|+|+||||||||+++|+++
T Consensus       142 ~~~iSsT~IRe~~~----~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          142 FFNVSATKIRTTPF----QYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             SSCCCHHHHHHCGG----GGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHhChh----hChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            45799999987532    123457788888  999999999999999999999987

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.56  E-value=1.4e-08  Score=88.44  Aligned_cols=68  Identities=13%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             CCCccchHhHHHHhcCCh--H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        135 PDGSIDRKKLGAIVFSNK--D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~--~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +.|+.+|-.|+..+.++|  .  +++++.+.+++.....+.+.++++. ....|++-+|.+..   .++||+++++
T Consensus       297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~---~~~~d~i~~l  368 (415)
T 4aby_A          297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQI---AARAHHHYKV  368 (415)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHH---HTTCSEEEEE
T ss_pred             CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH---HhhcCeEEEE
Confidence            345666778888888888  6  5688899999999999999998875 34566666998743   3579999988

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.55  E-value=3.9e-08  Score=75.98  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA  113 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~  113 (212)
                      +|.+|+|+|++||||||+++.|+ .+|+.++++|.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~   42 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDH   42 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence            57899999999999999999997 5799999987665543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.54  E-value=3.7e-08  Score=77.16  Aligned_cols=27  Identities=11%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+|.+++|+|||||||||++++|+++
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            446899999999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.53  E-value=8.6e-08  Score=75.00  Aligned_cols=33  Identities=18%  Similarity=0.076  Sum_probs=27.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL--GAGLINCD  107 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D  107 (212)
                      +|.+|+|+|++||||||+++.|+..  |+.+++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            4789999999999999999999864  57666643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.53  E-value=5.1e-08  Score=75.59  Aligned_cols=37  Identities=38%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc---CCeeeeCCcc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL---GAGLINCDQL  109 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~vi~~D~i  109 (212)
                      ..+|.+++|+|+|||||||++++|+++   |...++.|.+
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            557899999999999999999999975   3346677654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.52  E-value=4.3e-08  Score=77.57  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      ...+|++++|+|||||||||++++|.++-
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57789999999999999999999999863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.51  E-value=1.8e-07  Score=74.94  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=31.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY  114 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~  114 (212)
                      +|.|+|++||||||+++.|+. +|+.++++|.+.++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~   39 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHI   39 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHH
Confidence            689999999999999999984 7999999877665543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.51  E-value=2.5e-08  Score=80.16  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLG  100 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg  100 (212)
                      -..++++...+|.+++|+|||||||||++++|. ++.
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345577888999999999999999999999999 874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.51  E-value=3.3e-08  Score=75.58  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+.+++...+|.+++|+||||||||||+|+|+++
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34456677889999999999999999999999986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.49  E-value=7.7e-09  Score=84.89  Aligned_cols=49  Identities=29%  Similarity=0.390  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCC---CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc
Q psy17138         65 PVQPKPHLSPY---PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA  113 (212)
Q Consensus        65 ~~~~~~~~~~~---~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~  113 (212)
                      .++++++...+   +.+|+|+|++||||||++++|++ +|+.++++|.+.+..
T Consensus        34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~   86 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA   86 (250)
T ss_dssp             HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence            34455666666   89999999999999999999986 899999988655443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.49  E-value=5.9e-08  Score=77.01  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++|.+++|+|+|||||||+++.|++.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.49  E-value=8.3e-08  Score=86.48  Aligned_cols=133  Identities=9%  Similarity=-0.121  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc----CCe--eeeCCccccccc----cCCchhHHHHHHHhCCccC-C------
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL----GAG--LINCDQLGHRAY----DVGTRGNQVVRELFGEDIA-L------  134 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~--vi~~D~i~~~~~----~~~~~~~~~~~~~~g~~~~-~------  134 (212)
                      ...+|.+++|+|+||||||||++.|+++    |..  ++....-...+.    ..+.. ...+. .+|...+ .      
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~-~~~~~-~~g~~~~~~~~p~~L  354 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD-FEEME-RQNLLKIVCAYPESA  354 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC-HHHHH-HTTSEEECCCCGGGS
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC-HHHHH-hCCCEEEEEeccccC
Confidence            5678999999999999999999999875    321  222211100000    00000 01111 1121111 1      


Q ss_pred             CCCccchHhHHHHhcCChH--HHHHHHhhhhHH-----HHHHHHHHHHhhcCCCcEEEEEecccc-c-------cccccc
Q psy17138        135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL-----ILAQVKEEIARLSESHKVIVIEAAVLL-S-------AKWQDQ  199 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~-----~~~~~~~~i~~~~~~~~~vvie~~~l~-e-------~~~~~~  199 (212)
                      +.++.+|..++.+...+|+  .++ +.+.+++.     .+..+.+.++.++.....+++.+|... +       ..+..+
T Consensus       355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~  433 (525)
T 1tf7_A          355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI  433 (525)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee
Confidence            2234556667766666776  345 56666666     777777777766533456677788871 1       224568


Q ss_pred             cCeEEEEE
Q psy17138        200 VHEIWVTF  207 (212)
Q Consensus       200 ~d~v~~v~  207 (212)
                      ||+++++.
T Consensus       434 ~D~vi~L~  441 (525)
T 1tf7_A          434 TDTIILLQ  441 (525)
T ss_dssp             CSEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999775

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.48  E-value=4e-08  Score=93.70  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=53.6

Q ss_pred             CCCccchHhHHHHhcCCh---H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        135 PDGSIDRKKLGAIVFSNK---D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       135 ~~~~~~r~~l~~~vf~~~---~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      +.|+.+|-.|+..+.++|   .  +++++++.+|+...+.+.+.+.++......|++-+|.+...   ..||+++++
T Consensus       807 SGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i---~~ADrIivL  880 (916)
T 3pih_A          807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVI---KNADHIIDL  880 (916)
T ss_dssp             CHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH---HhCCEEEEe
Confidence            346778999998888765   3  56889999999999999999887763345666668998654   359999887

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.47  E-value=4.6e-08  Score=93.27  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             CccchHhHHHHhcCCh---H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        137 GSIDRKKLGAIVFSNK---D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       137 ~~~~r~~l~~~vf~~~---~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      |+.+|..|+..+..+|   .  +++++.+.+++.....+.+.+.++......|++-+|.+.+.   ..||+++++
T Consensus       849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i---~~aDrIivL  920 (972)
T 2r6f_A          849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI---KTADYIIDL  920 (972)
T ss_dssp             HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH---HhCCEEEEE
Confidence            5677889998888765   4  66889999999999999999988763345677779998764   479999988

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.47  E-value=1.3e-08  Score=96.32  Aligned_cols=67  Identities=9%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CccchHhHHHHhcCC---hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        137 GSIDRKKLGAIVFSN---KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       137 ~~~~r~~l~~~vf~~---~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      |+.+|-.|+..+..+   |.  +++++.+.+++.....+.+.+.++......|++-+|.+.+.   ..||+++++
T Consensus       734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i---~~aDrii~L  805 (842)
T 2vf7_A          734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV---AASDWVLDI  805 (842)
T ss_dssp             HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH---HhCCEEEEE
Confidence            566788899888886   35  66889999999999999999988763355677779998764   479999987

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.46  E-value=1.1e-07  Score=72.17  Aligned_cols=35  Identities=29%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH  111 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~  111 (212)
                      .+|+|+|++||||||+++.|+. +|+++++.|.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~   37 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFEL   37 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccccc
Confidence            5799999999999999999974 6999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.46  E-value=1.5e-07  Score=74.06  Aligned_cols=34  Identities=29%  Similarity=0.204  Sum_probs=27.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCC
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCD  107 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D  107 (212)
                      .+|.+|+|+|++||||||+++.|+. ++...++.|
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            3578999999999999999999985 554444443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.44  E-value=1.3e-07  Score=74.24  Aligned_cols=40  Identities=30%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      ..++.+|+|+|++||||||+++.|+. +|+++++.|.+.++
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~   57 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR   57 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence            45578999999999999999999985 79999998766554

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.44  E-value=1.8e-07  Score=84.74  Aligned_cols=96  Identities=20%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHCCCCCccEEEeecccC-------CCCCC-cccccceechhhhhh-hhccccCCCCCC-------------
Q psy17138         12 GVKVNELRVANSLKPLDVVSVPLLPS-------DGKVD-EQEEDKLSSSNLRMR-ELGTLRKPVQPK-------------   69 (212)
Q Consensus        12 ~~~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~-~~~~~~iss~~~r~~-~~g~~l~~~~~~-------------   69 (212)
                      ..-+.+...+.|++|+.+....|...       +..+. ......||++.+|.. ..... .+|...             
T Consensus       287 ~~~~~~~~~~lgi~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~-~~p~~~~r~eV~~~lr~~~  365 (546)
T 2gks_A          287 QELFKKYEDEIGIKMVPFEELVYVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGR-KLPEWFTRPEVAEILAETY  365 (546)
T ss_dssp             HHHHHHHHHHHTCEEEECCCCEEETTTTEEECSCC---------------CTHHHHTTTC-CCCTTTSCHHHHHHHHHHS
T ss_pred             HHHHHhcccccCceEEeccceEEEcCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCC-CCCccccchhHHHHHHHhh
Confidence            34456666788999988888777652       11222 344567999999887 43222 232211             


Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCCc
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCDQ  108 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D~  108 (212)
                      +.....+.+|.++|++||||||+++.|+. ++     +.++++|.
T Consensus       366 ~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          366 VPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             CCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             ccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            11234578999999999999999999985 43     24556554

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.42  E-value=9e-08  Score=82.54  Aligned_cols=68  Identities=10%  Similarity=-0.020  Sum_probs=49.2

Q ss_pred             CccchHhHHHHhc------CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        137 GSIDRKKLGAIVF------SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       137 ~~~~r~~l~~~vf------~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+.+|..++..+.      ++|+  +++++.+.++|.....+.+.+.++......+++-+|.+..   ...||+++++.
T Consensus       283 Ge~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~---~~~~d~~~~l~  358 (365)
T 3qf7_A          283 GERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF---SEAFDRKLRIT  358 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH---HTTCSCEEEEE
T ss_pred             HHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH---HHhCCEEEEEE
Confidence            3445555554444      5665  5577888899999999999998876445677777998865   35799999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.40  E-value=1.5e-07  Score=73.93  Aligned_cols=39  Identities=33%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc----CCe--eeeCCcccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAG--LINCDQLGH  111 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~--vi~~D~i~~  111 (212)
                      ..+|.+|+|+|+|||||||+++.|+++    |..  +++.|.+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH   66 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence            466999999999999999999999863    555  777776543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.38  E-value=1.3e-07  Score=71.49  Aligned_cols=32  Identities=41%  Similarity=0.444  Sum_probs=28.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      .+|+|+|++||||||+++.|..+|+.+++.|.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~   33 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSD   33 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTCEEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCCCcEEEHhH
Confidence            47999999999999999999778999988654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.37  E-value=8.9e-08  Score=73.93  Aligned_cols=36  Identities=39%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      .+|+|+|++||||||+++.|+. +|++++++|.+.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~   39 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ   39 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence            4699999999999999999985 79999998865443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.37  E-value=3e-08  Score=83.61  Aligned_cols=46  Identities=15%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.+++++|.     ...++++++..++|.+++|+||||||||||+++|.++
T Consensus       104 ~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          104 YQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            444555553     1245567788999999999999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.36  E-value=1.4e-07  Score=85.65  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             HHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCCC-------------CCCCC
Q psy17138         15 VNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQPK-------------PHLSP   74 (212)
Q Consensus        15 in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~~-------------~~~~~   74 (212)
                      +.+...+.|++|+.+....|...       +..+.......||++.+|+...... .+|...             +....
T Consensus       289 ~~~~~~~l~i~pv~f~~~~y~~~~g~~~~~d~~~~~~~~~~isgt~ir~~Lr~G~-~~p~~f~~peV~~vLR~~~~~~~~  367 (552)
T 3cr8_A          289 VAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQGARLLTLSGEEFQRRMRAGL-KIPEWYSFPEVLAELHRQTPPRER  367 (552)
T ss_dssp             SHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCTTCCEECCCHHHHHHHHTTTC-CCCTTTSCHHHHHHHHHHSCCGGG
T ss_pred             HHhhhhhcCCeeeeccceEEecCCCeEEecccCCCCcccccCCHHHHHHHHhcCC-CCCccccccchhhhhhhhcccccc
Confidence            34455678999999988877762       1123344556799999988754222 222111             12356


Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc-----C--CeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL-----G--AGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l-----g--~~vi~~D~i  109 (212)
                      +|.+++|+|+|||||||++++|+++     |  ..+++.|.+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            8999999999999999999999964     2  234676654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.36  E-value=2.4e-07  Score=73.73  Aligned_cols=39  Identities=21%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      .+|.+|.|+|++||||||+++.|+. +|+.+++.|.+.++
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~   41 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS   41 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence            4578999999999999999999984 79999998765554

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.34  E-value=1.3e-07  Score=71.95  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      +.+|+|+|++||||||+++.|+. +|++++++|.+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~   36 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIF   36 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence            35799999999999999999985 79999987754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.33  E-value=2.7e-07  Score=71.44  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+|.+++|+||||||||||++.|.++
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45889999999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.32  E-value=3.7e-07  Score=70.22  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----CCeee--eCCccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----GAGLI--NCDQLG  110 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi--~~D~i~  110 (212)
                      .+|.+|+|+|++||||||+++.|++.    |++++  ++|.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~   45 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR   45 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence            45899999999999999999999874    87766  444443

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.32  E-value=2.4e-07  Score=71.43  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      +..|.|+|++||||||+++.|+ .+|++++++|.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~   41 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIE   41 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence            5689999999999999999997 47999999886543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.31  E-value=8.9e-07  Score=74.45  Aligned_cols=33  Identities=21%  Similarity=0.077  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++...+|.+++|+|+|||||||+++.|+++
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356777889999999999999999999999975

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.30  E-value=3.1e-07  Score=73.75  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=24.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      -++|.+++|+||||||||||+++|.++-
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            4569999999999999999999999863

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.29  E-value=1.1e-07  Score=91.01  Aligned_cols=129  Identities=9%  Similarity=-0.035  Sum_probs=69.6

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH------cCCeeeeC-Cc--cccccccCCchhHHHHHHHhCCccCCC
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET------LGAGLINC-DQ--LGHRAYDVGTRGNQVVRELFGEDIALP  135 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~------lg~~vi~~-D~--i~~~~~~~~~~~~~~~~~~~g~~~~~~  135 (212)
                      .++++++...+|.+++|+|||||||||++|+++.      .|..+... ..  +...++..-+ ..+.+..  +  .  +
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig-~~d~l~~--~--l--S  723 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVG-AGDSQLK--G--V--S  723 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC----------------C
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcC-chhhHHH--h--H--h
Confidence            3455677778899999999999999999999943      24322110 00  0011111000 0000000  0  0  1


Q ss_pred             CCccchHhHHHHh--cCChH--HHHHHHhhhhHHHHHHH-HHHHHhhc-CCCcEEEEEeccccccccccccCeE
Q psy17138        136 DGSIDRKKLGAIV--FSNKD--EMNKLNQAIWPLILAQV-KEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEI  203 (212)
Q Consensus       136 ~~~~~r~~l~~~v--f~~~~--~~~~~~~i~~p~~~~~~-~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v  203 (212)
                      .++..+..++.++  ..+|+  +++++...++|.-...+ +..++.+. .....+++.+|+..-+   .+||++
T Consensus       724 tf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~---~lad~~  794 (934)
T 3thx_A          724 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT---ALANQI  794 (934)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG---GGGGTC
T ss_pred             hhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH---HHhccc
Confidence            1122344444444  56666  45677777888766666 44555544 3356777889985433   456654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.28  E-value=2.2e-07  Score=74.11  Aligned_cols=114  Identities=15%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----CCee---eeCC--ccccc-cccCCchhHHHH-------HHHhCC-cc---
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----GAGL---INCD--QLGHR-AYDVGTRGNQVV-------RELFGE-DI---  132 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~~v---i~~D--~i~~~-~~~~~~~~~~~~-------~~~~g~-~~---  132 (212)
                      .+|.+++|+||||||||||+++|+++    |...   +...  ...+. .|.++.. .+.+       ...... ..   
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~~~~~~~~~~~~~~~~~~~   98 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKIDPYLRPLHDALRDMVEPEV   98 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCTTH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHHHHHHHHHHHHHHhccHHH
Confidence            56899999999999999999999987    2111   1100  01111 1222110 0000       000000 00   


Q ss_pred             ----C-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccc
Q psy17138        133 ----A-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA  194 (212)
Q Consensus       133 ----~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~  194 (212)
                          + ...|+.+|..++..+..+|+  +++++.+.    ....+.+.+.++ .....++ .+|.+.+.
T Consensus        99 ~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~  161 (208)
T 3b85_A           99 IPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQV  161 (208)
T ss_dssp             HHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----
T ss_pred             HHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHH
Confidence                0 01166777788888888887  44556555    556666667665 3445666 78887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.28  E-value=3.5e-07  Score=70.72  Aligned_cols=37  Identities=35%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      .++.+|.|+|++||||||+++.|+. +|+.+++.|.+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~   40 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK   40 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence            3578999999999999999999985 799999887654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.28  E-value=2.6e-07  Score=72.70  Aligned_cols=25  Identities=36%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +|.+++|+||||||||||+++|.++
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4778999999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.28  E-value=2.8e-07  Score=70.41  Aligned_cols=34  Identities=38%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH--cCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET--LGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~--lg~~vi~~D~i  109 (212)
                      +.+|.|.|++||||||+++.|+.  +|+.+++.|.+
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~   37 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY   37 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH
Confidence            46899999999999999999986  68888887654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.25  E-value=3.4e-07  Score=70.20  Aligned_cols=33  Identities=36%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      ..|.|+|++||||||+++.|+. +|+++++.|.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~   38 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL   38 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence            4689999999999999999984 79999887753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.25  E-value=2.3e-08  Score=85.89  Aligned_cols=28  Identities=36%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGL  103 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~v  103 (212)
                      ...++|+|++||||||++++|++ +++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34599999999999999999985 45444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.24  E-value=4e-07  Score=73.81  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=27.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCD  107 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D  107 (212)
                      +|.+++|+|+|||||||++++|+ .+|...++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G   59 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG   59 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence            47899999999999999999998 4566555543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.24  E-value=7e-07  Score=70.67  Aligned_cols=27  Identities=22%  Similarity=0.218  Sum_probs=24.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++|.+++|+|||||||||+++.|.+.
T Consensus         5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            5 TERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            456899999999999999999999976

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.24  E-value=5e-07  Score=70.17  Aligned_cols=61  Identities=5%  Similarity=-0.129  Sum_probs=38.8

Q ss_pred             CccchHhHHHH-----hcCChH--HHHH--HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEec---cccccccccccCe
Q psy17138        137 GSIDRKKLGAI-----VFSNKD--EMNK--LNQAIWPLILAQVKEEIARLSESHKVIVIEAA---VLLSAKWQDQVHE  202 (212)
Q Consensus       137 ~~~~r~~l~~~-----vf~~~~--~~~~--~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~---~l~e~~~~~~~d~  202 (212)
                      |+.+|..++..     +..+|+  ++++  +.+.++|...+.+.+.+.+   ....+++.+|   .+...  ..+||+
T Consensus        80 G~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~--~~i~~r  152 (178)
T 1ye8_A           80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLV--KEIRRL  152 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHH--HHHHTC
T ss_pred             HHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHH--HHHHhc
Confidence            44556667764     678887  4577  7788899988888877754   2343555564   43322  346776

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.22  E-value=6.3e-07  Score=71.67  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=32.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR  112 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~  112 (212)
                      .++.+|.|+|++||||||+++.|+ .+|+.+++.|.+.+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~   44 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD   44 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence            346889999999999999999997 689999988765443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.21  E-value=1.1e-06  Score=71.82  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      +.++.|+|++||||||+++.|+ .+++.+++.|.+
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~   35 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV   35 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence            3579999999999999999997 579999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.19  E-value=1.9e-06  Score=74.10  Aligned_cols=32  Identities=22%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++...+|.+++|+|+|||||||+++.|+++
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            46777889999999999999999999999975

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.19  E-value=4.1e-07  Score=70.14  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=27.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D  107 (212)
                      +.+|.|+|++||||||+++.|+. ++     +.+++.|
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            57899999999999999999985 66     7777654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.19  E-value=6.2e-07  Score=68.92  Aligned_cols=36  Identities=36%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .++.+|.|+|++||||||+++.|+ .+|+.+++.|.+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~   45 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL   45 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH
Confidence            346788999999999999999997 569998887754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.19  E-value=8.3e-07  Score=71.35  Aligned_cols=41  Identities=22%  Similarity=0.124  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR  112 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~  112 (212)
                      ...++.+|.|+|++||||||+++.|+ .+++.++++|.+.++
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~   53 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA   53 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence            35567899999999999999999998 589999998765444

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.18  E-value=9.2e-07  Score=68.48  Aligned_cols=35  Identities=31%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c-CCeeeeCCccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L-GAGLINCDQLG  110 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi~~D~i~  110 (212)
                      |.+++|+|+|||||||+++.|++ + |..+++.|.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~   38 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN   38 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchh
Confidence            57899999999999999999986 3 33667776553

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.17  E-value=6.5e-07  Score=79.53  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----C-C-eeeeCC
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----G-A-GLINCD  107 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g-~-~vi~~D  107 (212)
                      +++...+|.+++|+||||||||||+|+|+++     | . ..++.|
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~  176 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD  176 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence            4556778999999999999999999999987     6 5 556654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.17  E-value=1.7e-06  Score=68.05  Aligned_cols=26  Identities=27%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.+++|+|+|||||||+++.|+.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            55689999999999999999999975

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.16  E-value=1.4e-06  Score=77.84  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+++++...+|.+++|+|+|||||||+++.|+++
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence            3567788899999999999999999999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.15  E-value=1.1e-06  Score=72.26  Aligned_cols=27  Identities=30%  Similarity=0.188  Sum_probs=24.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+|.+++|+|||||||||++++|.++
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence            567999999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.15  E-value=1e-06  Score=69.87  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++|.+++|+||||||||||+++|+++
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999999999999974

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.14  E-value=8.5e-07  Score=75.43  Aligned_cols=115  Identities=12%  Similarity=0.015  Sum_probs=64.1

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccC-CchhHHHHHHHhCCccCCCCCccchH
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDV-GTRGNQVVRELFGEDIALPDGSIDRK  142 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~r~  142 (212)
                      +++....|.+++|+|+|||||||++++|.++     |...++...   +...+ ....    +     .+....+...|.
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~---e~~~~~~~~~----i-----~~~~ggg~~~r~  231 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE---EIVFKHHKNY----T-----QLFFGGNITSAD  231 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC---CCCCSSCSSE----E-----EEECBTTBCHHH
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee---ccccccchhE----E-----EEEeCCChhHHH
Confidence            4455667899999999999999999999986     323333211   10000 0000    0     000014556677


Q ss_pred             hHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEE
Q psy17138        143 KLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWV  205 (212)
Q Consensus       143 ~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~  205 (212)
                      .++..+.++|+.  ++++..   .    ++.+.++.+..++..+++.+|.+.   ..+.||++++
T Consensus       232 ~la~aL~~~p~ilildE~~~---~----e~~~~l~~~~~g~~tvi~t~H~~~---~~~~~dri~~  286 (330)
T 2pt7_A          232 CLKSCLRMRPDRIILGELRS---S----EAYDFYNVLCSGHKGTLTTLHAGS---SEEAFIRLAN  286 (330)
T ss_dssp             HHHHHTTSCCSEEEECCCCS---T----HHHHHHHHHHTTCCCEEEEEECSS---HHHHHHHHHH
T ss_pred             HHHHHhhhCCCEEEEcCCCh---H----HHHHHHHHHhcCCCEEEEEEcccH---HHHHhhhhee
Confidence            888888888873  232222   2    233445444445556777788754   2345555443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.12  E-value=1.1e-06  Score=70.71  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      ...+|.+|+|.|++||||||++++|++++
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~   44 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK   44 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhcc
Confidence            35679999999999999999999999874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.12  E-value=8e-07  Score=70.68  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH  111 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~  111 (212)
                      +|.+|.|+|++||||||+++.|+. +|+.+++.|.+.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~   41 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLR   41 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHH
Confidence            467899999999999999999975 8999999876544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.11  E-value=1.1e-06  Score=68.97  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      |.+++|+|+|||||||++++|+++
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhh
Confidence            467999999999999999999975

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.10  E-value=2.5e-06  Score=65.14  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=26.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeee--eCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI--NCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~  108 (212)
                      +.+|.|+|++||||||+++.|+. ++..++  +.|.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~   38 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS   38 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence            56899999999999999999985 555444  4553

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.09  E-value=1.5e-06  Score=66.67  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLI  104 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi  104 (212)
                      .+|.+|.|+|++||||||+++.|+ .+|.+++
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            357899999999999999999998 5788776

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.09  E-value=7.1e-07  Score=85.19  Aligned_cols=126  Identities=8%  Similarity=0.026  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcc----ccccccCCchhHHHHHHHhCCccC
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQL----GHRAYDVGTRGNQVVRELFGEDIA  133 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i----~~~~~~~~~~~~~~~~~~~g~~~~  133 (212)
                      ..++++++...+|.+++|+|||||||||++|++..+      |..+. +...    ...++..-+ ..+.+ . .+...+
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp-a~~~~i~~~d~i~~~ig-~~d~l-~-~~~stf  736 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP-AEEATIGIVDGIFTRMG-AADNI-Y-KGRSTF  736 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS-SSEEEEECCSEEEEEC-------------CCH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc-chhhhhhHHHHHHHhCC-hHHHH-H-HhHHHh
Confidence            456778888899999999999999999999998743      33221 1100    011111000 00000 0 000000


Q ss_pred             CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH-HHHHhhc-CCCcEEEEEeccccccc
Q psy17138        134 LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK-EEIARLS-ESHKVIVIEAAVLLSAK  195 (212)
Q Consensus       134 ~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~-~~i~~~~-~~~~~vvie~~~l~e~~  195 (212)
                       ..++.++..+... ..+|+  +++++...++|.....+. ..++.+. .....+++.+|++.-+.
T Consensus       737 -s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          737 -MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             -HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             -hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence             0112222233222 45665  457778888888776665 4555543 34567778899975443

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.08  E-value=1.2e-06  Score=69.71  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      +|.+|.|+|++||||||+++.|+ .++..+++.|.+.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~   41 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLR   41 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHH
Confidence            56789999999999999999997 57888888765443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.08  E-value=3.3e-06  Score=67.71  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      ...++.+|.|+||+||||+|.++.|+ .+|++++++..+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdl   63 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDL   63 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHH
Confidence            35678899999999999999999997 579998886443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.07  E-value=3.7e-06  Score=75.51  Aligned_cols=97  Identities=13%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHCCCCCccEEEeecccCC-------CCCC-cccccceechhhhhhhhccccCCCCC-------------C
Q psy17138         11 GGVKVNELRVANSLKPLDVVSVPLLPSD-------GKVD-EQEEDKLSSSNLRMRELGTLRKPVQP-------------K   69 (212)
Q Consensus        11 ~~~~in~~r~~~gl~~l~~~~i~~~~~~-------~~~~-~~~~~~iss~~~r~~~~g~~l~~~~~-------------~   69 (212)
                      +-.-..+...+.|++||.+....|-...       ..+. ..+-..+|++.+|....... .+|+.             .
T Consensus       310 aq~i~~~~~~~l~i~pv~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~-~~P~~f~rpeV~~vLr~~~  388 (511)
T 1g8f_A          310 AQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGG-EIPEWFSYPEVVKILRESN  388 (511)
T ss_dssp             HHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTC-CCCTTTSCHHHHHHHHHHS
T ss_pred             HHHHHHhCccccCceEEeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCC-CCCccccChhhHHHHHHhc
Confidence            3445566667889999988888776621       1122 13446799999988754222 23221             1


Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCC-------eeeeCCc
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGA-------GLINCDQ  108 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~-------~vi~~D~  108 (212)
                      +....++..|.|+|.+||||||+++.|+ .|+.       .++|+|.
T Consensus       389 ~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          389 PPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            1123578999999999999999999998 4554       5667775

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.07  E-value=2.9e-06  Score=69.15  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cC--CeeeeCCcccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LG--AGLINCDQLGH  111 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg--~~vi~~D~i~~  111 (212)
                      ..+|.++.|+|++||||||+++.|+. ++  +.++++|.+.+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~   70 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS   70 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence            55689999999999999999999985 44  56778887644

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.06  E-value=1.2e-06  Score=69.34  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR  112 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~  112 (212)
                      .|+|+|++||||||+++.|+. +|+.++++|.+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~   37 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA   37 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence            589999999999999999985 89999998765444

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.05  E-value=8.4e-07  Score=79.13  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+++++++...+ .+++|+||||||||||+++|+++
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence            345567778888 99999999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.05  E-value=2.8e-06  Score=69.55  Aligned_cols=37  Identities=32%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH----cCCeee--eCCcccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET----LGAGLI--NCDQLGH  111 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~----lg~~vi--~~D~i~~  111 (212)
                      +|.+|.|+|++||||||+++.|+.    +|+.++  +.|.+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~   45 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE   45 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence            478999999999999999999985    688777  7775543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.03  E-value=4.1e-06  Score=73.32  Aligned_cols=41  Identities=32%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .++...++.+|.|+|++||||||+++.|. .+++.+++.|.+
T Consensus       251 ~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~  292 (416)
T 3zvl_A          251 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL  292 (416)
T ss_dssp             SCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence            34456678999999999999999999997 579999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.03  E-value=3.1e-06  Score=70.69  Aligned_cols=27  Identities=26%  Similarity=0.269  Sum_probs=24.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++.+|||+|++||||||+++.|.++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.02  E-value=2.8e-06  Score=71.50  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+|.+++|+|||||||||+++.|+++
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999999975

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.02  E-value=2.5e-06  Score=70.56  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.++|+|+||||||||+++|.++
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999986

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.01  E-value=4.5e-06  Score=69.52  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCCccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L--GAGLINCDQLG  110 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D~i~  110 (212)
                      ..+|.+|.|+|+|||||||+++.|.. +  ++.++++|.+.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R   70 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   70 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence            44688999999999999999999974 5  67888988653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=3.4e-06  Score=71.68  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=25.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+|.+++|+|||||||||+++.|+++
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999999975

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.00  E-value=6.2e-06  Score=67.17  Aligned_cols=45  Identities=22%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGE  130 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~  130 (212)
                      +.+|||+|++||||||+++.|.. +|++++          .++....+.+...||.
T Consensus         1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~----------~~~~~~~~~~~~~~g~   46 (241)
T 1dek_A            1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKY----------QLAGPIKDALAYAWGV   46 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEEC----------CTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCeEE----------ecChHHHHHHHHHccc
Confidence            36899999999999999999997 788763          3445566677777774

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.99  E-value=8.7e-07  Score=74.31  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=23.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+.+++|+|+||||||||+++|.++
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            5789999999999999999999986

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.98  E-value=4.4e-06  Score=66.00  Aligned_cols=27  Identities=22%  Similarity=0.145  Sum_probs=24.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +-+|.+++|+||||||||||++.|.+.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            346889999999999999999999865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.97  E-value=3.7e-06  Score=64.61  Aligned_cols=27  Identities=15%  Similarity=0.048  Sum_probs=23.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++..++|+||+||||||+++.+++.
T Consensus        35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           35 PEEGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             GGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            445889999999999999999999853

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.96  E-value=1.7e-06  Score=75.98  Aligned_cols=34  Identities=24%  Similarity=0.097  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCeE--EEEecCCCCcHHHHHHHHHHc
Q psy17138         66 VQPKPHLSPYPYI--IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        66 ~~~~~~~~~~~~i--igl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++++...+|.+  ++|+|+||||||||+++|.++
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            5667788999999  999999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.95  E-value=4.2e-06  Score=65.78  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -.+|.+|+|+|||||||||+++.|...
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999999999853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.93  E-value=3.3e-06  Score=72.29  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++.+ +...+|.++||+|+||||||||+++|+++
T Consensus        60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            445556 78889999999999999999999999986

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.93  E-value=3.8e-06  Score=71.61  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++++...++.+++|+|+||||||||++.|.++
T Consensus        46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            345566788999999999999999999999975

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.92  E-value=3.5e-06  Score=69.90  Aligned_cols=36  Identities=36%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH--cCCeeeeCCcccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET--LGAGLINCDQLGH  111 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~--lg~~vi~~D~i~~  111 (212)
                      +.+|.|+|++||||||+++.|+.  +|+.+++.|.+..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~   39 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ   39 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHH
Confidence            46899999999999999999986  4888998886543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.92  E-value=5.9e-06  Score=66.79  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY  114 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~  114 (212)
                      -..+||+|++||||||+++.|+ .+|+++++++.+.++..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~   47 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAV   47 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhc
Confidence            4578999999999999999997 48999999766555433

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.91  E-value=9e-06  Score=62.72  Aligned_cols=38  Identities=34%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCcc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQL  109 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~i  109 (212)
                      ...++.+|.|+|++||||||+++.|+..    |.  .+++.|.+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~   52 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA   52 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence            3556899999999999999999999853    32  45566654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.91  E-value=4.1e-06  Score=66.19  Aligned_cols=26  Identities=50%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|.+|.|+|++||||||+++.|++
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            44588999999999999999999985

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.91  E-value=5.1e-06  Score=73.30  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++ +...+|.+++|+||||||||||+++|+++
T Consensus       147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44556 78999999999999999999999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.90  E-value=4.6e-06  Score=71.68  Aligned_cols=27  Identities=26%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++.+++|+|||||||||++++|.++
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            456679999999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.90  E-value=4e-06  Score=64.33  Aligned_cols=30  Identities=20%  Similarity=0.130  Sum_probs=24.2

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++...++ +.+|+|+|||||||++++|..+
T Consensus        20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            33444456 8999999999999999999863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.88  E-value=2.5e-06  Score=70.84  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++++...+|.+++|+|+||||||||++.|+++
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34445566888999999999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.86  E-value=9.8e-06  Score=62.86  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=23.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      +|+|+|++||||||+++.|+. ++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            689999999999999999985 676554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.86  E-value=1.2e-05  Score=68.69  Aligned_cols=33  Identities=24%  Similarity=0.487  Sum_probs=29.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .+|+|+||+||||||+++.|+ .++..++++|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            589999999999999999998 578888999865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.86  E-value=3.6e-06  Score=64.95  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.+++|+|+||||||||++.|.++
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999975

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.86  E-value=7.5e-06  Score=65.02  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      ++|.|+||+||||+|.++.|+ .+|++++++..+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdl   34 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDI   34 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence            367899999999999999997 579999985443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.85  E-value=5.8e-06  Score=71.07  Aligned_cols=31  Identities=26%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++...+|.+++|+|||||||||++++|.++
T Consensus       168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          168 LRRAVQLERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             HHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             HHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4455668999999999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.85  E-value=9.2e-06  Score=63.68  Aligned_cols=25  Identities=32%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+|.+|+|+|++||||||+++.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999984

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.84  E-value=1e-05  Score=69.91  Aligned_cols=27  Identities=30%  Similarity=0.188  Sum_probs=24.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++.+++|+|||||||||+++.|.++
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            567899999999999999999999874

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.83  E-value=3.3e-05  Score=70.34  Aligned_cols=99  Identities=23%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCC-------------CC
Q psy17138         11 GGVKVNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQP-------------KP   70 (212)
Q Consensus        11 ~~~~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~-------------~~   70 (212)
                      +..-+.+...+.|++|+.+....|...       +..+.......+|++.+|....... .++..             .+
T Consensus       312 a~~i~~~~~~~l~i~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~iSgt~ir~~l~~g~-~~p~w~~~~eVsr~lRe~~~  390 (573)
T 1m8p_A          312 AQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPAGVKTLNISGTELRRRLRSGA-HIPEWFSYPEVVKILRESNP  390 (573)
T ss_dssp             HHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCSSSSCTTSCCBCCCHHHHHHHHHHTC-CCCTTTSCHHHHHHHHTTSC
T ss_pred             HHHHHHhhhhhcCceeEeccceEEEcCCCcEEecccCCCCceeecCChHHHHHHHhccC-CCCcccccccccHHHHHhcc
Confidence            344556677788999988888777663       1122344556799998887643211 11111             11


Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHH-cC------CeeeeCCccc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLET-LG------AGLINCDQLG  110 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg------~~vi~~D~i~  110 (212)
                      ....++.+|.|+|.+||||||+++.|+. |+      +.+++.|.+.
T Consensus       391 ~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir  437 (573)
T 1m8p_A          391 PRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR  437 (573)
T ss_dssp             CTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred             cccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence            1345678999999999999999999984 33      3455666543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.83  E-value=1.5e-05  Score=67.61  Aligned_cols=34  Identities=38%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      +.+|.|+||+||||||+++.|+ .++..++++|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            4689999999999999999998 578889998864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.82  E-value=3.6e-06  Score=75.73  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=35.1

Q ss_pred             cCCCCCCCC-CCCCCeEEEEecCCCCcHHHHHHH--HHHc-----CCeeeeCC
Q psy17138         63 RKPVQPKPH-LSPYPYIIGLTGGIASGKSTIAKY--LETL-----GAGLINCD  107 (212)
Q Consensus        63 l~~~~~~~~-~~~~~~iigl~G~~GsGKSTl~~~--L~~l-----g~~vi~~D  107 (212)
                      ...++++++ ..++|.+++|+|+||||||||+++  ++++     |..+++..
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~   77 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   77 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            345667788 888999999999999999999999  5554     44455543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.81  E-value=1.3e-05  Score=62.54  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGA  101 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~  101 (212)
                      ++.+|.|.|++||||||+++.|+. ++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            367999999999999999999985 544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.81  E-value=1.6e-05  Score=69.74  Aligned_cols=26  Identities=35%  Similarity=0.057  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++.+++|+|||||||||+++.|.++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence            56889999999999999999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.81  E-value=1.7e-05  Score=67.65  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .++.+|.|+||+|||||||+..|+ .++..+|++|..
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            345799999999999999999998 578899999865

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.81  E-value=1e-05  Score=65.05  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG  110 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~  110 (212)
                      ++..+..+|+|.|++||||||+++.|+. ||++++|.|.+.
T Consensus         9 ~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~   49 (223)
T 3hdt_A            9 FMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILK   49 (223)
T ss_dssp             ---CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHH
T ss_pred             ccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHH
Confidence            4455578999999999999999999984 899999976543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=66.04  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CCee
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GAGL  103 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~v  103 (212)
                      .+++.+++|  ++|.|||||||||++++|++. +...
T Consensus        38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~   72 (274)
T 2x8a_A           38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNF   72 (274)
T ss_dssp             HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred             HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence            345566777  999999999999999999863 4433

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.79  E-value=1.3e-05  Score=61.50  Aligned_cols=23  Identities=30%  Similarity=0.156  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.+|.|+|++||||||+++.|+.
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999985

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.77  E-value=7.1e-06  Score=77.42  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++++. ..|.+++|+|||||||||++|+++++
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            45566667 78999999999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.74  E-value=2.9e-05  Score=65.34  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=26.6

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...+|.+++|+|++||||||+++.|+++
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence            3445678999999999999999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.74  E-value=7.3e-06  Score=63.94  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...++..++|+|++|||||||++.|.+.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            55778999999999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.74  E-value=1.1e-05  Score=60.72  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=23.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++..++|+|++|||||||++++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999864

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.72  E-value=1.6e-05  Score=62.80  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      ..+|+|.|++||||||+++.|+ .||++++|.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~~   39 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKEL   39 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHHH
Confidence            4589999999999999999998 58999998443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.70  E-value=4e-05  Score=64.84  Aligned_cols=33  Identities=18%  Similarity=0.061  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++...++.+++|+|++||||||++..|+++
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            356777888999999999999999999999863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.69  E-value=2.8e-05  Score=62.52  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=24.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+|.+|.|.|++||||||+++.|++.
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            447899999999999999999999853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.68  E-value=1.9e-05  Score=67.91  Aligned_cols=25  Identities=28%  Similarity=0.216  Sum_probs=23.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +|.+++|+|+||||||||+++|.++
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc
Confidence            4789999999999999999999975

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.67  E-value=1.1e-05  Score=75.65  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++++.   |.+++|+|||||||||++|+++++
T Consensus       569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             CEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence            3344444   899999999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.67  E-value=2.9e-05  Score=62.79  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=24.4

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++..++|  +.|+|||||||||++++|++.
T Consensus        44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           44 MGARIPKG--VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             TTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            45556666  899999999999999999864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.67  E-value=1.8e-05  Score=68.44  Aligned_cols=31  Identities=32%  Similarity=0.222  Sum_probs=27.2

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++..+++.+++|+|||||||||+++.|++.
T Consensus       162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456778999999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.67  E-value=1.9e-05  Score=66.54  Aligned_cols=25  Identities=24%  Similarity=0.216  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +..+++|+|++||||||+++.|.++
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3578999999999999999999965

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.65  E-value=3.6e-05  Score=65.01  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i  109 (212)
                      +.+|.|+||+|||||||+..|+. ++..++++|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            56899999999999999999984 67788888854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.65  E-value=2.3e-05  Score=62.43  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=24.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.+++|+|+|||||||+++.|+.
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            55699999999999999999999987

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.65  E-value=2.7e-05  Score=65.21  Aligned_cols=25  Identities=32%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+.+++|+|+||||||||+++|. +
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~  187 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-G  187 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-S
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-H
Confidence            347899999999999999999999 7

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.64  E-value=4.2e-05  Score=60.47  Aligned_cols=35  Identities=34%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i  109 (212)
                      .+..+.|+||+||||||++..|...|..+++.|.+
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~   67 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGHRLIADDRV   67 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCeEEecchh
Confidence            47889999999999999999999887788877743

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.63  E-value=1.8e-05  Score=71.15  Aligned_cols=30  Identities=20%  Similarity=0.104  Sum_probs=26.1

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++...+|..++|+||+||||||++++|.++
T Consensus       254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          254 WLAIEHKFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             HHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            344567888999999999999999999976

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.63  E-value=5.3e-05  Score=63.83  Aligned_cols=34  Identities=41%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      .+.++.|+||+|||||||+..|+ .++..++++|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            46789999999999999999998 57888888875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.60  E-value=3.8e-05  Score=59.38  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHcCC
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETLGA  101 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~lg~  101 (212)
                      .....++|+|++|||||||++.|.+..+
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999998643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.60  E-value=4.3e-05  Score=62.78  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=24.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+++..++|  +.|+|||||||||++++|++.
T Consensus        67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             HTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence            345556666  899999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.57  E-value=1.9e-05  Score=61.88  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999999985

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.57  E-value=2e-05  Score=76.13  Aligned_cols=133  Identities=13%  Similarity=-0.003  Sum_probs=66.6

Q ss_pred             CCCCCCCCCCCC-------CeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCc----cccccccCCchhHHHHH
Q psy17138         64 KPVQPKPHLSPY-------PYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQ----LGHRAYDVGTRGNQVVR  125 (212)
Q Consensus        64 ~~~~~~~~~~~~-------~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~----i~~~~~~~~~~~~~~~~  125 (212)
                      ..++++++....       |.+++|+|||||||||++|++ ++       |..+.. +.    +...++..-+ . ...+
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq-~~~~l~v~d~I~~rig-~-~d~~  845 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA-EVCRLTPIDRVFTRLG-A-SDRI  845 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES-SEEEECCCSBEEEECC-------
T ss_pred             eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc-CcCCCCHHHHHHHHcC-C-HHHH
Confidence            355666666655       899999999999999999999 64       433321 11    0001110000 0 0000


Q ss_pred             HHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH-HHHHHHHHhhc-CCCcEEEEEeccccccccccccC
Q psy17138        126 ELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL-AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVH  201 (212)
Q Consensus       126 ~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~-~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d  201 (212)
                      .. |..-+  .+...+..++.....+|+  +++++...++|.-. ..++..++.+. .....+++.+|++..+  ..+||
T Consensus       846 ~~-~~stf--~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~--~~~~d  920 (1022)
T 2o8b_B          846 MS-GESTF--FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV--EDYSQ  920 (1022)
T ss_dssp             -----CHH--HHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH--HHTSS
T ss_pred             hh-chhhh--HHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH--HHhCC
Confidence            00 00000  001112223333445555  34556666666653 33556666554 3256777789997654  23566


Q ss_pred             eEEE
Q psy17138        202 EIWV  205 (212)
Q Consensus       202 ~v~~  205 (212)
                      ++++
T Consensus       921 ~~~v  924 (1022)
T 2o8b_B          921 NVAV  924 (1022)
T ss_dssp             CSSE
T ss_pred             ccee
Confidence            5544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.54  E-value=5.2e-05  Score=58.76  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      ...++|+|++|||||||++.|.+..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC
Confidence            4679999999999999999999863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.53  E-value=1.2e-05  Score=67.64  Aligned_cols=28  Identities=14%  Similarity=0.057  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+|.+++|+|+||||||||++.|.++
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            3456899999999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.52  E-value=4e-05  Score=63.03  Aligned_cols=27  Identities=22%  Similarity=0.058  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..++|.+++|+|+||||||||++.|++
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999999985

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.52  E-value=6.2e-06  Score=66.56  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+++|+|||||||||++++|+++
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            57799999999999999999976

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.52  E-value=3.5e-05  Score=66.22  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+++...+| +.+|+|||||||||++++|..
T Consensus        18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            3455566667 999999999999999999986

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.50  E-value=4.6e-05  Score=65.14  Aligned_cols=29  Identities=24%  Similarity=0.247  Sum_probs=26.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...++|.+++|+|+||||||||++.|+++
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45778999999999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.49  E-value=6.5e-05  Score=57.83  Aligned_cols=24  Identities=21%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++.+++|+|++||||||++..|..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.48  E-value=7.2e-05  Score=57.77  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+++|+|++||||||+++.|.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.46  E-value=8.6e-05  Score=55.69  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +.+.+|+|||||||||++.+|.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4588999999999999999997

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.45  E-value=6.6e-05  Score=62.78  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc-----CC--eeeeCCc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL-----GA--GLINCDQ  108 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l-----g~--~vi~~D~  108 (212)
                      .++.+++|+|++||||||++..|++.     |.  .++++|.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            46889999999999999999999842     53  3456664

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.43  E-value=6.9e-05  Score=63.38  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc-CC
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL-GA  101 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l-g~  101 (212)
                      ..++|.|||||||||++++|++. ++
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            56899999999999999999864 44

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.40  E-value=0.00011  Score=62.85  Aligned_cols=26  Identities=35%  Similarity=0.738  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+.+++|+|++|||||||++.|.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999999999863

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.39  E-value=0.00013  Score=60.84  Aligned_cols=31  Identities=26%  Similarity=0.070  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++++.  ++.+++++|++||||||++..|+++
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~  121 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            445555  7999999999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.39  E-value=0.00011  Score=63.96  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=28.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      ..+|+|+||+|||||||+..|+ .++..++++|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4578999999999999999997 56778888775

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.38  E-value=9.8e-05  Score=64.17  Aligned_cols=28  Identities=21%  Similarity=0.176  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...++..+||+|+||||||||+++|.+.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567899999999999999999999983

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.38  E-value=5.5e-05  Score=69.32  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=20.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++|+|+||||||||+++|.|+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSC
T ss_pred             EEEECCCCChHHHHHHHHhCC
Confidence            999999999999999999987

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.37  E-value=0.00021  Score=55.28  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i  109 (212)
                      .|.-+.|+|+||+||||++..|...|+.++.-|.+
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v   49 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDRGHQLVCDDVI   49 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEE
Confidence            36778999999999999999999888887765543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.36  E-value=0.0001  Score=57.49  Aligned_cols=20  Identities=40%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      |.|+||||||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999999964

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.36  E-value=0.0001  Score=64.49  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+.+++|+|||||||||++++|..+
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345789999999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.35  E-value=0.00011  Score=55.74  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=22.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      ++..++|+|++|+|||||++.|.+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.35  E-value=0.00065  Score=57.93  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+..+|+|+|++|+||||++..|..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999974

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=0.00013  Score=58.63  Aligned_cols=29  Identities=34%  Similarity=0.421  Sum_probs=24.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-c-CCee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-L-GAGL  103 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-l-g~~v  103 (212)
                      +|.+|+|.|+.||||||+++.|+. + +..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            478999999999999999999985 4 4433

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.30  E-value=0.00017  Score=66.15  Aligned_cols=32  Identities=31%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-c---CCeeeeC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-L---GAGLINC  106 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-l---g~~vi~~  106 (212)
                      ++.+|.|+|.+||||||+++.|+. |   |..+++.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l   86 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   86 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            588999999999999999999985 4   7766543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.28  E-value=0.00015  Score=54.48  Aligned_cols=24  Identities=42%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...++|+|++|+|||||++.|.+.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.26  E-value=8.6e-05  Score=60.51  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=25.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH-c-CCeee
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET-L-GAGLI  104 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi  104 (212)
                      +..++.+|.|.|++||||||+++.|+. + +..++
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            345789999999999999999999985 4 44444

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=8.4e-05  Score=62.58  Aligned_cols=62  Identities=6%  Similarity=0.028  Sum_probs=41.9

Q ss_pred             ccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeE
Q psy17138        138 SIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEI  203 (212)
Q Consensus       138 ~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v  203 (212)
                      +.+|-.++..+.    .+|.  +++++.+.++|.....+.+.+++... ...+++.+|.. +  +...||++
T Consensus       224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~-~--~~~~~d~~  291 (322)
T 1e69_A          224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK-I--VMEAADLL  291 (322)
T ss_dssp             HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT-T--GGGGCSEE
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH-H--HHhhCceE
Confidence            344555665442    4554  55778888999999999988887743 45667778884 3  34578876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.23  E-value=0.00094  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.+|.|-|+.||||||.++.|+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYH   24 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.23  E-value=0.00013  Score=61.04  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.|+|+|+||||||||++.|.++
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            56799999999999999998864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.22  E-value=0.00015  Score=63.57  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      +.|+|+|+||||||||++.|.++.
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCC
Confidence            456999999999999999999763

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.21  E-value=0.00025  Score=56.42  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|.|.|++||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999999974

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.19  E-value=0.00017  Score=57.39  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .++|.++.|+|+|||||||++..++
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999987765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.19  E-value=0.00026  Score=53.80  Aligned_cols=25  Identities=40%  Similarity=0.391  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...++|+|++|+|||||++.|.+.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.17  E-value=0.00019  Score=60.97  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...++.+++|+|++||||||+++.|.+.
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999999853

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.15  E-value=0.00029  Score=55.41  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +.+..|+|+|||||||++.+|.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            4688999999999999999996

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.14  E-value=0.00072  Score=54.54  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             EEEecCCCCcHHHHHHHHHH-cCCeee--eCCcc
Q psy17138         79 IGLTGGIASGKSTIAKYLET-LGAGLI--NCDQL  109 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~i  109 (212)
                      +.|+||+|+||||+++.|++ ++.+++  ++..+
T Consensus        48 vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~   81 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence            88999999999999999985 454443  44443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.13  E-value=0.00024  Score=59.30  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++.+++|+|++|||||||++.|.+.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45668999999999999999999975

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.12  E-value=0.0002  Score=62.38  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=23.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -..+|.++.|+|+||||||||++.|+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            35679999999999999999999775

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.11  E-value=0.00037  Score=55.90  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|.+|.+.|++||||||+++.|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999999974

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.10  E-value=0.00031  Score=59.51  Aligned_cols=64  Identities=3%  Similarity=-0.022  Sum_probs=46.0

Q ss_pred             hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      .++..+..+|.  +++++.+.++|.....+.+.+.+.......+++-+|.. +  +.+.||+++.+...
T Consensus       264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~--~~~~~d~~~~l~~~  329 (339)
T 3qkt_A          264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E--LKDAADHVIRISLE  329 (339)
T ss_dssp             HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G--GGGGCSEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-H--HHHhCCEEEEEEec
Confidence            44455666766  45778888999999999888877653334666668883 3  45789999988753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.08  E-value=0.00031  Score=56.78  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|.|.|++||||||+++.|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999974

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.07  E-value=0.00055  Score=57.67  Aligned_cols=35  Identities=31%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i  109 (212)
                      .|.-+.|+|+||+||||++..|.+.|+.++.-|.+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~  177 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNV  177 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeE
Confidence            47889999999999999999999988877755543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.06  E-value=0.00055  Score=56.89  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=25.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      ..+..+.|.||+||||||+++.++. ++.+++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i   78 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFI   78 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence            3466789999999999999999985 565554

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.06  E-value=0.00023  Score=54.34  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++|+|++|||||||++.|.+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.06  E-value=0.0006  Score=59.80  Aligned_cols=30  Identities=27%  Similarity=0.056  Sum_probs=25.6

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++++.  ++.+++++|++||||||++..|+.+
T Consensus        92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             CCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44554  7899999999999999999999853

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.03  E-value=8.2e-05  Score=65.16  Aligned_cols=31  Identities=19%  Similarity=0.083  Sum_probs=27.1

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +++....+..++|+|+||||||||++.|.+.
T Consensus       150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4556677889999999999999999999875

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.02  E-value=0.00027  Score=56.82  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=19.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+|.+|.|.|++||||||+++.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999999974

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.00  E-value=0.00052  Score=60.34  Aligned_cols=35  Identities=43%  Similarity=0.598  Sum_probs=27.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQ  108 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~  108 (212)
                      .++.+++++|++||||||++..|+..    |.  .++++|.
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            36899999999999999999999842    43  3456663

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.99  E-value=0.00055  Score=61.26  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCe--eeeCCc
Q psy17138         66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAG--LINCDQ  108 (212)
Q Consensus        66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~--vi~~D~  108 (212)
                      ...+.+..++|  +.|+||+|||||||+++|++ ++.+  .+++..
T Consensus        56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~   99 (499)
T 2dhr_A           56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGSD   99 (499)
T ss_dssp             TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence            34455566666  89999999999999999986 3433  344433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.98  E-value=0.00048  Score=57.13  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=25.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeee
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLI  104 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi  104 (212)
                      ...+..+.|.||+|+|||++++.++ .+|.+++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i   65 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPI   65 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3446678889999999999999998 4566554

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.98  E-value=0.0004  Score=62.73  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=23.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++..+.|+|||||||||++++|+++
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.98  E-value=0.00045  Score=54.93  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|.+.|++||||||.++.|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999999974

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.96  E-value=0.00051  Score=54.79  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=23.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCC
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGA  101 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~  101 (212)
                      +|.+|.+.|++||||||+++.|.. ++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            588999999999999999999985 443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.96  E-value=0.00064  Score=50.95  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+...|+|+|++|||||||++.|.+
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            44577899999999999999999985

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.95  E-value=0.00057  Score=57.08  Aligned_cols=39  Identities=36%  Similarity=0.455  Sum_probs=29.4

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQ  108 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~  108 (212)
                      +++..+ +.+++++|++||||||++..|+..    |.  .++++|.
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            445544 999999999999999999999853    32  3456663

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.94  E-value=0.00081  Score=55.28  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=23.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      +.-+.|.||+|+||||+++.+++ ++.+++
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            55688999999999999999984 565544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.94  E-value=0.00061  Score=50.37  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+++|++|||||||++.|.+-
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            34678999999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.00067  Score=51.74  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.89  E-value=0.00069  Score=50.78  Aligned_cols=26  Identities=12%  Similarity=0.080  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            44678999999999999999999763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.89  E-value=0.00057  Score=54.59  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            34678999999999999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.89  E-value=0.0012  Score=58.15  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=27.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH----cC--CeeeeCCc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET----LG--AGLINCDQ  108 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~----lg--~~vi~~D~  108 (212)
                      ++.+|.++|++||||||++..|+.    .|  ..++++|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999998873    24  34567774

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.88  E-value=0.00072  Score=49.76  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+++|++|||||||++.|.+-
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.87  E-value=0.00073  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +..+.|+|++|+||||+++.+..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999974

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.87  E-value=0.00068  Score=53.32  Aligned_cols=24  Identities=21%  Similarity=0.133  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+..+.|.||+|+||||+++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.87  E-value=0.00061  Score=55.68  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|++|||||||++.|.+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.87  E-value=0.0029  Score=49.43  Aligned_cols=27  Identities=37%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHH----cCCeee
Q psy17138         78 IIGLTGGIASGKSTIAKYLET----LGAGLI  104 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~----lg~~vi  104 (212)
                      +|.|-|+.||||||.++.|+.    .|..++
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~   32 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI   32 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            688999999999999999874    366554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.86  E-value=0.0007  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+++|++|||||||++.|.+-
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.86  E-value=0.00083  Score=50.26  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|||||||++.|.+-
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.86  E-value=0.0009  Score=50.99  Aligned_cols=28  Identities=21%  Similarity=0.193  Sum_probs=24.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .......|+|+|++|+|||||++.|.+.
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3445688999999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.86  E-value=0.00083  Score=49.35  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++++|++|||||||++.|.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.84  E-value=0.00094  Score=49.17  Aligned_cols=24  Identities=17%  Similarity=0.045  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+++|.+|||||||++.|.+-
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.83  E-value=0.0012  Score=53.83  Aligned_cols=30  Identities=37%  Similarity=0.382  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      +.-+.|.||+|+||||+++.++. ++.+++.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            44588999999999999999984 6666543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.83  E-value=0.00064  Score=58.29  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++.|.||+|||||||+..++.
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999999974

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.82  E-value=0.0011  Score=50.43  Aligned_cols=26  Identities=31%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|||||||++.|.+-
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.82  E-value=0.00074  Score=50.34  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|++|+|||||++.|.+.
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            3577999999999999999999853

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.81  E-value=0.0011  Score=52.27  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=26.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cC---Ceeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LG---AGLIN  105 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg---~~vi~  105 (212)
                      ....+|+|+|.+||||+|+++.+.. +|   +.++.
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~   44 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLR   44 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEEC
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEE
Confidence            4578999999999999999999987 75   44454

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.80  E-value=0.0011  Score=49.26  Aligned_cols=25  Identities=28%  Similarity=0.198  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+++|++|||||||++.|.+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3467899999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.79  E-value=0.00088  Score=50.93  Aligned_cols=26  Identities=31%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|+|||||++.|.+-
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45788999999999999999999854

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.79  E-value=0.00096  Score=49.23  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+++|.+|||||||++.|.+-
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.78  E-value=0.00085  Score=49.68  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|+++|++|||||||++.|.+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            56799999999999999999985

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.76  E-value=0.00094  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.115  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|++|||||||++.|.+-
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            467999999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.76  E-value=0.00072  Score=56.90  Aligned_cols=20  Identities=30%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|+||+|+||||+++.|++
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999987

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.75  E-value=0.0018  Score=52.09  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHH-----HcCCeeeeCCc
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLE-----TLGAGLINCDQ  108 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~-----~lg~~vi~~D~  108 (212)
                      ..-.+..++.++|..|+||||++..|+     +....++++|.
T Consensus         9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A            9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            345668899999999999999999998     44455677774

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.75  E-value=0.00094  Score=51.69  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+.|.|++|+||||+++.+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999974

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.75  E-value=0.0009  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+++|++|||||||++.|.+-
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999854

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.74  E-value=0.00092  Score=50.84  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+++|.+|||||||++.|.+-
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3478999999999999999999853

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.73  E-value=0.0011  Score=52.30  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|+|||||++.|.+-
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            356789999999999999999999754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.73  E-value=0.0011  Score=50.24  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|||||||++.|.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.73  E-value=0.0012  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|++|||||||++.|.+
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            3457899999999999999999975

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.73  E-value=0.00076  Score=50.82  Aligned_cols=25  Identities=28%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|++|||||||++.|.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999999873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.72  E-value=0.0011  Score=59.55  Aligned_cols=38  Identities=32%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLG  110 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~  110 (212)
                      ...+.+|.++|.+||||||+++.|+. +   +  ..+++.|.+.
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r   75 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR   75 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence            45678999999999999999999974 3   2  2346666553

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.72  E-value=0.0009  Score=50.35  Aligned_cols=23  Identities=26%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +..+.|+|++|+||||+++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            44578999999999999999974

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.72  E-value=0.0011  Score=50.61  Aligned_cols=26  Identities=27%  Similarity=0.132  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999853

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.71  E-value=0.0011  Score=58.02  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      .....++|+|+||||||||++.|.+..
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            346899999999999999999999763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.70  E-value=0.0011  Score=49.39  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|||||||++.|.+-
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcC
Confidence            345688999999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.69  E-value=0.00089  Score=50.71  Aligned_cols=28  Identities=18%  Similarity=0.051  Sum_probs=22.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+...|+|+|.+|+|||||++.|.+-
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3556789999999999999999999854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.69  E-value=0.0012  Score=50.37  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|+|||||++.|.+-
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            445678999999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.69  E-value=0.0008  Score=61.40  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=24.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....+..+.|+||+||||||+++.|+++
T Consensus        56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           56 AANQKRHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred             cccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            3445678999999999999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.69  E-value=0.0012  Score=51.71  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +...++|+|.+||||||+++.|..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.68  E-value=0.0012  Score=49.98  Aligned_cols=26  Identities=15%  Similarity=0.091  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            44678999999999999999999863

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.68  E-value=0.0017  Score=53.54  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+.|+||+|+||||+++.|+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357899999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.68  E-value=0.00088  Score=56.42  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=19.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.+.||+|+||||+++++++.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.66  E-value=0.0011  Score=49.99  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|++|||||||++.|.+-
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3567999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.66  E-value=0.001  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.188  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|++|||||||++.|.+-
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3567999999999999999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.65  E-value=0.0014  Score=55.87  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|.+|||||||++.|.+.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999974

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.64  E-value=0.0011  Score=54.65  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|.+|||||||++.|.+.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            568999999999999999999974

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.64  E-value=0.0014  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+++|++|||||||++.|.+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.64  E-value=0.0014  Score=49.31  Aligned_cols=25  Identities=16%  Similarity=0.014  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|++|||||||++.|.+-
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4578999999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.64  E-value=0.0014  Score=48.44  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+++|++|||||||++.|.+-
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.64  E-value=0.0009  Score=49.44  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +...|+|+|.+|+|||||++.|.+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            356799999999999999999985

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.64  E-value=0.0011  Score=50.82  Aligned_cols=23  Identities=22%  Similarity=0.185  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|+++|++|+|||||++.|.+
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999999986

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.61  E-value=0.0015  Score=50.87  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|.|+|++|||||||++.|.+.
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34677999999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.60  E-value=0.0015  Score=56.78  Aligned_cols=31  Identities=6%  Similarity=-0.118  Sum_probs=27.0

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...+|..++|+|++|||||||++.|+..
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            4456788999999999999999999999753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.60  E-value=0.0016  Score=52.27  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      .+.-+.|.||+|+||||+++.++. ++.+++
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            345578999999999999999984 555544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.60  E-value=0.0016  Score=50.16  Aligned_cols=28  Identities=36%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+...|+|+|.+|+|||||++.|.+-
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3556789999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.60  E-value=0.0018  Score=48.73  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|||||||++.|.+-
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999854

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.60  E-value=0.0015  Score=54.98  Aligned_cols=34  Identities=26%  Similarity=0.155  Sum_probs=28.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      .|.-+.|+|+||+||||++..|...|+.++.-|.
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~  179 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLINKNHLFVGDDA  179 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCE
Confidence            4777999999999999999999988887765443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.60  E-value=0.0013  Score=48.68  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|+|+|++|+|||||++.|.+
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC
Confidence            35689999999999999999964

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.59  E-value=0.0013  Score=51.16  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+.|.|++|+||||+++.+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999974

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.0016  Score=48.79  Aligned_cols=26  Identities=15%  Similarity=0.222  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|+|||||++.|.+-
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            44678999999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.59  E-value=0.002  Score=57.71  Aligned_cols=36  Identities=28%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH------HcCCeeeeCCc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE------TLGAGLINCDQ  108 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~------~lg~~vi~~D~  108 (212)
                      ..++.+|+|+|++||||||++..|+      +....++++|.
T Consensus        98 ~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W           98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             SS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            3568899999999999999999998      33345567764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.58  E-value=0.0015  Score=48.36  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|+|+|++|||||||++.|.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5689999999999999999974

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.58  E-value=0.0013  Score=49.16  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|++|||||||++.|.+-
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999999853

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.58  E-value=0.0016  Score=48.88  Aligned_cols=26  Identities=15%  Similarity=-0.040  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+++|.+|+|||||++.+.+-
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34678999999999999999999853

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.58  E-value=0.0016  Score=49.19  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            44678999999999999999999853

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.58  E-value=0.0016  Score=51.05  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +...|+|+|.+|||||||++.|..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999974

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.58  E-value=0.0013  Score=49.19  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .....|+|+|++|||||||++.|.+
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4467899999999999999999975

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.57  E-value=0.0015  Score=49.84  Aligned_cols=27  Identities=26%  Similarity=0.199  Sum_probs=23.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|+|||||++.|.+-
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence            455788999999999999999999863

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.56  E-value=0.001  Score=56.73  Aligned_cols=26  Identities=31%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++.|.|++|||||||+..++.
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~   83 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVA   83 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999998873

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.56  E-value=0.0018  Score=49.61  Aligned_cols=26  Identities=15%  Similarity=-0.015  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999854

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.55  E-value=0.0012  Score=55.72  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+..+.|.|++|+||||+++.+.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4466899999999999999999975

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.55  E-value=0.0016  Score=57.65  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..++.+|.++|.+||||||+++.|+.
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999999984

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.55  E-value=0.0013  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|+++|++|+|||||++.|.+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999999974

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.54  E-value=0.0021  Score=49.08  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|||||||++.+.+-
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999887753

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.54  E-value=0.0011  Score=57.48  Aligned_cols=27  Identities=30%  Similarity=0.235  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+..++|+|.+|+|||||++.|.+.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            455778999999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.54  E-value=0.0017  Score=55.20  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      +.-+.|.||+|+||||+++.|+. ++.+++.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~   81 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTM   81 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            44578899999999999999984 5666554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.53  E-value=0.00074  Score=64.52  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138         60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~   93 (212)
                      |.+..-+++++...++..++.|||.||||||+|+
T Consensus         8 gar~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A            8 GARVHNLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             SBCSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             CccccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            3344556778889999999999999999999997

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.53  E-value=0.0018  Score=49.85  Aligned_cols=26  Identities=12%  Similarity=0.116  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            44678999999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.52  E-value=0.0015  Score=50.04  Aligned_cols=26  Identities=12%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ......|+|+|.+|+|||||++.|.+
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhc
Confidence            44567799999999999999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.52  E-value=0.0013  Score=50.82  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ......|+|+|.+|+|||||++.|.+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence            34568899999999999999999964

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.52  E-value=0.0013  Score=54.86  Aligned_cols=27  Identities=22%  Similarity=0.139  Sum_probs=24.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++..-+|+|+|.+|+|||||++.|.+.
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            555788999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.52  E-value=0.0006  Score=64.59  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=28.7

Q ss_pred             ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138         60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~   93 (212)
                      |.+..-+++++...+++.+++|||.||||||||+
T Consensus        20 gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           20 GARQHNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             EECSTTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             eccccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            3344556777888999999999999999999998

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.52  E-value=0.0012  Score=51.29  Aligned_cols=25  Identities=40%  Similarity=0.357  Sum_probs=20.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHcCCee
Q psy17138         79 IGLTGGIASGKSTIAKYLETLGAGL  103 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~lg~~v  103 (212)
                      +-|+|++||||||++..|+..|.++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~~~~~   26 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGDAPQV   26 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred             EEEECCCCCcHHHHHHHHHhcCCCe
Confidence            6799999999999999998435443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.52  E-value=0.0026  Score=48.46  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ......|+|+|.+|+|||||++.|.+-
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            445678999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.51  E-value=0.0017  Score=49.26  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34678999999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0021  Score=48.98  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....|+|+|.+|||||||++.|.+-
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            4678999999999999999999863

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.51  E-value=0.0016  Score=48.79  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            34578999999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.51  E-value=0.0019  Score=48.99  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....|+|+|.+|+|||||++.+.+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhh
Confidence            4578999999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.50  E-value=0.0019  Score=57.41  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      ..++|  +.|+||+|+||||+++.+++ ++.+++
T Consensus        47 ~~p~g--vLL~GppGtGKT~Laraia~~~~~~f~   78 (476)
T 2ce7_A           47 RMPKG--ILLVGPPGTGKTLLARAVAGEANVPFF   78 (476)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence            34445  77999999999999999984 566554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.49  E-value=0.0013  Score=50.05  Aligned_cols=27  Identities=26%  Similarity=0.124  Sum_probs=21.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...+...|+|+|.+|||||||++.|.+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence            345678899999999999999999974

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.49  E-value=0.002  Score=49.02  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            44678999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.49  E-value=0.0021  Score=48.13  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+++|.+|+|||||++.+.+-
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.49  E-value=0.0023  Score=52.01  Aligned_cols=30  Identities=23%  Similarity=0.177  Sum_probs=24.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      .+.-+.|.||+|+||||+++.++. ++.+++
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            356788999999999999999984 566544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0024  Score=56.04  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      .+.=+-|.||+|||||+++++++ .++.+++.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            34447789999999999999998 46777664

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.48  E-value=0.0018  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -+-|.|++|+|||++++.|...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.48  E-value=0.0013  Score=51.07  Aligned_cols=31  Identities=16%  Similarity=0.009  Sum_probs=24.8

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++......|+|+|.+|||||||++.|.+-
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             -CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3344455678999999999999999999863

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.48  E-value=0.0017  Score=54.89  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|+||+|+||||+++.+.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999975

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.48  E-value=0.0017  Score=55.64  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +-+..|+|+|||||||++.+|.
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3688999999999999999997

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0022  Score=49.08  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|+|||||++.|.+-
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0019  Score=49.01  Aligned_cols=25  Identities=20%  Similarity=0.101  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|.+|||||||++.|.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3468899999999999999999985

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.46  E-value=0.0021  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+++|++|||||||++.|.+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4578899999999999999999975

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.46  E-value=0.0021  Score=48.35  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +...|+++|.+|+|||||++.|.+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            356799999999999999999985

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0026  Score=55.95  Aligned_cols=31  Identities=35%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      .+.=+-|.||+|||||+++++++ .+|++++.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34456788999999999999998 46777654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.45  E-value=0.002  Score=47.45  Aligned_cols=21  Identities=38%  Similarity=0.290  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|+++|.+|+|||||++.|.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999975

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.45  E-value=0.002  Score=54.74  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=24.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -.++|.++.|.|++||||||++..++.
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~  144 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCV  144 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999999975

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.44  E-value=0.0018  Score=52.22  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|.+|||||||++.|.+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0026  Score=55.84  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=25.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      +.+.=+-|.||+|||||++++++++ +|.+++.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            3455677899999999999999984 6777654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.44  E-value=0.0014  Score=56.15  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcC
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      +++|+|++|||||||++.|.+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.43  E-value=0.002  Score=49.62  Aligned_cols=26  Identities=15%  Similarity=0.039  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|+|||||++.|.+-
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            45678999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.43  E-value=0.0022  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|||||||++.|.+-
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            34578999999999999999999853

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.42  E-value=0.002  Score=49.19  Aligned_cols=28  Identities=25%  Similarity=0.192  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .......|+|+|.+|+|||||++.|.+-
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3555778999999999999999999753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.42  E-value=0.0023  Score=48.87  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+...|+|+|.+|+|||||++.|.+-
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            445688999999999999999999753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.42  E-value=0.0033  Score=55.19  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH----c-CC--eeeeCCc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET----L-GA--GLINCDQ  108 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~----l-g~--~vi~~D~  108 (212)
                      ...++.+|.++|++||||||++..|+.    . |.  .++++|.
T Consensus        96 ~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A           96 AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             CSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            345688999999999999999988872    2 43  4567774

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.42  E-value=0.0015  Score=54.49  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +..+.|.||+|+||||+++.+..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            44578999999999999999974

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.42  E-value=0.0015  Score=49.33  Aligned_cols=23  Identities=30%  Similarity=0.221  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..|+|+|.+|+|||||++.|.+-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            45899999999999999999864

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.41  E-value=0.0016  Score=55.25  Aligned_cols=26  Identities=27%  Similarity=0.189  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++.+|.|-|+.||||||+++.|+..
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~   30 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASA   30 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999999999853

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.40  E-value=0.0018  Score=49.47  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|++|||||||++.|.+-
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            34678999999999999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.40  E-value=0.0025  Score=48.87  Aligned_cols=26  Identities=31%  Similarity=0.201  Sum_probs=22.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+...|+|+|++|+|||||++.|.+
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHh
Confidence            34578899999999999999999964

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.38  E-value=0.0018  Score=52.75  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|.+|||||||++.|.+.
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC
Confidence            4577999999999999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.37  E-value=0.0016  Score=56.06  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++|+|.+|||||||++.|.+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.37  E-value=0.0026  Score=49.05  Aligned_cols=26  Identities=23%  Similarity=0.073  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44678999999999999999999854

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.37  E-value=0.0017  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.211  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..|+|+|.+|||||||++.|.+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.36  E-value=0.0024  Score=49.06  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....|+|+|++|+|||||++.|.+-
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999853

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.35  E-value=0.00059  Score=61.09  Aligned_cols=31  Identities=26%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+.+....| +.+|+|+|||||||++.+|..+
T Consensus        53 ~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           53 QLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            344455556 8999999999999999999754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.34  E-value=0.0023  Score=49.72  Aligned_cols=26  Identities=19%  Similarity=0.347  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|.+|+|||||++.|.+-
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999999753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.34  E-value=0.0023  Score=49.43  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             CeEEEEecCCCCcHHHHH-HHHH
Q psy17138         76 PYIIGLTGGIASGKSTIA-KYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~-~~L~   97 (212)
                      +.++.++|+.||||||++ +.+.
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999998 4443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.34  E-value=0.0024  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.073  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|.+|+|||||++.|.+-
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999863

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.33  E-value=0.0026  Score=54.26  Aligned_cols=29  Identities=31%  Similarity=0.288  Sum_probs=23.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      .-+.|.||+|+||||+++.|+. ++.+++.
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3478999999999999999984 5655543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.33  E-value=0.0023  Score=49.22  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|++|+||||+++.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999974

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.31  E-value=0.0036  Score=52.36  Aligned_cols=29  Identities=31%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      +.-+.|.||+|+|||++++.++. ++.+++
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~   80 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFF   80 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence            45688999999999999999984 566554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.30  E-value=0.0027  Score=48.41  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|.+|+|||||++.|.+-
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcC
Confidence            34678999999999999999999853

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.30  E-value=0.0026  Score=56.02  Aligned_cols=29  Identities=31%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeeeC
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLINC  106 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~  106 (212)
                      -+.|.||+||||||+++.|+. ++.+++..
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v   81 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence            378999999999999999985 67766543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.30  E-value=0.0023  Score=56.22  Aligned_cols=35  Identities=34%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQ  108 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~  108 (212)
                      .++.+|+++|++||||||++..|+..      -..++++|.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            44679999999999999999999852      245567774

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.30  E-value=0.0009  Score=64.04  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138         60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~   93 (212)
                      |.+..-+++++...++..++.|+|.||||||||+
T Consensus        28 gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           28 GARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             EECSSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccccccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            4455667778889999999999999999999987

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.30  E-value=0.0025  Score=48.62  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|+|||||++.|.+-
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            44678999999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.30  E-value=0.0021  Score=49.39  Aligned_cols=27  Identities=33%  Similarity=0.175  Sum_probs=21.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...+...|.|+|.+|+|||||++.+.+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHh
Confidence            345567899999999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.29  E-value=0.0035  Score=48.31  Aligned_cols=28  Identities=14%  Similarity=0.156  Sum_probs=23.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .......|+|+|.+|||||||++.|.+-
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhC
Confidence            3445678999999999999999999863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0021  Score=48.70  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|++|+|||||++.|.+-
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.29  E-value=0.0025  Score=52.26  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|.+|||||||++.|.+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.28  E-value=0.0028  Score=47.56  Aligned_cols=24  Identities=21%  Similarity=0.193  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +...|+|+|.+|+|||||++.|.+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            356899999999999999999985

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0031  Score=54.83  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      .=+-|.||+|||||+++++++ .++.+++.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            346789999999999999998 46777654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.26  E-value=0.0027  Score=48.94  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999863

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.26  E-value=0.0013  Score=51.41  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|.+|||||||++.|.+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34668999999999999999999754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.25  E-value=0.0032  Score=48.28  Aligned_cols=26  Identities=23%  Similarity=0.126  Sum_probs=21.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+...|+|+|.+|+|||||++.|.+
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            45578899999999999999999974

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.25  E-value=0.0041  Score=52.86  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      .+.-+.|.||+|+||||+++.++. ++.+++
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~  146 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF  146 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            355688999999999999999984 566554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.25  E-value=0.0029  Score=49.29  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|++|+|||||++.|.+-
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            44678999999999999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0026  Score=54.14  Aligned_cols=26  Identities=31%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....++++|++|+|||||++.|.+.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.24  E-value=0.0013  Score=53.16  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             EEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         79 IGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      +.|.||+|+||||+++.|+. ++.+++
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~   73 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFF   73 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            67899999999999999984 454443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.24  E-value=0.0027  Score=58.64  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...++..++|+|++|||||||++.|.+.
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~   32 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYK   32 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence            3567899999999999999999999853

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.23  E-value=0.003  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.-+.|.||+|+||||+++.++.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            55688999999999999998874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.23  E-value=0.0035  Score=48.15  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|+|+|.+|+|||||++.+.+
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            47799999999999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.20  E-value=0.0033  Score=53.92  Aligned_cols=26  Identities=38%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+...+.|+|.+||||||++|.+.-
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHHHH
Confidence            35578899999999999999999963

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.19  E-value=0.003  Score=48.82  Aligned_cols=27  Identities=19%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ......|+|+|.+|+|||||++.|.+-
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhC
Confidence            344678999999999999999999854

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.16  E-value=0.0028  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|.+|||||||++.|.+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            4467899999999999999999974

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.16  E-value=0.0037  Score=53.17  Aligned_cols=29  Identities=31%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      .-+.|.||+|+||||+++.++. ++.+++.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3467889999999999999984 5666543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.15  E-value=0.0029  Score=53.30  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+..+.|.||+|+||||+++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999974

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.13  E-value=0.0039  Score=52.32  Aligned_cols=29  Identities=31%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c-CCeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L-GAGLI  104 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi  104 (212)
                      +.-+.|.||+|+|||++++.++. + +.+++
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            45678899999999999999984 5 55543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0044  Score=54.81  Aligned_cols=32  Identities=28%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      ..+.=+-|.||+|||||+++++++ .++.+++.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            344557789999999999999998 46777654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.11  E-value=0.0037  Score=48.79  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|.+|+|||||++.|.+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            3467899999999999999999974

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.11  E-value=0.0027  Score=53.36  Aligned_cols=27  Identities=19%  Similarity=0.208  Sum_probs=23.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -.++|.++.|.|++||||||++..++.
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~  129 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSV  129 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence            356789999999999999999999974

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.10  E-value=0.0028  Score=48.07  Aligned_cols=25  Identities=20%  Similarity=0.109  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+++|.+|+|||||++.|..
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            3467899999999999999999963

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.10  E-value=0.0041  Score=48.15  Aligned_cols=25  Identities=20%  Similarity=0.082  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+++|.+|+|||||++.+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            4568899999999999999999985

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.09  E-value=0.0036  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +..++|+|.+|+|||||++.|.+-
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.08  E-value=0.0051  Score=54.98  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      +..+.|.||+|+||||+++.++ .+|+.++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4578899999999999999998 46777654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.08  E-value=0.0039  Score=54.85  Aligned_cols=27  Identities=15%  Similarity=0.060  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -..+|.++.|.|++|+|||||+..++.
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~  225 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQ  225 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            466799999999999999999999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.07  E-value=0.0034  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.06  E-value=0.0035  Score=51.32  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=24.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCeee--eCCc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGLI--NCDQ  108 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~  108 (212)
                      .-+.|.||+|+||||+++.++. ++.+++  ++..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~   85 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   85 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence            3467899999999999999984 455443  4443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.06  E-value=0.0034  Score=55.07  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.-+.|.||+|+||||+++.+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999985

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=96.06  E-value=0.0025  Score=54.03  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++.+|.|-|+.||||||+++.|+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~   26 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999985

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.05  E-value=0.0022  Score=48.23  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=11.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .....|+|+|.+|+|||||++.|.+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             SEEEEEEEECCCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999974

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.05  E-value=0.0047  Score=49.39  Aligned_cols=24  Identities=21%  Similarity=0.113  Sum_probs=20.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .+|.++.++|++||||||++-.+.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~   33 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRL   33 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHH
Confidence            458899999999999999877665

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.05  E-value=0.005  Score=51.41  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      .+.|+|++|+||||+++.++. ++.+++
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~~~~~~   84 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEMSANIK   84 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            378999999999999999984 555443

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.05  E-value=0.0035  Score=53.88  Aligned_cols=24  Identities=25%  Similarity=0.058  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...-+.|+|++||||||+++.|..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~   57 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLL   57 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHH
Confidence            345578999999999999999974

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.03  E-value=0.003  Score=54.43  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++.+|.|-|+.||||||+++.|+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae   71 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVA   71 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999985

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.03  E-value=0.0042  Score=48.23  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+...|+|+|.+|+|||||++.|.+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence            44578999999999999999999853

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.03  E-value=0.0037  Score=52.25  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.||+|+||||+++.+++
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999985

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.02  E-value=0.0036  Score=49.82  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .+..+.+.|++||||||++..+.
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHH
Confidence            47789999999999999877664

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.02  E-value=0.0037  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|+|+|.+|+|||||++.|.+
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhC
Confidence            36799999999999999999754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0061  Score=53.43  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      +.+.=+-|.||+|+|||+++++++ .++.+++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            334557889999999999999998 46776654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.98  E-value=0.0029  Score=54.05  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+.|+|+|++|+|||||++.|.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCC
Confidence            355799999999999999998654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.98  E-value=0.0048  Score=46.97  Aligned_cols=25  Identities=16%  Similarity=0.030  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+++|.+|+|||||++.|.+-
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999853

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.95  E-value=0.0069  Score=51.96  Aligned_cols=30  Identities=27%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      +.-+.|.||+|+|||++++.++ .++.+++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            4568899999999999999998 46766653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.95  E-value=0.0045  Score=49.05  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+.+.||+|+||||++..|+..
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            445899999999999999999853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.93  E-value=0.0043  Score=51.86  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++.|.|++||||||++..++.
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999999873

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.92  E-value=0.0068  Score=46.83  Aligned_cols=25  Identities=16%  Similarity=-0.036  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|.+|+|||||++.|.+-
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999853

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.90  E-value=0.0046  Score=52.17  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +..+.|.||+|+||||+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999984

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.89  E-value=0.0046  Score=48.95  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .++|.++.|.|++|+||||++-.++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4568999999999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.89  E-value=0.0062  Score=47.58  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|.|+|.+|+|||||++.|.+-
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            44678999999999999999999863

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.89  E-value=0.0045  Score=51.16  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|.+|||||||++.|.+.
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCC
Confidence            457999999999999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.88  E-value=0.0046  Score=50.14  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +...|+|+|.+|+|||||++.|.+-
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.87  E-value=0.0053  Score=51.91  Aligned_cols=24  Identities=21%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+..+.|.||+|+||||+++.+..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            355899999999999999999974

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0057  Score=47.95  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .....|+|+|.+|+|||||++.|.+.
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            34578999999999999999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.84  E-value=0.0052  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.202  Sum_probs=19.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYL   96 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L   96 (212)
                      .+.++.++|++|||||+++..+
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~   25 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSM   25 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHH
Confidence            3678899999999999998775

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.80  E-value=0.005  Score=50.37  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCC
Confidence            457999999999999999999865

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.79  E-value=0.0061  Score=50.97  Aligned_cols=26  Identities=12%  Similarity=0.037  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|.++.|.|++|+||||++..++.
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            56799999999999999999999873

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.79  E-value=0.0067  Score=47.74  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...+.|+|+|.+|+|||||++.+.+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999984

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.77  E-value=0.0058  Score=49.73  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....|+++|.+|+|||||++.|.+-
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3578999999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.76  E-value=0.0027  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      +-|.|++|+|||++++.+...
T Consensus        30 vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCT
T ss_pred             EEEECCCCccHHHHHHHHHHh
Confidence            778999999999999999754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.70  E-value=0.0012  Score=50.87  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .......|+|+|.+|||||||++.|.+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhc
Confidence            345568899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1jjva_	205	c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus in	8e-25
d1vhta_	208	c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia co	4e-23
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	4e-22
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	2e-17
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	1e-11
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	2e-06
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	5e-04
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	7e-04
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	9e-04
d1osna_	331	c.37.1.1 (A:) Thymidine kinase {Varicella-zoster v	0.001
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.002
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	0.003
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.003

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

 Score = 94.6 bits (234), Expect = 8e-25
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
            YI+GLTGGI SGK+TIA     LG  L++ D +        +     + E FG  I   
Sbjct: 2   TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE 61

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
            G ++R  L   VF++ ++   LN  + P I  ++K+++A   ++    +    +L+  K
Sbjct: 62  QGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENK 119

Query: 196 WQDQVHEIWVTFIPEQE 212
                  I V  +  Q 
Sbjct: 120 LTALCDRILVVDVSPQT 136

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

 Score = 90.3 bits (223), Expect = 4e-23
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
            YI+ LTGGI SGKST+A     LG  +I+ D +  +  + G      + + FG ++   
Sbjct: 3   RYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAA 62

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
           DG++ R+ L   +F+N +E N LN  + PLI  + + +I +   +   ++    +L+   
Sbjct: 63  DGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ--ATSPYVLWVVPLLVENS 120

Query: 196 WQDQVHEIWVTFIPEQE 212
              + + + V  +  + 
Sbjct: 121 LYKKANRVLVVDVSPET 137

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 88.4 bits (218), Expect = 4e-22
 Identities = 15/138 (10%), Positives = 31/138 (22%), Gaps = 8/138 (5%)

Query: 78  IIGLTGGIASGKSTIAKYL-ETLGAGLINC-DQLGHRAYDVGTRGNQVVRELFGE----- 130
           +I L+G   SGK T A ++     A        +                          
Sbjct: 3   LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62

Query: 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVI-EAA 189
            I     +        ++   +     LN       +    +E            I +  
Sbjct: 63  GIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVI 122

Query: 190 VLLSAKWQDQVHEIWVTF 207
             +  +W  +     +  
Sbjct: 123 NNIEDQWSVRRLMQALGT 140

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 75  YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIAL 134
           +P IIG+TG I SGKST+A  L + G  +++ D L  RA +     N+          A+
Sbjct: 2   HPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARE-----NKEEELKRLFPEAV 56

Query: 135 PDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA 194
             G +DR+ L  +VFS+ + +  L   + P +   + EE++RL     ++ +E  +L   
Sbjct: 57  VGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRL--EAPLVFLEIPLLFEK 114

Query: 195 KWQDQVHEIWVTFIP 209
            W+ ++H   +   P
Sbjct: 115 GWEGRLHGTLLVAAP 129

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 59.0 bits (141), Expect = 1e-11
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 2/140 (1%)

Query: 73  SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI 132
           +    ++G+ G   SGK+T+A  L            + H    +  R  +          
Sbjct: 19  TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE 78

Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192
                         +    K                    +         +I+IE   L 
Sbjct: 79  YYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHET--DTHSKRTVYLSDSDMIMIEGVFLQ 136

Query: 193 SAKWQDQVHEIWVTFIPEQE 212
             +W+     +     P + 
Sbjct: 137 RKEWRPFFDFVVYLDCPREI 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 76  PYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQ 108
           P++IG++GG ASGKS++   + + LG   ++  Q
Sbjct: 2   PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 35

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 76 PYIIGLTGGIASGKSTIAKYL 96
          P  I  +G   SGKS  +  +
Sbjct: 27 PLFIFFSGPQGSGKSFTSIQI 47

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG 120
           P+ + + G I SGK+T   + E     +    +   +  +V    
Sbjct: 9   PFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVN 53

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGT----RGNQVVRELFGED 131
           PYII + G +A GKST A+ L+     L++      R   + T      NQV++E     
Sbjct: 80  PYIISIAGSVAVGKSTTARVLQA----LLSRWPEHRRVELITTDGFLHPNQVLKERGLMK 135

Query: 132 IALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVL 191
                 S D  +L   V   K  +  +   ++  ++  V  +  +      ++++E   +
Sbjct: 136 KKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNV 195

Query: 192 LSAK--WQDQVHEIW 204
           L +   +    H ++
Sbjct: 196 LQSGMDYPHDPHHVF 210

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Length = 331

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 6/115 (5%)

Query: 79  IGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD- 136
           I L G    GK+T A+               +G           +               
Sbjct: 8   IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLN 67

Query: 137 GSIDRKKLGAIVFSNK----DEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE 187
           G +  +    +    +         ++  I  L+     + +    E +K+++ +
Sbjct: 68  GDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSD 122

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 67  QPKPHLSPYPYIIGLTGGIASGKSTIAK-YLETLGAGLINCDQLGHRAY 114
           +    LSP P ++   G   +GKST  + +L + G   +N D LG    
Sbjct: 5   ESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQR 53

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 79  IGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
           I L G   +GK T A+++ E  G   I+   +   A   G+   +  +++      + D 
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62

Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVI 184
            +    L     + +D  N      +P  + Q             V+
Sbjct: 63  LVI--ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVL 107

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 22/129 (17%)

Query: 76  PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
             +I L GG ++GKS I + L+           L       G      V  L        
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQ---------SVLPEPWLAFG------VDSLIEAMPLKM 47

Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
             +    +  A    +     +  +  W        E +  ++ +   I+I+   L  A 
Sbjct: 48  QSAEGGIEFDADGGVSIGPEFRALEGAW-------AEGVVAMARAGARIIIDDVFLGGAA 100

Query: 196 WQDQVHEIW 204
            Q++     
Sbjct: 101 AQERWRSFV 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.93
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.67
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.67
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.65
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.63
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.63
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.61
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.6
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.59
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.55
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.49
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.48
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.47
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.46
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.43
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.41
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	99.33
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.3
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.26
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.24
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.08
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.06
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.78
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.7
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.48
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.4
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.37
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.36
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.35
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.33
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.32
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.31
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.31
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.3
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.28
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.27
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.25
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.25
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.24
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.23
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.16
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.12
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.12
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.1
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.09
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.09
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.07
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.96
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.94
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.92
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.84
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.79
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.77
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.77
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.76
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.71
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.48
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.45
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.44
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.38
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.35
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.32
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.32
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.31
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.31
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.29
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.22
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.18
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.18
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.15
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.14
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.1
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.08
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.07
d1okkd2	207	GTPase domain of the signal recognition particle r	97.06
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.05
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.04
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.03
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.01
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.99
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.98
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.98
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.98
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.98
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.95
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.94
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.87
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.85
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.83
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.82
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.79
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.79
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.75
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.74
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.73
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.72
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.7
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.66
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.65
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.61
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.6
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.58
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.56
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.54
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.53
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.5
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.5
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.49
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.48
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.47
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.47
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.46
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.43
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.42
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.39
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.38
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.36
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.35
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.32
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.31
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.31
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.3
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.26
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.23
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.22
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.21
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.2
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.19
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.19
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.17
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.16
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.12
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.11
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.06
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.04
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.99
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.95
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.92
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.92
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.9
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.86
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.85
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.8
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.78
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.68
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.63
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.62
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.56
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.3
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.28
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.19
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.12
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.1
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.08
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.84
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.81
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.8
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.74
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.6
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.3
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.2
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.13
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.1
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.95
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.85
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.83
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.67
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.66
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.64
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.55
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.42
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.22
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.14
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.11
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.94
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.87
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.6
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.42
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.23
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.21
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.2
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.12
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.11
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.92
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.92
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.87
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.78
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.56
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.47
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.41
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.29
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.26
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.22
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.1
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.98
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	90.87
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.86
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.7
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.68
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	90.42
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.19
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.87
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.69
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.65
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.33
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.3
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.32
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.92
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	87.39
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.36
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.3
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.23
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.13
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.27
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.21
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.65
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	81.58
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.56
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.92
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	80.73
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	80.69

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=2.7e-27  Score=187.85  Aligned_cols=134  Identities=28%  Similarity=0.455  Sum_probs=120.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      .++|||||++||||||++++|..+|++++++|.++|++|.++...+..+...||...+..++.++|..|+..+|.++..+
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            37999999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      ..++.++||.+...+...+..  .+..++++|+|+++|.+|...||.+|+|+||++
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~--~~~~~vv~e~~ll~e~~~~~~~d~ii~v~~~~~  135 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENKLTALCDRILVVDVSPQ  135 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--CCSSEEEEECTTTTTTTCGGGCSEEEEEECCHH
T ss_pred             hHhhcccCHHHHHHHHHHHhh--ccCCeEEEEeccccccchhhhhhheeeecchHH
Confidence            999999999999999887765  456799999999999999999999999999975

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.6e-26  Score=182.62  Aligned_cols=134  Identities=27%  Similarity=0.513  Sum_probs=125.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM  155 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~  155 (212)
                      .++|||||++||||||++++|..+|++++++|.++|++|.++...+..+...||..+...++.++|..++..+|.++..+
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            46999999999999999999999999999999999999999988999999999999888889999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+++.++||.+.+.+...+..  ....+++++.|+++|.+|...||.+|+|+||++
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~--~~~~~~~~e~~ll~e~~~~~~~~~iI~V~a~~e  136 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQ--ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPE  136 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHH--hhcCCcceeeeecccccccccCCEEEEEeCCHH
Confidence            999999999999999887765  456789999999999999999999999999975

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.9e-21  Score=151.54  Aligned_cols=130  Identities=30%  Similarity=0.563  Sum_probs=110.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDE  154 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~  154 (212)
                      .|++|||+|++||||||++++|..+|+.++++|.+.+.++.+..   ......++..+  .++.+++..++..+|.++..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g~~~~~~D~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~   76 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKE---EELKRLFPEAV--VGGRLDRRALARLVFSDPER   76 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTTCCEEEHHHHHHHHHHHTH---HHHHHHCGGGE--ETTEECHHHHHHHHTTSHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCeEEEccHHHHHhhhccc---cccccccccee--ccCchhhhhHHHhhhcCchh
Confidence            58999999999999999999999999999999999999887653   33344444443  35678999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~  211 (212)
                      +..++...||.....+......  ....++++|++++++..+...||.+|+|+||++
T Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~vi~e~~~~~~~~~~~~~d~vI~v~a~~e  131 (191)
T d1uf9a_          77 LKALEAVVHPEVRRLLMEELSR--LEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLE  131 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--CCCSEEEEECTTTTTTTCGGGSSEEEEECCCHH
T ss_pred             hhhhhhhhhHHHHHHHHhhhhh--cccceEEEEeeccccccccccceeEEEEecchh
Confidence            9999999999998887665544  456899999999999999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.6e-18  Score=136.43  Aligned_cols=154  Identities=15%  Similarity=0.116  Sum_probs=103.7

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-cc
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-YD  115 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~~  115 (212)
                      ++.+.+++|+    ...+++++++...+|++++|+||||||||||+++|+++     |...++...+..      .+ |.
T Consensus         2 ev~nv~k~yg----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v   77 (232)
T d2awna2           2 QLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV   77 (232)
T ss_dssp             EEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred             EEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeee
Confidence            3566667774    23577889999999999999999999999999999997     333444332210      00 00


Q ss_pred             CC-------------------------c---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        116 VG-------------------------T---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       116 ~~-------------------------~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                      ++                         .   .....+++.++..-+       -+.|+.+|..++..+..+|+  +++++
T Consensus        78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP  157 (232)
T d2awna2          78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP  157 (232)
T ss_dssp             CSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEEST
T ss_pred             ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            00                         0   113344455544321       14578899999999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|....++++.+.++. .....+++.+|.+.++  ..+||+++++.
T Consensus       158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a--~~~~dri~vm~  205 (232)
T d2awna2         158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA--MTLADKIVVLD  205 (232)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            99999999999999998875 4466777779999886  57999999885

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=7.7e-18  Score=135.59  Aligned_cols=158  Identities=16%  Similarity=0.099  Sum_probs=116.6

Q ss_pred             ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc
Q psy17138         44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR  112 (212)
Q Consensus        44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~  112 (212)
                      +...++++.+++|+    ...+++++++...+|+++||+||||||||||+++|.++     |...++.-.+.      +.
T Consensus         4 M~~I~v~nlsk~yg----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~   79 (239)
T d1v43a3           4 MVEVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN   79 (239)
T ss_dssp             CCCEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred             cCeEEEEEEEEEEC----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccce
Confidence            34456778888885    23678889999999999999999999999999999997     33344432221      00


Q ss_pred             c-ccCCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138        113 A-YDVGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E  154 (212)
Q Consensus       113 ~-~~~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~  154 (212)
                      + |.++.                            .....+++.+|..-+       -+.|+.+|..|+..+..+|+  +
T Consensus        80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl  159 (239)
T d1v43a3          80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL  159 (239)
T ss_dssp             EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee
Confidence            0 10000                            123344556665432       14578899999999999999  5


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++.+.++|....++++.+.++. .....+++.+|.+.++  ..+||+++++.
T Consensus       160 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a--~~~~dri~vm~  211 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA--MTMGDRIAVMN  211 (239)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence            689999999999999999998875 4356777779999886  57999999886

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.6e-18  Score=137.71  Aligned_cols=159  Identities=17%  Similarity=0.154  Sum_probs=115.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~  111 (212)
                      ++.+.++.|...+....+++++++...+|+++||+||||||||||+++|+++     |...++.-.+.           +
T Consensus         3 ~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr   82 (240)
T d3dhwc1           3 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR   82 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHH
T ss_pred             EEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhc
Confidence            3566777776554556788999999999999999999999999999999997     33333322210           0


Q ss_pred             cc-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138        112 RA-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+ |       .+..                     ....++++.+|..-..       +.|+.+|..++..+..+|+  
T Consensus        83 ~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lL  162 (240)
T d3dhwc1          83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL  162 (240)
T ss_dssp             HEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEE
T ss_pred             cccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeE
Confidence            00 0       0100                     1233555566643221       3467789999999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI  208 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~  208 (212)
                      +++++.+.++|.....+++.+.++. .....+++-+|.+.++  ..+||+++++.-
T Consensus       163 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~--~~~~dri~vl~~  216 (240)
T d3dhwc1         163 LCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV--KRICDCVAVISN  216 (240)
T ss_dssp             EEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHH--HHHCSEEEEEET
T ss_pred             EeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHH--HHhCCEEEEEEC
Confidence            5588999999999999999998876 3356777779999886  479999998863

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=1.1e-17  Score=134.05  Aligned_cols=157  Identities=14%  Similarity=0.072  Sum_probs=111.8

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------  111 (212)
                      ++.+.++.|........+++++++...+|+++||+||||||||||+++|+++     |...++.-.+..           
T Consensus         3 ~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~   82 (230)
T d1l2ta_           3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR   82 (230)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhc
Confidence            3566677776555566788999999999999999999999999999999987     334444322210           


Q ss_pred             -cc-c-------cCCch------------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcC
Q psy17138        112 -RA-Y-------DVGTR------------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFS  150 (212)
Q Consensus       112 -~~-~-------~~~~~------------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~  150 (212)
                       .+ |       .+...                        .....+..+|..  ..+      +.|+.+|..++..+..
T Consensus        83 ~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~  162 (230)
T d1l2ta_          83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN  162 (230)
T ss_dssp             HHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhc
Confidence             00 1       01100                        112233444432  111      3467789999999999


Q ss_pred             ChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        151 NKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +|.  ++++++..++|.....+.+.+.++. .....+++-+|.+.++   ++||+++++.
T Consensus       163 ~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a---~~~drv~~m~  219 (230)
T d1l2ta_         163 NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA---RFGERIIYLK  219 (230)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH---TTSSEEEEEE
T ss_pred             CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH---HhCCEEEEEE
Confidence            998  5588999999999999999999876 5566777779998654   5899999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.63  E-value=1.4e-17  Score=133.19  Aligned_cols=153  Identities=12%  Similarity=0.096  Sum_probs=111.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-c-
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-Y-  114 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~-  114 (212)
                      ++++.+++|+   .  .+++++++...+|++++|+|||||||||++++|+++     |...+++..+..      .+ | 
T Consensus         3 ~v~nlsk~y~---~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v   77 (229)
T d3d31a2           3 EIESLSRKWK---N--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV   77 (229)
T ss_dssp             EEEEEEEECS---S--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred             EEEEEEEEeC---C--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence            3667777774   2  267889999999999999999999999999999997     334444333211      00 0 


Q ss_pred             ------cCCc------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138        115 ------DVGT------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQA  161 (212)
Q Consensus       115 ------~~~~------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i  161 (212)
                            .+..                  .......+.++..-+.       +.|+.+|..+++.+.++|+  +++++...
T Consensus        78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~  157 (229)
T d3d31a2          78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA  157 (229)
T ss_dssp             CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred             ccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcC
Confidence                  1110                  1233444555543221       2367789999999999999  56889999


Q ss_pred             hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++|....++++.+.++. .....+++-+|.+.++  ..+||+++++.
T Consensus       158 LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~--~~~~drv~vm~  202 (229)
T d3d31a2         158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA--RIMADRIAVVM  202 (229)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHCSEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH--HHhCCEEEEEE
Confidence            99999999999998875 4456777779999886  47899999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=2.4e-17  Score=132.90  Aligned_cols=153  Identities=14%  Similarity=0.160  Sum_probs=110.7

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc--------ccc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR--------AYD  115 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~--------~~~  115 (212)
                      |.+.+++|+.    .++++++++...+|+++||+||||||||||+++|+++     |...++...+.+.        .|.
T Consensus         5 v~nl~k~yg~----~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~v   80 (238)
T d1vpla_           5 VKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL   80 (238)
T ss_dssp             EEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             EEeEEEEECC----EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEe
Confidence            5666777752    3678889999999999999999999999999999987     3333433222110        011


Q ss_pred             CCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138        116 VGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL  158 (212)
Q Consensus       116 ~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~  158 (212)
                      |+.                            ...+...+.++..-.       -+.|+.+|-.++..+.++|.  +++++
T Consensus        81 pq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEP  160 (238)
T d1vpla_          81 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  160 (238)
T ss_dssp             CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             eeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            110                            012333444443221       13467778899999999998  56889


Q ss_pred             HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .+.++|...+.+++.+++.......+++.+|.+.++  ..+||+++++.
T Consensus       161 t~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~--~~~~drv~vl~  207 (238)
T d1vpla_         161 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV--EFLCDRIALIH  207 (238)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH--TTTCSEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            999999999999999988874467888889999886  47999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=1.1e-16  Score=130.17  Aligned_cols=155  Identities=14%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----c-----
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----R-----  112 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----~-----  112 (212)
                      .++.+.+++|+.    .++++++++..++|+++||+||||||||||+++|.++     |...++...+..    +     
T Consensus         5 L~v~nlsk~yg~----~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           5 LRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEEEEEEECC----eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence            346777777752    3678899999999999999999999999999999987     333444332210    0     


Q ss_pred             -cccCCc-------h----------------------------------hHHHHHHHhCCccCC-------CCCccchHh
Q psy17138        113 -AYDVGT-------R----------------------------------GNQVVRELFGEDIAL-------PDGSIDRKK  143 (212)
Q Consensus       113 -~~~~~~-------~----------------------------------~~~~~~~~~g~~~~~-------~~~~~~r~~  143 (212)
                       .|.++.       .                                  ....+++.++.....       +.|+.+|-.
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~  160 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE  160 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHH
Confidence             011100       0                                  111233344433221       235677889


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+.++|+  +++++.+.++|...+++.+.+++++.....+++-+|.+.++  ..+||++++++
T Consensus       161 iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~--~~~~Drv~vm~  224 (254)
T d1g6ha_         161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV--LNYIDHLYVMF  224 (254)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT--GGGCSEEEEEE
T ss_pred             HHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HHhCCEEEEEe
Confidence            9999999998  56889999999999999999988874456777779999885  58999999875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.61  E-value=2.4e-17  Score=132.78  Aligned_cols=155  Identities=17%  Similarity=0.114  Sum_probs=112.4

Q ss_pred             cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138         47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------  110 (212)
Q Consensus        47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------  110 (212)
                      .++.+.+++|+.    ..+++++++..++|+++||+|||||||||++++|+++     |-..++...+.           
T Consensus         4 i~v~nl~k~yg~----~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~   79 (240)
T d1g2912           4 VRLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (240)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             EEEEeEEEEECC----EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence            346777777742    3578889999999999999999999999999999987     33333332210           


Q ss_pred             -ccc-cc-------CCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH
Q psy17138        111 -HRA-YD-------VGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD  153 (212)
Q Consensus       111 -~~~-~~-------~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~  153 (212)
                       +.+ |.       +.-                     ....++++.+|..-+.       +.|+.+|..++..+..+|+
T Consensus        80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~  159 (240)
T d1g2912          80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ  159 (240)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred             cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence             110 11       110                     0133455556544321       3467789999999999999


Q ss_pred             --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                        +++++...++|.....+++.+.++. +....+++-+|.+.++  ..+||+++++.
T Consensus       160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~--~~~~drv~vm~  214 (240)
T d1g2912         160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA--MTMGDRIAVMN  214 (240)
T ss_dssp             EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence              5688999999999999999998875 3356777779999886  57999999876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.60  E-value=1.3e-17  Score=134.67  Aligned_cols=154  Identities=18%  Similarity=0.221  Sum_probs=108.4

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----------  112 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----------  112 (212)
                      .+.+.+++|+    ...+++++++..++|+++||+|||||||||++++|.++     |...+++..+...          
T Consensus         8 ev~~l~k~yg----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           8 EVQSLHVYYG----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             EEeeEEEEEC----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            4677777775    23678889999999999999999999999999999987     3333433222100          


Q ss_pred             cccCC------------------------ch---hHHHHHHHh-CCc-cC------CCCCccchHhHHHHhcCChH--HH
Q psy17138        113 AYDVG------------------------TR---GNQVVRELF-GED-IA------LPDGSIDRKKLGAIVFSNKD--EM  155 (212)
Q Consensus       113 ~~~~~------------------------~~---~~~~~~~~~-g~~-~~------~~~~~~~r~~l~~~vf~~~~--~~  155 (212)
                      .|.+.                        ..   ..+.....+ +.. ..      -+.|+.+|..++..+.++|+  ++
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLll  163 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence            01111                        00   111222222 110 00      13467778899999999999  56


Q ss_pred             HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++.+.++|...+++++.+++++.....+++-+|.+.++  ..+||+++++.
T Consensus       164 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~--~~~~drv~vl~  213 (240)
T d1ji0a_         164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA--LKVAHYGYVLE  213 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence            889999999999999999998873456677779999875  57999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.59  E-value=3.5e-17  Score=131.85  Aligned_cols=156  Identities=8%  Similarity=0.045  Sum_probs=112.6

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~  111 (212)
                      .+.+.+++|...  ...+++++++...+|+++||+|||||||||++++|+++     |-..++...+.           +
T Consensus         5 ~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           5 IVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             EEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            466777777422  34678889999999999999999999999999999997     33333322210           1


Q ss_pred             cc--------ccCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138        112 RA--------YDVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       112 ~~--------~~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .+        +.+.-                     ....++++.+|..-+.       +.|+.+|..+++.+..+|+  
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll  162 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence            10        01110                     1234555666654321       3467789999999999999  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++...++|.....+++.++++. +....+++-+|.+.++  ..+||+++++.
T Consensus       163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~--~~~~dri~vm~  215 (242)
T d1oxxk2         163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI--FAIADRVGVLV  215 (242)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence            5588999999999999999998875 4356777779999886  57999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=2.3e-16  Score=128.52  Aligned_cols=154  Identities=17%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138         48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------  111 (212)
Q Consensus        48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------  111 (212)
                      ++++.+++|+.    ..+++++++...+|+++||+|+||||||||+++|.++     |...+++..+..           
T Consensus         4 ev~nl~k~yg~----~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_           4 HVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             EEEEEEEEECC----EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence            56777777742    3578889999999999999999999999999999987     333444332210           


Q ss_pred             -----------------c-cccCCch----------------------hHHHHHHHhCCcc--C------CCCCccchHh
Q psy17138        112 -----------------R-AYDVGTR----------------------GNQVVRELFGEDI--A------LPDGSIDRKK  143 (212)
Q Consensus       112 -----------------~-~~~~~~~----------------------~~~~~~~~~g~~~--~------~~~~~~~r~~  143 (212)
                                       + .+.+...                      ......+.+|..-  .      -+.|+.+|..
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~  159 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  159 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence                             0 0000000                      1223333334321  0      1346778999


Q ss_pred             HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++..+..+|+  +++++...++|....++.+.++++......+++-+|.+.++  ..+||+++++.
T Consensus       160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~--~~~adri~vm~  223 (258)
T d1b0ua_         160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLH  223 (258)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH--HHHCSEEEEEE
T ss_pred             HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH--HHhCCEEEEEE
Confidence            9999999998  55889999999999999999988873345566669999886  57999999885

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=8.7e-16  Score=123.20  Aligned_cols=141  Identities=20%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcccc---------ccccCC--------------
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGH---------RAYDVG--------------  117 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~---------~~~~~~--------------  117 (212)
                      .+++++++.++|+++||+||||||||||+++|.++    |-..+++..+..         ..|.+.              
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            46678899999999999999999999999999987    333344332210         001000              


Q ss_pred             ---------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcC-------ChH--HHHHHHhhhhHHHHHHHHH
Q psy17138        118 ---------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS-------NKD--EMNKLNQAIWPLILAQVKE  172 (212)
Q Consensus       118 ---------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~-------~~~--~~~~~~~i~~p~~~~~~~~  172 (212)
                               ......+...++..-.       -+.|+.+|..++..+.+       +|+  +++++.+.++|.....+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~  173 (231)
T d1l7vc_          94 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK  173 (231)
T ss_dssp             HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH
T ss_pred             hhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence                     0123344444443221       12356678888888776       334  6688999999999999999


Q ss_pred             HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .++++......+++.+|.+.++  .++||+++++.
T Consensus       174 ~i~~l~~~g~tii~vtHdl~~~--~~~~dri~vl~  206 (231)
T d1l7vc_         174 ILSALCQQGLAIVMSSHDLNHT--LRHAHRAWLLK  206 (231)
T ss_dssp             HHHHHHHTTCEEEECCCCHHHH--HHHCSBCCBEE
T ss_pred             HHHHHHhCCCEEEEEeCCHHHH--HHHCCEEEEEE
Confidence            9988874456788889999875  58999998874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=4.4e-16  Score=126.51  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=104.5

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~  112 (212)
                      .-.+++++++|..  .....++++++..++|+++||+|+||||||||+++|.++     |...++.-.+..        .
T Consensus        13 ~I~~~nvsf~Y~~--~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   90 (253)
T d3b60a1          13 DLEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ   90 (253)
T ss_dssp             CEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             EEEEEEEEEEeCC--CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence            3567777777742  233467889999999999999999999999999999987     333333222100        0


Q ss_pred             -cccCC-------------------c---hhHH---------HHHHHhCC--cc-C------CCCCccchHhHHHHhcCC
Q psy17138        113 -AYDVG-------------------T---RGNQ---------VVRELFGE--DI-A------LPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       113 -~~~~~-------------------~---~~~~---------~~~~~~g~--~~-~------~~~~~~~r~~l~~~vf~~  151 (212)
                       .|.+.                   .   ....         ..+..+..  +. .      -+.|+.+|-.|++.+..+
T Consensus        91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~  170 (253)
T d3b60a1          91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  170 (253)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence             01000                   0   0011         11222111  10 0      134567899999999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |.  +++++.+.+++.....+.+.+.++.. .+++++-+|.+...   .+||+|++++
T Consensus       171 p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~---~~~D~v~vl~  224 (253)
T d3b60a1         171 SPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTI---EQADEIVVVE  224 (253)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGT---TTCSEEEEEE
T ss_pred             CCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHH---HhCCEEEEEE
Confidence            98  55889999999999999999988754 45666668998543   5799999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-16  Score=126.73  Aligned_cols=158  Identities=16%  Similarity=0.111  Sum_probs=105.7

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------  110 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------  110 (212)
                      ...+.+++++|... .....++++++...+|++++|+|+||||||||+++|.++     |...++.-.+.          
T Consensus        11 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CEEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             eEEEEEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence            35677777777532 123456789999999999999999999999999999987     33344432221          


Q ss_pred             -----cccccCCc----------------hhHH---------HHHHHh--CCcc-C------CCCCccchHhHHHHhcCC
Q psy17138        111 -----HRAYDVGT----------------RGNQ---------VVRELF--GEDI-A------LPDGSIDRKKLGAIVFSN  151 (212)
Q Consensus       111 -----~~~~~~~~----------------~~~~---------~~~~~~--g~~~-~------~~~~~~~r~~l~~~vf~~  151 (212)
                           .+.+....                ....         ..+..+  |.+. .      -+.|+.+|-.|++.+.++
T Consensus        90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~  169 (251)
T d1jj7a_          90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK  169 (251)
T ss_dssp             EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence                 00000000                0000         111111  1110 0      134677899999999999


Q ss_pred             hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      |+  +++++.+.+++.....+.+.+.++. ...+++++-+|.+...   ..||++++++
T Consensus       170 p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~---~~aDrI~vl~  225 (251)
T d1jj7a_         170 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV---EQADHILFLE  225 (251)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH---HTCSEEEEEE
T ss_pred             CcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            98  5688899999999999999998765 3356777779998543   5699999885

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7e-16  Score=124.41  Aligned_cols=153  Identities=18%  Similarity=0.204  Sum_probs=101.1

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cc
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AY  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~  114 (212)
                      +.+++++|...  .-..++++++..++|.++||+|+||||||||+++|.++     |...+++-.+..        . .|
T Consensus         4 ~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           4 FRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEEEEEeCCC--CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            45555666322  11245778899999999999999999999999999987     333444322210        0 01


Q ss_pred             cCC------c---------------hhHHHHHHHhCC---------c---c------CCCCCccchHhHHHHhcCChH--
Q psy17138        115 DVG------T---------------RGNQVVRELFGE---------D---I------ALPDGSIDRKKLGAIVFSNKD--  153 (212)
Q Consensus       115 ~~~------~---------------~~~~~~~~~~g~---------~---~------~~~~~~~~r~~l~~~vf~~~~--  153 (212)
                      .++      .               .......+..+.         .   .      .-+.|+.+|-.|++.+..+|+  
T Consensus        82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~il  161 (241)
T d2pmka1          82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL  161 (241)
T ss_dssp             ECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchh
Confidence            111      0               011111111111         0   0      013457789999999999998  


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      +++++.+.++|...+.+.+.+.++.. .+++++-+|.+...   ..||++++++
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~---~~~D~i~vl~  211 (241)
T d2pmka1         162 IFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTV---KNADRIIVME  211 (241)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGG---TTSSEEEEEE
T ss_pred             hhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHH---HhCCEEEEEE
Confidence            56788899999999999999988754 45777779988543   5799999986

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.46  E-value=1.5e-14  Score=116.03  Aligned_cols=136  Identities=17%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------c-cccC-------Cc-----------
Q psy17138         69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------R-AYDV-------GT-----------  118 (212)
Q Consensus        69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~-~~~~-------~~-----------  118 (212)
                      +++... +++++|+|||||||||++++|+++     |...+++..+.+      . -|.+       .-           
T Consensus        18 vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~   96 (240)
T d2onka1          18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR   96 (240)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred             EEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhc
Confidence            555564 478999999999999999999997     333343322210      0 0111       10           


Q ss_pred             --------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CC
Q psy17138        119 --------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ES  180 (212)
Q Consensus       119 --------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~  180 (212)
                              ....++++.+|..-+.       +.|+.+|..++..+.++|+  +++++...++|.....+++.++++. ..
T Consensus        97 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~  176 (240)
T d2onka1          97 NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF  176 (240)
T ss_dssp             TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence                    1234445556554321       2367789999999999999  5588999999999999999998875 33


Q ss_pred             CcEEEEEeccccccccccccCeEEEEE
Q psy17138        181 HKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       181 ~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ...+++-+|.+.++  ..+||++++++
T Consensus       177 g~tvi~vtHd~~~~--~~~adri~vm~  201 (240)
T d2onka1         177 DVPILHVTHDLIEA--AMLADEVAVML  201 (240)
T ss_dssp             TCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred             CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence            45666679999886  57999999985

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.43  E-value=1.8e-15  Score=122.95  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c
Q psy17138         46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R  112 (212)
Q Consensus        46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~  112 (212)
                      ...+++++++|...  ....++++++...+|.+++|+|+||||||||+++|.++     |...++.-.+..        .
T Consensus        16 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~   93 (255)
T d2hyda1          16 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ   93 (255)
T ss_dssp             CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred             EEEEEEEEEEeCCC--CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence            35677777777432  22456788999999999999999999999999999987     333333222210        0


Q ss_pred             -cccCC---------------------chhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCCh
Q psy17138        113 -AYDVG---------------------TRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNK  152 (212)
Q Consensus       113 -~~~~~---------------------~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~  152 (212)
                       .|.++                     .......++..+.           +. .      -+.|+.+|-.|++.+.++|
T Consensus        94 i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p  173 (255)
T d2hyda1          94 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP  173 (255)
T ss_dssp             EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred             eeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence             01000                     0011111221111           00 0      1335677889999999999


Q ss_pred             H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      .  +++++.+.++|.....+.+.+.++.. .+++++-+|.+...   ..||++++++
T Consensus       174 ~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~---~~~D~ii~l~  226 (255)
T d2hyda1         174 PILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTI---THADKIVVIE  226 (255)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGT---TTCSEEEEEE
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH---HhCCEEEEEE
Confidence            8  56788999999999999999987754 45666669988543   5799999985

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.41  E-value=1.1e-15  Score=123.40  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------ccc-c
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRA-Y  114 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~-~  114 (212)
                      +.+++++|...   -..++++++..++|+++||+||||||||||+++|.++     |-..++...+.        +.+ |
T Consensus         4 ~knvsf~Y~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           4 ARHVDFAYDDS---EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             EEEEEECSSSS---SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEECCCC---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            45556666321   1356788999999999999999999999999999987     44444432221        000 1


Q ss_pred             cCC------c----------------hhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH-
Q psy17138        115 DVG------T----------------RGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD-  153 (212)
Q Consensus       115 ~~~------~----------------~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~-  153 (212)
                      .++      .                .......+..+....                  -+.|+.+|-.+++.+..+|+ 
T Consensus        81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i  160 (242)
T d1mv5a_          81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (242)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            111      0                011112222121100                  13456778899999999998 


Q ss_pred             -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138        154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                       +++++.+.+++.....+.+.++++.. .+++++-+|.+...   ..||++++++
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~---~~~D~i~vl~  211 (242)
T d1mv5a_         161 LMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTI---VDADKIYFIE  211 (242)
T ss_dssp             EEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHHH---HHCSEEEEEE
T ss_pred             EEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH---HhCCEEEEEE
Confidence             55788888999988888888887754 56777779998653   4699999986

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.33  E-value=1.8e-15  Score=121.11  Aligned_cols=134  Identities=13%  Similarity=-0.040  Sum_probs=87.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeee-CCccccccccCCchhHHHHHHHhCC-----ccCCCCCccchHhHHHHh
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN-CDQLGHRAYDVGTRGNQVVRELFGE-----DIALPDGSIDRKKLGAIV  148 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~-~D~i~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~r~~l~~~v  148 (212)
                      |.+|||+|+.||||||++++|. .+|+.+++ +|.+.+.++.++...+......|+.     ......+.+++..++..+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLEVI   80 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHHHHHHHHSTTSSSCCCCHHHHTTTTSCTTSCCCCCHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHHHhcCchhHHHHHHhhcceeecccCccchHHHhHHHHHHHH
Confidence            5799999999999999999996 58999999 7888888765442211111111222     222245567788899999


Q ss_pred             cCChHHHHHHHhhhhHHHHHHHHHHHHhh----------------cCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138        149 FSNKDEMNKLNQAIWPLILAQVKEEIARL----------------SESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP  209 (212)
Q Consensus       149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~----------------~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~  209 (212)
                      |.++..+.+++.++||.+...+...+...                ........+..++++|.++..+||.+|++.++
T Consensus        81 ~~~~~~~~~l~~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~g~e~~~~~~~~~~~~~~~~  157 (241)
T d1deka_          81 TIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFA  157 (241)
T ss_dssp             HHHHHHHHHHHTTSCCTTCCEEESSSCEEECHHHHHHHHHHHHTCCSCCCHHHHHHHHHTTTHHHHTCTTHHHHHHH
T ss_pred             hCCHHHHHHHHhccCHHHHHHHHHHHHhhhccCceEEeehhhhhcccccccceeeeeeeeeechhhcCCcEEEEeCc
Confidence            99999999999999987643222111100                01111122334566677666778887776554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.6e-14  Score=118.80  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---cc----------ccccCC----chhHH
Q psy17138         65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GH----------RAYDVG----TRGNQ  122 (212)
Q Consensus        65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~----------~~~~~~----~~~~~  122 (212)
                      .++++++...+|+++||+||||||||||+++|.++     |...+++ .+   .+          +....+    ...+.
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  129 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYK  129 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-CEEEECSSCCCCSEEHHHHHTTTSCCCHHHHH
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-EEEEEeccccccCceeeccccccccccchHHH
Confidence            56778999999999999999999999999999986     2222221 11   01          111000    01122


Q ss_pred             HHHHHhC---------Ccc---C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCc
Q psy17138        123 VVRELFG---------EDI---A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHK  182 (212)
Q Consensus       123 ~~~~~~g---------~~~---~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~  182 (212)
                      ...+...         ...   .      -+.|+.+|-.|++.+.++|+  +++++.+.++|.....+.+.+.......+
T Consensus       130 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~  209 (281)
T d1r0wa_         130 SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK  209 (281)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTS
T ss_pred             HHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence            2222111         100   0      13467789999999999998  56788889999888887665322223456


Q ss_pred             EEEEEeccccccccccccCeEEEEE
Q psy17138        183 VIVIEAAVLLSAKWQDQVHEIWVTF  207 (212)
Q Consensus       183 ~vvie~~~l~e~~~~~~~d~v~~v~  207 (212)
                      ++++-+|.+..   ...||++++++
T Consensus       210 tvi~itH~~~~---l~~aDrI~vl~  231 (281)
T d1r0wa_         210 TRILVTSKMEH---LRKADKILILH  231 (281)
T ss_dssp             EEEEECSCHHH---HHTCSEEEEEE
T ss_pred             EEEEEechHHH---HHhCCEEEEEE
Confidence            77777898743   35799999885

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-13  Score=107.18  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=26.9

Q ss_pred             CCCcEEEEEecccc-ccccccccCeEEEEEeCCC
Q psy17138        179 ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQ  211 (212)
Q Consensus       179 ~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~  211 (212)
                      .+..++++++.+++ +.++.++||.+|+|++|++
T Consensus       109 ~~~~~iiveg~~~l~~~~l~~~~D~~i~v~~~~~  142 (213)
T d1uj2a_         109 YPADVVLFEGILAFYSQEVRDLFQMKLFVDTDAD  142 (213)
T ss_dssp             CCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHH
T ss_pred             cccceEEecchhhhccHHHHhhhheeeeecCCHH
Confidence            45668888888765 6778899999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.24  E-value=1.9e-13  Score=107.06  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---c-cccCC--
Q psy17138         49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---R-AYDVG--  117 (212)
Q Consensus        49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---~-~~~~~--  117 (212)
                      +.+.++.|.   .  ..++++++..++|.++||+||||||||||+++|+++     |...++.-.+.+   . .|.+.  
T Consensus         5 v~~ls~~y~---~--~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~   79 (200)
T d1sgwa_           5 IRDLSVGYD---K--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEESS---S--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             EEEEEEEeC---C--eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence            455555552   1  356788999999999999999999999999999986     333343322110   0 01111  


Q ss_pred             ----c--------------------hhHHHHHHHhCCccC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138        118 ----T--------------------RGNQVVRELFGEDIA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL  165 (212)
Q Consensus       118 ----~--------------------~~~~~~~~~~g~~~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~  165 (212)
                          .                    .......+.++..-+      -+.|+.+|..++..+.++|+  +++++.+.++|.
T Consensus        80 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~  159 (200)
T d1sgwa_          80 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED  159 (200)
T ss_dssp             CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred             cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence                0                    011122223322111      12356678889999999998  568899999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138        166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT  206 (212)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v  206 (212)
                      ..+.+.+.+.+......++++..+-  +   ..+||.+..+
T Consensus       160 ~~~~i~~~l~~~~~~~~~~ii~~~~--~---l~~~D~~~~l  195 (200)
T d1sgwa_         160 SKHKVLKSILEILKEKGIVIISSRE--E---LSYCDVNENL  195 (200)
T ss_dssp             THHHHHHHHHHHHHHHSEEEEEESS--C---CTTSSEEEEG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEec--h---hhhcchhhhe
Confidence            9988888877664222344444442  1   1478987653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.08  E-value=2.8e-13  Score=103.84  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138        179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE  212 (212)
Q Consensus       179 ~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~  212 (212)
                      ....++++++.+++...+.+++|.+|++++|.++
T Consensus       123 ~~~~ivi~e~~~~~~~~~~~~~d~~i~l~~~~e~  156 (198)
T d1rz3a_         123 SDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREI  156 (198)
T ss_dssp             TTCSEEEEEETTTTSTTTGGGCSEEEEECCC---
T ss_pred             ccccccccccchhccccccccceeeeeccCcHHH
Confidence            4567999999999988899999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.6e-11  Score=101.80  Aligned_cols=126  Identities=25%  Similarity=0.286  Sum_probs=73.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc------C--CeeeeCCccccccccCCchhHHHHHHHhCC-ccCCCCCccchHh
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL------G--AGLINCDQLGHRAYDVGTRGNQVVRELFGE-DIALPDGSIDRKK  143 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l------g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~r~~  143 (212)
                      ...|++|||.|++||||||+++.|..+      +  ..+++.|..    |.+.    +.. ..-+. .-....+.+|...
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F----~~~~----~~l-~~~~~~~~~g~Pes~D~~~  147 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF----LHPN----QVL-KERGLMKKKGFPESYDMHR  147 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG----BCCH----HHH-HHHTCTTCTTSGGGBCHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee----ECCc----hHH-HHhcCCccCCchHhhhHHH
Confidence            567999999999999999999999863      1  234666643    2222    111 12221 1111123456555


Q ss_pred             HHHHhcCChHHHH-HHHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccccc-----------cccccCeEEEEEe
Q psy17138        144 LGAIVFSNKDEMN-KLNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLSAK-----------WQDQVHEIWVTFI  208 (212)
Q Consensus       144 l~~~vf~~~~~~~-~~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e~~-----------~~~~~d~v~~v~~  208 (212)
                      +...+.    .+. .-..+..|.+.+...+.+....   ....++++||.+++...           +.+++|..|+|+|
T Consensus       148 L~~~L~----~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda  223 (308)
T d1sq5a_         148 LVKFVS----DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA  223 (308)
T ss_dssp             HHHHHH----HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEEC
T ss_pred             HHHHHH----HHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecC
Confidence            543321    111 0112344555554444332211   44579999999987532           6789999999999


Q ss_pred             CCC
Q psy17138        209 PEQ  211 (212)
Q Consensus       209 ~~~  211 (212)
                      |++
T Consensus       224 ~~~  226 (308)
T d1sq5a_         224 PED  226 (308)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            964

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.78  E-value=1.6e-08  Score=75.27  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=27.0

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      |.|+|++||||||+++.|+ .||++++|.|.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~   33 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDF   33 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCc
Confidence            7889999999999999996 68999999774

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.70  E-value=3.3e-09  Score=86.65  Aligned_cols=129  Identities=15%  Similarity=0.070  Sum_probs=61.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc----C--CeeeeCCccccccccCCchhHH-HH--HHHhCCccCCCC--CccchHh
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL----G--AGLINCDQLGHRAYDVGTRGNQ-VV--RELFGEDIALPD--GSIDRKK  143 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l----g--~~vi~~D~i~~~~~~~~~~~~~-~~--~~~~g~~~~~~~--~~~~r~~  143 (212)
                      +..+|||+|+|||||||+++.|...    +  +.++++|..-    ........ ..  ....+...++.+  ...+...
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy----r~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dl   78 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH----RFNRADMKAELDRRYAAGDATFSHFSYEANELKE   78 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB----SCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC----ccchhhhhhhhhhhhhhhccCCCCCCcccccHHH
Confidence            3458999999999999999988742    3  3467777531    11111000 00  111111111111  1222222


Q ss_pred             HHHHhcCChHHHHHHHhhhhHHHHHHHHHHHHhh------------cCCCcEEEEEecccc----ccccccccCeEEEEE
Q psy17138        144 LGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL------------SESHKVIVIEAAVLL----SAKWQDQVHEIWVTF  207 (212)
Q Consensus       144 l~~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~------------~~~~~~vvie~~~l~----e~~~~~~~d~v~~v~  207 (212)
                      +...+    ..+..-..+-.|.+.+...+.....            ..+.+++++||-..+    +..+++++|..++|+
T Consensus        79 L~~~l----~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~ir~~~DlkIfVd  154 (288)
T d1a7ja_          79 LERVF----REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVV  154 (288)
T ss_dssp             HHHHH----HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEE
T ss_pred             HHHHH----HHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhhHhhcCeEEEEE
Confidence            22111    1122222233344444333322100            033579999999776    345789999999999


Q ss_pred             eCCC
Q psy17138        208 IPEQ  211 (212)
Q Consensus       208 ~~~~  211 (212)
                      ++.+
T Consensus       155 ~d~d  158 (288)
T d1a7ja_         155 PVIN  158 (288)
T ss_dssp             ECHH
T ss_pred             CCCC
Confidence            9864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.48  E-value=4.4e-08  Score=74.59  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      ..+|.+|.|+||+||||||+++.|+ .+|+.+++++.+.+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r   42 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLR   42 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHH
Confidence            4568999999999999999999997 57999998765433

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.7e-08  Score=71.71  Aligned_cols=33  Identities=36%  Similarity=0.402  Sum_probs=28.7

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      .|.|+|++||||||+++.|+ .||+++++.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~   37 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI   37 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhH
Confidence            47889999999999999997 5899999877653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.47  E-value=2.3e-08  Score=73.99  Aligned_cols=33  Identities=39%  Similarity=0.434  Sum_probs=28.1

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      .|.|+|++||||||+++.|+ .+|+++++.|.+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~   39 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLA   39 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEechHHH
Confidence            36699999999999999997 5899999876553

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=8.2e-08  Score=70.99  Aligned_cols=37  Identities=32%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      ..+.++.|+|++||||||+++.|+ .+|+.+++.|.+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~   41 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH   41 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhh
Confidence            468899999999999999999998 5789998888654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.42  E-value=4.5e-08  Score=73.25  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      |.|+|++||||||+++.|+ .||++++|+|.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~   36 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIF   36 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhh
Confidence            5689999999999999997 689999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.40  E-value=8e-08  Score=71.20  Aligned_cols=31  Identities=39%  Similarity=0.384  Sum_probs=26.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      .|.+|.|+|++||||||+++.|++ +|.++++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~   34 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVH   34 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            488999999999999999999985 5766653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.40  E-value=4.5e-08  Score=74.35  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      .|..|.|.||+||||||+++.|+ .+|+.+++++.+-+
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~   39 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLR   39 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHH
Confidence            36678899999999999999997 68999988765443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.37  E-value=1.4e-07  Score=69.78  Aligned_cols=26  Identities=38%  Similarity=0.491  Sum_probs=23.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|++|.|+|++||||||+++.|+.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999999984

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.37  E-value=9.5e-08  Score=72.48  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      +|..|.|+||+||||||+++.|+ .+|+.+++.+.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdl   37 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM   37 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence            46667799999999999999998 589999986543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.3e-07  Score=72.00  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ  108 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~  108 (212)
                      .+++-.+|.|+||+||||||+++.|+ .+|+.+++++.
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gd   41 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD   41 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhH
Confidence            45567889999999999999999998 58999998643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.5e-08  Score=72.58  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      |.+|.|+||+||||||+++.|+ .+|+.+++++.+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~l   35 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL   35 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHH
Confidence            6789999999999999999997 689999886543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.33  E-value=1.8e-07  Score=71.39  Aligned_cols=39  Identities=18%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      +.++..|.|+||+||||||+++.|+ .+|+.+++++.+-+
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr   42 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLR   42 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHH
Confidence            4567888899999999999999997 58999998765433

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.32  E-value=1.8e-07  Score=69.01  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=25.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      ..+|.|+|++||||||+++.|+. ++..+++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~   33 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence            56899999999999999999985 6655543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.31  E-value=2.3e-07  Score=68.72  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D  107 (212)
                      ...|+|+|++||||||+++.|+ .+|.+++..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            5789999999999999999998 5788887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=2e-07  Score=70.17  Aligned_cols=41  Identities=34%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      +...+++.+|.++|++||||||+++.+. .+++.+++.|.+.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            3445678999999999999999999996 5788999888653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=1.5e-07  Score=70.00  Aligned_cols=31  Identities=45%  Similarity=0.587  Sum_probs=27.2

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      |.|+|++||||||+++.|+ .||.+++|.|..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~   35 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA   35 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccc
Confidence            5577999999999999997 589999998864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.28  E-value=3.1e-07  Score=67.81  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=27.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cC-CeeeeCC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LG-AGLINCD  107 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg-~~vi~~D  107 (212)
                      .+++..|.|+|++||||||+++.|+. ++ +.+++.+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~   38 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG   38 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHH
Confidence            35688899999999999999999974 54 4554443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.27  E-value=2.2e-07  Score=70.71  Aligned_cols=36  Identities=28%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      ++.+|.|+||+||||||+++.|+ .+|+.+++++.+-
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~ll   43 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLL   43 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHH
Confidence            57889999999999999999997 5899999876553

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.25  E-value=1.6e-07  Score=72.56  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      ..+|+|.||+||||||+++.|+ .+|++++++..+-+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R   39 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYR   39 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHH
Confidence            4578999999999999999998 68999998655433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.25  E-value=2.1e-07  Score=70.09  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      .|.|+||+||||||+++.|+ .+|+.+++++.+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdll   35 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMF   35 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHH
Confidence            57799999999999999998 5799999875543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=2.2e-07  Score=69.06  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+||||||||||++.|+++
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhc
Confidence            4899999999999999999974

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.24  E-value=1.7e-07  Score=68.06  Aligned_cols=33  Identities=39%  Similarity=0.254  Sum_probs=26.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-H-cCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-T-LGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~-lg~~vi~~D~i  109 (212)
                      .+|.|+|++||||||+++.|. . .++.+++.|.+
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~   37 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY   37 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHH
Confidence            578899999999999999885 3 46677776644

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.23  E-value=2.4e-07  Score=69.27  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=28.4

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG  110 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~  110 (212)
                      .|.|+||+||||||+++.|+ .+|+.+++.+.+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll   35 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMF   35 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHHH
Confidence            47799999999999999997 5899999876543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.2e-07  Score=69.01  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|.|+|++||||||+++.|+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=4.1e-07  Score=69.85  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=28.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .+|+|.||+||||||+++.|+ .+|++++++..+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            389999999999999999998 689999985444

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.12  E-value=1.1e-06  Score=64.36  Aligned_cols=32  Identities=34%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH-cCCee-eeCCc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET-LGAGL-INCDQ  108 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~-lg~~v-i~~D~  108 (212)
                      .+|.|+|++||||||+++.|+. ++..+ ++.|.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~   36 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI   36 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHH
Confidence            5799999999999999999984 55543 34443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=8.1e-07  Score=66.71  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=28.2

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH  111 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~  111 (212)
                      .|.|+||+||||||+++.|+ .+|..+++++.+-+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~   38 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR   38 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEeccccce
Confidence            35688999999999999998 57999998765433

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=6.3e-07  Score=67.21  Aligned_cols=32  Identities=34%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .|.|.||+||||||+++.|+ .+|+.+++.+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l   34 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHH
Confidence            57899999999999999997 579999987554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=5.9e-07  Score=67.26  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=27.3

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138         78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL  109 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i  109 (212)
                      .|.|+||+||||||+++.|+ .+|+.+++++.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~l   34 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhH
Confidence            57789999999999999997 579998886543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.07  E-value=7.9e-07  Score=68.86  Aligned_cols=41  Identities=39%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c----C--CeeeeCCcccccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L----G--AGLINCDQLGHRA  113 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l----g--~~vi~~D~i~~~~  113 (212)
                      ..+|.+|.|+|.|||||||+++.|.. +    +  +.++++|.+.+.+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l   68 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL   68 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhh
Confidence            56799999999999999999999973 2    3  3456777765543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.2e-06  Score=64.23  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +++|+|++|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999973

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.3e-06  Score=63.99  Aligned_cols=31  Identities=29%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH----cCCeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET----LGAGLI  104 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~----lg~~vi  104 (212)
                      ++|.+|+|.|+.||||||+++.|..    .|..++
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~   35 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE   35 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            4689999999999999999988864    366554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=2.4e-06  Score=64.11  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      |.+|.|+|||||||||+++.|.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            67899999999999999999975

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=2.7e-06  Score=62.73  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      |.+++|+|.+|||||||++.|.
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            5689999999999999998775

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.92  E-value=2.2e-06  Score=64.85  Aligned_cols=28  Identities=29%  Similarity=0.470  Sum_probs=24.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+|.+|+|.|+.||||||+++.|++.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.90  E-value=3e-06  Score=62.61  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+|+|+|++||||||+++.|+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.84  E-value=1.8e-05  Score=64.99  Aligned_cols=26  Identities=31%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+..+|||+|++|||||||...|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            34689999999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.6e-05  Score=65.47  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+..+|||+|++|||||||...|..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            45689999999999999999999973

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.77  E-value=7e-06  Score=60.84  Aligned_cols=23  Identities=30%  Similarity=0.156  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.+|.|+|++||||||+++.|+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999999985

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=9.5e-06  Score=65.64  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -.+|++|||.|+.||||||+++.|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4468999999999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=7.8e-06  Score=61.85  Aligned_cols=35  Identities=34%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-c-----CCeeeeCCccc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-L-----GAGLINCDQLG  110 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-l-----g~~vi~~D~i~  110 (212)
                      |.+|.++|.+||||||+++.|+. +     ...+++.|.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r   42 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR   42 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccccee
Confidence            67899999999999999999984 2     24456666543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.76  E-value=8.1e-06  Score=64.14  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCCccc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-L--GAGLINCDQLG  110 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D~i~  110 (212)
                      ...|..|.|.||+||||||+++.|++ +  ++..+++|.+.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            44577788999999999999999984 4  45666777653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=9e-06  Score=59.65  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|.|+||+||||||+++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999984

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.8e-05  Score=60.86  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|.|+||||||||||.+.|..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999998864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.6e-05  Score=61.50  Aligned_cols=25  Identities=40%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ++.+|+|-|+.||||||+++.|+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=58.91  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +|.+|+|-|+.||||||+++.|.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.3e-05  Score=58.04  Aligned_cols=20  Identities=40%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      |.|+||||||||||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999964

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=3.3e-05  Score=58.32  Aligned_cols=20  Identities=40%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      |.|+|||||||||+++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.44  E-value=3.9e-05  Score=59.13  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+|+|+|+.|||||||++.|..
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3789999999999999999963

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=7.1e-05  Score=57.82  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++.+.+|.++.++||+|+||||.+--|+.
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998777763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.5e-05  Score=56.21  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+||||||||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=6e-05  Score=56.91  Aligned_cols=28  Identities=25%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH----cCCeee
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET----LGAGLI  104 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~----lg~~vi  104 (212)
                      .+|+|.|..||||||+++.|.+    .|..++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~   32 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            3789999999999999999874    366543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=6.6e-05  Score=57.74  Aligned_cols=25  Identities=24%  Similarity=0.151  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+|.+|+|-|+.||||||+++.|+.
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999999999984

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00011  Score=56.65  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         71 HLSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .....|.+|.++||+||||||.+--|+.
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456689999999999999998888873

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7e-05  Score=57.94  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGA  101 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~  101 (212)
                      |.+|+|-|+.||||||+++.|+. +..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            78999999999999999999985 543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00016  Score=56.01  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      ...+.|.||+|+||||++++|+. +++.++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            34678999999999999999984 666554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00011  Score=53.12  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      |..|+|+|.++||||||++.|.+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00011  Score=56.60  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             EEEecCCCCcHHHHHHHHH-HcCCeee
Q psy17138         79 IGLTGGIASGKSTIAKYLE-TLGAGLI  104 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~-~lg~~vi  104 (212)
                      +-+.||+|+||||++++|+ .+++.+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            5689999999999999998 4665544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.16  E-value=0.00015  Score=56.90  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      +.-+-|.||+|||||++++.|+ .++++++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~   70 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK   70 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccc
Confidence            4457899999999999999998 46877764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00016  Score=57.31  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      .+.-+-|.||+|||||++++.|+ .++.+++.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            34557799999999999999998 46776653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.14  E-value=0.00019  Score=53.62  Aligned_cols=33  Identities=33%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      +.-+.|+|+||+||||++-.|...|+.++.-|.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~~lv~DD~   46 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGHRLIADDR   46 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCCeEEecCe
Confidence            667889999999999999999888887775453

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.11  E-value=0.00018  Score=53.84  Aligned_cols=33  Identities=27%  Similarity=0.108  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      +.-+.|.|+||+||||++-.|...|+.++.-|.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~~lvaDD~   47 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNHLFVGDDA   47 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCCceecCCe
Confidence            666889999999999999999888887775553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.10  E-value=0.00019  Score=55.22  Aligned_cols=25  Identities=40%  Similarity=0.555  Sum_probs=17.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ...|.++.++||+||||||.+--|+
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999877776

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=4.4e-05  Score=56.39  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .+..|+|+|||||||++.+|.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            366889999999999999997

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.00015  Score=58.89  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=23.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCee--eeCCcc
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGL--INCDQL  109 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~v--i~~D~i  109 (212)
                      -+.+.||+|||||.++|.|++ ++.++  +++..+
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             eEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            356899999999999999985 45544  444444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.0002  Score=54.93  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=34.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCccccccccCCc-hhHHHHHHHhCCccC
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQLGHRAYDVGT-RGNQVVRELFGEDIA  133 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~i~~~~~~~~~-~~~~~~~~~~g~~~~  133 (212)
                      +++.++.++||+||||||.+--|+..    |.  .++.+|-     |..+. +..+...+..|.+++
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt-----~R~gA~eQL~~~a~~l~i~~~   65 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT-----FRAAGGTQLSEWGKRLSIPVI   65 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC-----SSTTHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc-----ccccchhhHhhcccccCceEE
Confidence            46889999999999999987777632    32  3344553     33332 223344556666654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00027  Score=55.57  Aligned_cols=29  Identities=21%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE-TLGAGLIN  105 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~  105 (212)
                      .-+-+.||+|||||++++.|+ .++.+++.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~~~~~   72 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARVPFIT   72 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCCCEEE
Confidence            347899999999999999998 57777764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=0.00017  Score=53.90  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|.+|||||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00026  Score=52.29  Aligned_cols=27  Identities=19%  Similarity=0.164  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ...+..|+|+|.+|+|||||++.|.+.
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            345788999999999999999999853

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.00034  Score=51.30  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=25.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH-HcCC
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGA  101 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~  101 (212)
                      ..+|.+|.|.|+-||||||++|.+. ++|.
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3458899999999999999999997 5765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.99  E-value=0.00022  Score=50.79  Aligned_cols=21  Identities=38%  Similarity=0.290  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|.|+|++|||||||++.|.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999974

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.98  E-value=0.00028  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -..|+|+|.+|||||||++.+.+-
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            356999999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00018  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++-|.|++||||||++-.++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999999874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.98  E-value=0.00019  Score=55.05  Aligned_cols=20  Identities=30%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +-|.||+|+||||+++.|+.
T Consensus        48 lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67999999999999999974

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.95  E-value=0.00023  Score=51.84  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|.+|||||||++.|.+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456789999999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.94  E-value=0.00046  Score=51.18  Aligned_cols=34  Identities=29%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL  109 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i  109 (212)
                      +.=+.|.|+||+||||++-.|...|+.++.-|.+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~~li~DD~~   48 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGHRLVADDNV   48 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCCeEEeCCeE
Confidence            6678999999999999999988888887765543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00039  Score=55.07  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=26.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D  107 (212)
                      +.-+-|.||+|||||++++.++ .+|.+++..+
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            3446799999999999999998 5788876543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00015  Score=57.89  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+..|+|+|||||||++.+|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3779999999999999999963

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=52.05  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|+|+|.+|||||||++.|.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999974

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00032  Score=49.83  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00027  Score=54.88  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++....++|+||+|||||++.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcc
Confidence            367889999999999999999964

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00027  Score=54.48  Aligned_cols=25  Identities=36%  Similarity=0.495  Sum_probs=20.9

Q ss_pred             EEEecCCCCcHHHHHHHHHH-cCCee
Q psy17138         79 IGLTGGIASGKSTIAKYLET-LGAGL  103 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~-lg~~v  103 (212)
                      +-+.||+|+||||+++++++ +++.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~~~~   63 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELGVNL   63 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            56899999999999999984 55544

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00029  Score=53.96  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=18.4

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.||+|+||||+++.++.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            67999999999999999985

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00029  Score=51.82  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.83  E-value=0.00032  Score=50.79  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -..|.|+|++|||||||++.|.+-
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCC
Confidence            356899999999999999999753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00035  Score=59.55  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCC
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCD  107 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D  107 (212)
                      +.=|-++||+|||||-|++.|++ ++.|++.+|
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            33588999999999999999986 677776443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.82  E-value=0.00049  Score=52.65  Aligned_cols=26  Identities=31%  Similarity=0.141  Sum_probs=21.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..++.++.++||+|+||||.+-.|+.
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34578899999999999998888873

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00034  Score=51.14  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +|+|+|.+++|||||++.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.80  E-value=0.00026  Score=52.01  Aligned_cols=22  Identities=32%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|.+|+|||||++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00039  Score=52.02  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999853

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.79  E-value=0.00041  Score=50.51  Aligned_cols=26  Identities=19%  Similarity=0.059  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+-+.|.|+|.+|||||||++.|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.00024  Score=52.51  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      |||+|++++|||||++.|.+-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00043  Score=48.40  Aligned_cols=25  Identities=12%  Similarity=0.145  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +.+|+.|.++|-+||||||+++.|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            5679999999999999999999996

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.74  E-value=0.00046  Score=53.29  Aligned_cols=23  Identities=22%  Similarity=0.102  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +..+.|.||+|+||||+++.|+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999985

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00083  Score=52.78  Aligned_cols=28  Identities=32%  Similarity=0.279  Sum_probs=23.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      -+-|.||+|||||++++.++. ++.+++.
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~~~~~~   68 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETGAFFFL   68 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             eeEEecCCCCCchHHHHHHHHHhCCeEEE
Confidence            367899999999999999984 6776654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.73  E-value=0.0006  Score=49.70  Aligned_cols=27  Identities=30%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.+...|.++|++|||||||++.|.+-
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            445678999999999999999999753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00023  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|+|+|.+++|||||++.|.+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3467899999999999999999964

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00042  Score=52.92  Aligned_cols=20  Identities=25%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +-|.||+|+||||+++.|+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            56899999999999999974

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00042  Score=57.19  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +.+.+|+|+|||||||++.+|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4478899999999999999996

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.66  E-value=0.00078  Score=55.80  Aligned_cols=32  Identities=34%  Similarity=0.382  Sum_probs=27.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      +++..+.+.||+|+|||++++.|+. +|..++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~  184 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  184 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4466899999999999999999985 6877765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00036  Score=51.32  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      |||+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00062  Score=53.00  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ..++.|+|||+|||||++|.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4678999999999999999986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.00073  Score=49.17  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.++|.+|||||||++.|..
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5699999999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.00062  Score=52.57  Aligned_cols=27  Identities=30%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH-HcCCe
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE-TLGAG  102 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~  102 (212)
                      +..+.|.|++|+|||||++.++ .++..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            4578899999999999999886 45443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00074  Score=48.95  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.|.+
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6799999999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00045  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .++|.++-|.|++||||||++-.++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            4568999999999999999999886

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00085  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=23.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++-|.|++||||||++-.++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999999974

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00091  Score=48.70  Aligned_cols=22  Identities=14%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|+|+|.+|||||||++.+.+
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3589999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.50  E-value=0.00056  Score=53.10  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..++.|.||+|+||||+++.+..
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHH
Confidence            34567789999999999999984

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.49  E-value=0.00095  Score=48.24  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.++|++|||||||++.|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3588999999999999999975

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0009  Score=48.70  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|.|+|.+|||||||++.+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00082  Score=50.46  Aligned_cols=21  Identities=29%  Similarity=0.218  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|+|+|++|||||||++.|.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999986

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00061  Score=52.50  Aligned_cols=20  Identities=30%  Similarity=0.213  Sum_probs=18.4

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +-|.||+|+||||+++.++.
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66999999999999999974

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.47  E-value=0.00075  Score=51.76  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++-|.|++||||||++-.++.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            45699999999999999999998863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0008  Score=51.22  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=18.1

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +-|.||+|+||||++++|+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            55899999999999999984

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00099  Score=48.00  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|.|+|..|+|||||++.+..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46789999999999999999975

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0011  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.+.++|.+|+|||||++.+.+
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00094  Score=48.49  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.+..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0011  Score=48.02  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|.|+|.+|+|||||++.+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.42  E-value=0.00034  Score=54.48  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++....++|+||+|||||++.|.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            366788999999999999999974

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00091  Score=48.44  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|.|+|.+|+|||||++.+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00096  Score=48.10  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|||||||++.+..
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999975

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0011  Score=48.28  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.|..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999985

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.001  Score=48.34  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.|.|+|.+|+|||||++.+.+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC
Confidence            56899999999999999999753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0013  Score=53.28  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138         78 IIGLTGGIASGKSTIAKYLET-LGAGLIN  105 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~  105 (212)
                      .+.++||+|+|||.|++.|+. ++.+++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~   82 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLR   82 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeE
Confidence            678999999999999999985 5666553

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.36  E-value=0.001  Score=51.36  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .++.|+|||.|||||++|.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            478899999999999999886

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|||||||++.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4688999999999999999874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0013  Score=47.56  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .|.++|.+|+|||||++.|..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.00028  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+|+|.+++|||||++.|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0013  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|++|+|||||++.|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999999974

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0015  Score=47.60  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+-+.|.|+|.+|+|||||++.+..
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHh
Confidence            3457899999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=47.90  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5699999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0014  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|||||||++.+..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999988864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0014  Score=47.35  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.26  E-value=0.001  Score=50.89  Aligned_cols=26  Identities=23%  Similarity=0.172  Sum_probs=23.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++-|.|++||||||++..++.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            44689999999999999999999873

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0016  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.23  E-value=0.0011  Score=48.93  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .-|+|+|.+.||||||++.|.+.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHh
Confidence            35999999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0016  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|.++|.+|+|||||++.|..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46789999999999999999985

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.22  E-value=0.0012  Score=48.38  Aligned_cols=26  Identities=31%  Similarity=0.197  Sum_probs=22.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+-..|.++|.+|||||||++.|..
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhc
Confidence            44567899999999999999999863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0015  Score=48.09  Aligned_cols=25  Identities=24%  Similarity=0.204  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ++...|.|+|.+|+|||||++.+..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0015  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.157  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..|.++|.+|+|||||++.+..-
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35889999999999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.20  E-value=0.0013  Score=51.56  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ....|.|+|.+||||||+++.|.+.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            3678999999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0015  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|+.|||||||++.+..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            5689999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.19  E-value=0.0013  Score=49.73  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++|.++-|.|++|+||||++-.++.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            55699999999999999999999973

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0018  Score=46.82  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|.|+|.+|+|||||++.|..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35689999999999999999975

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0018  Score=46.77  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|.|+|.+|+|||+|++.+..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999999975

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0018  Score=47.60  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|.+|||||||++.+..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999985

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.002  Score=46.75  Aligned_cols=23  Identities=17%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|.|+|.+|+|||||++.+..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.12  E-value=0.0019  Score=49.59  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|+|+|.+.||||||++.|.+
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHh
Confidence            34599999999999999999964

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.11  E-value=0.001  Score=54.22  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .-+.|+|+.||||||+++.|...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            34789999999999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0021  Score=46.88  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      =+.|.|+|.+|+|||||++.+.+.
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            367999999999999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.04  E-value=0.0015  Score=49.18  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=21.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .++|.++-|.|++||||||++-.++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4569999999999999999987654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.99  E-value=0.0022  Score=50.18  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ..+|.++.|.|++|+||||++..++
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4568999999999999999988886

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0023  Score=46.72  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..|.|+|.+|+|||||++.+..-
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45789999999999999998853

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0013  Score=47.87  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.++|.+|+|||||++.+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998853

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.97  E-value=0.0025  Score=50.36  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ...+++|.|+.|.|||||++.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            36799999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.97  E-value=0.0018  Score=47.10  Aligned_cols=25  Identities=32%  Similarity=0.178  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.++|++|+|||||++.+..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3456789999999999999999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.95  E-value=0.0026  Score=46.08  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|+|.+|+|||||++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0026  Score=46.89  Aligned_cols=22  Identities=41%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -..|.|+|.+|||||||++.+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4568999999999999999995

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0028  Score=46.03  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.++|.+|||||||++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.92  E-value=0.0024  Score=51.01  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..+..+||+|.+.||||||++.|.+-
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            45678999999999999999999853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0025  Score=53.23  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +.-|+|+|.+|+|||||++.|.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            567999999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.87  E-value=0.0016  Score=53.16  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|.|-|+.||||||+++.|+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            45699999999999999999985

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0028  Score=45.90  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|.|+|.+|+|||+|++.+..-
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999863

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0015  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=10.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|.|+|.+|||||||++.|.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46789999999999999987764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0032  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.++|.+|+|||||++.|.+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0031  Score=45.57  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|.+|+|||||++.+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999999875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.78  E-value=0.0026  Score=51.91  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...|.|-|+.||||||+++.|+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            46799999999999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0022  Score=49.17  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++.|+|.-|||||||++.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHHHh
Confidence            4788999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.68  E-value=0.0031  Score=52.62  Aligned_cols=25  Identities=36%  Similarity=0.097  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.-+|.|+||.||||||++..+..
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhh
Confidence            4456788999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0038  Score=45.94  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|.+|+|||||++.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            4699999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.63  E-value=0.0022  Score=52.33  Aligned_cols=23  Identities=30%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHc
Q psy17138         77 YIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..|.|-|+.||||||+++.|+..
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999863

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.62  E-value=0.0039  Score=47.47  Aligned_cols=22  Identities=41%  Similarity=0.375  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -+.|.|+|.+|||||||++.+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999986

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0046  Score=45.33  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -..|+++|.+|+|||||++.+..-
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999988754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.0056  Score=44.80  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.++|.+|+|||+|++.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999998875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.30  E-value=0.0054  Score=48.36  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      +..+||+|-+-+|||||++.|..-
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.28  E-value=0.0024  Score=51.59  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=19.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      +-|.|++|+||||++|.|.++
T Consensus        31 vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh
Confidence            678999999999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0057  Score=45.12  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|.+|+|||||++.+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0067  Score=48.40  Aligned_cols=27  Identities=7%  Similarity=-0.085  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ...+|...+|.|++|+|||||+..+..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            366799999999999999999999974

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.12  E-value=0.0061  Score=46.31  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=18.1

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|.|++|||||.|+..++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            57999999999999999973

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.10  E-value=0.0068  Score=49.94  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=23.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHc-CCee--eeCCcccc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL-GAGL--INCDQLGH  111 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l-g~~v--i~~D~i~~  111 (212)
                      +-++||+|+|||-++|.|+.+ +.++  +|+....+
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e  106 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE  106 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred             eeeeCCCCccHHHHHHHHHhhcccceeehhhhhccc
Confidence            677899999999999999864 4444  35544433

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.08  E-value=0.0073  Score=48.70  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .+.++||+|+|||.+++.|+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            6779999999999999999964

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0064  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +.+..|.|++|+|||||+-.|+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            7788999999999999998886

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.008  Score=43.69  Aligned_cols=22  Identities=41%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|..|+||||+++.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999999974

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0074  Score=46.27  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+-|.||+|+||||++++++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            466899999999999999974

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0079  Score=45.30  Aligned_cols=23  Identities=9%  Similarity=-0.003  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      +-.+-+.||+|+||||+++.++.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34477899999999999999985

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.88  E-value=0.0084  Score=48.53  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=18.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+-++||+|+|||.+++.|++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            345589999999999999984

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.84  E-value=0.0093  Score=43.50  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..|.|+|..|+|||||++.+..
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999974

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0059  Score=48.42  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -.+|+|+|+.++|||||++.|.+.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            568999999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.0077  Score=45.37  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      --|+++|..+||||||+..|.
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHH
Confidence            349999999999999999995

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0078  Score=47.32  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .+.|.++-|.|++||||||+|-.++
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHH
Confidence            4458999999999999999998886

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.74  E-value=0.0085  Score=47.23  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +-|+|+|..|||||||+..|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            358999999999999999995

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.69  E-value=0.0068  Score=48.50  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      -|||+|.+-||||||++.|.+.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.60  E-value=0.0094  Score=44.16  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -||++|...+|||||++.|.+
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            379999999999999999975

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.01  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -+-|+|+|..|||||||+..|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHH
Confidence            3469999999999999999995

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.20  E-value=0.0089  Score=46.77  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=12.6

Q ss_pred             EEEecCCCCcHHHHH
Q psy17138         79 IGLTGGIASGKSTIA   93 (212)
Q Consensus        79 igl~G~~GsGKSTl~   93 (212)
                      +.|.|++||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            458899999999864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.13  E-value=0.019  Score=42.80  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      --|+|+|...+|||||+..|.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            4599999999999999999975

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.10  E-value=0.0097  Score=47.05  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=12.7

Q ss_pred             EEEecCCCCcHHHHH
Q psy17138         79 IGLTGGIASGKSTIA   93 (212)
Q Consensus        79 igl~G~~GsGKSTl~   93 (212)
                      +.|.|++||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            457899999999875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.95  E-value=0.014  Score=45.98  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.|.++-|.|++||||||+|-.++.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHH
Confidence            35588999999999999999988863

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.85  E-value=0.025  Score=42.19  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -|+++|...+|||||+..|.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999998864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.83  E-value=0.02  Score=45.12  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .+.|.++-|.|++||||||+|-.++
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             cccceeEEEecCCCcHHHHHHHHHH
Confidence            5669999999999999999987775

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.019  Score=45.20  Aligned_cols=21  Identities=33%  Similarity=0.219  Sum_probs=18.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|+|++|+|||+++..|+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            457999999999999999985

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.015  Score=47.96  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=16.6

Q ss_pred             EEEecCCCCcHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~   97 (212)
                      +.|+|++|||||++++.+.
T Consensus        53 ~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7899999999999987654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.022  Score=42.72  Aligned_cols=21  Identities=29%  Similarity=0.234  Sum_probs=18.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~   98 (212)
                      -+.|+|++|.|||+++..|+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            368999999999999999985

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.019  Score=47.04  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             CeEEEEecCCCCcHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKY   95 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~   95 (212)
                      ..+..|+||+|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            56899999999999988744

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.55  E-value=0.017  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .|+++|.-.||||||++.|.|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            3789999999999999999974

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.42  E-value=0.019  Score=45.15  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      |+++|.-.||||||++.|.+.
T Consensus        29 ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHhCC
Confidence            778999999999999999974

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.22  E-value=0.034  Score=39.25  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.1

Q ss_pred             CeEEEEecCCCCcHHH-HHHHHHH
Q psy17138         76 PYIIGLTGGIASGKST-IAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKST-l~~~L~~   98 (212)
                      |.+-.++||..||||| |++.+..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6777899999999999 7777654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.044  Score=42.43  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH----HcCCe--eeeCCc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLE----TLGAG--LINCDQ  108 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~----~lg~~--vi~~D~  108 (212)
                      ...+.++.+.|.-|.||||++-.|+    ..|..  ++|+|.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4556788899999999999777665    44654  468884

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.11  E-value=0.028  Score=44.36  Aligned_cols=26  Identities=31%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ...+|..++|.|++|+|||||+..+.
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            46689999999999999999988885

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.94  E-value=0.037  Score=42.62  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHH----HcCCe--eeeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLE----TLGAG--LINCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~----~lg~~--vi~~D~  108 (212)
                      +.+|+|.|.=|+||||++-.|+    ..|..  ++|+|.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4689999999999999987776    34654  568885

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.87  E-value=0.042  Score=42.99  Aligned_cols=27  Identities=26%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      .++...+.+.||.++||||++..|..+
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            345678899999999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.60  E-value=0.047  Score=40.64  Aligned_cols=24  Identities=17%  Similarity=-0.039  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.-+-+.|++||||||+++.++.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999999999986

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.42  E-value=0.033  Score=42.18  Aligned_cols=20  Identities=30%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             EEEEecCCCCcHHHHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~   97 (212)
                      -|+++|..++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999998774

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.23  E-value=0.042  Score=37.77  Aligned_cols=28  Identities=25%  Similarity=0.120  Sum_probs=19.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHH-HHcCC
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYL-ETLGA  101 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L-~~lg~  101 (212)
                      ..-...-|.+|.|||||+++-.+ ...|.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            34456677999999999988544 34444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.21  E-value=0.055  Score=42.19  Aligned_cols=27  Identities=26%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~l   99 (212)
                      ..++..++++|-+-+|||||++.|.+.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCceEEEEEecCccchhhhhhhhhcc
Confidence            445788999999999999999999975

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.20  E-value=0.041  Score=41.36  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLI  104 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi  104 (212)
                      .++...+.+.||+++|||+++..|.. ++-.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi   82 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   82 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence            34467889999999999999988875 443333

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.12  E-value=0.04  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHc
Q psy17138         79 IGLTGGIASGKSTIAKYLETL   99 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~l   99 (212)
                      |.|.|+.|+||+++++.|...
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHh
Confidence            688999999999999999753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.11  E-value=0.074  Score=41.37  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHH----HHcCCee--eeCCc
Q psy17138         76 PYIIGLTGGIASGKSTIAKYL----ETLGAGL--INCDQ  108 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L----~~lg~~v--i~~D~  108 (212)
                      +.+|+|.|.=|.||||++--|    +..|..+  +|+|.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            678899999999999966555    4567654  68884

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.92  E-value=0.077  Score=39.43  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=24.5

Q ss_pred             CeEEEEe-cCCCCcHHHHHHHHH----HcCC--eeeeCCc
Q psy17138         76 PYIIGLT-GGIASGKSTIAKYLE----TLGA--GLINCDQ  108 (212)
Q Consensus        76 ~~iigl~-G~~GsGKSTl~~~L~----~lg~--~vi~~D~  108 (212)
                      +++|+++ |.-|+||||++-.|+    ..|.  .++|+|.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4678887 778999999998776    3354  4568874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.1  Score=40.02  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=26.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHH----HcCCe--eeeCCc
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLE----TLGAG--LINCDQ  108 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~----~lg~~--vi~~D~  108 (212)
                      ....+|.+.|.=|+||||++-.|+    ..|..  ++|+|.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            346788899999999999765554    45654  458884

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.87  E-value=0.023  Score=38.64  Aligned_cols=22  Identities=14%  Similarity=-0.081  Sum_probs=18.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~   93 (212)
                      ..+++..+.|.+|.|||||+.+
T Consensus         3 ~l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTTTH
T ss_pred             HHHcCCcEEEEcCCCCChhHHH
Confidence            3567888999999999999655

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.78  E-value=0.051  Score=40.03  Aligned_cols=23  Identities=43%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcC
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLG  100 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg  100 (212)
                      ++-|+|++.||||..+..|...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC
Confidence            36799999999999999997543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.092  Score=38.39  Aligned_cols=32  Identities=19%  Similarity=-0.021  Sum_probs=22.9

Q ss_pred             eEEEEecCC-CCcHHHHHHHHH----HcCCeee--eCCc
Q psy17138         77 YIIGLTGGI-ASGKSTIAKYLE----TLGAGLI--NCDQ  108 (212)
Q Consensus        77 ~iigl~G~~-GsGKSTl~~~L~----~lg~~vi--~~D~  108 (212)
                      ..+-|+|-. |+||||++-.|+    ..|..++  +.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            457788886 999999887776    4576654  5543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.063  Score=37.42  Aligned_cols=22  Identities=32%  Similarity=0.120  Sum_probs=17.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYL   96 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L   96 (212)
                      +|.+-.|+||..|||||-+=..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~   22 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRR   22 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHH
Confidence            5788899999999999955443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.41  E-value=0.054  Score=41.08  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ..|+++|-..+|||||+..|.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHH
Confidence            347999999999999999996

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.29  E-value=0.075  Score=47.03  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.|.|.||||||+-+|.+..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4578899999999999999998854

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.26  E-value=0.099  Score=38.81  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             CeEEEEe-cCCCCcHHHHHHHHHH----cCCe--eeeCCc
Q psy17138         76 PYIIGLT-GGIASGKSTIAKYLET----LGAG--LINCDQ  108 (212)
Q Consensus        76 ~~iigl~-G~~GsGKSTl~~~L~~----lg~~--vi~~D~  108 (212)
                      +++|+++ +.-|+||||++-.|+.    .|..  ++|+|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5788888 6789999999988863    4554  467774

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.22  E-value=0.15  Score=33.36  Aligned_cols=36  Identities=25%  Similarity=0.127  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      ..+...+-++|-.|+|-|.|+++|...|+.|--+|.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~   40 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI   40 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence            445677889999999999999999999998887764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.055  Score=41.53  Aligned_cols=21  Identities=33%  Similarity=0.322  Sum_probs=18.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .-|+++|..++|||||+..|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            468999999999999998885

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.98  E-value=0.083  Score=46.94  Aligned_cols=25  Identities=24%  Similarity=0.104  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.|.|.||||||+-+|.+..
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999999998864

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.083  Score=38.67  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|+|+|.+  ||||...+|..
T Consensus         2 ~kvI~VTGTn--GKTTt~~mi~~   22 (214)
T d1gg4a4           2 ARVVALTGSS--GKTSVKEMTAA   22 (214)
T ss_dssp             CEEEEEECSS--CHHHHHHHHHH
T ss_pred             CCEEEEeCCC--cHHHHHHHHHH
Confidence            4699999999  99999999985

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.86  E-value=0.062  Score=41.35  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             EEEecCCCCcHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~   97 (212)
                      |+++|..++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            9999999999999999884

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.70  E-value=0.056  Score=42.53  Aligned_cols=28  Identities=14%  Similarity=-0.064  Sum_probs=23.9

Q ss_pred             CCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         70 PHLSPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      -....+|..++|.|++|+|||+++..+.
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             cccccCCceEeeccCCCCChHHHHHHHH
Confidence            3456789999999999999999998764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.68  E-value=0.092  Score=46.66  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.|.|.||||||+-+|.+..
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            4578999999999999999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.058  Score=43.74  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy17138         77 YIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        77 ~iigl~G~~GsGKSTl~~~L~   97 (212)
                      +-|+|+|..++|||||+..|.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            349999999999999999995

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.19  E-value=0.097  Score=47.09  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.|.|.||||||+-+|.+..
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~  145 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQ  145 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999998887764

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.96  E-value=0.099  Score=38.49  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=19.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+.+|||+|.+  ||||+..+|..
T Consensus        13 ~~~~iAITGTn--GKTTt~~~l~~   34 (207)
T d1j6ua3          13 KKEEFAVTGTD--GKTTTTAMVAH   34 (207)
T ss_dssp             CCCEEEEECSS--SHHHHHHHHHH
T ss_pred             CCCEEEEECCC--CHHHHHHHHHH
Confidence            36789999998  99999999974

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.87  E-value=0.075  Score=41.98  Aligned_cols=26  Identities=19%  Similarity=-0.026  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138         72 LSPYPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        72 ~~~~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      ...+|..++|.|++|+|||+++..+.
T Consensus        64 pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          64 PIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             CccCCCEEEeecCCCCChHHHHHHHH
Confidence            56789999999999999999987664

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.69  E-value=0.07  Score=43.98  Aligned_cols=20  Identities=30%  Similarity=0.292  Sum_probs=17.3

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy17138         79 IGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        79 igl~G~~GsGKSTl~~~L~~   98 (212)
                      +.|+|++|+|||+++.-|+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            37899999999999988774

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.65  E-value=0.12  Score=45.86  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .++..|.|.|.||||||+-+|.+..
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~  116 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMR  116 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999999998864

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.33  E-value=0.13  Score=36.12  Aligned_cols=23  Identities=22%  Similarity=0.131  Sum_probs=19.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYL   96 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L   96 (212)
                      ..|.+-.|+||..|||||-+=..
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~   27 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRR   27 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHH
Confidence            56899999999999999955443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.30  E-value=0.12  Score=46.38  Aligned_cols=25  Identities=20%  Similarity=0.082  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+...|.|.|.||||||.-+|.+..
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~  143 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIM  143 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999877764

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.17  Score=36.88  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=18.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|||+|.+  ||||...+|..
T Consensus        11 ~~vI~VTGT~--GKTTt~~~l~~   31 (204)
T d2jfga3          11 APIVAITGSN--GKSTVTTLVGE   31 (204)
T ss_dssp             SCEEEEECSS--SHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHH
Confidence            5689999998  99999999985

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.18  Score=37.37  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=19.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+..+|||+|.+  ||||...+|..
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~   25 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQ   25 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHH
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHH
Confidence            345799999998  99999999874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.17  Score=40.38  Aligned_cols=19  Identities=21%  Similarity=0.219  Sum_probs=16.2

Q ss_pred             CCeEEEEecCCCCcHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~   93 (212)
                      .+.+-.+-|.||+|||||.
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3567789999999999976

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.30  E-value=0.17  Score=37.26  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      ..+|||+|.+  ||||...+|..
T Consensus        12 ~~~I~ITGTn--GKTTt~~~l~~   32 (215)
T d1p3da3          12 RHGIAVAGTH--GKTTTTAMISM   32 (215)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHH
Confidence            4689999998  99999998874

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.23  E-value=0.2  Score=40.01  Aligned_cols=19  Identities=21%  Similarity=0.230  Sum_probs=16.2

Q ss_pred             CCeEEEEecCCCCcHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIA   93 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~   93 (212)
                      .+.+-.+-|.||+|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3566679999999999998

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.18  Score=40.30  Aligned_cols=19  Identities=21%  Similarity=0.258  Sum_probs=16.1

Q ss_pred             CeEEEEecCCCCcHHHHHH
Q psy17138         76 PYIIGLTGGIASGKSTIAK   94 (212)
Q Consensus        76 ~~iigl~G~~GsGKSTl~~   94 (212)
                      +.+-.+.|.||+|||||.-
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            5677899999999999653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.27  E-value=0.32  Score=35.02  Aligned_cols=18  Identities=22%  Similarity=0.146  Sum_probs=14.0

Q ss_pred             EEecCCCCcHHHHHHHHH
Q psy17138         80 GLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        80 gl~G~~GsGKSTl~~~L~   97 (212)
                      -+.+|.|||||.++-++.
T Consensus        27 lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          27 LIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHHH
Confidence            477999999998665554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.24  E-value=0.12  Score=37.85  Aligned_cols=17  Identities=29%  Similarity=0.284  Sum_probs=13.9

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy17138         78 IIGLTGGIASGKSTIAK   94 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~   94 (212)
                      -+.+.+|.|||||+++-
T Consensus        42 ~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CEEEECSSHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHH
Confidence            35689999999998753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.65  E-value=0.25  Score=37.99  Aligned_cols=19  Identities=11%  Similarity=-0.052  Sum_probs=16.7

Q ss_pred             CCCCeEEEEecCCCCcHHH
Q psy17138         73 SPYPYIIGLTGGIASGKST   91 (212)
Q Consensus        73 ~~~~~iigl~G~~GsGKST   91 (212)
                      ..++..+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            5578889999999999996

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.58  E-value=0.32  Score=34.43  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=18.4

Q ss_pred             CCeEEEEecCCCC-cHHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIAS-GKSTIAKYLET   98 (212)
Q Consensus        75 ~~~iigl~G~~Gs-GKSTl~~~L~~   98 (212)
                      +|..|+|.|..|| |++| +..+..
T Consensus         1 ~pK~I~IlGsTGSIG~~t-L~Vi~~   24 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHST-LDLIER   24 (150)
T ss_dssp             CCEEEEEETTTSHHHHHH-HHHHHH
T ss_pred             CCcEEEEECCCcHHHHHH-HHHHHc
Confidence            4788999999999 9888 455554

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.56  E-value=0.24  Score=37.10  Aligned_cols=23  Identities=13%  Similarity=0.099  Sum_probs=17.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH
Q psy17138         75 YPYIIGLTGGIASGKSTIAKYLE   97 (212)
Q Consensus        75 ~~~iigl~G~~GsGKSTl~~~L~   97 (212)
                      .|+-+.+++|.|||||+++-+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHH
Confidence            35567889999999998765443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.92  E-value=0.73  Score=29.40  Aligned_cols=31  Identities=19%  Similarity=0.089  Sum_probs=27.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138         78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQ  108 (212)
Q Consensus        78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~  108 (212)
                      .|=++|-.|+|-|-|+++|...|+.|--+|.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~   33 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNI   33 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeC
Confidence            3667899999999999999999999887774

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=80.69  E-value=0.47  Score=36.89  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=19.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138         74 PYPYIIGLTGGIASGKSTIAKYLET   98 (212)
Q Consensus        74 ~~~~iigl~G~~GsGKSTl~~~L~~   98 (212)
                      .+-.+|+|+|.|  ||||.+.+|..
T Consensus        37 ~~lkvI~VTGTN--GKtST~~~i~~   59 (296)
T d2gc6a2          37 QQGRYIHVTGTN--GKGSAANAIAH   59 (296)
T ss_dssp             GSSCEEEEECSS--SHHHHHHHHHH
T ss_pred             hhCCEEEEeccC--cHHHHHHHHHH
Confidence            346799999999  89999999985