Psyllid ID: psy17231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIGTDSFKLGGRGSEEVF
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHcccccccccccccEEcEEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEccccccccHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHEEEEEEccccccccEEHEEEccccccccccEEccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcHHHHEEEEcccccHHHccEEEEEcccHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masikvpeqkvilcgeygvgksslfrryaydtfissssrkstlgldnfnkeykvddrsiQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFlcgnneqchNLISSTYktscktgegVEEMFADIGRQLILSNRSrlelqtmgaggigtdsfklggrgseevf
Flexible Loop (DISEMBL)
masikvpeqkvilcgeygvgksslFRRYAYDTfissssrkstlgldnfnkeykvddrsIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQtmgaggigtdsfklggrgseevf
Low Complexity Region (SEG)
MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIGTDSFKLGGRGSEEVF
Disordered region (IsUnstruct)
********QKVILCGEYGVGKSSLFRRYAYDTFISS*****TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ***********************
Disordered Region (DISOPRED)
****KVP*QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGR************************************
Disordered Region (DISEMBL)
MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIGTDSFKLGGRGSEEVF
Disordered Region (DISPRO)
*ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNR*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIGTDSFKLGGRGSEEVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9C2L8	205	Probable Ras-related prot	N/A	N/A	0.841	0.775	0.333	4e-18
Q54NU2	204	Ras-related protein Rab-1	yes	N/A	0.777	0.720	0.355	1e-17
O97572	207	Ras-related protein Rab-7	yes	N/A	0.809	0.739	0.335	1e-17
P35284	243	Ras-related protein Rab-1	yes	N/A	0.619	0.481	0.4	2e-17
Q52NJ2	205	Ras-related protein Rab-1	yes	N/A	0.587	0.541	0.429	2e-17
Q6IQ22	244	Ras-related protein Rab-1	yes	N/A	0.613	0.475	0.403	2e-17
P35283	243	Ras-related protein Rab-1	yes	N/A	0.613	0.477	0.403	2e-17
Q6NYB7	205	Ras-related protein Rab-1	no	N/A	0.587	0.541	0.429	2e-17
P62821	205	Ras-related protein Rab-1	no	N/A	0.587	0.541	0.429	2e-17
P62820	205	Ras-related protein Rab-1	no	N/A	0.587	0.541	0.429	2e-17

>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=17E5.300 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 24/183 (13%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           M+S K    KVI+ G+ GVGK+SL  +Y    F  S+S K+T+G D   +E  VDDR + 
Sbjct: 1   MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKF--SASYKATIGADFLTREVLVDDRQVT 58

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 115
           MQLWDT G ER  S+  ++Y+ A+  +LV+ ++N+ SF  L     E +  A     +N 
Sbjct: 59  MQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNF 118

Query: 116 KIFLCGNN---EQCHNLISST--------------YKTSCKTGEGVEEMFADIGRQLILS 158
              + GN    E+   +IS+               ++TS K    VE+ F  I R  ++ 
Sbjct: 119 PFVVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQ 178

Query: 159 NRS 161
             S
Sbjct: 179 EES 181

Protein transport. Probably involved in vesicular traffic.
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 22/169 (13%)

Query: 7   PEQ----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQ 62
           PE     K++L G+ GVGKS L  R+A D++  + +  ST+G+D   K   +D ++I++Q
Sbjct: 5   PEHDFFFKILLIGDSGVGKSCLLLRFADDSW--TDTHISTIGVDFKIKTLNLDGKTIKLQ 62

Query: 63  LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCG 121
           +WDT G ER  +ITSSYY+ A+  ILV+   +  SF  + Q + EI  YA EN    L G
Sbjct: 63  IWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVG 122

Query: 122 NNEQCHN--LISST-------------YKTSCKTGEGVEEMFADIGRQL 155
           N     N  ++ S               +TS K    VEE F  + R +
Sbjct: 123 NKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171

Dictyostelium discoideum (taxid: 44689)

>sp|O97572|RAB7A_RABIT Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 23/176 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + MQ+WDT G 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S++ ++Y+ A+  +LVF +    +F  L    LE +  A     EN    + GN  
Sbjct: 68  ERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKI 127

Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
              N   +T               ++TS K    VE+ F  I R   L   + +EL
Sbjct: 128 DLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVEL 182

Key regulator in endo-lysosomal trafficking. Governs early-to-late endosomal maturation, microtubule minus-end as well as plus-end directed endosomal migration and positioning, and endosome-lysosome transport through different protein-protein interaction cascades. Plays a central role, not only in endosomal traffic, but also in many other cellular and physiological events, such as growth-factor-mediated cell signaling, nutrient-transportor mediated nutrient uptake, neurotrophin transport in the axons of neurons and lipid metabolism. Also involved in regulation of some specialized endosomal membrane trafficking, such as maturation of melanosomes, pathogen-induced phagosomes (or vacuoles) and autophagosomes. Plays important roles in microbial pathogen infection and survival, as well as in participating in the life cycle of viruses. Microbial pathogens possess survival strategies governed by RAB7A, sometimes by employing RAB7A function (e.g. Salmonella) and sometimes by excluding RAB7A function (e.g. Mycobacterium). In concert with RAC1, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Controls the endosomal trafficking and neurite outgrowth signaling of NTRK1/TRKA. Regulates the endocytic trafficking of the EGF-EGFR complex by regulating its lysosomal degradation.

Oryctolagus cuniculus (taxid: 9986)

>sp|P35284|RAB12_RAT Ras-related protein Rab-12 OS=Rattus norvegicus GN=Rab12 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 43  QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 100

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN   C  
Sbjct: 101 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 160

May be involved in vesicular trafficking and neurotransmitter release.

Rattus norvegicus (taxid: 10116)

>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 71  ERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGN 124

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Sus scrofa (taxid: 9823)

>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 44  QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 101

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCH 127
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN   C 
Sbjct: 102 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 160

Homo sapiens (taxid: 9606)

>sp|P35283|RAB12_MOUSE Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 43  QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 100

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCH 127
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN   C 
Sbjct: 101 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 159

Mus musculus (taxid: 10090)

>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 71  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Rattus norvegicus (taxid: 10116)

>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 71  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 71  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
91083305	207	PREDICTED: similar to rab [Tribolium cas	0.910	0.830	0.696	8e-74
242018215	207	GTP-binding protein YPT31/YPT8, putative	0.925	0.845	0.663	2e-72
383857745	207	PREDICTED: GTP-binding protein ypt7-like	0.925	0.845	0.663	4e-71
340723419	207	PREDICTED: GTP-binding protein ypt7-like	0.925	0.845	0.663	4e-71
307175180	207	GTP-binding protein ypt7 [Camponotus flo	0.925	0.845	0.663	5e-71
323434871	207	Rab7 [Helicoverpa zea]	0.962	0.879	0.635	7e-71
380017524	207	PREDICTED: GTP-binding protein ypt7-like	0.925	0.845	0.663	8e-71
19923014	213	RabX6, isoform A [Drosophila melanogaste	0.989	0.877	0.616	3e-70
194864654	213	GG14733 [Drosophila erecta] gi|195490177	0.989	0.877	0.611	3e-70
442629247	222	RabX6, isoform B [Drosophila melanogaste	0.989	0.842	0.616	4e-70

>gi|91083305|ref|XP_974665.1| PREDICTED: similar to rab [Tribolium castaneum] gi|270007739|gb|EFA04187.1| hypothetical protein TcasGA2_TC014436 [Tribolium castaneum]

 Score =  281 bits (719), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 156/191 (81%), Gaps = 19/191 (9%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+IK+PEQKVILCGEYGVGKSS+FRR+  +TF++++ RKSTLGLD+++K Y+V DR ++
Sbjct: 1   MATIKIPEQKVILCGEYGVGKSSIFRRFTNNTFVTATDRKSTLGLDHYSKTYRVCDRDLK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVASITSSYYKFAEAA+LVF+LDN ASFHVLSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASITSSYYKFAEAAVLVFALDNPASFHVLSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLI+ TYKTSCKTGEG+EEMF DI  QL+ SNRS
Sbjct: 121 GNKADLLSDVPQITDSEIEAFCEQCHNLITGTYKTSCKTGEGIEEMFTDIAYQLVQSNRS 180

Query: 162 RLELQTMGAGG 172
           RLELQ+M   G
Sbjct: 181 RLELQSMEQHG 191

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018215|ref|XP_002429575.1| GTP-binding protein YPT31/YPT8, putative [Pediculus humanus corporis] gi|212514533|gb|EEB16837.1| GTP-binding protein YPT31/YPT8, putative [Pediculus humanus corporis]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 160/199 (80%), Gaps = 24/199 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MAS+K+P+QKVILCGE+GVGKSS+FRRYA +TF+++  RKSTLGLD+F+K Y VD R I+
Sbjct: 1   MASVKIPKQKVILCGEFGVGKSSIFRRYATNTFVTAVDRKSTLGLDHFDKTYAVDGREIK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVASITSSYYKFAEAAILVF+LDNA+SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASITSSYYKFAEAAILVFALDNASSFHILSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS  YKTSCKT EG++EMF+DI +QL+ SN+S
Sbjct: 121 GNKSDLISPVPQISDNDIESFCEQCHNLISGVYKTSCKTAEGIDEMFSDIAQQLVESNKS 180

Query: 162 RLELQTMGAGGIGTDSFKL 180
           R++L+ + A     DSFK+
Sbjct: 181 RIDLKNLDA-----DSFKV 194

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857745|ref|XP_003704364.1| PREDICTED: GTP-binding protein ypt7-like [Megachile rotundata]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 24/199 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++KV EQKVILCGEYGVGK+S+FRR+A +TF++S+ RKSTLGLDN +KEY V+DR I+
Sbjct: 1   MATVKVTEQKVILCGEYGVGKTSIFRRFANNTFVTSNDRKSTLGLDNIDKEYVVEDRRIR 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN +SFH+LSQHLLEIVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNPSSFHLLSQHLLEIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS  YKTSCKTGEG+ EMF DI + L+ +NRS
Sbjct: 121 GNKSDLESTASQVTDAEMEQFCEQCHNLISGIYKTSCKTGEGIHEMFEDIAQHLVEANRS 180

Query: 162 RLELQTMGAGGIGTDSFKL 180
           R+EL  M       D FK+
Sbjct: 181 RMELHEMDK-----DRFKI 194

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723419|ref|XP_003400087.1| PREDICTED: GTP-binding protein ypt7-like [Bombus terrestris] gi|350427736|ref|XP_003494860.1| PREDICTED: GTP-binding protein ypt7-like [Bombus impatiens]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 24/199 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++KV EQKVILCGEYGVGK+S+FRR+A +TF++SS RKSTLGLDN +KEY V+DR I+
Sbjct: 1   MATVKVTEQKVILCGEYGVGKTSIFRRFANNTFVTSSDRKSTLGLDNIDKEYVVEDRRIR 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS  YKTSCKTGEG+ EMF DI + L+ +NRS
Sbjct: 121 GNKSDLESTAPQVTDAEMEQFCEQCHNLISGIYKTSCKTGEGIHEMFEDIAQHLVEANRS 180

Query: 162 RLELQTMGAGGIGTDSFKL 180
           R+EL  M       D FK+
Sbjct: 181 RMELHEMDK-----DRFKI 194

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175180|gb|EFN65273.1| GTP-binding protein ypt7 [Camponotus floridanus]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 24/199 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++KV EQKVILCGEYGVGK+S+FRR+A +TF++SS RKSTLGLDN +KEY V+DR I+
Sbjct: 1   MATVKVTEQKVILCGEYGVGKTSIFRRFANNTFVASSDRKSTLGLDNIDKEYVVEDRRIR 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS  YKTSCKTGEG+ EMF DI + L+ +NRS
Sbjct: 121 GNKSDLESVAPQVTDVEMEQFCEQCHNLISGIYKTSCKTGEGINEMFEDIAQHLVEANRS 180

Query: 162 RLELQTMGAGGIGTDSFKL 180
           R+EL  M       D FK+
Sbjct: 181 RMELHEMDK-----DRFKI 194

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|323434871|gb|ADX66426.1| Rab7 [Helicoverpa zea]

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 158/206 (76%), Gaps = 24/206 (11%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA +K P  KVILCGEYGVGKSS+FRR+  +TF+ +S R+STLGLD+F K Y++ D++++
Sbjct: 1   MAVVKTPVLKVILCGEYGVGKSSIFRRFINNTFVPNSDRRSTLGLDHFEKPYQLTDKTVK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMER+AS+TSSYYKFAEAAILVFSLDNA+SFHVLSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHVLSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS+TYKTSCKTG+G+EEMF DI  QL+ SNRS
Sbjct: 121 GNKSDLEGSSPQVTDADIETFCEQCHNLISTTYKTSCKTGQGIEEMFTDIAIQLVESNRS 180

Query: 162 RLELQTMGAGGIGTDSFKLGGRGSEE 187
           R+ELQT+       +SFK+      E
Sbjct: 181 RIELQTLDH-----NSFKISNPEPVE 201

Source: Helicoverpa zea

Species: Helicoverpa zea

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017524|ref|XP_003692704.1| PREDICTED: GTP-binding protein ypt7-like [Apis florea]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 24/199 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++KV EQKVILCGEYGVGK+S+FRR+A +TFI+S+ RKSTLGLDN +KEY V+DR I+
Sbjct: 1   MATVKVTEQKVILCGEYGVGKTSIFRRFANNTFIASNDRKSTLGLDNIDKEYVVEDRRIR 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCHNLIS  YKTSCKTGEG+ EMF DI + L+ +NRS
Sbjct: 121 GNKSDLESSSPQVTDAEMEQFCEQCHNLISGIYKTSCKTGEGIHEMFEDIAQHLVEANRS 180

Query: 162 RLELQTMGAGGIGTDSFKL 180
           R+EL  M       D FK+
Sbjct: 181 RMELHEMDK-----DRFKI 194

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19923014|ref|NP_612052.1| RabX6, isoform A [Drosophila melanogaster] gi|7291991|gb|AAF47406.1| RabX6, isoform A [Drosophila melanogaster] gi|17946473|gb|AAL49269.1| RE70650p [Drosophila melanogaster] gi|220958190|gb|ACL91638.1| RabX6-PA [synthetic construct]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 160/206 (77%), Gaps = 19/206 (9%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++++P+QKVILCG+YGVGKSSLFRR+A +TFI+ + RKSTLGLD+ ++EY V+++ I+
Sbjct: 1   MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCH+LIS+TYKTSC++G GVEEMF DI RQL+ +NRS
Sbjct: 121 GNKSDLDGREPEVSDEEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQLVHANRS 180

Query: 162 RLELQTMGAGGIGTDSFKLGGRGSEE 187
           ++ELQ +       D+   G   +EE
Sbjct: 181 KMELQALEHKSFQVDTASSGAATNEE 206

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864654|ref|XP_001971045.1| GG14733 [Drosophila erecta] gi|195490177|ref|XP_002093033.1| GE21097 [Drosophila yakuba] gi|190652828|gb|EDV50071.1| GG14733 [Drosophila erecta] gi|194179134|gb|EDW92745.1| GE21097 [Drosophila yakuba]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 160/206 (77%), Gaps = 19/206 (9%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++++P+QKVILCG+YGVGKSSLFRR+A +TF++ + RKSTLGLD+ ++EY V+++ I+
Sbjct: 1   MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFVTDTDRKSTLGLDHIDREYSVNEKQIK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCH+LIS+TYKTSC++G GVEEMF DI RQL+ +NRS
Sbjct: 121 GNKSDLEGREPEVSDEEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQLVHANRS 180

Query: 162 RLELQTMGAGGIGTDSFKLGGRGSEE 187
           ++ELQ +       D+   G   +EE
Sbjct: 181 KMELQALEHKSFQVDTASSGAATNEE 206

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629247|ref|NP_001261219.1| RabX6, isoform B [Drosophila melanogaster] gi|440215083|gb|AGB93914.1| RabX6, isoform B [Drosophila melanogaster]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 160/206 (77%), Gaps = 19/206 (9%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA++++P+QKVILCG+YGVGKSSLFRR+A +TFI+ + RKSTLGLD+ ++EY V+++ I+
Sbjct: 1   MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIK 60

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query: 121 GNN-------------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           GN                    EQCH+LIS+TYKTSC++G GVEEMF DI RQL+ +NRS
Sbjct: 121 GNKSDLDGREPEVSDEEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQLVHANRS 180

Query: 162 RLELQTMGAGGIGTDSFKLGGRGSEE 187
           ++ELQ +       D+   G   +EE
Sbjct: 181 KMELQALEHKSFQVDTASSGAATNEE 206

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
FB|FBgn0035155	213	RabX6 "RabX6" [Drosophila mela	0.645	0.572	0.754	9.8e-66
MGI|MGI:103292	217	Rab19 "RAB19, member RAS oncog	0.693	0.603	0.328	2.8e-20
ASPGD|ASPL0000062908	205	avaA [Emericella nidulans (tax	0.730	0.673	0.369	5.8e-20
SGD|S000004252	215	YPT6 "Rab family GTPase" [Sacc	0.671	0.590	0.333	7.3e-20
UNIPROTKB|O97572	207	RAB7A "Ras-related protein Rab	0.666	0.608	0.375	9.3e-20
POMBASE|SPBC1703.10	203	ypt1 "GTPase Ypt1" [Schizosacc	0.587	0.546	0.403	1.2e-19
RGD|1565263	217	Rab19 "RAB19, member RAS oncog	0.693	0.603	0.328	1.5e-19
UNIPROTKB|Q969Q5	203	RAB24 "Ras-related protein Rab	0.587	0.546	0.348	3.1e-19
UNIPROTKB|E2R4M1	203	RAB24 "Uncharacterized protein	0.587	0.546	0.348	3.9e-19
UNIPROTKB|F1S3C2	203	RAB24 "Uncharacterized protein	0.587	0.546	0.348	3.9e-19

FB|FBgn0035155 RabX6 "RabX6" [Drosophila melanogaster (taxid:7227)]

 Score = 504 (182.5 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 92/122 (75%), Positives = 114/122 (93%)

Query:     1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
             MA++++P+QKVILCG+YGVGKSSLFRR+A +TFI+ + RKSTLGLD+ ++EY V+++ I+
Sbjct:     1 MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIK 60

Query:    61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
             +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct:    61 LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query:   121 GN 122
             GN
Sbjct:   121 GN 122

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

MGI|MGI:103292 Rab19 "RAB19, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 44/134 (32%), Positives = 73/134 (54%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             KVIL G+  VGK+ + + +    +  S S+++T+G+D   +  ++D + ++MQ+WDT G 
Sbjct:    19 KVILIGDSNVGKTCVVQHFKSGVY--SESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQ 76

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNNEQCHN 128
             ER  +IT SYY+ A AAI+ + L   ++F  +   + EI  Y A N  I L GN      
Sbjct:    77 ERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWE 136

Query:   129 LISSTYKTSCKTGE 142
                  ++ +C   E
Sbjct:   137 KRHVLFEDACTLAE 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000062908 avaA [Emericella nidulans (taxid:162425)]

 Score = 214 (80.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 55/149 (36%), Positives = 81/149 (54%)

Query:     1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
             M+S K    KVI+ G+ GVGK+SL  +Y    F  S S K+T+G D   KE  VDDR + 
Sbjct:     1 MSSRKKVMLKVIILGDSGVGKTSLMNQYVNKKF--SGSYKATIGADFLTKEVLVDDRLVT 58

Query:    61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 115
             MQ+WDT G ER  S+  ++Y+ A+  +LV+ ++N+ SF  L     E +  A     E+ 
Sbjct:    59 MQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFEALDSWRDEFLIQASPRDPESF 118

Query:   116 KIFLCGNN---EQCHNLISSTYK-TSCKT 140
                + GN    E+   +ISS    T C++
Sbjct:   119 PFVVIGNKIDMEESKRMISSKRAMTFCQS 147

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0007032 "endosome organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030906 "retromer complex, inner shell" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0072665 "protein localization to vacuole" evidence=IEA

GO:0061191 "positive regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0007035 "vacuolar acidification" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0031321 "ascospore-type prospore assembly" evidence=IEA

GO:0000011 "vacuole inheritance" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0051469 "vesicle fusion with vacuole" evidence=IEA

SGD|S000004252 YPT6 "Rab family GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 212 (79.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 45/135 (33%), Positives = 75/135 (55%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             K++  GE GVGK+SL  R+ YDTF      ++T+G+D  +K   +DD++I++QLWDT G 
Sbjct:    12 KIVFLGEQGVGKTSLITRFMYDTF--DDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQ 69

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNNEQCH 127
             ER  S+  SY + +  AI+V+ +    SF  + + + ++     +  + LC  GN     
Sbjct:    70 ERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSD-- 127

Query:   128 NLISSTYKTSCKTGE 142
               +S   + S + GE
Sbjct:   128 --LSDERQISTEEGE 140

GO:0006886 "intracellular protein transport" evidence=IGI;TAS

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;TAS

GO:0003924 "GTPase activity" evidence=ISS;IDA;TAS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|O97572 RAB7A "Ras-related protein Rab-7a" [Oryctolagus cuniculus (taxid:9986)]

 Score = 207 (77.9 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
 Identities = 50/133 (37%), Positives = 70/133 (52%)

Query:     1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
             M S K    KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + 
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVT 58

Query:    61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 115
             MQ+WDT G ER  S++ ++Y+ A+  +LVF +    +F  L    LE +  A     EN 
Sbjct:    59 MQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENF 118

Query:   116 KIFLCGNNEQCHN 128
                + GN     N
Sbjct:   119 PFVVLGNKIDLEN 131

GO:0005770 "late endosome" evidence=ISS

GO:0045022 "early endosome to late endosome transport" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0090383 "phagosome acidification" evidence=ISS

GO:0090385 "phagosome-lysosome fusion" evidence=ISS

POMBASE|SPBC1703.10 ypt1 "GTPase Ypt1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 212 (79.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 46/114 (40%), Positives = 73/114 (64%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   + ++++ +++++Q+WDT G 
Sbjct:    10 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
             ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA E     L GN
Sbjct:    68 ERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGN 121

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003924 "GTPase activity" evidence=IGI

GO:0005525 "GTP binding" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IC

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IMP

RGD|1565263 Rab19 "RAB19, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 44/134 (32%), Positives = 73/134 (54%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             KVIL G+  VGK+ + + +    +  S S+++T+G+D   +  ++D + ++MQ+WDT G 
Sbjct:    19 KVILIGDSNVGKTCVVQHFKSGVY--SESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQ 76

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNNEQCHN 128
             ER  +IT SYY+ A AAI+ + L   ++F  +   + EI  Y A N  I L GN      
Sbjct:    77 ERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWE 136

Query:   129 LISSTYKTSCKTGE 142
                  ++ +C   E
Sbjct:   137 KRHVLFEDACTLAE 150

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q969Q5 RAB24 "Ras-related protein Rab-24" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 39/112 (34%), Positives = 67/112 (59%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             KV++ G+  VGK+SL  RY +D F+    + +T+G     K   V DR++ + +WDT G 
Sbjct:     9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFVAKVMSVGDRTVTLGIWDTAGS 67

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
             ER  +++  YY+ A+AAI+ + L +++SF      + E+ +  E  +I+LCG
Sbjct:    68 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCG 119

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2R4M1 RAB24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 39/112 (34%), Positives = 66/112 (58%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             KV++ G+  VGK+SL  RY +D F+    + +T+G     K   V DR++ + +WDT G 
Sbjct:     9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFVAKVMSVGDRTVTLGIWDTAGS 67

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
             ER  +++  YY+ A+AAI+ + L +++SF      + E+    E  +I+LCG
Sbjct:    68 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEGCQIYLCG 119

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1S3C2 RAB24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 39/112 (34%), Positives = 66/112 (58%)

Query:    10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
             KV++ G+  VGK+SL  RY +D F+    + +T+G     K   V DR++ + +WDT G 
Sbjct:     9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFVAKVMSVGDRTVTLGIWDTAGS 67

Query:    70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
             ER  +++  YY+ A+AAI+ + L +++SF      + E+    E  +I+LCG
Sbjct:    68 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEGCQIYLCG 119

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TVU5	RAB1_THEPA	No assigned EC number	0.3652	0.7407	0.6363	yes	N/A
O97572	RAB7A_RABIT	No assigned EC number	0.3352	0.8095	0.7391	yes	N/A
P11620	YPT1_SCHPO	No assigned EC number	0.3456	0.7619	0.7093	yes	N/A
Q4UB16	RAB1_THEAN	No assigned EC number	0.3652	0.7407	0.6363	yes	N/A
Q54NU2	RAB1D_DICDI	No assigned EC number	0.3550	0.7777	0.7205	yes	N/A
Q99260	YPT6_YEAST	No assigned EC number	0.3109	0.7619	0.6697	yes	N/A
Q9FPJ4	RAD2B_ARATH	No assigned EC number	0.3210	0.8783	0.8217	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	7e-44
pfam00071	162	pfam00071, Ras, Ras family	3e-35
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-33
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-28
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-27
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-25
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-25
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	8e-25
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-24
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-23
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-22
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-22
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-22
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-22
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-20
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-20
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-20
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-19
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-19
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-18
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-18
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-18
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-18
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-18
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-18
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-17
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-16
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-16
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-16
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-16
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-15
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-15
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-14
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-14
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-14
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	6e-14
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-14
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-13
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	7e-13
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-12
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-12
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-12
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-12
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-12
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-11
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-11
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-10
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-10
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-09
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-09
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-09
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-09
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-08
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-08
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-08
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-08
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-08
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	9e-08
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-07
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-07
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-07
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	7e-07
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-06
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-06
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-06
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-06
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-06
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-06
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-05
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-05
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-05
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-05
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-04
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	5e-04
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	0.001
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.002
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	0.002
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.003
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	0.003
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	0.004
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	0.004

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  142 bits (362), Expect = 7e-44
 Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 18/155 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+SL  R+  + F  S + KST+G+D  +K  +VD + +++Q+WDT G 
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKF--SENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  SITSSYY+ A  AILV+ + N  SF  L + L E+  YA  N  I L GN      
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 123 ---------NEQCHNLISSTYKTSCKTGEGVEEMF 148
                     +         ++TS KTGE V+E F
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAF 154

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  121 bits (305), Expect = 3e-35
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 22/165 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKSSL  R+  + F        T+G+D + K  +VD +++++Q+WDT G 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEY--IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN-----N 123
           ER  ++   YY+ A+  +LV+ + +  SF  + + L EI+ +A EN  I L GN     +
Sbjct: 59  ERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLED 118

Query: 124 EQC------------HNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
           ++               L     +TS KT E VEE F ++ R+++
Sbjct: 119 QRVVSTEEGEALAKELGLP--FMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  116 bits (293), Expect = 2e-33
 Identities = 64/163 (39%), Positives = 87/163 (53%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+IL G+ GVGKSSL  R+    F  S   KST+G+D   K  +VD + +++Q+WDT G 
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN----NE 124
           ER  SITSSYY+ A  A+LV+ + N  SF  L   L E+  YA  N  I L GN     E
Sbjct: 60  ERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 125 Q-----------CHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
           Q                   ++TS KT   VEE F ++ R+++
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  102 bits (256), Expect = 5e-28
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKSSL  R+  DTF    S  ST+G+D   K   VD + +++ +WDT G 
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLS--STIGVDFKVKTVTVDGKKVKLAIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNN-EQC 126
           ER  ++TSSYY+ A+  ILV+ +    +F  L   L E+ TY+   +A   L GN  ++ 
Sbjct: 60  ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 127 HNLISST-------------YKTSCKTGEGVEEMFADIGRQL 155
           +  ++                +TS KT  GV++ F ++  ++
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  101 bits (254), Expect = 1e-27
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F  +   +ST     F K   +  + I + +WDT G 
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKF--NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
           ER  ++   YY+ A+ AILV+ + +A SF  + + + E+      N  + + GN      
Sbjct: 60  ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     E   ++ +  ++TS KTG+G+EE+F  + +++I
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  100 bits (250), Expect = 6e-27
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D +++++Q+WDT G 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN     +
Sbjct: 62  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
                Y                TS K    VEE F  + R++ 
Sbjct: 122 KKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIK 164

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 96.5 bits (241), Expect = 9e-26
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            K++  G+  VGK+S+  R+ YDTF   +  ++T+G+D  +K   VDD+++++QLWDT G
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTF--DNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAG 58

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFLCGNN---- 123
            ER  S+  SY + +  A++V+ + N  SF    + + ++     N   I L GN     
Sbjct: 59  QERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118

Query: 124 -------EQCHNLISS----TYKTSCKTGEGVEEMFADI 151
                  E+             +TS K G  V+++F  I
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 96.0 bits (239), Expect = 2e-25
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++  + F   S+   T+G++  ++   V  +S+++Q+WDT G 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNH--TIGVEFGSRVVNVGGKSVKLQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGN------ 122
           ER  S+T SYY+ A  A+LV+ + +  SF+ L+  L +  T A  +  I L GN      
Sbjct: 60  ERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED 119

Query: 123 NEQCHNLISSTY---------KTSCKTGEGVEEMFADIGRQL 155
           + +   L +S +         +TS  TGE VEE F    R +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 94.2 bits (235), Expect = 7e-25
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           + K++L G+  VGKSS+  R+  + F  S +++ST+G     +   +DD +++ ++WDT 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEF--SENQESTIGAAFLTQTVNLDDTTVKFEIWDTA 58

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN---- 122
           G ER  S+   YY+ A AAI+V+ + +  SF      + E+  +   N  I L GN    
Sbjct: 59  GQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADL 118

Query: 123 -------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                   E+             +TS KTGE V E+F +I R+L 
Sbjct: 119 ESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 94.7 bits (236), Expect = 8e-25
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 23/165 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + +Q+WDT G 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LV+ + N  SF  L     E +  A     EN    + GN  
Sbjct: 60  ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 125 QC--HNLISST--------------YKTSCKTGEGVEEMFADIGR 153
                  +S+               ++TS K    V++ F  I R
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 22/160 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS+L  R+  + F   S  KST+G++   +  ++D ++I+ Q+WDT G 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNE---- 124
           ER  +ITS+YY+ A  A+LV+ +   ++F  + + L E+  +A+ N  I L GN      
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122

Query: 125 -------------QCHNLISSTYKTSCKTGEGVEEMFADI 151
                        + + L  S  +TS   G  VEE F  +
Sbjct: 123 LRAVPTEEAKAFAEKNGL--SFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 89.2 bits (222), Expect = 7e-23
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 18/160 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R++ D+F  + S  ST+G+D   +  ++D + I++Q+WDT G 
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSF--NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
           ER  +IT+SYY+ A   ILV+ + +  SF  +   +  I  +A E+ +  L GN      
Sbjct: 63  ERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEE 122

Query: 124 ------EQCHNLISST----YKTSCKTGEGVEEMFADIGR 153
                 E+   L         +TS K    VEE F  + +
Sbjct: 123 KRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 89.2 bits (221), Expect = 1e-22
 Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGK+ L RR+    F       +T+G+D   K  ++    I++Q+WDT G 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNN----- 123
           ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L GN      
Sbjct: 67  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126

Query: 124 ---------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
                    E+  +     Y +TS K  + VE++F D+  +LI
Sbjct: 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGK+ L  R+    F++ S   +T+G+   NK   VD   +++Q+WDT G 
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSF-IATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T +YY+ A A +L++ + N +SF  +   L EI+ YA  +  I L GN      
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 L----------ISSTY-----KTSCKTGEGVEEMFADIGRQL 155
                      ++  Y     +TS KTG  VE  F  + ++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 87.6 bits (218), Expect = 3e-22
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 20/163 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G  GVGKS+L  R+    F+       T+  D++ K+  VD  +  + + DT G 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDP--TIE-DSYRKQIVVDGETYTLDILDTAGQ 57

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN---- 123
           E  +++   Y +  +  ILV+S+ +  SF  +     +I  V   E+  I L GN     
Sbjct: 58  EEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLE 117

Query: 124 ----------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQL 155
                     E         + +TS KT   ++E+F  + R++
Sbjct: 118 NERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 87.6 bits (217), Expect = 6e-22
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 17/163 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+ GVGKSSL  R+A +TF  S S  +T+G+D   +  +++   +++Q+WDT G 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN-NEQ--- 125
           ER  +ITS+YY+     I+V+ + N  SF  + + L EI    ++    L GN N+    
Sbjct: 66  ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125

Query: 126 -----------CHNLISSTYKTSCKTGEGVEEMFADIGRQLIL 157
                         +  S ++TS K    VEEMF  I   ++ 
Sbjct: 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQC 126
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN   C
Sbjct: 60  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 117

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 82.9 bits (205), Expect = 2e-20
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+IL G+  VGK+ + +R+   TF  S  + +T+G+D   K  ++  + +++Q+WDT G 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTF--SERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNN----- 123
           ER  +IT SYY+ A  AI+ + +   +SF  +   + E+  Y A N  + L GN      
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122

Query: 124 -------EQC----HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                  E C    H  I +  +TS K    VEE F  +  +L
Sbjct: 123 QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 83.0 bits (205), Expect = 2e-20
 Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F +      T+G++  NK+ +VD   + +Q+WDT G 
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 108

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA D+F  +S+  ST+G+D   K    +D+ I++Q+WDT G 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 114

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 27/174 (15%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGG 68
           KV++ G+ GVGK+S+ +RY +  F  S   K+T+G+D   K  + D    +++QLWD  G
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVF--SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAG 59

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI--FLCGN- 122
            ER   +T  YYK A  AI+VF +   ++F  +      L   VT      I   L  N 
Sbjct: 60  QERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 123 ---------------NEQC--HNLISSTYKTSCKTGEGVEEMFADIGRQLILSN 159
                          ++ C  +  I    +TS K    +EE    + + ++ ++
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWF-ETSAKENINIEEAMRFLVKNILKND 172

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 20/161 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV++ G+  VGK+SL  RY +  F+     ++T+G     K   V +R + + +WDT G 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPY-QNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
           ER  +++  YY+ A+AAI+ + L +++SF      + E+    E+ KI+LCG        
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120

Query: 123 ------------NEQCHNLISSTYKTSCKTGEGVEEMFADI 151
                        +    + +  ++TS KTG+ V+E+F  +
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS--IQMQLWDTG 67
          KVI+ G   VGKSS+ +R+    F  +   K T+G+D   K+  +      +++ LWDT 
Sbjct: 2  KVIVVGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTA 59

Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASF 98
          G E   +IT +YY+ A+A ILVFS  +  SF
Sbjct: 60 GQEEFDAITKAYYRGAQACILVFSTTDRESF 90

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 77.2 bits (190), Expect = 3e-18
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F++      T+G++   +  +V+ + I++Q+WDT G 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  IFL GN      
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
               TY               + S KTGE VE+ F +  +++
Sbjct: 122 QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 76.6 bits (189), Expect = 6e-18
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI  G  GVGKS + +RY    F+S      T+G+D   K+  V ++ +++  +D  G 
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY------AENAKIFLCGNN 123
                + + +YK  +  +LV+ + +  SF  L   L E+          EN  + +C N 
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 124 EQC--HNLISST-------------YKTSCKTGEGVEEMFADIGRQLI 156
                H  +S               ++TS  TGEGV EMF  +   ++
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 77.7 bits (191), Expect = 7e-18
 Identities = 42/123 (34%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS++  R+  + F   S  KST+G++   +  +V+ ++++ Q+WDT G 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLES--KSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    +F  + + L E+  +A+ N  I + GN    ++
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131

Query: 129 LIS 131
           L S
Sbjct: 132 LRS 134

Length = 216

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (187), Expect = 8e-18
 Identities = 38/161 (23%), Positives = 56/161 (34%), Gaps = 25/161 (15%)

Query: 13  LCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71
           + G  GVGKSSL            S    +T   D + KE       +   L DT G++ 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKL--VLVDTPGLDE 59

Query: 72  V-----ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN---- 122
                   +     + A+  +LV    +  S       +L  +   E   I L GN    
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRL-RKEGIPIILVGNKIDL 118

Query: 123 ------------NEQCHNLISSTYKTSCKTGEGVEEMFADI 151
                        E    L    ++ S KTGEGV+E+F  +
Sbjct: 119 LEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
            + E K+++ G+ GVGK++L  R   D F        T+G  +  K  +   R+I++QLW
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEF--PEGYPPTIGNLDPAKTIEPYRRNIKLQLW 59

Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGN 122
           DT G E   S+   YY+ A   ++V+      S   L++  LE +     ++  I L GN
Sbjct: 60  DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGN 119

Length = 219

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+IL G+  VGKS L  R+  D +     + ST  L  +    K + ++I +  WDT G 
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQ--QLSTYALTLYKHNAKFEGKTILVDFWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           ER  ++ +SYY  A A ILVF +    ++  LS+   E+  Y       +  N       
Sbjct: 60  ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS 119

Query: 124 --------EQCHNLISSTYKTSCKTGEGVEEMFAD 150
                    + HNL    Y  S   G  V ++F D
Sbjct: 120 VTQKKFNFAEKHNL--PLYYVSAADGTNVVKLFQD 152

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 31/172 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+  VGK+ L   Y  + F   +    T+  DN++    VD + + + LWDT G 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKF--PTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
           E    +    Y   +  +L FS+D+ +SF +V ++   EI  Y  N  I L G       
Sbjct: 59  EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRD 118

Query: 123 -------NEQCHNLISST--------------YKTSCKTGEGVEEMFADIGR 153
                   E+    I+                 + S  T EG++E+F +  R
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 22/164 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D + I++Q+WDT G 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L GN      
Sbjct: 64  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123

Query: 124 ---------EQC---HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                    E     H LI    +TS KT   VEE F +  +++
Sbjct: 124 RREVSYEEGEAFAREHGLI--FMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 71.7 bits (176), Expect = 8e-16
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 25/190 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGG 68
           ++I+ G+  VGKSSL +R+    F   S    T+G+D F++  +++    I++QLWDT G
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQC 126
            ER  SIT SYY+ +   +LVF + N  SF  +   L E  ++ +  +    L G+    
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 HNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAG 171
            +    T                +TS +TG+ VEE F  + ++ I     R EL      
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE-IYERIKRGELCA---- 176

Query: 172 GIGTDSFKLG 181
             G D  K G
Sbjct: 177 LDGWDGVKSG 186

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 69.5 bits (170), Expect = 4e-15
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE--YKVDDRS--------I 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K   Y              +
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRV 63

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENA 115
            +QLWDT G ER  S+T+++++ A   +L+F L +  SF    + +SQ  L+   Y EN 
Sbjct: 64  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQ--LQAHAYCENP 121

Query: 116 KIFLCGN---------------NEQCHNLISSTYKTSCKTGEGVEE 146
            I L GN                E         ++TS  TG+ VE+
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 68.5 bits (167), Expect = 8e-15
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 11/118 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +++L G+ GVGK+ L  R+  + F   SS  ST+G+D   K  +VD   +++Q+WDT G 
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEF--HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YA-ENAKIFLCGN 122
           ER  +IT  YY+ A+   LV+ + +  S+    QH+++ V+    YA E  +  L GN
Sbjct: 60  ERYQTITKQYYRRAQGIFLVYDISSERSY----QHIMKWVSDVDEYAPEGVQKILIGN 113

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+  VGK+ L  R+  D F    + K+T+G+D   + ++V      +QLWDT G 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNE--- 124
           ER   I S+YY+ A+A I+VF L + AS     Q L + +   +  +  +FL G  +   
Sbjct: 60  ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119

Query: 125 ---QCH-----------NLISSTYKTSCKTGEGVEEMF 148
              Q              + +  +  S  TGE V + F
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 20/163 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQLNILDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN----- 122
           E  A+I  +Y++  E  +LVFS+ +  SF  L++   +I  V   +N  + L GN     
Sbjct: 59  EDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE 118

Query: 123 -NEQ---------CHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
              Q               +  +TS KT   V+++F D+ R++
Sbjct: 119 DKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 67.3 bits (164), Expect = 5e-14
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D++ I++Q+WDT G 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNN-EQCH 127
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   +A  N  I L GN  +  H
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125

Query: 128 NLISST--------------YKTSCKTGEGVEEMF 148
               ST               + S KT + VEE F
Sbjct: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160

Length = 210

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 66.3 bits (161), Expect = 6e-14
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 18/142 (12%)

Query: 30  YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89
           YDTF   ++ +ST+G+D  +K   +D+  +++QLWDT G ER  S+  SY + + AAI+V
Sbjct: 2   YDTF--DNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVV 59

Query: 90  FSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNNEQCHNLISSTY-------------- 134
           + + N  SF   ++ + +I+    ++  I L GN     +L   TY              
Sbjct: 60  YDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMF 119

Query: 135 -KTSCKTGEGVEEMFADIGRQL 155
            +TS K G  ++ +F  I  +L
Sbjct: 120 HETSAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 65.9 bits (161), Expect = 7e-14
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+I+ G+  VGK+ L  R+    F   +  ++T+G+D   +  ++D   I++QLWDT G 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 70  ERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQC 126
           ER   S+   YY+   A + V+ + N ASFH L   + E   ++   ++   L GN  +C
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGN--KC 119

Query: 127 HNLISSTYKTSCKTGEGVEEMFAD 150
                    T       + + FAD
Sbjct: 120 DLREQIQVPT------DLAQRFAD 137

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 7/95 (7%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRK--STLGLDNFNKEYKVDDRSIQMQLWDTG 67
           K++L G+ GVGKSSL       +FISSS      T+G+D   K+  V  + +++ +WDT 
Sbjct: 16  KILLIGDSGVGKSSLLV-----SFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLS 102
           G ER  ++TSSYY+ A+  ILV+ +    +F  LS
Sbjct: 71  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLS 105

Length = 211

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 62.9 bits (153), Expect = 7e-13
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 20/165 (12%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KV++ G  GVGKS+L  ++   TFI       T+  D + KE +VD     +++ DT 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYD--PTIE-DFYRKEIEVDSSPSVLEILDTA 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--N 123
           G E+ AS+   Y K  +  I+V+SL N  +F  +     +I  V   E   I L GN  +
Sbjct: 58  GTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD 117

Query: 124 EQCHNLISST-------------YKTSCKTGEGVEEMFADIGRQL 155
            +    +SS               +TS K+   V E+FA+I RQ+
Sbjct: 118 LESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV++ G+ G GKSSL  +     F           L     E   D   +   +WD GG 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLL--NIWDFGGR 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV---TYAENAKIFLCGN 122
           E +      + K+A+A +LV+ L +  S + +S+ +  +           + L GN
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGN 114

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 21/167 (12%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           + K+++ G  GVGKS+L  ++  + FI S     T+  D++ K+ ++D R   +++ DT 
Sbjct: 1   DYKIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIE-DSYRKQVEIDGRQCDLEILDTA 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNEQ 125
           G E+  ++   Y K  +  +LV+S+ + AS + L +   +++    ++N  + L GN   
Sbjct: 58  GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 126 CHN----------LISST------YKTSCKTGEGVEEMFADIGRQLI 156
             +           +S        Y+TS +    V+E+F D+ RQ+I
Sbjct: 118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+ + G  GVGKS+L  R+    FI             ++++  +D   + +++ DT G 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE---SLYSRQVTIDGEQVSLEIQDTPGQ 57

Query: 70  ERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNN- 123
           ++           ++A+  +LV+S+ + +SF V+S   Q + EI        + L GN  
Sbjct: 58  QQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKA 117

Query: 124 EQCH 127
           +  H
Sbjct: 118 DLLH 121

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 34/164 (20%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE-YKVDDRSIQMQLWDTGG 68
           K+++ G+  VGKS+L  R   +  IS +  K      N+     + D ++ +  L DT G
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNK-ISITEYKPGTT-RNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLS------QHLLEIVTYAE-NAKIFLCG 121
            E   +I   YY+  E+++ VF +       VL       +   EI+ +AE    I L G
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVG 116

Query: 122 NNEQCHNLISSTYKT-----------------SCKTGEGVEEMF 148
           N  +  +L  +  KT                 S +TG+ ++  F
Sbjct: 117 N--KI-DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRK---STLGLDNFNKEYKVDDRSIQMQ 62
           VPE K+IL G+ GVGK++  +R+    F      K    TLG++    ++  +   I   
Sbjct: 7   VPEFKLILVGDGGVGKTTFVKRHLTGEF-----EKKYIPTLGVEVHPLKFYTNCGPICFN 61

Query: 63  LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           +WDT G E+   +   YY   + AI++F + +  ++ +V + H  +IV   EN  I L G
Sbjct: 62  VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWH-RDIVRVCENIPIVLVG 120

Query: 122 N 122
           N
Sbjct: 121 N 121

Length = 215

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE---DSYRKQIEVDCQQCMLEILDTA 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN-- 123
           G E+  ++   Y K  +   LV+S+    SF+ L     +I  V   E+  + L GN   
Sbjct: 58  GTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCD 117

Query: 124 ---------EQCHNLIS-----STYKTSCKTGEGVEEMFADIGRQLI 156
                    E+  NL          +TS K+   V+E+F D+ RQ+ 
Sbjct: 118 LEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQIN 164

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 58.7 bits (142), Expect = 6e-11
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGG 68
           K+++ G+   GK+SL RR+A + F    S K T+GLD F++   +    ++ +Q+WD GG
Sbjct: 2   KIVVLGDGASGKTSLIRRFAQEGF--GKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGG 59

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA----KIFLCGN-- 122
            +    +   Y   A+A  LV+ + N+ SF  L   L  +    E +    K+ L GN  
Sbjct: 60  QQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 123 ----NEQ---------CHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ 166
               N Q                +   S KTG+ V   F  I  +L+    S+ EL+
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELE 176

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +L G+  VGK+SL   Y  + +    +       DNF+    VD + +++QL DT G 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGY---PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCG 121
           +    +    Y   +  +L FS+ N +SF  +S+  + EI  +   A I L G
Sbjct: 59  DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVG 111

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 22/166 (13%)

Query: 7   PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
            E K+++ G  GVGKS+L  ++    F+       T+  D++ K+ ++D     + + DT
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYD--PTIE-DSYRKQIEIDGEVCLLDILDT 57

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKIFLCGNN 123
            G E  +++   Y +  E  +LV+S+ +  SF       + +L +    ++  I L GN 
Sbjct: 58  AGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDR-DDVPIVLVGNK 116

Query: 124 -----------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQ 154
                      E+   L         +TS K    V+E F D+ R+
Sbjct: 117 CDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVRE 162

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G  GVGKS+L  ++    F+       T+  D++ K+ ++D     + + DT G 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYD--PTIE-DSYRKQIEIDGEVCLLDILDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNN--- 123
           E  +++   Y +  E  +LV+S+ +  SF  +    + +L +    ++  I L GN    
Sbjct: 59  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDL 117

Query: 124 --------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQ 154
                   E+   L         +TS K    V+E F D+ R+
Sbjct: 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE 160

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+  VGK+SL  RY    F       ST+G   + K++        + +WDT G 
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF---KDTVSTVGGAFYLKQW----GPYNISIWDTAGR 54

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF 118
           E+   + S Y + A A IL + + N  S   L    L +   A    +F
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLF 103

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 19/164 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD--RSIQMQLWDTG 67
           +  + G+  VGKS+L + +  D      +   T G D   K   V D   S+++ ++D+ 
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGN--- 122
           G E  + +  + ++      +V+ + N  SF+  S+ +  + T++        L GN   
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 123 --------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQ 154
                     Q   L  +     Y+TS K G G E  F  + R 
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +L G+  VGK  +       +  + S     +G+D       +D R +++QLWDT G 
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGS--TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
            R  +I  SY + A+  ILV+ + N  SF  + + + EI  +A      L GN
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGN 118

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 38/170 (22%)

Query: 11  VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70
           +++ G+  VGK+ L   Y  + F        T+  +N++ + +VD + +++ LWDT G E
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAF--PEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQE 57

Query: 71  ---RVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG----- 121
              R+  +  SY    +  ++ FS+D+ ASF +V  +   E+  +  N  I L G     
Sbjct: 58  DYDRLRPL--SYPD-TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDL 114

Query: 122 -NNEQCHN------LISSTYK----------------TSCKTGEGVEEMF 148
            N++              TY+                 S  T EGV E+F
Sbjct: 115 RNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 20/166 (12%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+       T+  D++ K+ +VD +   +++ DT 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIE-DSYRKQVEVDGQQCMLEILDTA 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN-- 123
           G E+  ++   Y K  +  +LV+S+   ++F+ L     +I  V   E+  + L GN   
Sbjct: 58  GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117

Query: 124 ---------EQCHNLI----SSTYKTSCKTGEGVEEMFADIGRQLI 156
                    EQ  NL      +  +TS K    V E+F D+ RQ+ 
Sbjct: 118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +KV++ G+   GK+SL   +    F      + T+  +N+  +  VD  ++++ LWDT G
Sbjct: 1   RKVVVLGDGACGKTSLLNVFTRGYF--PQVYEPTV-FENYIHDIFVDGLAVELSLWDTAG 57

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
            E    + S  Y      +L FS+DN  S  +V S+ L EI  +    K+ L
Sbjct: 58  QEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVL 109

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)

Query: 15  GEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74
           G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G E+   
Sbjct: 2   GDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG 59

Query: 75  ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
           +   YY   + AI++F +    ++  +     ++V   EN  I LCGN
Sbjct: 60  LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGN 107

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ +   Y  +TF   +    T+  DNF+    VD  ++ + LWDT G 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN----E 124
           E    +    Y+ A+  +L FSL + AS+ +VL + + E+  YA    I L G      +
Sbjct: 60  EDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRD 119

Query: 125 QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
                          T +G EE+   IG    +   S+ +     
Sbjct: 120 DKQFFADHPGAVPITTAQG-EELRKQIGAAAYIECSSKTQQNVKA 163

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 15/159 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++    ++  +   I+  +WDT G 
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLDFHTNRGKIRFNVWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC--- 126
           E+   +   YY   + AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 119

Query: 127 ----------HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                            Y+ S K+    E+ F  + R+L
Sbjct: 120 KVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 30/162 (18%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS-IQMQLWDT 66
           E K++L G+ GVGK+SL ++   + F    S  ST G++  + +    +R  I++ +WD 
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQLIGEKFDGDES--STHGINVQDWKIPAPERKKIRLNVWDF 58

Query: 67  GGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
           GG E   +     +TS S Y      +LVF L        +   L +I  +   + + L 
Sbjct: 59  GGQEIYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILV 112

Query: 121 GN--NEQCHNLISST-------------YKTSCKTGEGVEEM 147
           G   +E C   I                +  SCK G+G+ E+
Sbjct: 113 GTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAEL 154

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 20/175 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V+L G+ GVGKSSL   +    +  S+   S  G D + +   VD     + ++D    
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEAS--GDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN---- 123
           E    +  S  +  +A ++V+S+ + +SF   S+  +++     AE+  I L GN     
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLV 119

Query: 124 ----------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLILSNRSRLELQT 167
                       C  +    + +TS      V+E+F  I RQ+ L  R   E  T
Sbjct: 120 RSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRL-RRDSKEKNT 173

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 33/171 (19%)

Query: 8   EQKVILCGEYGVGKSSLFRRY-------AYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           E K+++ G  GVGKS+L  +         YD  I  S RK  +          +D  +  
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----------IDGETCL 50

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 118
           + + DT G E  +++   Y +  E  + VF++++  SF  +  +  +I  V  +++  + 
Sbjct: 51  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110

Query: 119 LCGN----------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
           L GN            Q  +L  S      +TS KT +GVEE F  + R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F    +   T+  +N+   +++D + I++ LWDT G 
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCF--PENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 116

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
             ++  P  K+++ G+ G GK++  +R+    F      + T+G++    ++  +   I+
Sbjct: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIR 63

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 120
              WDT G E+   +   YY   + AI++F +    ++  +     ++    EN  I LC
Sbjct: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 123

Query: 121 GN 122
           GN
Sbjct: 124 GN 125

Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG- 68
           +++  G  GVGK++L +R+ YDTF     R++   L   +KEY+V    + + + DT G 
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTF-EPKHRRTVEELH--SKEYEVAGVKVTIDILDTSGS 57

Query: 69  ----MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA--KIFLCGN 122
                 R  SI +      +A  LV+S+D+  SF  + +   EI+   E+    I + GN
Sbjct: 58  YSFPAMRKLSIQNG-----DAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGN 112

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+SL   +    F        T+  +N+  + +VD + +Q+ LWDT G
Sbjct: 2   RKLVIVGDGACGKTSLLYVFTLGEF--PEEYHPTV-FENYVTDCRVDGKPVQLALWDTAG 58

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
            E    +    Y  A   ++ F++D   S  +V ++ + E+  Y  N  + L G
Sbjct: 59  QEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVG 112

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+   GK++L + +A D+F    +   T+  +N+   ++VD + I++ LWDT G 
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSF--PENYVPTV-FENYTASFEVDKQRIELSLWDTSGS 59

Query: 70  ERVASITSSYYKFAEAAILVF------SLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A ++ F      +LD+     VL +   E+  +  N  + L G
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDS-----VLKKWKGEVREFCPNTPVLLVG 112

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 36/172 (20%)

Query: 7   PEQKVILCGEYGVGKSSL----FRRY---AYDTFISSSSRKSTLGLDNFNKEYKVDDRSI 59
           P  K+++ G  GVGKS+L     + Y    YD  I           D++ K+ ++D +  
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE----------DSYTKQCEIDGQWA 50

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAK 116
           ++ + DT G E  +++   Y +  E  +LVFS+ +  SF         +L  V   +   
Sbjct: 51  RLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILR-VKDRDEFP 109

Query: 117 IFLCGNN---------------EQCHNLISSTYKTSCKTGEGVEEMFADIGR 153
           + L GN                E    L     +TS K    V++ F D+ R
Sbjct: 110 MILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F        T+  DN++    VD + + + LWDT G 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 112

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D +    S   T+  +N+   +++D   I++ +WDT G 
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNY--PESYVPTV-FENYTASFEIDKHRIELNMWDTSGS 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A ++ F +    +   VL +   E   +  NAK+ L G
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVG 112

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F        T+  DN++ +  VD R++ + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128
           E    + +  Y      I+ FS+ + +S+ +V  +   E+  +  N  I L G  +   N
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 43/172 (25%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFN-KEYKVDDRSIQMQLWDTGG 68
           ++++ G   VGK+++  R+    F      + T  +++F+ K Y +     Q+ + DT G
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRF----EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSG 57

Query: 69  ------MERVASITSSYYKFAEAAILVFSLDNAASFH---VLSQHLLEIVTYA-----EN 114
                 M R++ +T   +      ILVFSLDN  SF     L + +LE  +       EN
Sbjct: 58  NHPFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKEN 111

Query: 115 AKI--FLCGNN--------------EQC--HNLISSTYKTSCKTGEGVEEMF 148
            KI   +CGN               EQ    +   + ++ S K    ++EMF
Sbjct: 112 VKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 22/165 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+ GVGK++L  +   + F+ +     T+  D++ K+  VD +   +++ DT G 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYD--PTIE-DSYRKQVVVDGQPCMLEVLDTAGQ 57

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV----TYAENAKIFLCGN--- 122
           E   ++   + +  E  ILV+S+ + ++F  + +   +I       A +  I + GN   
Sbjct: 58  EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD 117

Query: 123 --NEQ----------CHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
              E+             L     + S KT   VE  F  + R L
Sbjct: 118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + +++ LWDT G
Sbjct: 2   KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 58

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
            E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   
Sbjct: 59  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118

Query: 128 N---LISSTYKT-------------------------SCKTGEGVEEMF 148
           N    I    K                          S KT EGV E+F
Sbjct: 119 NDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 27/157 (17%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           ++++ G  G GK+++  +      +++     T+G   FN E  V+ ++++  +WD GG 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT---IPTIG---FNVE-TVEYKNVKFTVWDVGGQ 53

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA---------KIFLC 120
           +++  +   YY+  +  I V    +          L +++   E           K  L 
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLP 113

Query: 121 GNN-----------EQCHNLISSTYKTSCKTGEGVEE 146
           G             E            S  TG+G++E
Sbjct: 114 GALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDE 150

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+   GK+++ +  A D +    +   T+  +N+    + +++ +++ LWDT G 
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQRVELSLWDTSGS 71

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A +L F +     F   L +   EI+ Y  + +I L G
Sbjct: 72  PYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIG 124

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++  + FI           D++ K+  +D+ +  + + DT 
Sbjct: 5   EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE---DSYRKQCVIDEETCLLDILDTA 61

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK--IFLCGNNEQ 125
           G E  +++   Y +  +  + V+S+ + +SF  ++    +I+   +  +  + L GN   
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121

Query: 126 CHNLISSTYKTSCKTGEGVE 145
             +    +      TGEG E
Sbjct: 122 LDSERQVS------TGEGQE 135

Length = 189

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E KVI+ G    GK+++  ++     + +S    T+G    N E ++  ++I+  +WD G
Sbjct: 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSP---TIG---SNVE-EIVYKNIRFLMWDIG 67

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G E + S  ++YY   +A ILV
Sbjct: 68 GQESLRSSWNTYYTNTDAVILV 89

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 20  GKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY 79
           GKS+L  RY   +++   S +       F KE  VD +S  + + D GG     +  + +
Sbjct: 12  GKSALVHRYLTGSYVQLESPEG----GRFKKEVLVDGQSHLLLIRDEGG-----APDAQF 62

Query: 80  YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQ------------ 125
             + +A I VFSL++ ASF  + +   ++ +Y   ++I   L G  +             
Sbjct: 63  AGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISASNPRVIDDA 122

Query: 126 -----CHNLISSTYKTSCKT-GEGVEEMFADIGRQL 155
                C ++   +Y  +C T G  VE +F +  +++
Sbjct: 123 RARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   YA D F            D++     V  +   + L+DT G 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FS+ N ASF +V  + + E+  YA N    L G
Sbjct: 59  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIG 111

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
          +V+L G    GKS+L  +  +   +++     T+G   FN E    ++ + + +WD GG 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIP---TVG---FNVEMLQLEKHLSLTVWDVGGQ 54

Query: 70 ERVASITSSYYKFAEAAILVFSLD 93
          E++ ++   Y        LV+ +D
Sbjct: 55 EKMRTVWKCY--LENTDGLVYVVD 76

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV---DDRSIQMQLWDT 66
           KV++ G+ GVGKSSL      +  + + S      +D  +  Y     ++++  ++LWD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 67  GG----MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI 108
           GG     E V S  + +Y      I V  L N  S   L +  LE 
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA 107

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS++  ++   +F        T+  D +  + ++D+    + + DT 
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDY--HDPTIE-DAYKTQARIDNEPALLDILDTA 58

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH--LLEIVTYAENAKIFLCGN 122
           G     ++   Y +  E  I+ +S+ +  SF   S+   L+  V   E+  + L GN
Sbjct: 59  GQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGN 115

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 26/125 (20%)

Query: 10  KVILCGEYGVGKSSL----FRRY-AYDTF---ISSSSRKSTLGLDNFNKEYKVDDRSIQM 61
           KV+L G  G GKSS+    F  Y   DT     +    +S +               + +
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGN----------LTL 50

Query: 62  QLWDTGGMERVASITSSYYK---FAEAAILVFSLD-NAASFHVLSQHLLEIVTYA----E 113
            LWD  G +       +  K   F+   +L++  D  +  +      L++I+        
Sbjct: 51  NLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSP 110

Query: 114 NAKIF 118
           NAK+F
Sbjct: 111 NAKVF 115

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 32/170 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V+  G  G GK+++  +   D F+       T+G +    EYK    +++  +WD GG 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIP---TIGFNVETVEYK----NLKFTIWDVGGK 53

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH--LLEIVTYAE--NAKIFLCGNNEQ 125
            ++  +   YY   +A  +VF +D++    V   H  L +++T  E  +A + +  N + 
Sbjct: 54  HKLRPLWKHYYLNTQA--VVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111

Query: 126 CHNLIS--------STYKTSC-----------KTGEGVEEMFADIGRQLI 156
               +S        S +K  C           ++G G+ E    + RQL+
Sbjct: 112 VAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 11  VILCGEYGVGKSSLFRRYAYDTFISS-SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           V+L G    GK++LF +       S+ +S +      N    Y    +  ++ L D  G 
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEP-----NVASFYSNSSKGKKLTLVDVPGH 57

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHV----LSQHLLEIVTYAENAK----IFLCG 121
           E++      Y K +  AI VF +D +A+F      +++ L +I+T  E  K    I +  
Sbjct: 58  EKLRDKLLEYLKASLKAI-VFVVD-SATFQKNIRDVAEFLYDILTDLEKIKNKIPILIAC 115

Query: 122 N 122
           N
Sbjct: 116 N 116

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
          K+ L G+  +GK+SL  +Y    F        TLG++   K   +    I   +WD GG 
Sbjct: 2  KIGLLGDAQIGKTSLMVKYVEGEF--DEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ 59

Query: 70 ER 71
            
Sbjct: 60 RE 61

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKS---TLGLDNFNKEYKVDDRSIQMQLWDT 66
           +++L G+ GVGKSSL      + F  +  R     T+  D         +R +   + DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP------ER-VPTTIVDT 56

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGN 122
               +  +  ++  + A    LV+S+D  ++   +    L  I        I L GN
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 33/131 (25%)

Query: 7   PEQKVILCGEYGVGKSSLFRRYA---------------YDTFISSSSRKSTLGLDNFNKE 51
            + K+++ G+ G GK+ L   YA               Y T +   + K           
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGK----------- 50

Query: 52  YKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVT 110
                  I++ LWDT G E    +    Y   +  ++ +S+DN  S   V  +   E+  
Sbjct: 51  ------IIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNH 104

Query: 111 YAENAKIFLCG 121
           +     I L G
Sbjct: 105 FCPGTPIVLVG 115

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		100.0
KOG0394|consensus	210		100.0
KOG0094|consensus	221		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098|consensus	216		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0087|consensus	222		100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0080|consensus	209		100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0093|consensus	193		100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0079|consensus	198		100.0
KOG0086|consensus	214		100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
PLN03108	210	Rab family protein; Provisional	99.98
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.98
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.98
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.98
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.98
KOG0095|consensus	213		99.98
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.98
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.98
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.98
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.98
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.98
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.98
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.98
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
PLN03118	211	Rab family protein; Provisional	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
KOG0088|consensus	218		99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
KOG0081|consensus	219		99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
KOG0091|consensus	213		99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
KOG0097|consensus	215		99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
KOG0083|consensus	192		99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0395|consensus	196		99.96
KOG0393|consensus	198		99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG4252|consensus	246		99.94
KOG0073|consensus	185		99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
KOG0070|consensus	181		99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
PTZ00099	176	rab6; Provisional	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
KOG0075|consensus	186		99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
KOG0096|consensus	216		99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.9
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.88
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.88
KOG0071|consensus	180		99.88
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
PRK04213	201	GTP-binding protein; Provisional	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
PRK15494	339	era GTPase Era; Provisional	99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.86
cd00881	189	GTP_translation_factor GTP translation factor fami	99.86
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.86
KOG1673|consensus	205		99.86
KOG0076|consensus	197		99.86
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.85
PRK12297	424	obgE GTPase CgtA; Reviewed	99.85
KOG3883|consensus	198		99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
PRK00089	292	era GTPase Era; Reviewed	99.83
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.82
PRK12298	390	obgE GTPase CgtA; Reviewed	99.82
KOG0072|consensus	182		99.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.81
KOG4423|consensus	229		99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.8
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.8
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.8
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.8
KOG1707|consensus	625		99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.79
COG2229	187	Predicted GTPase [General function prediction only	99.78
PRK12317	425	elongation factor 1-alpha; Reviewed	99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.78
PRK10218	607	GTP-binding protein; Provisional	99.77
KOG0074|consensus	185		99.77
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.77
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.77
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.76
COG0486	454	ThdF Predicted GTPase [General function prediction	99.75
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.75
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.75
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.74
COG1159	298	Era GTPase [General function prediction only]	99.74
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.72
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.72
KOG1423|consensus	379		99.72
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.7
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.7
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.69
COG1160	444	Predicted GTPases [General function prediction onl	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
COG2262	411	HflX GTPases [General function prediction only]	99.67
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
PRK12736	394	elongation factor Tu; Reviewed	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.65
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.65
PRK12735	396	elongation factor Tu; Reviewed	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.64
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.64
KOG0077|consensus	193		99.64
CHL00071	409	tufA elongation factor Tu	99.63
KOG1489|consensus	366		99.63
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.63
COG3596	296	Predicted GTPase [General function prediction only	99.62
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.61
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.61
COG1084	346	Predicted GTPase [General function prediction only	99.6
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.6
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
PLN03126	478	Elongation factor Tu; Provisional	99.59
PTZ00141	446	elongation factor 1- alpha; Provisional	99.59
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.59
PRK00049	396	elongation factor Tu; Reviewed	99.58
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.56
PLN03127	447	Elongation factor Tu; Provisional	99.56
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.55
COG0536	369	Obg Predicted GTPase [General function prediction	99.54
KOG0462|consensus	650		99.54
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.54
KOG1191|consensus	531		99.52
COG1163	365	DRG Predicted GTPase [General function prediction	99.52
KOG1145|consensus	683		99.52
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.51
PRK09602	396	translation-associated GTPase; Reviewed	99.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.5
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.5
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.49
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.48
KOG3905|consensus	473		99.48
KOG1532|consensus	366		99.48
KOG0090|consensus	238		99.47
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.47
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.43
KOG1490|consensus	620		99.43
PRK12739	691	elongation factor G; Reviewed	99.42
PRK14845	1049	translation initiation factor IF-2; Provisional	99.41
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.4
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.39
PRK00007	693	elongation factor G; Reviewed	99.39
PRK09866	741	hypothetical protein; Provisional	99.36
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.33
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.32
PRK13768	253	GTPase; Provisional	99.31
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.3
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.29
KOG0705|consensus	749		99.27
PTZ00416	836	elongation factor 2; Provisional	99.27
PRK12740	668	elongation factor G; Reviewed	99.27
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.26
PRK07560	731	elongation factor EF-2; Reviewed	99.25
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.24
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.24
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.18
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.17
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.17
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.17
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.16
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.13
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.1
KOG0461|consensus	522		99.08
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.07
KOG1144|consensus	1064		99.06
KOG0410|consensus	410		99.05
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.05
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.05
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.01
KOG0468|consensus	971		99.01
KOG1707|consensus	625		99.01
PTZ00258	390	GTP-binding protein; Provisional	98.98
KOG0458|consensus	603		98.96
PRK09601	364	GTP-binding protein YchF; Reviewed	98.95
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.93
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.92
KOG3887|consensus	347		98.9
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.88
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.87
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.86
KOG3886|consensus	295		98.84
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
KOG2486|consensus	320		98.79
KOG0082|consensus	354		98.77
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.74
KOG1954|consensus	532		98.73
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.73
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.72
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.7
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.7
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.69
KOG2655|consensus	366		98.65
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.64
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.63
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.62
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.61
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.6
KOG1547|consensus	336		98.6
KOG1486|consensus	364		98.56
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.55
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.54
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.51
COG1161	322	Predicted GTPases [General function prediction onl	98.5
PRK12289	352	GTPase RsgA; Reviewed	98.49
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.48
PRK00098	298	GTPase RsgA; Reviewed	98.48
PRK12288	347	GTPase RsgA; Reviewed	98.47
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.47
KOG1491|consensus	391		98.46
PRK12288	347	GTPase RsgA; Reviewed	98.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.41
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.4
KOG0465|consensus	721		98.39
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.38
PRK12289	352	GTPase RsgA; Reviewed	98.38
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.37
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.34
KOG0464|consensus	753		98.31
COG1162	301	Predicted GTPases [General function prediction onl	98.28
KOG0467|consensus	887		98.27
KOG0099|consensus	379		98.25
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.19
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.17
KOG0448|consensus	749		98.15
PRK13796	365	GTPase YqeH; Provisional	98.14
KOG1487|consensus	358		98.11
PRK00098	298	GTPase RsgA; Reviewed	98.1
KOG1143|consensus	591		98.09
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.09
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.06
KOG0085|consensus	359		98.04
PRK10416	318	signal recognition particle-docking protein FtsY;	98.03
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.01
cd03112	158	CobW_like The function of this protein family is u	98.0
KOG1424|consensus	562		97.93
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.92
PRK14974	336	cell division protein FtsY; Provisional	97.92
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.91
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.87
KOG0460|consensus	449		97.85
PRK13695	174	putative NTPase; Provisional	97.85
PRK13796	365	GTPase YqeH; Provisional	97.78
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.76
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.74
KOG4273|consensus	418		97.72
PRK08118	167	topology modulation protein; Reviewed	97.7
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.69
PRK07261	171	topology modulation protein; Provisional	97.69
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.68
PRK01889	356	GTPase RsgA; Reviewed	97.67
KOG0469|consensus	842		97.64
COG3523	1188	IcmF Type VI protein secretion system component Va	97.64
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.62
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.61
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.58
KOG3859|consensus	406		97.57
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.56
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.56
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.55
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.55
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.54
KOG2484|consensus	435		97.54
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.53
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.53
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.52
KOG1533|consensus	290		97.52
PRK05480	209	uridine/cytidine kinase; Provisional	97.52
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.51
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.51
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.5
PRK14530	215	adenylate kinase; Provisional	97.5
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.49
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.49
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.49
PF00004	132	AAA: ATPase family associated with various cellula	97.46
PRK06217	183	hypothetical protein; Validated	97.45
KOG0463|consensus	641		97.44
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.43
PRK14738	206	gmk guanylate kinase; Provisional	97.43
PRK03839	180	putative kinase; Provisional	97.42
PRK07429	327	phosphoribulokinase; Provisional	97.42
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.41
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.41
PRK08233	182	hypothetical protein; Provisional	97.41
smart00382	148	AAA ATPases associated with a variety of cellular	97.41
KOG2485|consensus	335		97.38
PRK00300	205	gmk guanylate kinase; Provisional	97.37
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.37
PRK14737	186	gmk guanylate kinase; Provisional	97.36
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.36
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.36
PTZ00088	229	adenylate kinase 1; Provisional	97.35
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.35
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.35
KOG3347|consensus	176		97.34
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.34
cd03111	106	CpaE_like This protein family consists of proteins	97.34
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.33
PRK14532	188	adenylate kinase; Provisional	97.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.31
KOG3354|consensus	191		97.3
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.29
PRK14531	183	adenylate kinase; Provisional	97.28
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.27
KOG2423|consensus	572		97.27
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.27
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.27
PLN02674	244	adenylate kinase	97.25
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.24
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.23
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.23
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.23
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.22
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.21
PRK13949	169	shikimate kinase; Provisional	97.21
PRK02496	184	adk adenylate kinase; Provisional	97.21
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.19
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.18
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.17
PRK00625	173	shikimate kinase; Provisional	97.17
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.17
PRK05541	176	adenylylsulfate kinase; Provisional	97.16
PRK06547	172	hypothetical protein; Provisional	97.16
PRK05057	172	aroK shikimate kinase I; Reviewed	97.15
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.15
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.13
PRK01889	356	GTPase RsgA; Reviewed	97.13
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.13
PLN02200	234	adenylate kinase family protein	97.12
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.1
PRK08356	195	hypothetical protein; Provisional	97.1
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.09
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.08
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.08
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.08
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.07
PTZ00301	210	uridine kinase; Provisional	97.07
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.07
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.06
PRK00279	215	adk adenylate kinase; Reviewed	97.06
PRK04040	188	adenylate kinase; Provisional	97.06
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.05
PRK04195	482	replication factor C large subunit; Provisional	97.05
PRK14529	223	adenylate kinase; Provisional	97.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.04
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.03
PHA00729	226	NTP-binding motif containing protein	97.02
PRK14526	211	adenylate kinase; Provisional	97.02
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.02
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.01
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.01
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.99
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.99
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.99
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.99
PLN02459	261	probable adenylate kinase	96.99
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.98
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.97

>KOG0084|consensus

Probab=100.00  E-value=4.6e-39  Score=225.67  Aligned_cols=160  Identities=34%  Similarity=0.495  Sum_probs=146.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc
Q psy17231          2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK   81 (189)
Q Consensus         2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   81 (189)
                      +..-.+.+||+++|++|||||+|+.||..+.|.+.+  ..|+|+++...++.++++.+++++|||+||++|+++...+|+
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~--~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR   80 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESY--ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR   80 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhh--cceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc
Confidence            344467899999999999999999999999998777  899999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCc-eEEeeccCCCCH
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISS-TYKTSCKTGEGV  144 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~-~~~~Sa~~~~~i  144 (189)
                      ++|++|+|||+++++||+.+..|+.++.++. +++|.++||||||+...               ..+ |+|+|||++.|+
T Consensus        81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence            9999999999999999999999999999998 77899999999996533               225 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy17231        145 EEMFADIGRQLILSNRSRL  163 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~~~~  163 (189)
                      ++.|..+...+..+.....
T Consensus       161 e~~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRKGLHV  179 (205)
T ss_pred             HHHHHHHHHHHHHhcccCC
Confidence            9999999999988876544

>KOG0092|consensus

Probab=100.00  E-value=3.8e-37  Score=215.24  Aligned_cols=155  Identities=37%  Similarity=0.540  Sum_probs=142.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ....+|++++|+.+||||||+-|+..+.|.+..  .+|+|-.+.++++...+..++|.||||+|+++|.++-+.++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~--e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~   79 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENI--EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGAN   79 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCcccccc--ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCc
Confidence            467899999999999999999999999997765  899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||+++.+||..++.|+..+.+.. +++-+.+||||+|+...               .-.|||+|||+|.|++++|
T Consensus        80 AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if  159 (200)
T KOG0092|consen   80 AAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIF  159 (200)
T ss_pred             EEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHH
Confidence            9999999999999999999999999987 66777789999887652               2289999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy17231        149 ADIGRQLILSNRS  161 (189)
Q Consensus       149 ~~i~~~i~~~~~~  161 (189)
                      ..|.+.+......
T Consensus       160 ~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  160 QAIAEKLPCSDPQ  172 (200)
T ss_pred             HHHHHhccCcccc
Confidence            9999999876544

>KOG0078|consensus

Probab=100.00  E-value=2.9e-35  Score=209.21  Aligned_cols=155  Identities=32%  Similarity=0.489  Sum_probs=142.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||+|+.+|..+.|....  ..|+|+++..+++..++..+.+++|||+||++|..+...++++|++
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45799999999999999999999999996555  8999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||+++..+|+++..|+..+..+. +++|.++||||+|+...               ...|+|+||++|.||++.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            999999999999999999999999988 69999999999997542               34999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy17231        150 DIGRQLILSNRSR  162 (189)
Q Consensus       150 ~i~~~i~~~~~~~  162 (189)
                      .+.+.+.++....
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999999765443

>KOG0394|consensus

Probab=100.00  E-value=9.1e-36  Score=206.63  Aligned_cols=159  Identities=35%  Similarity=0.554  Sum_probs=144.5

Q ss_pred             CCC-CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH
Q psy17231          1 MAS-IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY   79 (189)
Q Consensus         1 m~~-~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   79 (189)
                      |++ .+...+||+++|++|+|||||.+++.+.+|...+  ..|+|.++..+.+.++++.+.+++|||+|+++|.++.-.+
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy--kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aF   78 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQY--KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAF   78 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHh--ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccce
Confidence            666 3466799999999999999999999999997766  8999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc------------------CCceEEe
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL------------------ISSTYKT  136 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~------------------~~~~~~~  136 (189)
                      ++++|++++|||++++++|+.+..|..++....     +..|+||+|||.|..+.                  ..+|||+
T Consensus        79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEt  158 (210)
T KOG0394|consen   79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFET  158 (210)
T ss_pred             ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEe
Confidence            999999999999999999999999999998875     56899999999776431                  1299999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      |||...|+++.|+.+.+..+.....
T Consensus       159 SAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  159 SAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cccccccHHHHHHHHHHHHHhccch
Confidence            9999999999999999999888754

>KOG0094|consensus

Probab=100.00  E-value=1.7e-35  Score=207.23  Aligned_cols=154  Identities=31%  Similarity=0.563  Sum_probs=139.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+|++++|+.+|||||||+||..+.|...+  .+|+|.++...++.+.+..+.+++|||+||++|+.+-+.+++++.
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~Y--qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccc--cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            456799999999999999999999999996666  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++|+|||++|..+|++..+|+..++...  .++-+++||||.|+..               +...|+++||+.|.||.++
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL  176 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence            9999999999999999999999999987  3577789999977542               2348999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy17231        148 FADIGRQLILSNR  160 (189)
Q Consensus       148 ~~~i~~~i~~~~~  160 (189)
                      |..|...+.....
T Consensus       177 FrrIaa~l~~~~~  189 (221)
T KOG0094|consen  177 FRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHhccCccc
Confidence            9998888876644

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-34  Score=209.99  Aligned_cols=152  Identities=25%  Similarity=0.351  Sum_probs=135.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|+.|||||||+++|..+.+...+  .++++.++....+..++..+.+++||++|+++|..++..++++++++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPY--GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            5689999999999999999999998886554  56667777777788888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++|||++++++|+++..|+.++....++.|+||||||.|+..               ...+|++|||++|.||+++|+++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999999987778899999999999743               12379999999999999999999


Q ss_pred             HHHHHHhhh
Q psy17231        152 GRQLILSNR  160 (189)
Q Consensus       152 ~~~i~~~~~  160 (189)
                      ++.+..+..
T Consensus       163 ~~~i~~~~~  171 (189)
T cd04121         163 ARIVLMRHG  171 (189)
T ss_pred             HHHHHHhcC
Confidence            998876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.5e-34  Score=211.71  Aligned_cols=149  Identities=36%  Similarity=0.584  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +.|+++|+.|||||||++++..+.|...+  .+|++.++....+..++..+.+++||++|+++|..++..++++++++++
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~--~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl   78 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEAC--KSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL   78 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence            36899999999999999999999987655  6788878888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      |||++++++|+.+..|+..+.... .+.|+++|+||+|+...                ...|++|||++|.||+++|+++
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887664 67999999999986321                2368999999999999999999


Q ss_pred             HHHHHHhh
Q psy17231        152 GRQLILSN  159 (189)
Q Consensus       152 ~~~i~~~~  159 (189)
                      ++.+.+..
T Consensus       159 ~~~~~~~~  166 (202)
T cd04120         159 VDDILKKM  166 (202)
T ss_pred             HHHHHHhC
Confidence            99887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098|consensus

Probab=100.00  E-value=8.7e-35  Score=202.15  Aligned_cols=157  Identities=31%  Similarity=0.460  Sum_probs=144.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+|++++|+.|||||+|+.+|..+.|.+.+  ..|+|+++....+.++++++++++|||+|++.|.++...+++.+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~h--d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVH--DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccc--cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            356799999999999999999999999997666  799999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++++|..+..|+.+++++. ++..++++|||+|+..-.               -.++++||++++|++|+|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            9999999999999999999999999996 899999999999975432               178999999999999999


Q ss_pred             HHHHHHHHHhhhhhh
Q psy17231        149 ADIGRQLILSNRSRL  163 (189)
Q Consensus       149 ~~i~~~i~~~~~~~~  163 (189)
                      ......+.+....-.
T Consensus       161 ~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  161 INTAKEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998876543

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=9.9e-34  Score=206.29  Aligned_cols=150  Identities=24%  Similarity=0.391  Sum_probs=130.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||++++..+.|...+  .+|++..+ ...+..++..+.+.+|||+|+++|..++..+++++|+
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~   77 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEY--IPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNV   77 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCC--CCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCE
Confidence            45689999999999999999999999986655  77777443 4445678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231         86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~  136 (189)
                      +++|||++++++|+.+. .|+..+....+++|+++|+||.|+.+.                           . .+|++|
T Consensus        78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  157 (191)
T cd01875          78 FIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC  157 (191)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            99999999999999996 698888766678999999999997431                           1 379999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ||++|.||+++|+++++.+...
T Consensus       158 SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         158 SALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999988654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=9.8e-34  Score=203.43  Aligned_cols=145  Identities=25%  Similarity=0.368  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +|++++|++|||||||+.++..+.|...+  .+|++..+ ...+..++..+.+.+|||+|+++|..++..+++.++++++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~--~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il   78 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   78 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC--CCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence            68999999999999999999999997655  77877544 4456678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-------------------------CC-ceEEeeccCC
Q psy17231         89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------------IS-STYKTSCKTG  141 (189)
Q Consensus        89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------------~~-~~~~~Sa~~~  141 (189)
                      |||++++++|+.+ ..|+..+....+++|+++||||+|+.+.                         .. .|+||||++|
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            9999999999998 7899999877678999999999998431                         12 5899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQLI  156 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~  156 (189)
                      .||+++|+.+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=9.2e-34  Score=204.67  Aligned_cols=150  Identities=19%  Similarity=0.359  Sum_probs=131.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +...+||+++|++|||||||++++..+.+...+  .+|++..+ ...+..++..+.+.+|||+|+++|..++..++++++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~--~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad   78 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD   78 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCcc--CCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCC
Confidence            346789999999999999999999999987655  77776444 456778888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEE
Q psy17231         85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~  135 (189)
                      ++++|||++++++|+++ ..|+..+....++.|+++||||+|+..                           .. .+|+|
T Consensus        79 ~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E  158 (182)
T cd04172          79 AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  158 (182)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999997 899999988778899999999999753                           12 27999


Q ss_pred             eeccCCCC-HHHHHHHHHHHHHH
Q psy17231        136 TSCKTGEG-VEEMFADIGRQLIL  157 (189)
Q Consensus       136 ~Sa~~~~~-i~~~~~~i~~~i~~  157 (189)
                      |||++|.| |+++|+.+++..++
T Consensus       159 ~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         159 CSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHhc
Confidence            99999998 99999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=7.4e-33  Score=203.23  Aligned_cols=156  Identities=27%  Similarity=0.466  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +||+++|++|||||||+++|.++.+...+  .+|++.++....+..+ +..+.+.+||+||++.+..++..+++.+++++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~--~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i   78 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY--KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI   78 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence            58999999999999999999998886655  7788878777777777 77889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc--c--------------CCceEEeeccCCCCHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN--L--------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~--~--------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +|||++++++|+.+..|+..+....     .++|+++|+||+|+..  .              ...|+++||++|.|+++
T Consensus        79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            9999999999999999998886542     5789999999999751  1              13799999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhh
Q psy17231        147 MFADIGRQLILSNRSRLELQ  166 (189)
Q Consensus       147 ~~~~i~~~i~~~~~~~~~~~  166 (189)
                      +|+++++.+.+.........
T Consensus       159 ~f~~l~~~l~~~~~~~~~~~  178 (201)
T cd04107         159 AMRFLVKNILANDKNLQQAE  178 (201)
T ss_pred             HHHHHHHHHHHhchhhHhhc
Confidence            99999999987755443333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087|consensus

Probab=100.00  E-value=1.2e-33  Score=200.27  Aligned_cols=155  Identities=31%  Similarity=0.475  Sum_probs=144.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||-|+.||..++|....  .+|+|+++.+.+..++++.++.+||||+||++|+.+..++++++.+
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~S--ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLES--KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCccc--ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            45799999999999999999999999997666  8999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++.+.+|+.+..|+.+++.+. +++++++||||+|+....               -.++++||..+.|+++.|+
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            999999999999999999999999998 899999999999987632               1789999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy17231        150 DIGRQLILSNRSR  162 (189)
Q Consensus       150 ~i~~~i~~~~~~~  162 (189)
                      .++..|.+.....
T Consensus       170 ~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  170 RVLTEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887654

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.8e-33  Score=200.94  Aligned_cols=146  Identities=20%  Similarity=0.380  Sum_probs=127.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||++++..+.+...+  .+|++..+ ...+..++..+.+.+|||+|+++|..+++.+++.+++++
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i   77 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETY--VPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL   77 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCc--CCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence            479999999999999999999999887655  67776444 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------c------------C-CceEEeec
Q psy17231         88 LVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------L------------I-SSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~------------~-~~~~~~Sa  138 (189)
                      +|||++++++|+.+ ..|+..+....++.|+++||||+|+..               .            . ..|+||||
T Consensus        78 lvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          78 ICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            99999999999996 899999988778899999999999743               1            1 26899999


Q ss_pred             cCCCC-HHHHHHHHHHHHH
Q psy17231        139 KTGEG-VEEMFADIGRQLI  156 (189)
Q Consensus       139 ~~~~~-i~~~~~~i~~~i~  156 (189)
                      ++|.| |+++|..++++.+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080|consensus

Probab=100.00  E-value=1.7e-33  Score=191.36  Aligned_cols=153  Identities=32%  Similarity=0.481  Sum_probs=140.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|.+|||||||+.+|..+.|.+..  ..|+|+++..+.+.+++.++++.+|||+|+++|+.+.+.+++++.+
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~--~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLH--PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccC--CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            34599999999999999999999999997766  7789999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +|+|||++.+++|..+..|++++..+.  +++-.++|+||.|...               ..+-|+|+||++..|++..|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            999999999999999999999998887  7788889999977552               23478999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy17231        149 ADIGRQLILSNR  160 (189)
Q Consensus       149 ~~i~~~i~~~~~  160 (189)
                      +.++.+|++...
T Consensus       167 eelveKIi~tp~  178 (209)
T KOG0080|consen  167 EELVEKIIETPS  178 (209)
T ss_pred             HHHHHHHhcCcc
Confidence            999999987654

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6e-33  Score=206.08  Aligned_cols=152  Identities=24%  Similarity=0.451  Sum_probs=135.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ++..+||+++|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||++|+++|..++..+++.++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   87 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence            467899999999999999999999999886555  778887887777777777899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++++|||++++++|+.+..|+..+....++.|+++|+||+|+...             ..+||+|||++|.|++++|+++
T Consensus        88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            999999999999999999999999887778999999999997421             2378999999999999999999


Q ss_pred             HHHHHHh
Q psy17231        152 GRQLILS  158 (189)
Q Consensus       152 ~~~i~~~  158 (189)
                      ++.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988755

>KOG0093|consensus

Probab=100.00  E-value=9.7e-34  Score=189.80  Aligned_cols=156  Identities=32%  Similarity=0.491  Sum_probs=142.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+|++++|++.+|||||+.+.....|....  ..|.|+++..+++....+.+++++|||.|+++|..+..+++++++++
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~af--vsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAF--VSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccce--eeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            3679999999999999999999999997655  88999999999988888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      |+|||++|.++|..++.|.-.+..+. .+.|+|+|+||||+...               ...|||+|||.+.|++++|+.
T Consensus        98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            99999999999999999999998887 89999999999997533               348999999999999999999


Q ss_pred             HHHHHHHhhhhhhh
Q psy17231        151 IGRQLILSNRSRLE  164 (189)
Q Consensus       151 i~~~i~~~~~~~~~  164 (189)
                      ++..|.++..+..+
T Consensus       178 lv~~Ic~kmsesl~  191 (193)
T KOG0093|consen  178 LVDIICDKMSESLD  191 (193)
T ss_pred             HHHHHHHHhhhhhc
Confidence            99999988776543

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.1e-32  Score=205.29  Aligned_cols=152  Identities=19%  Similarity=0.334  Sum_probs=132.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||||+++|..+.|...+  .+|++.++ ...+..++..+.+.+|||+|+++|..++..+++++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y--~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCc--CCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            45789999999999999999999999887655  77877554 4457778889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cCC-ceEEe
Q psy17231         86 AILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LIS-STYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~~-~~~~~  136 (189)
                      +++|||++++++|+.+ ..|+..+....++.|+++|+||+|+..                           ... .|+||
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et  167 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC  167 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence            9999999999999984 899999988777899999999999853                           122 58999


Q ss_pred             eccCCC-CHHHHHHHHHHHHHHhhh
Q psy17231        137 SCKTGE-GVEEMFADIGRQLILSNR  160 (189)
Q Consensus       137 Sa~~~~-~i~~~~~~i~~~i~~~~~  160 (189)
                      ||++|. |++++|+.+++.+.+...
T Consensus       168 SAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            999998 899999999999887543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.2e-32  Score=196.17  Aligned_cols=148  Identities=30%  Similarity=0.536  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||+||++++...+..+++.+++++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            479999999999999999999999886554  667777777777788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|+.+..|+..+.... ++.|+++|+||+|+...               ..+++++||++|.|++++|+++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999887764 67999999999986432               2378999999999999999999


Q ss_pred             HHHHHH
Q psy17231        152 GRQLIL  157 (189)
Q Consensus       152 ~~~i~~  157 (189)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0079|consensus

Probab=100.00  E-value=7.9e-34  Score=190.46  Aligned_cols=152  Identities=34%  Similarity=0.522  Sum_probs=139.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ..-++.+|+|++|+|||+|+.+|..+.|...+  ..|+|+++...++.+++..++++|||++|++.|..+...++++.++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sY--itTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSY--ITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccce--EEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            34578899999999999999999999886666  8899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +++|||+++.+||.++++|+..++...+..|-++||||+|.++-               ...+||+||+...|++.+|.-
T Consensus        84 v~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   84 VIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            99999999999999999999999999999999999999875422               338899999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      |.+++.+..
T Consensus       164 it~qvl~~k  172 (198)
T KOG0079|consen  164 ITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHH
Confidence            999887765

>KOG0086|consensus

Probab=100.00  E-value=2.9e-33  Score=188.82  Aligned_cols=154  Identities=32%  Similarity=0.509  Sum_probs=140.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ..-+|++++|+.|+|||+|+++|..+++.+..  .+|+|+++....+...++.+++++|||+|+++|++....+++++.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDds--sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDS--SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccc--cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            55789999999999999999999999996655  8899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++|+.+..|+..++... +++.+++++||.|+.+..               -.+.|+||++|+|++|.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            999999999999999999999998886 789999999997764331               1789999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy17231        150 DIGRQLILSNRS  161 (189)
Q Consensus       150 ~i~~~i~~~~~~  161 (189)
                      ...+.|+.+...
T Consensus       165 ~c~~tIl~kIE~  176 (214)
T KOG0086|consen  165 KCARTILNKIES  176 (214)
T ss_pred             HHHHHHHHHHhh
Confidence            999988877543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.9e-32  Score=196.47  Aligned_cols=149  Identities=20%  Similarity=0.350  Sum_probs=128.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|.+|||||||++++..+.+...+  .+|++..+ ...+..++..+.+.+||++|++++..++..+++.+++++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i   78 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH--DPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI   78 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc--CCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence            579999999999999999999999886554  66666333 445677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +|||++++++|+.+..|+..+.+..  +++|+++|+||+|+...               ..+|++|||++|.||+++|++
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141          79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999988777643  57999999999996421               248999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +++.+.+..
T Consensus       159 l~~~~~~~~  167 (172)
T cd04141         159 LVREIRRKE  167 (172)
T ss_pred             HHHHHHHhc
Confidence            999887644

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.2e-32  Score=193.58  Aligned_cols=147  Identities=24%  Similarity=0.468  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.+...+  .+|.+.+.....+..++..+.+.+||++|++++..++..++..+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence            58999999999999999999988875554  6777777777777777778999999999999999898999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      |||++++++|+.+..|+..+.....++|+++|+||+|+...             ..+++++||++|.|++++|+++++.+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            99999999999999999999888778999999999886421             23799999999999999999999888


Q ss_pred             HH
Q psy17231        156 IL  157 (189)
Q Consensus       156 ~~  157 (189)
                      .+
T Consensus       159 ~~  160 (166)
T cd00877         159 LG  160 (166)
T ss_pred             Hh
Confidence            65

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=4.4e-32  Score=197.33  Aligned_cols=154  Identities=22%  Similarity=0.352  Sum_probs=132.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +++.+||+++|++|||||||++++....+...+  .+|.+..+ ...+.+++..+.+++|||||++++..++..+++.++
T Consensus         2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d   78 (189)
T PTZ00369          2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEY--DPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQ   78 (189)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCC
Confidence            467899999999999999999999998876554  56665444 456677888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++|+.+..|+..+.+..  ++.|+++|+||+|+.+.               ..+++++||++|.|++++
T Consensus        79 ~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~  158 (189)
T PTZ00369         79 GFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEA  158 (189)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence            9999999999999999999999887764  57899999999997421               237899999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy17231        148 FADIGRQLILSNRS  161 (189)
Q Consensus       148 ~~~i~~~i~~~~~~  161 (189)
                      |+++++.+.+...+
T Consensus       159 ~~~l~~~l~~~~~~  172 (189)
T PTZ00369        159 FYELVREIRKYLKE  172 (189)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999988766443

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.8e-32  Score=196.08  Aligned_cols=144  Identities=19%  Similarity=0.274  Sum_probs=124.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.|...+  .+|++..+ ...+..++..+.+.+||++|+++|..++..+++.++++++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~--~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il   78 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   78 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence            69999999999999999999999886554  77776544 3345677888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeecc
Q psy17231         89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSCK  139 (189)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa~  139 (189)
                      |||++++++|+.+. .|+..+....+++|+++|+||+|+...                           . ..|++|||+
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            99999999999996 698888776678999999999886431                           1 379999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGRQL  155 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i  155 (189)
                      +|.|++++|+.++++.
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4.9e-32  Score=192.93  Aligned_cols=147  Identities=32%  Similarity=0.512  Sum_probs=128.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+...+  .+|.+.++....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~   79 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF--VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence            79999999999999999999999886655  6677666666666667778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+++..|+..+.... .+.|+++|+||+|+.+.               ..+++++||++|.|++++|++++
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999987765 57999999999987432               13799999999999999999999


Q ss_pred             HHHHH
Q psy17231        153 RQLIL  157 (189)
Q Consensus       153 ~~i~~  157 (189)
                      +.+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=7.2e-32  Score=192.44  Aligned_cols=149  Identities=33%  Similarity=0.499  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||++++.+..+...+  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~   79 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence            4589999999999999999999999887655  66777677666777788888999999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.+.. .+.|+++|+||.|+...               ..+++++||++|.|++++|++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          80 ILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988765 57999999999887521               237899999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +++++.+
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=9.8e-32  Score=196.99  Aligned_cols=154  Identities=32%  Similarity=0.504  Sum_probs=135.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|.+..+...+  .+|++.++....+..++..+.+.+||+||++.+..++..+++.++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            4689999999999999999999998886544  67777777777777788788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++|||++++++|+.+..|+..+....+..|+++|+||.|+...               ..+++++||++|.||+++|+++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999998887778999999999886432               2378999999999999999999


Q ss_pred             HHHHHHhhhhh
Q psy17231        152 GRQLILSNRSR  162 (189)
Q Consensus       152 ~~~i~~~~~~~  162 (189)
                      ++.+.......
T Consensus       163 ~~~~~~~~~~~  173 (199)
T cd04110         163 TELVLRAKKDN  173 (199)
T ss_pred             HHHHHHhhhcc
Confidence            99998765443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=6.6e-32  Score=195.20  Aligned_cols=148  Identities=18%  Similarity=0.292  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||++|+++|..++..++++++++++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~--~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil   78 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDY--IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF   78 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence            58999999999999999999999887654  7888888887888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc--------------------cCCceEEeeccCCCCHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN--------------------LISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~--------------------~~~~~~~~Sa~~~~~i~~~  147 (189)
                      |||++++++|+.+..|+..+.... ...| |+|+||+|+..                    ...++++|||++|.|++++
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999988765 3466 68899999731                    1236899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++.+.+.+..
T Consensus       158 f~~l~~~l~~~~  169 (182)
T cd04128         158 FKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=5.8e-32  Score=200.35  Aligned_cols=151  Identities=20%  Similarity=0.356  Sum_probs=129.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||+++|..+.|...+  .||++.++ ...+..++..+.+.+|||+|+++|..+++.+++.+|+++
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y--~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il   77 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSY--VPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL   77 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence            479999999999999999999999887655  77776444 356677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEEeec
Q psy17231         88 LVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~~Sa  138 (189)
                      +|||++++++|+.+ ..|...+....++.|+++|+||+|+..                           .. .+|+||||
T Consensus        78 lvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA  157 (222)
T cd04173          78 ICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS  157 (222)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence            99999999999999 678877766668899999999999743                           11 27999999


Q ss_pred             cCCCC-HHHHHHHHHHHHHHhhhh
Q psy17231        139 KTGEG-VEEMFADIGRQLILSNRS  161 (189)
Q Consensus       139 ~~~~~-i~~~~~~i~~~i~~~~~~  161 (189)
                      +++.+ |+++|+.++.+.+.+...
T Consensus       158 k~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         158 RSSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CcCCcCHHHHHHHHHHHHHhccCC
Confidence            99985 999999999988765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=6.2e-32  Score=191.76  Aligned_cols=144  Identities=31%  Similarity=0.524  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL   78 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence            58999999999999999999999886554  7788777777778888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+.+..|+..+.... .+.|+++|+||+|+...               ..+|++|||++|.|++++|++++
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988765 47999999999886422               24899999999999999999998


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.6e-31  Score=190.33  Aligned_cols=148  Identities=38%  Similarity=0.572  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.+..+...+  .+|.+.++....+...+..+.+.+||+||++++...+..+++.+++++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii   79 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   79 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence            479999999999999999999998886544  666666777777777888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|+++..|+..+.... ++.|+++|+||+|+...               ..+++++||++|.|++++|+++
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999988765 67999999999886422               2379999999999999999999


Q ss_pred             HHHHHH
Q psy17231        152 GRQLIL  157 (189)
Q Consensus       152 ~~~i~~  157 (189)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.2e-31  Score=193.44  Aligned_cols=150  Identities=31%  Similarity=0.487  Sum_probs=128.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC----------CeEEEEEEEeCCCccccccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD----------DRSIQMQLWDTGGMERVASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~   76 (189)
                      +.+||+++|++|||||||++++..+.+...+  .+|++.++....+.+.          +..+.+.+||+||++++...+
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKF--ITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccC--CCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            4689999999999999999999999886655  6677767665555443          356889999999999999999


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK  139 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~  139 (189)
                      ..+++.++++++|||++++++|..+..|+..+....  ++.|+++|+||+|+...               ..+++++||+
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            999999999999999999999999999999987754  57999999999997431               2378999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q psy17231        140 TGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~~~  158 (189)
                      +|.|++++|+++.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.4e-31  Score=189.91  Aligned_cols=148  Identities=28%  Similarity=0.457  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.+.+..  .++.+.+........++..+.+.+|||+|++.|..++..+++.+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence            58999999999999999999998886654  4555556666667777888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      |||++++.+++.+..|+..+....++.|+++|+||.|+...            ..+++++||++|.|++++|+.+++.+.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  158 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999877678999999999996321            247899999999999999999998876


Q ss_pred             Hh
Q psy17231        157 LS  158 (189)
Q Consensus       157 ~~  158 (189)
                      +.
T Consensus       159 ~~  160 (161)
T cd04124         159 SY  160 (161)
T ss_pred             hc
Confidence            54

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.8e-32  Score=193.28  Aligned_cols=144  Identities=25%  Similarity=0.392  Sum_probs=123.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+|++++|++|||||||+.++..+.+...+  .+|++ +.+...+..++..+.+.+|||+|++++..++..+++.+|+++
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL   77 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcC--CCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence            479999999999999999999999886655  56654 444455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeec
Q psy17231         88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa  138 (189)
                      +|||++++++|+++. .|+..+....++.|+++|+||+|+...                           . .+|++|||
T Consensus        78 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  157 (174)
T cd01871          78 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  157 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence            999999999999995 698888776678999999999987421                           1 27899999


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy17231        139 KTGEGVEEMFADIGRQ  154 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~  154 (189)
                      ++|.|++++|+.+++.
T Consensus       158 ~~~~~i~~~f~~l~~~  173 (174)
T cd01871         158 LTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccCCHHHHHHHHHHh
Confidence            9999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=9.6e-32  Score=195.54  Aligned_cols=148  Identities=25%  Similarity=0.347  Sum_probs=126.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      .||+++|++|||||||+++|..+.+...+  .+|++..+ ...+..++..+.+++||++|++++..++..+++.++++++
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il   77 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY--EPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML   77 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence            48999999999999999999999886654  56665443 3445567777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeecc
Q psy17231         89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSCK  139 (189)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa~  139 (189)
                      |||++++++|+.+. .|+..+....++.|+++|+||+|+...                            ..+|++|||+
T Consensus        78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  157 (189)
T cd04134          78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence            99999999999985 699988877678999999999997431                            1368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhh
Q psy17231        140 TGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~~~~  159 (189)
                      +|.|++++|+++++.+....
T Consensus       158 ~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         158 LNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             cCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.3e-31  Score=188.68  Aligned_cols=145  Identities=32%  Similarity=0.633  Sum_probs=133.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||+++|.++.+...+  .+|.+.+.....+..++..+.+.+||++|++++..++..+++.++++++|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~   78 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENY--IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV   78 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSS--ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccc--cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999999987655  77888899899999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhCC-CCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                      ||++++++|+.+..|+..+....+ +.|++||+||+|+...               ..+|+++||+++.|+.++|..+++
T Consensus        79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999999885 7999999999886641               239999999999999999999999


Q ss_pred             HHH
Q psy17231        154 QLI  156 (189)
Q Consensus       154 ~i~  156 (189)
                      .++
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.7e-31  Score=189.37  Aligned_cols=145  Identities=31%  Similarity=0.495  Sum_probs=125.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++..+.+...+  .+|++ +.....+..++..+.+.+||+||+++|..++..+++.+++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV   77 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence            379999999999999999999988876554  55554 445566777888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +|||++++++|+.+..|+..+....  .+.|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04136          78 LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFAD  157 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999887754  57999999999986421               237899999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +++.+
T Consensus       158 l~~~~  162 (163)
T cd04136         158 LVRQI  162 (163)
T ss_pred             HHHhc
Confidence            98764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.2e-31  Score=189.34  Aligned_cols=146  Identities=29%  Similarity=0.501  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+...+  .++++.++....+..++..+.+++||++|++++..++..+++.++++++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il   78 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL   78 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence            58999999999999999999999987654  7788878877788888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC------CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA------ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      |||++++++|+.+..|+..+....      .+.|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  158 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM  158 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999999988764      36999999999997511               237899999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        148 FADIGRQLI  156 (189)
Q Consensus       148 ~~~i~~~i~  156 (189)
                      |+++++.+.
T Consensus       159 ~~~l~~~l~  167 (168)
T cd04119         159 FQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.4e-31  Score=189.27  Aligned_cols=146  Identities=30%  Similarity=0.541  Sum_probs=127.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|+|||||++++..+.+....  .++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   79 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGA   79 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence            4689999999999999999999988886555  56666677677777888778999999999999998899999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++|+.+..|+..+.... .++|+++|+||+|+...                ...++++||++|.|++++|+
T Consensus        80 llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          80 IIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998764 67999999999997422                12689999999999999999


Q ss_pred             HHHHH
Q psy17231        150 DIGRQ  154 (189)
Q Consensus       150 ~i~~~  154 (189)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.5e-31  Score=188.98  Aligned_cols=146  Identities=27%  Similarity=0.410  Sum_probs=125.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||++++..+.+...+  .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV   77 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence            479999999999999999999988776554  56665333 456677787889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +|||++++++|+.+..|+..+....  ++.|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  157 (164)
T cd04175          78 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYD  157 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999999987754  68999999999887421               248999999999999999999


Q ss_pred             HHHHHH
Q psy17231        151 IGRQLI  156 (189)
Q Consensus       151 i~~~i~  156 (189)
                      +++.+.
T Consensus       158 l~~~l~  163 (164)
T cd04175         158 LVRQIN  163 (164)
T ss_pred             HHHHhh
Confidence            988764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2e-31  Score=194.86  Aligned_cols=143  Identities=25%  Similarity=0.467  Sum_probs=128.8

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC
Q psy17231         14 CGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        14 ~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   93 (189)
                      +|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||++|+++|..++..+++.++++++|||++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~--~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t   78 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT   78 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence            699999999999999988876544  778888888888888888899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231         94 NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus        94 ~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ++.+|+.+..|+..+.+..+++|+++|+||+|+...             ...|++|||++|.||+++|+++++.+.+.
T Consensus        79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999887778999999999996321             23899999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.7e-31  Score=189.37  Aligned_cols=146  Identities=32%  Similarity=0.519  Sum_probs=128.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++.++.+...+  .+|++.++....+..++..+.+++||+||+++|..++..+++.+|++++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   79 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNY--KATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV   79 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence            7999999999999999999999887655  77888787777778888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ||++++++++.+..|+..+.+..  ...|+++|+||.|+...                 ..+|+++||++|.|++++|+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~  159 (170)
T cd04108          80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFR  159 (170)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999987653  35789999999886321                 237899999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +++.+.+
T Consensus       160 l~~~~~~  166 (170)
T cd04108         160 VAALTFE  166 (170)
T ss_pred             HHHHHHH
Confidence            9888754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.2e-31  Score=196.45  Aligned_cols=148  Identities=29%  Similarity=0.443  Sum_probs=129.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +||+++|++|||||||+++|.+..+...+  .+|++.++....+.+++ ..+.+.+||++|++.+..++..+++.+|+++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii   78 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF   78 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence            58999999999999999999998886555  77888888777777754 5789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +|||++++++|+.+..|+..+....    .++|+++|+||.|+...               ..+++++||++|.|++++|
T Consensus        79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf  158 (215)
T cd04109          79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLF  158 (215)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999999988764    35789999999997521               2368999999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++++.+...
T Consensus       159 ~~l~~~l~~~  168 (215)
T cd04109         159 QQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHhc
Confidence            9999998765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=9.8e-31  Score=193.91  Aligned_cols=152  Identities=32%  Similarity=0.499  Sum_probs=135.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|.+..+...+  .+|++.++....+.+++..+.+.+||++|++++..++..+++.++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~--~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES--KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999998876544  67888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.... .+.|+++|+||+|+.+.               ..+++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988765 57999999999996432               237999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy17231        151 IGRQLILSNR  160 (189)
Q Consensus       151 i~~~i~~~~~  160 (189)
                      +++.+.+...
T Consensus       169 l~~~i~~~~~  178 (216)
T PLN03110        169 ILLEIYHIIS  178 (216)
T ss_pred             HHHHHHHHhh
Confidence            9999877543

>PLN03108 Rab family protein; Provisional

Probab=99.98  E-value=1.3e-30  Score=192.41  Aligned_cols=152  Identities=30%  Similarity=0.444  Sum_probs=133.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|....+...+  .+|++.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            4689999999999999999999998886554  66777788777788888888999999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.... +..|+++|+||+|+...               ..+++++||+++.|++++|++
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877654 67999999999987431               237899999999999999999


Q ss_pred             HHHHHHHhhh
Q psy17231        151 IGRQLILSNR  160 (189)
Q Consensus       151 i~~~i~~~~~  160 (189)
                      +++.+.+...
T Consensus       163 l~~~~~~~~~  172 (210)
T PLN03108        163 TAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHhh
Confidence            9999887643

>cd01868 Rab11_like Rab11-like

Probab=99.98  E-value=8.2e-31  Score=186.42  Aligned_cols=146  Identities=36%  Similarity=0.570  Sum_probs=128.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++....+...+  .++.+.++....+..++..+.+.+||+||++++..++..+++.+++++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            479999999999999999999988876555  667777777777888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|+.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988876 46999999999886432               2379999999999999999999


Q ss_pred             HHHH
Q psy17231        152 GRQL  155 (189)
Q Consensus       152 ~~~i  155 (189)
                      ++.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04125 RabA_like RabA-like subfamily

Probab=99.98  E-value=9e-31  Score=190.22  Aligned_cols=149  Identities=37%  Similarity=0.557  Sum_probs=130.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.++.+...+  .+|.+.+.....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil   78 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST--KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence            58999999999999999999999886544  6777767766777777878899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+.+..|+..+.... .+.|+++|+||.|+.+.               ..+++++||++|.|++++|++++
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988765 56899999999986521               23799999999999999999999


Q ss_pred             HHHHHhh
Q psy17231        153 RQLILSN  159 (189)
Q Consensus       153 ~~i~~~~  159 (189)
                      +.+.+..
T Consensus       159 ~~~~~~~  165 (188)
T cd04125         159 KLIIKRL  165 (188)
T ss_pred             HHHHHHh
Confidence            9987653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.98  E-value=6.2e-31  Score=186.34  Aligned_cols=144  Identities=35%  Similarity=0.547  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .++.+.+.....+..++..+.+.+||+||++++...+..+++.++++++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~   78 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999886655  5566666766777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|..+..|+..+.... ++.|+++|+||.|+...               ..+++++||+++.|++++|++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999887654 78999999999887432               24899999999999999999998


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       159 ~~  160 (161)
T cd04113         159 RS  160 (161)
T ss_pred             Hh
Confidence            75

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04111 Rab39 Rab39 subfamily

Probab=99.98  E-value=8e-31  Score=193.69  Aligned_cols=152  Identities=32%  Similarity=0.496  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +.+||+++|++|||||||+++|.+..+...+  .+|++.++....+.. ++..+.+++||++|++.+..++..+++.+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   78 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVG   78 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcE
Confidence            3589999999999999999999998886654  677777877777766 4567899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|+.+..|+..+....  ..+|+++|+||.|+...               ..+|+++||++|.|++++|
T Consensus        79 iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f  158 (211)
T cd04111          79 VLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAF  158 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999987764  45789999999987431               2379999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy17231        149 ADIGRQLILSNR  160 (189)
Q Consensus       149 ~~i~~~i~~~~~  160 (189)
                      +++++.+.+...
T Consensus       159 ~~l~~~~~~~~~  170 (211)
T cd04111         159 ELLTQEIYERIK  170 (211)
T ss_pred             HHHHHHHHHHhh
Confidence            999998876643

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095|consensus

Probab=99.98  E-value=1.3e-31  Score=180.27  Aligned_cols=151  Identities=37%  Similarity=0.575  Sum_probs=135.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      -+||+++|..|+|||+|+++|..+-|++..  ..|+|+++-.+++..+++++++++|||+|+++|+++.+.+++.+++++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            589999999999999999999999999887  889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++.+.+|+-++.|+.++..+. ...--|+|+||.|+..-.               +-|.|+||+.-.|++.+|..+
T Consensus        85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~  164 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL  164 (213)
T ss_pred             EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence            9999999999999999999999987 556778999997754321               145789999999999999888


Q ss_pred             HHHHHHhhh
Q psy17231        152 GRQLILSNR  160 (189)
Q Consensus       152 ~~~i~~~~~  160 (189)
                      .-.+....+
T Consensus       165 a~rli~~ar  173 (213)
T KOG0095|consen  165 ACRLISEAR  173 (213)
T ss_pred             HHHHHHHHH
Confidence            777665543

>cd04176 Rap2 Rap2 subgroup

Probab=99.98  E-value=8.3e-31  Score=186.04  Aligned_cols=145  Identities=34%  Similarity=0.466  Sum_probs=125.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||++++..+.+....  .+|.+ ++....+..++..+.+.+||+||+++|..++..+++++++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i   77 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   77 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence            479999999999999999999999887654  45554 455566777888888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +|||++++++|+++..|+..+.+..  .++|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04176          78 VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE  157 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999888764  58999999999986321               237899999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +++.+
T Consensus       158 l~~~l  162 (163)
T cd04176         158 IVRQM  162 (163)
T ss_pred             HHHhc
Confidence            98754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01866 Rab2 Rab2 subfamily

Probab=99.98  E-value=1.3e-30  Score=186.08  Aligned_cols=148  Identities=31%  Similarity=0.471  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.+..+....  .++.+.++....+..++....+.+||+||++++..+...+++.+|+++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            489999999999999999999988875554  556666777777788888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++++.+..|+..+.... ++.|+++|+||.|+...               ...++++||+++.|++++|+++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998764 68999999999886421               2378999999999999999999


Q ss_pred             HHHHHH
Q psy17231        152 GRQLIL  157 (189)
Q Consensus       152 ~~~i~~  157 (189)
                      ++.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.98  E-value=8.5e-31  Score=190.11  Aligned_cols=151  Identities=21%  Similarity=0.347  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +||+++|++|||||||+++|.++.+...+  .+|++.++... +... +..+.+.+|||||++++..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii   77 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY--VPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL   77 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCC--CCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence            48999999999999999999999886554  56665554333 4443 66789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------CC-ceEEeeccCCCCHHH
Q psy17231         88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------IS-STYKTSCKTGEGVEE  146 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~-~~~~~Sa~~~~~i~~  146 (189)
                      +|||++++++|+.+. .|+..+....++.|+++|+||.|+...                   .. +++++||++|.|+++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  157 (187)
T cd04132          78 ICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE  157 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence            999999999999995 688887766678999999999997431                   12 789999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy17231        147 MFADIGRQLILSNRSR  162 (189)
Q Consensus       147 ~~~~i~~~i~~~~~~~  162 (189)
                      +|+.+++.+......+
T Consensus       158 ~f~~l~~~~~~~~~~~  173 (187)
T cd04132         158 VFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999998776555

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.98  E-value=1.4e-30  Score=192.80  Aligned_cols=146  Identities=29%  Similarity=0.446  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|.+|||||||+++|..+.+..   +.+|++.++....+    ..+.+.+||++|++.|..++..+++.++++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC---CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence            589999999999999999999998853   25677666544332    35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc-------------------c---------------C---
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN-------------------L---------------I---  130 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~-------------------~---------------~---  130 (189)
                      |||++++++|+.+..|+..+.+.. +++|+|+|+||+|+..                   .               .   
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~  153 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK  153 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence            999999999999998888777654 6799999999999754                   0               1   


Q ss_pred             -----------CceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        131 -----------SSTYKTSCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       131 -----------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                                 .+|+||||++|.||+++|+.+++.+......
T Consensus       154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~  195 (220)
T cd04126         154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA  195 (220)
T ss_pred             cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                       2589999999999999999999988765443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04116 Rab9 Rab9 subfamily

Probab=99.98  E-value=9.1e-31  Score=187.11  Aligned_cols=148  Identities=34%  Similarity=0.554  Sum_probs=128.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +...+||+++|++|||||||++++....+....  .++++.++....+..++..+.+.+||+||++++..++..+++.++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d   79 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD   79 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCC
Confidence            456799999999999999999999988886654  667777777777778888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++++|+.+..|+..+....     .++|+++|+||.|+...               ..+++++||++|.|+
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  159 (170)
T cd04116          80 CCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNV  159 (170)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence            9999999999999999999998887643     46899999999886321               137899999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        145 EEMFADIGRQ  154 (189)
Q Consensus       145 ~~~~~~i~~~  154 (189)
                      +++|+++++.
T Consensus       160 ~~~~~~~~~~  169 (170)
T cd04116         160 AAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.98  E-value=9.9e-31  Score=185.34  Aligned_cols=144  Identities=30%  Similarity=0.481  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC--CeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +||+++|++|+|||||++++..+.+...+  .+|++.++....+.+.  +..+.+++||+||++++..++..+++.++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   78 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence            58999999999999999999998886554  6677777766666665  6678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++|||++++++|+.+..|+..+.....+.|+++|+||.|+...               ..+++++||++|.|++++|+++
T Consensus        79 v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999998876678999999999886321               2378999999999999999998


Q ss_pred             HHH
Q psy17231        152 GRQ  154 (189)
Q Consensus       152 ~~~  154 (189)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.98  E-value=1.3e-30  Score=184.35  Aligned_cols=145  Identities=26%  Similarity=0.419  Sum_probs=123.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.++.+...+  .+|.+ +........++..+.+.+||++|++++..++..+++.+++++
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i   77 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   77 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCc--CCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence            379999999999999999999998876554  55554 333555667777788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+...              ..+++++||++|.|++++|+++
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (162)
T cd04138          78 CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL  157 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999888764  57999999999996431              2379999999999999999999


Q ss_pred             HHHH
Q psy17231        152 GRQL  155 (189)
Q Consensus       152 ~~~i  155 (189)
                      ++.+
T Consensus       158 ~~~~  161 (162)
T cd04138         158 VREI  161 (162)
T ss_pred             HHHh
Confidence            8654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04144 Ras2 Ras2 subfamily

Probab=99.98  E-value=9.3e-31  Score=190.50  Aligned_cols=148  Identities=23%  Similarity=0.358  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||+++|..+.+...+  .+|++.. .......++..+.+.+||+||+++|..++..+++.+|++++|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~--~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   77 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETY--DPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV   77 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC--CCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence            6899999999999999999988886544  5665533 344456677778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ||++++++|+.+..|+..+....    .+.|+++|+||+|+...               ..+|+++||++|.|++++|++
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  157 (190)
T cd04144          78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYT  157 (190)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999998887653    47899999999997321               237999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy17231        151 IGRQLILSNR  160 (189)
Q Consensus       151 i~~~i~~~~~  160 (189)
                      +++.+.+.+.
T Consensus       158 l~~~l~~~~~  167 (190)
T cd04144         158 LVRALRQQRQ  167 (190)
T ss_pred             HHHHHHHhhc
Confidence            9998865543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=1e-30  Score=187.40  Aligned_cols=144  Identities=26%  Similarity=0.455  Sum_probs=123.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF   90 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   90 (189)
                      |+++|++|||||||++++..+.+...+  .++.+ +.....+..++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   77 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDY--VPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF   77 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCC--CCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence            589999999999999999999886554  45554 333445667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEEeeccCC
Q psy17231         91 SLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYKTSCKTG  141 (189)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~~Sa~~~  141 (189)
                      |++++++|+.+. .|+..+....++.|+++|+||+|+..                           .. .+|++|||++|
T Consensus        78 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  157 (174)
T smart00174       78 SVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ  157 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            999999999995 69999888778899999999999753                           11 27899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQLIL  157 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~  157 (189)
                      .|++++|+.+++.+.+
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.98  E-value=1.7e-30  Score=184.50  Aligned_cols=145  Identities=26%  Similarity=0.438  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .+|.+ +........++..+.+.+||+||++++..++..+++.++++++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY--DPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccc--CCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence            58999999999999999999998876554  44443 4445566677778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      |||++++++|+.+..|+..+.+..  .+.|+++|+||+|+...               ..+++++||++|.|++++|+++
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  157 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL  157 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence            999999999999999998887754  47899999999986431               2379999999999999999999


Q ss_pred             HHHHH
Q psy17231        152 GRQLI  156 (189)
Q Consensus       152 ~~~i~  156 (189)
                      ++.+.
T Consensus       158 ~~~~~  162 (164)
T smart00173      158 VREIR  162 (164)
T ss_pred             HHHHh
Confidence            98765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=1.9e-30  Score=188.99  Aligned_cols=152  Identities=36%  Similarity=0.553  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++....+... .+.+|++.++....+.+++..+.+.+||+||++++...+..+++.++++++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~   79 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL   79 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence            5899999999999999999998887532 235666667666667778888999999999999998888999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+++..|+..+.... .++|+++|+||.|+...               ..+|+++||++|.|++++|++++
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988876 57999999999997421               23799999999999999999999


Q ss_pred             HHHHHhhhh
Q psy17231        153 RQLILSNRS  161 (189)
Q Consensus       153 ~~i~~~~~~  161 (189)
                      +.+.+....
T Consensus       160 ~~~~~~~~~  168 (191)
T cd04112         160 KELKHRKYE  168 (191)
T ss_pred             HHHHHhccc
Confidence            998776533

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=3.8e-30  Score=187.62  Aligned_cols=150  Identities=31%  Similarity=0.578  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||+++|..+.+.. ..+.+|++.++....+..++..+.+.+||++|++++..++..+++.++++++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil   79 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV   79 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence            489999999999999999999988763 2336777777777778888888999999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccCCCCHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      |||++++++|+.+..|+..+....++.|+++|+||+|+...                   ..+++++||++|.|++++|+
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998876668999999999996421                   13679999999999999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999987644

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=3.5e-30  Score=184.28  Aligned_cols=146  Identities=30%  Similarity=0.522  Sum_probs=127.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cchHHHhcCCcEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-SITSSYYKFAEAA   86 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~   86 (189)
                      .+||+++|++|||||||++++....+...+  .++++.++....+..++..+.+.+||++|++++. .++..+++.+|++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~   79 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV   79 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence            579999999999999999999998886554  6777777777788888888999999999998886 5788889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC---CCCHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT---GEGVEE  146 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~---~~~i~~  146 (189)
                      ++|||++++++|+.+..|+..+....  .++|+++|+||+|+.+.               ..+|+++||++   +.++++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~  159 (170)
T cd04115          80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA  159 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence            99999999999999999999988764  67999999999886422               23799999999   899999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +|..+++.+
T Consensus       160 ~f~~l~~~~  168 (170)
T cd04115         160 IFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHh
Confidence            999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=3e-30  Score=183.68  Aligned_cols=142  Identities=27%  Similarity=0.347  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.++.+...+  .++.+ ..+......+...+.+.+||++|+++|..++..+++.++++++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   78 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence            79999999999999999999999886554  55554 2234445566677899999999999999988899999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      |||++++++|+++..|+..+.+..    +++|+++|+||+|+.+.               ..+|++|||++|.|++++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140          79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence            999999999999999988776643    57999999999997431               23789999999999999999


Q ss_pred             HHHH
Q psy17231        150 DIGR  153 (189)
Q Consensus       150 ~i~~  153 (189)
                      ++++
T Consensus       159 ~l~~  162 (165)
T cd04140         159 ELLN  162 (165)
T ss_pred             HHHh
Confidence            9875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=4.1e-30  Score=182.44  Aligned_cols=146  Identities=25%  Similarity=0.449  Sum_probs=123.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|+|||||++++....+....  .++.+ +........++..+.+.+||+||++++..++..+++.++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   77 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDY--DPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGF   77 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCccc--CCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence            4589999999999999999999988775444  45554 33344556777778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  157 (164)
T cd04145          78 LLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH  157 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence            99999999999999999999888753  57999999999986421               23889999999999999999


Q ss_pred             HHHHHH
Q psy17231        150 DIGRQL  155 (189)
Q Consensus       150 ~i~~~i  155 (189)
                      ++++.+
T Consensus       158 ~l~~~~  163 (164)
T cd04145         158 DLVRVI  163 (164)
T ss_pred             HHHHhh
Confidence            998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=4.4e-30  Score=187.87  Aligned_cols=151  Identities=19%  Similarity=0.250  Sum_probs=124.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSSYY   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   80 (189)
                      +||+++|++|||||||++++.++.+...+  .+|.+.+.+...+.+++..+.+++|||||...+...        ....+
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~   78 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL   78 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence            58999999999999999999999886654  666665665566677888899999999997655321        23447


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccc----------------cCCceEEeeccC
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHN----------------LISSTYKTSCKT  140 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~----------------~~~~~~~~Sa~~  140 (189)
                      +.+|++++|||++++++|+.+..|+..+.+..    .++|+++|+||+|+..                ...+|++|||++
T Consensus        79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~  158 (198)
T cd04142          79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY  158 (198)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence            89999999999999999999999999887753    5799999999988732                134789999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      |.|++++|+.+++.+......
T Consensus       159 g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         159 NWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCHHHHHHHHHHHhhccCCC
Confidence            999999999999988766543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=9.4e-30  Score=180.48  Aligned_cols=147  Identities=41%  Similarity=0.645  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il   78 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence            58999999999999999999988875444  5666667767777788878899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++++.+..|+..+.... +++|+++|+||+|+.+.               ..+++++||++|.|++++|+++.
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988876 68999999999886531               23789999999999999999999


Q ss_pred             HHHHH
Q psy17231        153 RQLIL  157 (189)
Q Consensus       153 ~~i~~  157 (189)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            88754

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=1.3e-29  Score=181.10  Aligned_cols=149  Identities=34%  Similarity=0.551  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .++++.++....+...+..+.+.+||+||++.+..++..+++.++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   78 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL   78 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence            58999999999999999999998875544  5666667766777788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc--c--------------CCceEEeeccCCCCHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN--L--------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~--~--------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      |||++++++++++..|...+....     .++|+++|+||+|+..  .              ..+++++||++|.|++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            999999999999999988776654     2799999999998852  1              137999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++++.+.+..
T Consensus       159 ~~~i~~~~~~~~  170 (172)
T cd01862         159 FETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHhcc
Confidence            999999887663

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=9.3e-30  Score=180.16  Aligned_cols=144  Identities=31%  Similarity=0.570  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .++.+.++....+..++..+.+.+||+||+.++...+..+++.++++++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~   78 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998886654  6666667777777788877899999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+.+..|+..+.... .+.|+++|+||.|+.+.               ..+++++||+++.|++++|+++.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887665 36999999999887321               23789999999999999999997


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            65

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=1.4e-29  Score=179.64  Aligned_cols=146  Identities=34%  Similarity=0.563  Sum_probs=128.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.+..+....  .++.+..+....+.+++..+.+.+||+||++++...+..+++++++++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   78 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQ--ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI   78 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence            479999999999999999999999886544  666666677777888888899999999999999888899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++++....|+..+.... +..|+++++||.|+...               ..+++++||++|.|++++|+++
T Consensus        79 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          79 VVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988776 67999999999886521               2378999999999999999999


Q ss_pred             HHHH
Q psy17231        152 GRQL  155 (189)
Q Consensus       152 ~~~i  155 (189)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            8875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=8.8e-30  Score=182.67  Aligned_cols=142  Identities=26%  Similarity=0.378  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +|++++|++|+|||||++++.++.+...+  .+|. .+.....+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~--~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~   77 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEY--VPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL   77 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence            58999999999999999999988886654  4554 35555567777878899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeecc
Q psy17231         89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSCK  139 (189)
Q Consensus        89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa~  139 (189)
                      |||++++++|+.+ ..|+..+....+++|+++|+||.|+...                            ..+|+++||+
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~  157 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL  157 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999999999998 4799888766568999999999987431                            1379999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGR  153 (189)
Q Consensus       140 ~~~~i~~~~~~i~~  153 (189)
                      +|.|++++|+.++.
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=1.6e-29  Score=180.52  Aligned_cols=146  Identities=28%  Similarity=0.492  Sum_probs=125.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.++.+...+  .++.+. ........++..+.+.+||+||+++|..++..+++.+++++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~--~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v   77 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESY--DPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL   77 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence            479999999999999999999988886554  556553 33556677777889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC----------------CceEEeeccCCCCHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI----------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +|||++++++++.+..|...+.+..  .+.|+++++||.|+....                .+++++||++|.|++++|+
T Consensus        78 lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~  157 (168)
T cd04177          78 LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI  157 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHH
Confidence            9999999999999999999887643  579999999998864321                3799999999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++++.+.
T Consensus       158 ~i~~~~~  164 (168)
T cd04177         158 DLVRQII  164 (168)
T ss_pred             HHHHHHh
Confidence            9998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=5.9e-30  Score=186.69  Aligned_cols=145  Identities=25%  Similarity=0.332  Sum_probs=113.9

Q ss_pred             ceEEEEEcCCCCCHHHHHH-HHHhCCCCC---CCCCccccee-eeeEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy17231          8 EQKVILCGEYGVGKSSLFR-RYAYDTFIS---SSSRKSTLGL-DNFNKE--------YKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~-~l~~~~~~~---~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      .+||+++|++|||||||+. ++.++.+..   ...+.||++. +.+...        ...++..+.+++|||+|+++.  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 565443321   1233667652 322222        246788899999999998753  


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc-------------------------
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN-------------------------  128 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~-------------------------  128 (189)
                      +...+++.++++++|||++++++|+.+. .|+..+....++.|+++|+||+|+..                         
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4556789999999999999999999996 69998877667899999999999753                         


Q ss_pred             ---------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        129 ---------LISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                               ...+|+||||++|.||+++|+.++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                     12379999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=1.7e-29  Score=179.40  Aligned_cols=145  Identities=27%  Similarity=0.412  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD--TFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +||+++|++|||||||++++..+  .+...+  .+|.+.+......... +..+++.+||+||++.+..++..++..+|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY--LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccC--CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence            48999999999999999999865  454443  7777777766666554 567899999999999888888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +++|||++++++|+++..|+..+.....+.|+++|+||+|+...               ..+++++||++|.|++++|+.
T Consensus        79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          79 FILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            99999999999999999999998877667999999999886321               237899999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=1.5e-29  Score=190.64  Aligned_cols=144  Identities=23%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.+...+  .+|++ ++....+.+++..+.+.+|||+|++.|..++..++..+|++++
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y--~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl   77 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY--TPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL   77 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            58999999999999999999999887644  66665 5666677888888999999999999998888888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHh----------CCCCcEEEEeeccccccc----------------CCceEEeeccCCC
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTY----------AENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGE  142 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~  142 (189)
                      |||++++++|+++..|+..+...          ..+.|+|+|+||+|+...                ...++++||++|.
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            99999999999999999988753          147999999999997521                1368999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQL  155 (189)
Q Consensus       143 ~i~~~~~~i~~~i  155 (189)
                      |++++|+++....
T Consensus       158 gI~elf~~L~~~~  170 (247)
T cd04143         158 NLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=2e-29  Score=180.77  Aligned_cols=144  Identities=24%  Similarity=0.374  Sum_probs=122.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|+|||||++++..+.+...+  .++.+ +.....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   77 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   77 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence            58999999999999999999998886554  45543 3444456777878889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeecc
Q psy17231         89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSCK  139 (189)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa~  139 (189)
                      |||++++++|+.+. .|+..+....++.|+++|+||.|+...                           . .+|++|||+
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  157 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL  157 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            99999999999995 688887766678999999999886421                           1 268999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGRQL  155 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i  155 (189)
                      +|.|++++|+.+++++
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=7.9e-30  Score=182.16  Aligned_cols=141  Identities=16%  Similarity=0.332  Sum_probs=116.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+++|++|||||||++++....+..   +.+|++.++..  +..  ..+.+++||++|++++...+..++..+|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~   79 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQG   79 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc---ccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            567999999999999999999998777642   25676665532  222  35789999999999998899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++.+|+++..|+..+....  .++|+++|+||+|+...                  ...++++||++|.|++
T Consensus        80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999999988887776532  57999999999996421                  1157899999999999


Q ss_pred             HHHHHHHH
Q psy17231        146 EMFADIGR  153 (189)
Q Consensus       146 ~~~~~i~~  153 (189)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.3e-29  Score=180.57  Aligned_cols=145  Identities=26%  Similarity=0.419  Sum_probs=122.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +.||+++|++|||||||++++....+...+  .+|.+... ...+.+++..+.+.+|||+|++++...+...+.++|+++
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   77 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence            368999999999999999999998886554  55655333 345667777889999999999999888888899999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeec
Q psy17231         88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa  138 (189)
                      +|||++++++|+.+. .|+..+....++.|+++|+||+|+...                            ..++++|||
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  157 (175)
T cd01870          78 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSA  157 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecc
Confidence            999999999999984 688888776678999999999996431                            126899999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q psy17231        139 KTGEGVEEMFADIGRQL  155 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i  155 (189)
                      ++|.|++++|+++++++
T Consensus       158 ~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         158 KTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccCcCHHHHHHHHHHHh
Confidence            99999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=2.4e-29  Score=177.90  Aligned_cols=137  Identities=27%  Similarity=0.465  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++..+.|....  .++ +..+ ...+..++..+.+.+||++|++.     ..+++.+|++++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~il   71 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE--SPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIF   71 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCC--CCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEE
Confidence            48999999999999999999988886554  333 2233 45677888888999999999965     356788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc-----------------c-CCceEEeeccCCCCHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN-----------------L-ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~-----------------~-~~~~~~~Sa~~~~~i~~~~  148 (189)
                      |||++++++|+++..|+..+....  ++.|+++|+||+|+..                 . ...|++|||++|.||+++|
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence            999999999999999999998775  6789999999988531                 1 2489999999999999999


Q ss_pred             HHHHHH
Q psy17231        149 ADIGRQ  154 (189)
Q Consensus       149 ~~i~~~  154 (189)
                      +.+++.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.4e-29  Score=181.98  Aligned_cols=144  Identities=17%  Similarity=0.355  Sum_probs=119.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+++|++|||||||++++..+.+..   +.+|++.+...  +..  ..+.+.+||+||++.+..++..+++++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~---~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~   83 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVT---TIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQG   83 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            457999999999999999999998777642   36777766543  233  24789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|||+++++++++...|+..+....  ++.|+++|+||+|+.+..                  ..++++||++|.|++
T Consensus        84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999999998988876542  579999999999975321                  035689999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        146 EMFADIGRQLI  156 (189)
Q Consensus       146 ~~~~~i~~~i~  156 (189)
                      ++|+|+.+.+.
T Consensus       164 e~~~~l~~~~~  174 (175)
T smart00177      164 EGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=2.7e-29  Score=179.56  Aligned_cols=149  Identities=15%  Similarity=0.202  Sum_probs=126.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .+-+|++++|++|||||||++++.++.+. ..+  .+|++..+....+..++..+.+.+||++|++.+..++..+++.+|
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~--~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d   79 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY--SPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD   79 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccC--CCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence            35689999999999999999999999886 444  777776766666777887788999999999999888999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++++|+.+..|+..+... .++|+++|+||+|+.+.                ...++++||++|.|++++|
T Consensus        80 ~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          80 VACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence            999999999999999999998865432 47999999999997421                1146999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +.+.+.+.+
T Consensus       159 ~~l~~~~~~  167 (169)
T cd01892         159 TKLATAAQY  167 (169)
T ss_pred             HHHHHHhhC
Confidence            999988763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=182.42  Aligned_cols=151  Identities=30%  Similarity=0.463  Sum_probs=127.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||||+++|.+..+. .  ..++.+.++....+..++..+.+.+||+||++++..++..+++.+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-D--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-C--cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            45789999999999999999999988763 2  35677767767777778878899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQ-HLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +++|||++++++|+.+.. |...+....  .+.|+++|+||.|+...               ...|+++||++|.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999965 665555433  46899999999987422               236899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++.+.+.+..
T Consensus       169 ~~~l~~~~~~~~  180 (211)
T PLN03118        169 FEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHhhh
Confidence            999999997654

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=4.8e-29  Score=176.59  Aligned_cols=144  Identities=36%  Similarity=0.573  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .++.+.++....+...+..+.+.+||+||++.+......+++.+|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDL--AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc--CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence            58999999999999999999988875544  5666667666666777778899999999999998888999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++|+.+..|+..+....  .+.|+++|+||+|+...              ..+++++||++|.|+++++++++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999999888764  68999999999987521              23799999999999999999988


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.2e-29  Score=181.94  Aligned_cols=146  Identities=16%  Similarity=0.354  Sum_probs=120.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+++|++|||||||++++..+.+..   +.+|++.+..  .+..  ..+.+++||+||++++..++..+++++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~   87 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc---ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            456899999999999999999998877642   3677776543  2333  34789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~  145 (189)
                      +|+|||+++++++++...|+..+....  +++|++||+||.|+.....                  .++++||++|+|++
T Consensus        88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999999988888775432  5799999999998653211                  24579999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999888654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=3.2e-29  Score=177.47  Aligned_cols=138  Identities=15%  Similarity=0.367  Sum_probs=114.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|.+|||||||++++..+.+..   +.+|++.+...  +..  ..+.+.+||+||++++...+..+++++|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            589999999999999999998877753   36777765532  333  35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~  148 (189)
                      |||++++.+|++...|+..+....  ..+|+++++||+|+....                  ..++++||++|.|++++|
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999999998888776432  469999999999974321                  135789999999999999


Q ss_pred             HHHHH
Q psy17231        149 ADIGR  153 (189)
Q Consensus       149 ~~i~~  153 (189)
                      +++.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=9e-29  Score=179.05  Aligned_cols=152  Identities=16%  Similarity=0.385  Sum_probs=125.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +.+||+++|++|||||||++++....+...   .+|.+.+.....+.. ++..+.+.+||+||++++...+..+++.+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   78 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDG   78 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCE
Confidence            468999999999999999999998877532   466665665554443 3356889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCCH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEGV  144 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~i  144 (189)
                      +++|+|++++++++.+..|+..+....  .++|+++|+||+|+.+..                   .+++++||++|.|+
T Consensus        79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999999999999988888877653  579999999999864310                   14789999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy17231        145 EEMFADIGRQLILSNRS  161 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~~  161 (189)
                      +++|+++.+.+.+.++.
T Consensus       159 ~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         159 QEGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999998766544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.2e-28  Score=181.23  Aligned_cols=152  Identities=28%  Similarity=0.457  Sum_probs=134.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .+..+|++++|++|||||||++++..+.+...+  .+|++.++....+..++..+.+.+||++|++++..++..++..++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            367899999999999999999999888876555  778888887777777888899999999999999888899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++++|||++++.+|..+..|+..+.....+.|+++++||+|+...             ...++++||++|.|++++|.++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i  163 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999999998877778999999999886421             1368999999999999999999


Q ss_pred             HHHHHHh
Q psy17231        152 GRQLILS  158 (189)
Q Consensus       152 ~~~i~~~  158 (189)
                      ++.+...
T Consensus       164 a~~l~~~  170 (215)
T PTZ00132        164 ARRLTND  170 (215)
T ss_pred             HHHHhhc
Confidence            9988765

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=1.7e-28  Score=173.50  Aligned_cols=145  Identities=32%  Similarity=0.571  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|+|||||++++....+....  .++.+.......+...+..+.+.+||+||++.+...+..++..++++++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   78 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence            58999999999999999999988875543  4444445555556666777889999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||+++.|++++|+++.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999888776 47999999999986532               23689999999999999999998


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0088|consensus

Probab=99.97  E-value=6.7e-30  Score=173.47  Aligned_cols=156  Identities=29%  Similarity=0.450  Sum_probs=137.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      .+.-.+|++++|..-||||||+-|+..++|....  ..|+.-.+..+.+.+.+....+.||||+|+++|..+-+.++++.
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH--lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKH--LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhh--HHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            3456899999999999999999999999996554  77877778888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +++++|||++|+++|+.++.|..+++... ..+-+++|+||.|+...               ...|+++||+.+.||.++
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            99999999999999999999999998876 56889999999886432               348899999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy17231        148 FADIGRQLILSNRS  161 (189)
Q Consensus       148 ~~~i~~~i~~~~~~  161 (189)
                      |+.+....++..+.
T Consensus       167 Fe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  167 FESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99998877766543

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=1.8e-28  Score=174.88  Aligned_cols=148  Identities=35%  Similarity=0.541  Sum_probs=127.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...++++++|++|||||||++++....+....  .++++.++....+.+.+..+.+.+||+||++.+...+..++..+|+
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   82 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA   82 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            34589999999999999999999988775544  6677767777777888888899999999999999888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+.... .+.|+++|+||.|+...               ...++++||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            999999999999999999998887765 47999999999997421               13689999999999999999


Q ss_pred             HHHHHH
Q psy17231        150 DIGRQL  155 (189)
Q Consensus       150 ~i~~~i  155 (189)
                      ++.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081|consensus

Probab=99.97  E-value=1.1e-30  Score=177.34  Aligned_cols=163  Identities=29%  Similarity=0.423  Sum_probs=140.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC---------CeEEEEEEEeCCCccccccch
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD---------DRSIQMQLWDTGGMERVASIT   76 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~   76 (189)
                      ..-+|.+.+|++|||||||+.++..++|...-  ..|+|+++..+.+-++         +..+.+++|||+|+++|+++.
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qF--IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQF--ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCccccee--EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            45678999999999999999999999996554  7888888887755442         346789999999999999999


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK  139 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~  139 (189)
                      .++++++-+++++||+++.+||-+++.|+.++..+.  +++.+++++||+|+...               .-||||+||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            999999999999999999999999999999988775  88999999999886532               2399999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhhhhhhhhcCC
Q psy17231        140 TGEGVEEMFADIGRQLILSNRSRLELQTMGA  170 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~~~~~~~~~~~~~~~  170 (189)
                      +|.|+++..+.++..+.++.....+....+.
T Consensus       165 tg~Nv~kave~LldlvM~Rie~~v~~s~~p~  195 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQCVEKSEIPL  195 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            9999999999999999988777666655544

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=1.3e-28  Score=183.07  Aligned_cols=149  Identities=23%  Similarity=0.310  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc-CCcEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK-FAEAA   86 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~   86 (189)
                      +||+++|++|||||||+++|..+.+. ..+  .++.+.+....++.+++....+.+||++|++.  .....++. .+|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~i   76 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAY--DASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAF   76 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCc--CCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEE
Confidence            58999999999999999999887775 333  45554466667777888889999999999972  23345566 89999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++|+.+..|+..+....  .++|+|+|+||+|+.+.               ..+|+++||++|.|++++|+
T Consensus        77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~  156 (221)
T cd04148          77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLE  156 (221)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888764  57999999999997321               23789999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy17231        150 DIGRQLILSNRS  161 (189)
Q Consensus       150 ~i~~~i~~~~~~  161 (189)
                      ++++.+......
T Consensus       157 ~l~~~~~~~~~~  168 (221)
T cd04148         157 GIVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHHhhhcc
Confidence            999988755433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=8.7e-29  Score=178.93  Aligned_cols=146  Identities=15%  Similarity=0.329  Sum_probs=119.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||++++..+.+.. +  .+|++.+..  .+..  ..+.+.+||+||++++...+..+++.+|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~--~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~   87 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-T--IPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNG   87 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            456899999999999999999998877753 2  567765543  2333  34789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++++....++..+....  .++|+++|+||.|+.+..                  ..++++||++|.|++
T Consensus        88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999999988888775432  579999999999975321                  035689999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.++
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2.1e-28  Score=177.67  Aligned_cols=150  Identities=24%  Similarity=0.456  Sum_probs=124.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +.|++++|++|+|||||++++..+.+....  .++.... ....+..++....+.+||++|++.+.......+..+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l   77 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEY--HPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL   77 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence            469999999999999999999988775543  4454323 2345566777788999999999988877777889999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc--------------------------CCceEEeeccC
Q psy17231         88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL--------------------------ISSTYKTSCKT  140 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------------~~~~~~~Sa~~  140 (189)
                      +|||++++++|+.+. .|+..+....++.|+++|+||.|+...                          ..+||+|||++
T Consensus        78 lv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  157 (187)
T cd04129          78 IGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALT  157 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCC
Confidence            999999999999996 699998877678999999999997431                          13799999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |.|++++|+++++.+...++
T Consensus       158 ~~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         158 GEGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCCHHHHHHHHHHHHhcccC
Confidence            99999999999988866544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=1.4e-28  Score=175.01  Aligned_cols=144  Identities=23%  Similarity=0.424  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-ccchHHHhcCCcEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-ASITSSYYKFAEAAIL   88 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~   88 (189)
                      ||+++|++|||||||++++....+...+  .++.+ ......+..++..+.+.+||+||++.+ ......+++.+|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   77 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEY--DPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL   77 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcccccc--CCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence            6899999999999999999988775544  44443 233455677788889999999998853 4456778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCC-CCHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG-EGVEEMFA  149 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~-~~i~~~~~  149 (189)
                      |||++++++|+.+..|+..+....   .++|+++|+||+|+.+.               ..+|+++||++| .|++++|+
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~  157 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence            999999999999999998887753   47999999999986321               248899999999 59999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++++.+.
T Consensus       158 ~l~~~~~  164 (165)
T cd04146         158 ELCREVR  164 (165)
T ss_pred             HHHHHHh
Confidence            9988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0091|consensus

Probab=99.96  E-value=2e-29  Score=171.93  Aligned_cols=154  Identities=30%  Similarity=0.479  Sum_probs=134.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ...++++++|++-+|||+|+++|..+++..-.  .||+|++++...+.. .+..+++++|||+|+++|+++...++++.-
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaels--dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELS--DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccC--CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            35689999999999999999999999997766  899999998876655 566899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcE-EEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~  146 (189)
                      ++++|||++|+++|+.+..|+.+...+.  |.+++ .+||+|+|+...               ...|+|+||++|.|++|
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            9999999999999999999999988776  45554 589999886422               34899999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy17231        147 MFADIGRQLILSNRS  161 (189)
Q Consensus       147 ~~~~i~~~i~~~~~~  161 (189)
                      .|..+.+.+......
T Consensus       164 AF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999988876544

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.8e-28  Score=175.32  Aligned_cols=142  Identities=19%  Similarity=0.394  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++.+..+..   +.+|++.+..  .+..  ..+.+.+||+||+.++...+..+++.++++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ---PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence            68999999999999999999886642   3667665553  2333  347899999999999998999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC---------------C----ceEEeeccCCCCHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI---------------S----STYKTSCKTGEGVEEMF  148 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~---------------~----~~~~~Sa~~~~~i~~~~  148 (189)
                      +|++++++++++..|+..+.+..  .+.|+++|+||+|+.+..               .    .+++|||++|.||+++|
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999999999999887643  468999999998864210               1    47789999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++++.+...
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=6.6e-28  Score=170.90  Aligned_cols=145  Identities=32%  Similarity=0.496  Sum_probs=124.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++....+....  .++.+ +........++..+.+.+||+||+.++...+..+++.++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcccc--CCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence            58999999999999999999988876544  44443 3344555677778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++|+++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL  157 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999888863  57999999999997541               2378999999999999999999


Q ss_pred             HHHHH
Q psy17231        152 GRQLI  156 (189)
Q Consensus       152 ~~~i~  156 (189)
                      .+.+.
T Consensus       158 ~~~~~  162 (164)
T cd04139         158 VREIR  162 (164)
T ss_pred             HHHHH
Confidence            88775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0097|consensus

Probab=99.96  E-value=1.9e-28  Score=163.74  Aligned_cols=153  Identities=29%  Similarity=0.512  Sum_probs=138.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+|.+|+|+-|+|||+|+..|..++|...-  .+|+|+++.+..+...++++++++||++|+++|+.....+++++.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            45789999999999999999999999997655  7899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      .+.|||++.+.++..+..|+...+... ++..+++++||+|+....               -.|.++||++|.|+++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            999999999999999999999988876 889999999998865321               2789999999999999998


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      ...+++.+..+
T Consensus       167 e~akkiyqniq  177 (215)
T KOG0097|consen  167 ETAKKIYQNIQ  177 (215)
T ss_pred             HHHHHHHHhhh
Confidence            88888877654

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=4.4e-28  Score=172.73  Aligned_cols=145  Identities=22%  Similarity=0.283  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      .||+++|++|||||||+++|..+.+....  ..+.  ..........+..+.+.+||+||++++...+...+..++++++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il   76 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV--PRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccC--CCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence            48999999999999999999998886543  2221  1222333455667899999999998887777778899999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccCCCCHHHHH
Q psy17231         89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      |||++++++|+.+. .|+..+.....+.|+++|+||+|+.+.                   ..++++|||++|.|++++|
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence            99999999999984 688877766568999999999886421                   1378999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +.+.+.+.+
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2.2e-28  Score=174.09  Aligned_cols=137  Identities=17%  Similarity=0.268  Sum_probs=114.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF   90 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   90 (189)
                      |+++|++|||||||+++|.+..+...+  .+|++.+.    ..++...+.+.+||++|++++..++..+++.+|++++||
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~--~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~   75 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESV--VPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV   75 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccc--cccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            789999999999999999988775444  67776543    223344678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccC------CCCHH
Q psy17231         91 SLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKT------GEGVE  145 (189)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~------~~~i~  145 (189)
                      |++++.++...+.|+..+....+++|+++|+||.|+...                   ...++++||++      ++|++
T Consensus        76 D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          76 DSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999999888765578999999999885431                   12578888887      99999


Q ss_pred             HHHHHHHH
Q psy17231        146 EMFADIGR  153 (189)
Q Consensus       146 ~~~~~i~~  153 (189)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=1e-27  Score=175.61  Aligned_cols=146  Identities=28%  Similarity=0.436  Sum_probs=123.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++....+...+  .++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv   77 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKY--RRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC--CCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence            6899999999999999999998876543  44443 44455677777778999999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ||++++++|+.+..|+..+....  .++|+++|+||.|+.+.                 ..+++++||++|.|++++|++
T Consensus        78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  157 (198)
T cd04147          78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKE  157 (198)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999999888765  47999999999887431                 136799999999999999999


Q ss_pred             HHHHHHHh
Q psy17231        151 IGRQLILS  158 (189)
Q Consensus       151 i~~~i~~~  158 (189)
                      +++.+...
T Consensus       158 l~~~~~~~  165 (198)
T cd04147         158 LLRQANLP  165 (198)
T ss_pred             HHHHhhcc
Confidence            99877633

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=4.7e-28  Score=173.72  Aligned_cols=142  Identities=18%  Similarity=0.316  Sum_probs=116.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ++..+||+++|++|||||||++++.+..+.   ...+|++...  ..+..+  .+.+.+||+||++.+...+..+++.++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~---~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID---TISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC---CcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            456789999999999999999999977542   2256665433  333444  468899999999988888899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++.+|++...|+..+....  .++|+++|+||+|+.+.                  ..+++++||++|.|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999999999988888876532  68999999999986421                  126999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        145 EEMFADIGR  153 (189)
Q Consensus       145 ~~~~~~i~~  153 (189)
                      +++|++++.
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00154 Rab Rab family

Probab=99.96  E-value=1.4e-27  Score=167.72  Aligned_cols=142  Identities=42%  Similarity=0.661  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.+..+....  .+|.+.+.....+..++....+.+||+||+..+...+..+++.++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCcc--CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence            58999999999999999999999887664  6677777777777777777899999999999998899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccc--cc-------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCH--NL-------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~--~~-------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |+|++++++++.+..|+..+.... ...|+++++||+|+.  ..             ..+++++||+++.|++++|+++.
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999988876 679999999999984  11             24899999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=2.3e-27  Score=169.41  Aligned_cols=142  Identities=28%  Similarity=0.477  Sum_probs=118.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||+++|.+..+...+  .++.. +.........+..+.+.+||+||++++.......++.+|++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY--VPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence            58999999999999999999999885444  44433 4444556667778899999999999888888888899999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccccC--------------------------C-ceEEeeccC
Q psy17231         89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNLI--------------------------S-STYKTSCKT  140 (189)
Q Consensus        89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~~--------------------------~-~~~~~Sa~~  140 (189)
                      |||++++++|... ..|+..+.....+.|+++|+||+|+....                          . +|+++||++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  157 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT  157 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence            9999999999877 56887777766789999999998853221                          1 789999999


Q ss_pred             CCCHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGR  153 (189)
Q Consensus       141 ~~~i~~~~~~i~~  153 (189)
                      |.|++++|+++++
T Consensus       158 ~~gi~~l~~~i~~  170 (171)
T cd00157         158 QEGVKEVFEEAIR  170 (171)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0083|consensus

Probab=99.96  E-value=8.8e-30  Score=168.38  Aligned_cols=147  Identities=35%  Similarity=0.520  Sum_probs=131.8

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231         12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS   91 (189)
Q Consensus        12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   91 (189)
                      +++|++++|||+|+-|+..+-|... ...+|+|+++-.+.+..++.++++++|||+|+++|++....+++++|+.+++||
T Consensus         1 mllgds~~gktcllir~kdgafl~~-~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd   79 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAG-NFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD   79 (192)
T ss_pred             CccccCccCceEEEEEeccCceecC-ceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence            3789999999999999987777544 347889999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231         92 LDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      ++++.||++.+.|+.++.++. ....+++++||||+...               ..||+|+||++|.|++..|-.+.+.+
T Consensus        80 iankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   80 IANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            999999999999999999987 67889999999997432               23999999999999999999998888


Q ss_pred             HHhh
Q psy17231        156 ILSN  159 (189)
Q Consensus       156 ~~~~  159 (189)
                      .+..
T Consensus       160 ~k~~  163 (192)
T KOG0083|consen  160 KKLK  163 (192)
T ss_pred             HHhc
Confidence            7654

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=8.2e-28  Score=170.25  Aligned_cols=139  Identities=16%  Similarity=0.287  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      +|+++|++|||||||+++|.+..+.. ..+.+|++.....  +..  ..+.+.+||+||++++...+..+++.++++++|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQS-QIIVPTVGFNVES--FEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCc-ceecCccccceEE--EEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence            58999999999999999999875321 2235666644322  222  357889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~  147 (189)
                      +|++++.++..+..|+..+....    .++|+++|+||+|+.+..                  ..++++||++|.|++++
T Consensus        76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~  155 (162)
T cd04157          76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEG  155 (162)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence            99999999999988888776532    479999999998864321                  13789999999999999


Q ss_pred             HHHHHH
Q psy17231        148 FADIGR  153 (189)
Q Consensus       148 ~~~i~~  153 (189)
                      |+++.+
T Consensus       156 ~~~l~~  161 (162)
T cd04157         156 VQWLQA  161 (162)
T ss_pred             HHHHhc
Confidence            999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0395|consensus

Probab=99.96  E-value=1.9e-27  Score=172.86  Aligned_cols=151  Identities=27%  Similarity=0.431  Sum_probs=136.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+|++++|.+|||||+|+.+|..+.|...+  .||++ +.+.+.+.+++..+.+.++||+|+++|..+...+++..+++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y--~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF   78 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY--DPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF   78 (196)
T ss_pred             CceEEEEECCCCCCcchheeeeccccccccc--CCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence            5689999999999999999999999998776  77876 88888899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++||+++++.||+.+..++.++.+..  ..+|+++||||+|+..               ..++|+|+||+.+.+++++|.
T Consensus        79 ~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen   79 LLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence            99999999999999999999995543  5689999999999865               245899999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      .+.+.+.....
T Consensus       159 ~L~r~~~~~~~  169 (196)
T KOG0395|consen  159 ELVREIRLPRE  169 (196)
T ss_pred             HHHHHHHhhhc
Confidence            99999887443

>KOG0393|consensus

Probab=99.96  E-value=1.2e-28  Score=176.08  Aligned_cols=152  Identities=26%  Similarity=0.402  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +..+|++++|+.++|||+|+-.+..+.|+..+  .||+. +.+...+..+ ++.+.+.+|||+|+++|+.+++..+.++|
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~y--vPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~td   78 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEY--VPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTD   78 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccc--cCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCC
Confidence            45689999999999999999999999998877  77765 6667778884 99999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccccC----------------------------CceEE
Q psy17231         85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------------------SSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------------------~~~~~  135 (189)
                      ++++||++.++++|+++ .+|+.++.++.++.|+|+||+|.|+....                            ..|+|
T Consensus        79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E  158 (198)
T KOG0393|consen   79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE  158 (198)
T ss_pred             EEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence            99999999999999997 89999999999999999999998876321                            27899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |||++..|+.++|+..++..+...+
T Consensus       159 cSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  159 CSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             ehhhhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999999887653

>cd00876 Ras Ras family

Probab=99.96  E-value=3.5e-27  Score=166.45  Aligned_cols=142  Identities=27%  Similarity=0.433  Sum_probs=121.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++....+....  .++.+ +.....+...+..+.+++||+||+..+...+...+..++++++|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   77 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEY--DPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV   77 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCc--CCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence            6899999999999999999988765544  44544 55555666777778999999999999888889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      ||+++++++.++..|...+....  ...|+++|+||+|....               ..+++++||+++.|++++|+++.
T Consensus        78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  157 (160)
T cd00876          78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLV  157 (160)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999888876  38999999999886531               23899999999999999999998


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       158 ~~  159 (160)
T cd00876         158 RE  159 (160)
T ss_pred             hh
Confidence            75

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=8.2e-27  Score=168.16  Aligned_cols=148  Identities=24%  Similarity=0.330  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      .||+++|++|||||||++++....+....  .++.+..+ .......+..+.+.+||+||++++...+..++..++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   78 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--YPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL   78 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccc--CcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence            68999999999999999999988875444  44543232 3445566667889999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      |||+++.++++.+..|+..+.+..  .+.|+++|+||+|+...               ..+++++||+++.|++++|+++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  158 (180)
T cd04137          79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELL  158 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999998887764  57899999999996521               2378999999999999999999


Q ss_pred             HHHHHHhh
Q psy17231        152 GRQLILSN  159 (189)
Q Consensus       152 ~~~i~~~~  159 (189)
                      .+.+....
T Consensus       159 ~~~~~~~~  166 (180)
T cd04137         159 IEEIEKVE  166 (180)
T ss_pred             HHHHHHhc
Confidence            98886554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=4.1e-27  Score=166.47  Aligned_cols=138  Identities=20%  Similarity=0.391  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      +|+++|++|||||||++++....+...   .+|.+.+..  .+... ..+.+.+||+||+..+...+..++..++++++|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~---~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v   74 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV   74 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc---cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            589999999999999999998887532   556654432  23332 347899999999999888889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------C-----CceEEeeccCCCCHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------I-----SSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~-----~~~~~~Sa~~~~~i~~~~  148 (189)
                      +|++++.++.....|+..+....  .+.|+++|+||+|+...              .     .++++|||++|.|++++|
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999999999988888876543  57999999999996321              0     148899999999999999


Q ss_pred             HHHHH
Q psy17231        149 ADIGR  153 (189)
Q Consensus       149 ~~i~~  153 (189)
                      +++.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=3.3e-27  Score=168.43  Aligned_cols=137  Identities=17%  Similarity=0.257  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      +|+++|++|||||||++++.+. +...  +.+|++...  ..+...  .+.+++||+||+..+..++..+++.++++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~--~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKK--VAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCcc--ccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence            4899999999999999999866 4333  367776543  334443  47889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC---------------------CceEEeeccCC-----
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI---------------------SSTYKTSCKTG-----  141 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~---------------------~~~~~~Sa~~~-----  141 (189)
                      ||++++.+++++..|+..+....  .++|+++|+||+|+.+..                     ..+++|||++|     
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            99999999999999999887653  579999999998854321                     25677999998     


Q ss_pred             -CCHHHHHHHHHH
Q psy17231        142 -EGVEEMFADIGR  153 (189)
Q Consensus       142 -~~i~~~~~~i~~  153 (189)
                       .|+++.|+|+..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=5e-27  Score=168.60  Aligned_cols=140  Identities=23%  Similarity=0.385  Sum_probs=115.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.++|+++|++|+|||||++++..+.+..   +.+|++.+..  .+..+  ...+.+||+||++.+...+..+++.+|++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   86 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAV   86 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            46899999999999999999999887753   2566654443  23333  46899999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEE  146 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~  146 (189)
                      ++|+|+++++++.....++..+....  .++|+++++||+|+....                  .+++++||++|.|+++
T Consensus        87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999999988888888776543  579999999998864310                  1479999999999999


Q ss_pred             HHHHHHH
Q psy17231        147 MFADIGR  153 (189)
Q Consensus       147 ~~~~i~~  153 (189)
                      +|+++.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=8.6e-27  Score=167.47  Aligned_cols=144  Identities=25%  Similarity=0.420  Sum_probs=121.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|+.|+|||||++++..+....   ..||.|++....  .+.+  +.+.+||.+|+..+...|..++..++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i--~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~   83 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEI--KYKG--YSLTIWDLGGQESFRPLWKSYFQNAD   83 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEE--EETT--EEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc---cCccccccccee--eeCc--EEEEEEeccccccccccceeeccccc
Confidence            3678999999999999999999999766433   477777665443  3343  67899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCC
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEG  143 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~  143 (189)
                      ++|+|+|.++.+.+.+....+..+....  .++|+++++||+|..+..                   ..++.|||.+|.|
T Consensus        84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   84 GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             eeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999999999988888887754  689999999998865431                   1578899999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQL  155 (189)
Q Consensus       144 i~~~~~~i~~~i  155 (189)
                      +.+.++|+.+++
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.2e-26  Score=163.98  Aligned_cols=137  Identities=20%  Similarity=0.383  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++....+..   ..+|++.+..  .+..  ....+++||+||++.+...+..++..++++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            68999999999999999998777643   2566655543  2333  346899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +|++++.++.....++..+.+..  .+.|+++|+||+|+.+..                  .+++++||++|.|++++|+
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99999988887767666554432  579999999999964211                  1489999999999999999


Q ss_pred             HHHH
Q psy17231        150 DIGR  153 (189)
Q Consensus       150 ~i~~  153 (189)
                      ++++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=8.7e-27  Score=165.91  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFI----SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +|+++|++|||||||++++......    ....+.+|++.+..  .+.++  ...+.+||+||++.+...+..++..+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999764321    11223455544443  33443  4688999999999999889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------------CCceEEeeccCCCC
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~~  143 (189)
                      +++|+|+++++++.....|+..+.+..  .+.|+++++||+|+...                    ..+++++||++|.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            999999999999999988888877643  57999999999986432                    12689999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        144 VEEMFADIGR  153 (189)
Q Consensus       144 i~~~~~~i~~  153 (189)
                      ++++++++..
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=2.3e-26  Score=168.21  Aligned_cols=118  Identities=26%  Similarity=0.400  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-----CeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-----DRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      +||+++|++|||||||++++..+.+...+  .+|++.++..+.+.++     +..+.+++||++|+++|..++..+++.+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~--~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a   78 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRP--SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV   78 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCC--CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence            58999999999999999999999887654  7788877766666553     4678999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--------------------CCCcEEEEeecccccc
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--------------------ENAKIFLCGNNEQCHN  128 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~p~ivv~nK~d~~~  128 (189)
                      +++++|||++++++|+++..|+..+....                    .++|+|+||||.|+..
T Consensus        79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            99999999999999999999999997631                    4689999999999743

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1.2e-26  Score=168.62  Aligned_cols=143  Identities=17%  Similarity=0.301  Sum_probs=116.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+..||+++|++|||||||++++.+..+. .  +.+|.+...  ..+.+++  ..+.+||+||+..+...+..+++.++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~--~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad   88 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-Q--HVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVD   88 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCC
Confidence            456899999999999999999999987763 2  245554332  3344443  57899999999988888899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------------------CCce
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------------------ISST  133 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------------------~~~~  133 (189)
                      ++++|+|+++.++++....|+..+.+..  .+.|+++++||+|+...                             ...+
T Consensus        89 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          89 GIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            9999999999999998888888887643  57999999999886421                             1258


Q ss_pred             EEeeccCCCCHHHHHHHHHHH
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      ++|||++|.|++++|+++.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.3e-26  Score=162.33  Aligned_cols=137  Identities=15%  Similarity=0.364  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||++++.+..+.   ...+|.+.....  +.+.  ...+.+||+||++.+...+..++..++++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence            6899999999999999999988742   225555544332  3333  46889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ||+++++++.....|+..+....  .+.|+++|+||+|+...                  ..+++++||++|.|++++|+
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            99999999999988888877643  58999999999997431                  12689999999999999999


Q ss_pred             HHHH
Q psy17231        150 DIGR  153 (189)
Q Consensus       150 ~i~~  153 (189)
                      ++..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9865

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=8.8e-26  Score=163.51  Aligned_cols=142  Identities=15%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||++++.+..+.. .  .+|.+...  ..+...  .+++.+||+||+..+...+..++..+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~--~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~   87 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-H--QPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNG   87 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-c--CCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            456999999999999999999999876532 1  34443322  223333  3688999999999988899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------CCceEEeec
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------ISSTYKTSC  138 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------~~~~~~~Sa  138 (189)
                      +++|+|++++++++....++..+....  .++|+++|+||+|+...                         ...+++|||
T Consensus        88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       88 IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999999999988888776532  57999999999885421                         114899999


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy17231        139 KTGEGVEEMFADIGRQ  154 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~  154 (189)
                      ++|.|++++++|+.++
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=3e-25  Score=155.95  Aligned_cols=137  Identities=20%  Similarity=0.371  Sum_probs=113.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF   90 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   90 (189)
                      |+++|++|||||||++++.+..+...+  .+|.+.+...  ....  .+.+.+||+||++.+...+..++..++++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT--IPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc--cCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence            789999999999999999998886555  5666655443  2333  368999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHHH
Q psy17231         91 SLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      |+++..++.....|+..+....  .++|+++|+||.|+.+..                  .+++++||++|.|+++++++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9999999988888888776542  579999999998864221                  26799999999999999999


Q ss_pred             HHH
Q psy17231        151 IGR  153 (189)
Q Consensus       151 i~~  153 (189)
                      +.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4252|consensus

Probab=99.94  E-value=3.2e-27  Score=163.62  Aligned_cols=153  Identities=29%  Similarity=0.444  Sum_probs=138.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      -+|++|+|..++||||+|++++.+-|...+  ..|+|.++....+....+.+...+||++|+++|+.+..++++++.+.+
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdy--kktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhcccccccc--ccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            589999999999999999999988886555  788898998888888777888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      +||+.+|+.+|+.+..|++.+......+|.++|-||.|+..               +...++-+|++...|+.++|.+++
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            99999999999999999999999888999999999977532               234889999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy17231        153 RQLILSNRSR  162 (189)
Q Consensus       153 ~~i~~~~~~~  162 (189)
                      .++.+..+..
T Consensus       178 eK~~q~~kq~  187 (246)
T KOG4252|consen  178 EKLTQQKKQS  187 (246)
T ss_pred             HHHHHHHHHH
Confidence            9988876653

>KOG0073|consensus

Probab=99.94  E-value=7e-25  Score=149.76  Aligned_cols=146  Identities=20%  Similarity=0.323  Sum_probs=123.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|..|+||||++++|.+.+.   ....||.|+++.+..+  +  .+++++||.+|+..++..|..++..+|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~--~--~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEY--K--GYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEe--c--ceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            4489999999999999999999998773   3337787777655433  2  4789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCCH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEGV  144 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~i  144 (189)
                      .|+|+|.+|+..+++....+..+....  .+.|++|++||.|+.+..                   .+.+.||+.+|+++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            999999999999998888777776643  679999999998876332                   27799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy17231        145 EEMFADIGRQLILS  158 (189)
Q Consensus       145 ~~~~~~i~~~i~~~  158 (189)
                      .+.++|+...+..+
T Consensus       167 ~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988763

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=2.6e-25  Score=170.62  Aligned_cols=121  Identities=24%  Similarity=0.351  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-------------CeEEEEEEEeCCCcccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-------------DRSIQMQLWDTGGMERV   72 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~   72 (189)
                      ...+||+++|+.|||||||+++|..+.+...+  .+|+|.++..+.+.++             +..+.++|||++|++.|
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~--~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARP--PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCccccc--CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45799999999999999999999998886544  7888888776666654             24688999999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-------------CCCcEEEEeecccccc
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------------ENAKIFLCGNNEQCHN  128 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~d~~~  128 (189)
                      ..++..+++.++++|+|||++++++|+.+..|+..+....             .++|++||+||+|+..
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            9999999999999999999999999999999999998752             2589999999999743

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=7.2e-25  Score=156.91  Aligned_cols=141  Identities=18%  Similarity=0.349  Sum_probs=113.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||++++.+..+..   ..++.+.+..  .+...+  ..+.+||+||+..+...+..+++.+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            557999999999999999999999876532   2455554432  333443  578999999998888888888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|+|+++..++.....|+..+....  .++|+++++||+|.....                  .+++++||++|.|++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            999999999999988888877766543  579999999998864321                  136799999999999


Q ss_pred             HHHHHHHH
Q psy17231        146 EMFADIGR  153 (189)
Q Consensus       146 ~~~~~i~~  153 (189)
                      ++|+|+++
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=6.4e-25  Score=158.00  Aligned_cols=143  Identities=21%  Similarity=0.204  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC--CCC---CCCCcc------cceeeeeEEEE--EE---CCeEEEEEEEeCCCccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT--FIS---SSSRKS------TLGLDNFNKEY--KV---DDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~--~~~---~~~~~~------t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~   73 (189)
                      +|+++|.+|+|||||+++|.+..  +..   ...+.+      +.+.++.....  .+   ++..+.+++|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742  100   001111      22333333222  22   5567889999999999999


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------C---CceEEee
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I---SSTYKTS  137 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~---~~~~~~S  137 (189)
                      ..+..+++.+|++++|+|+++..++.....|.... .  .++|+++|+||+|+.+.             .   ..++++|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence            88889999999999999999877666666554322 2  37899999999996421             0   1489999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i  155 (189)
                      |++|.|++++|+++.+.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=3.3e-24  Score=152.75  Aligned_cols=143  Identities=19%  Similarity=0.208  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSY   79 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~   79 (189)
                      .+|+++|++|+|||||+++|.+..+.....+..|.  +........  ....+.+|||||+.+...         .....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~--~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTK--SLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccc--ceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence            37999999999999999999988764322112222  222222222  246899999999843111         00111


Q ss_pred             hcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCH
Q psy17231         80 YKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i  144 (189)
                      ...+|++++|+|++++.++  +....|+..+.....+.|+++|+||+|+...             ..+++++||++|.|+
T Consensus        77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCH
Confidence            2336899999999987653  5666788877665457999999999886321             237899999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        145 EEMFADIGRQL  155 (189)
Q Consensus       145 ~~~~~~i~~~i  155 (189)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0070|consensus

Probab=99.92  E-value=1.3e-24  Score=151.86  Aligned_cols=146  Identities=20%  Similarity=0.394  Sum_probs=128.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.++|+++|-.++||||++++|..+++...   .||+|++.....+.    .+.|.+||.+|+..++.+|..+++..+
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCc
Confidence            45689999999999999999999998887544   88888777665554    478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i  144 (189)
                      ++|+|+|.+|++.+.+.+..+..+....  .+.|+++.+||+|+++...                  .+..|||.+|+|+
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            9999999999999999999998888876  5899999999999765532                  5577999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        145 EEMFADIGRQLIL  157 (189)
Q Consensus       145 ~~~~~~i~~~i~~  157 (189)
                      .|.++|+.+.+.+
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=154.43  Aligned_cols=154  Identities=30%  Similarity=0.458  Sum_probs=128.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +..+||+++|++|||||||+++|....+...+  .+|++..+...........+++.+|||+|++++..++..++.++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~   80 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGY--PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANG   80 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccC--CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCE
Confidence            34589999999999999999999999987666  5666555555555555547889999999999999999999999999


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC------------------------------Cce
Q psy17231         86 AILVFSLDN-AASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI------------------------------SST  133 (189)
Q Consensus        86 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~------------------------------~~~  133 (189)
                      +++|||.++ ..+++....|...+.... .+.|+++|+||.|+....                              ..+
T Consensus        81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (219)
T COG1100          81 ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL  160 (219)
T ss_pred             EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence            999999999 556666689998988876 479999999998865431                              147


Q ss_pred             EEeecc--CCCCHHHHHHHHHHHHHHhhhh
Q psy17231        134 YKTSCK--TGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       134 ~~~Sa~--~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      +++|++  ++.++.++|..+++.+.+....
T Consensus       161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         161 LETSAKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             eEeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            999999  9999999999999998765443

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=8.2e-24  Score=155.52  Aligned_cols=147  Identities=22%  Similarity=0.198  Sum_probs=107.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--c------hH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--I------TS   77 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~------~~   77 (189)
                      .+.++|+++|++|||||||++++.+..+.....+.+|.  +.....+.+.+. ..+.+|||||..+...  .      ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL--DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec--cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            34589999999999999999999988754443334444  333333444332 3789999999743211  0      01


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc----------cCCceEEeeccCCCCHHH
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN----------LISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~----------~~~~~~~~Sa~~~~~i~~  146 (189)
                      ..+..+|++++|+|++++.++.....|...+.... .++|+++|+||+|+.+          ...+++++||++|.|+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence            23568999999999999988888777776665543 4689999999999743          234799999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +++++.+.+
T Consensus       196 l~~~L~~~~  204 (204)
T cd01878         196 LLEAIEELL  204 (204)
T ss_pred             HHHHHHhhC
Confidence            999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=8.8e-24  Score=142.44  Aligned_cols=116  Identities=33%  Similarity=0.459  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+|+|++|||||||+++|.+..+.....+.++.+................+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999888762111122222244444556666666799999999999888888889999999999


Q ss_pred             EeCCChhhHHHH---HHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         90 FSLDNAASFHVL---SQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        90 ~d~~~~~s~~~~---~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ||++++++++.+   ..|+..+.....++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999887   456666666557799999999987

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00099 rab6; Provisional

Probab=99.92  E-value=2.1e-23  Score=149.80  Aligned_cols=125  Identities=31%  Similarity=0.503  Sum_probs=109.2

Q ss_pred             CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q psy17231         32 TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY  111 (189)
Q Consensus        32 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  111 (189)
                      .|...+  .+|+|.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||++++++|+.+..|+..+...
T Consensus         4 ~F~~~~--~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          4 TFDNNY--QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CcCCCC--CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            444443  788988998888888888999999999999999999999999999999999999999999999999998776


Q ss_pred             C-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        112 A-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       112 ~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      . +..|+++|+||+|+...               ...|+++||++|.|++++|+++++.+.+.
T Consensus        82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4 57899999999997431               23689999999999999999999988653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=3.5e-23  Score=144.95  Aligned_cols=142  Identities=26%  Similarity=0.394  Sum_probs=116.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|+|||||++++....+...+  .++.+.+.....+..++..+.+.+||+||+.++...+......++.++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   78 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEY--KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL   78 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcC--CCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence            479999999999999999999988865444  456666666666677776688999999999999888888999999999


Q ss_pred             EEEeCCCh-hhHHHHH-HHHHHHHHhCC-CCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231         88 LVFSLDNA-ASFHVLS-QHLLEIVTYAE-NAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        88 ~v~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      .++|+... .++.... .|...+..... +.|+++++||+|+...              ..+++++||++|.|++++|++
T Consensus        79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        79 RVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            99999877 6666654 67766666554 7999999999886541              237899999999999999988


Q ss_pred             H
Q psy17231        151 I  151 (189)
Q Consensus       151 i  151 (189)
                      +
T Consensus       159 l  159 (161)
T TIGR00231       159 V  159 (161)
T ss_pred             h
Confidence            6

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=1.8e-23  Score=149.17  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHH---hcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSY---YKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~   82 (189)
                      +|+++|.+|||||||+++|.+........+..|.  +.....+...+ ...+.+|||||+.+    ...+...+   +..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~--~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCcccc--CCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            5899999999999999999876542221112221  22222233333 24789999999742    22233333   346


Q ss_pred             CcEEEEEEeCCCh-hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231         83 AEAAILVFSLDNA-ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        83 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~  143 (189)
                      +|++++|+|++++ ++++.+..|++.+....   .++|+++|+||+|+...               ..+++++||+++.|
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            9999999999999 79999999998887764   36999999999885321               24789999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQ  154 (189)
Q Consensus       144 i~~~~~~i~~~  154 (189)
                      ++++|+++.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0075|consensus

Probab=99.91  E-value=2.8e-24  Score=144.35  Aligned_cols=143  Identities=18%  Similarity=0.322  Sum_probs=123.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      .++.+.++|..++|||||.|....+.+....  .||.|++....    ....+.+.+||.||+..|..+|..+++.++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~ai   92 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAI   92 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence            4678999999999999999999988886655  77887776443    33357889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVEE  146 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~~  146 (189)
                      ++|+|+++++.++..+..++.+....  .++|++|+|||.|+++...                  .+|-+|+++..|++.
T Consensus        93 vY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   93 VYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            99999999999988888888888776  7899999999988776543                  678899999999999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +.+|++++-
T Consensus       173 ~~~Wli~hs  181 (186)
T KOG0075|consen  173 TLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHh
Confidence            999998753

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=4.4e-23  Score=146.07  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +.|+++|++|||||||+++|.+..   +.....+..|+  +.......+.+ ...+.+|||||++++.......+..+|+
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~   77 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITI--DLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL   77 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceE--EeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence            468999999999999999998532   32222223333  33333344432 3578999999999887666677889999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEEeeccCCC
Q psy17231         86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYKTSCKTGE  142 (189)
Q Consensus        86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~  142 (189)
                      +++|+|+++   +++++.+.    .+... ...|+++|+||+|+...                    ..+++++||++|.
T Consensus        78 ii~V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          78 VLLVVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEEEEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            999999987   44443332    12222 23599999999886321                    2479999999999


Q ss_pred             CHHHHHHHHHH
Q psy17231        143 GVEEMFADIGR  153 (189)
Q Consensus       143 ~i~~~~~~i~~  153 (189)
                      |++++++.+.+
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=1.1e-22  Score=160.24  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=107.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc---------cccchHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER---------VASITSS   78 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   78 (189)
                      .++|+++|.+|+|||||+|+|.+..+.....+.+|.  +.....+.+.+ ...+.+|||+|..+         |... ..
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            489999999999999999999987755444445554  44455555533 24789999999732         1111 12


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------CCceEEeeccCCCCHHHHH
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      .+..+|++++|+|++++.+++.+..|...+.... .++|+++|+||+|+...         ..+++++||++|.|+++++
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~  344 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLL  344 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHH
Confidence            4778999999999999988877776665555543 47999999999997431         1258999999999999999


Q ss_pred             HHHHHH
Q psy17231        149 ADIGRQ  154 (189)
Q Consensus       149 ~~i~~~  154 (189)
                      +++.+.
T Consensus       345 ~~I~~~  350 (351)
T TIGR03156       345 EAIAER  350 (351)
T ss_pred             HHHHhh
Confidence            998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0096|consensus

Probab=99.90  E-value=3.8e-23  Score=144.53  Aligned_cols=151  Identities=25%  Similarity=0.433  Sum_probs=134.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..++++++|+.|.||||+.++...++|...+  .+|+|..........+...+++..|||.|++.+..+...++-...++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y--~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA   86 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY--PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA   86 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecc--cCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence            4799999999999999999999999997666  88899888887766655579999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                      +++||++.+-++.++..|.+++.+...++|++++|||.|...-             ...|++.||+++.|.+..|-|+.+
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar  166 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR  166 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhh
Confidence            9999999999999999999999999889999999999774322             128899999999999999999999


Q ss_pred             HHHHhh
Q psy17231        154 QLILSN  159 (189)
Q Consensus       154 ~i~~~~  159 (189)
                      ++....
T Consensus       167 Kl~G~p  172 (216)
T KOG0096|consen  167 KLTGDP  172 (216)
T ss_pred             hhcCCC
Confidence            887653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2e-22  Score=157.52  Aligned_cols=146  Identities=18%  Similarity=0.130  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cch---HHHhc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SIT---SSYYK   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~   81 (189)
                      ..|.|+|.||||||||++++...+......+..|.  ......+.+.+ ...+.+||+||..+-.    .+.   ...++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~--~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie  235 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--HPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIE  235 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCcee--CceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence            46889999999999999999976644333223343  33334444422 2468999999975321    222   33456


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~  143 (189)
                      .++++++|+|+++.++++.+..|...+..+.   .++|+++|+||+|+...               ..+++++||+++.|
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            7899999999998888999999999887764   37999999999996321               13789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLIL  157 (189)
Q Consensus       144 i~~~~~~i~~~i~~  157 (189)
                      ++++++++.+.+.+
T Consensus       316 I~eL~~~L~~~l~~  329 (335)
T PRK12299        316 LDELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999888754

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.90  E-value=3.4e-22  Score=142.16  Aligned_cols=139  Identities=19%  Similarity=0.195  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      .|+++|++|+|||||+++|....+.....+..|.  +......... .....+.+|||||+..+...+...+..+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQ--HIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEE--eeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence            5899999999999999999988876543222232  2222223332 124678999999998888888888899999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------CCceEEeeccCCCC
Q psy17231         89 VFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        89 v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------~~~~~~~Sa~~~~~  143 (189)
                      |+|+++.   +++..+    ..+..  .++|+++|+||+|+...                      ..+++++||++|.|
T Consensus        80 v~d~~~~~~~~~~~~~----~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (168)
T cd01887          80 VVAADDGVMPQTIEAI----KLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG  153 (168)
T ss_pred             EEECCCCccHHHHHHH----HHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence            9999874   333322    22222  37999999999885411                      13789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLI  156 (189)
Q Consensus       144 i~~~~~~i~~~i~  156 (189)
                      ++++++++.+...
T Consensus       154 i~~l~~~l~~~~~  166 (168)
T cd01887         154 IDDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.89  E-value=6.9e-23  Score=142.18  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-----ccccchHHHhcCCc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-----RVASITSSYYKFAE   84 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~   84 (189)
                      ||+++|++|||||||+++|.+..+.  +  .+|.+.+       +.     -.+||+||+.     .+..+.. .++.+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~--~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--Y--KKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--c--ccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCC
Confidence            8999999999999999999877642  1  3333222       11     1689999973     2333323 478999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++++|||++++.++.. ..|...    . ..|+++|+||+|+.+.               ..+++++||++|.|++++|+
T Consensus        65 ~vilv~d~~~~~s~~~-~~~~~~----~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        65 VIALVQSATDPESRFP-PGFASI----F-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEEEecCCCCCcCCC-hhHHHh----c-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            9999999999988754 334332    1 3599999999987421               12689999999999999999


Q ss_pred             HHH
Q psy17231        150 DIG  152 (189)
Q Consensus       150 ~i~  152 (189)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=1.4e-21  Score=137.17  Aligned_cols=139  Identities=22%  Similarity=0.210  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSSYY   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   80 (189)
                      ++|+++|++|+|||||++++.+........ .++...+.....+...  ...+.+|||||..++...        ....+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            589999999999999999999776432221 2222223333334443  357899999998665432        23466


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      ..+|++++|+|++++.+......+..     ..+.|+++|+||.|+...        ..+++++||+++.|++++++++.
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  153 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALL  153 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHH
Confidence            78999999999998877766554433     347999999999997532        23799999999999999999987


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      +.+
T Consensus       154 ~~~  156 (157)
T cd04164         154 ELA  156 (157)
T ss_pred             Hhh
Confidence            653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.88  E-value=5e-22  Score=145.00  Aligned_cols=136  Identities=14%  Similarity=0.156  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCCCCCCC----------CcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY--DTFISSSS----------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT   76 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~--~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   76 (189)
                      -+|+++|.+|+|||||+++|..  +.+.....          ...+.+.++......+......+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999987  44433221          11223444444444444456789999999999999999


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------cCCce
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-----------------------LISST  133 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-----------------------~~~~~  133 (189)
                      ..+++.+|++++|+|+++.. +.....++..+..  .++|+++|+||+|+..                       ...++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV  159 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence            99999999999999998742 2333344444433  3799999999988631                       12378


Q ss_pred             EEeeccCCCCHHHH
Q psy17231        134 YKTSCKTGEGVEEM  147 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~  147 (189)
                      +++||++|.|+.++
T Consensus       160 v~~Sa~~g~~~~~~  173 (194)
T cd01891         160 LYASAKNGWASLNL  173 (194)
T ss_pred             EEeehhcccccccc
Confidence            99999999888654

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.88  E-value=2.4e-21  Score=134.29  Aligned_cols=137  Identities=36%  Similarity=0.598  Sum_probs=108.9

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231         13 LCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS   91 (189)
Q Consensus        13 i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   91 (189)
                      ++|++|+|||||++++..... ....  .++. .+..............+.+||+||+..+...+...+..++++++|+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~--~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   77 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEY--ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD   77 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCccc--ccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence            589999999999999998776 2222  3333 45555566665667889999999998888877889999999999999


Q ss_pred             CCChhhHHHHHHHHHH--HHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         92 LDNAASFHVLSQHLLE--IVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        92 ~~~~~s~~~~~~~~~~--~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      ++++.++.....|...  ......+.|+++++||+|....                ..+++++|++++.|++++++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9999999888877322  2223378999999999886432                23789999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0071|consensus

Probab=99.88  E-value=8e-22  Score=131.59  Aligned_cols=143  Identities=17%  Similarity=0.383  Sum_probs=121.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|..++||||++.+|.-+...   ...||+|++....++.    .++|++||.+|+...+..|..++.+..+
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~---~~ipTvGFnvetVtyk----N~kfNvwdvGGqd~iRplWrhYy~gtqg   87 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYK----NVKFNVWDVGGQDKIRPLWRHYYTGTQG   87 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc---ccccccceeEEEEEee----eeEEeeeeccCchhhhHHHHhhccCCce
Confidence            35789999999999999999999866532   2377888777665543    4789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~  145 (189)
                      +|||.|.++++..++.+..+.++....  .+.|++|.+||+|++....                  -+..+||.+|.++.
T Consensus        88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999999999999999988888877664  7899999999999876532                  34668999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        146 EMFADIGRQL  155 (189)
Q Consensus       146 ~~~~~i~~~i  155 (189)
                      |-|.|+++.+
T Consensus       168 eglswlsnn~  177 (180)
T KOG0071|consen  168 EGLSWLSNNL  177 (180)
T ss_pred             HHHHHHHhhc
Confidence            9999998754

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.88  E-value=2.8e-21  Score=136.09  Aligned_cols=134  Identities=16%  Similarity=0.205  Sum_probs=98.4

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHHhc--CCc
Q psy17231         13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSYYK--FAE   84 (189)
Q Consensus        13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~   84 (189)
                      ++|.+|+|||||++++.+..+....  .++...+.....+.+++  ..+.+|||||+.++..      +...++.  .++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d   76 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD   76 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence            5899999999999999887644333  23333344445555554  4789999999877654      2455554  899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++++|+|+++++...   .|...+...  ++|+++|+||+|+...              ..+++++||++|.|+++++++
T Consensus        77 ~vi~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          77 LIVNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999998865432   344444443  7999999999886432              237999999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=3.4e-21  Score=155.00  Aligned_cols=147  Identities=20%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--ccchH------HHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--ASITS------SYY   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~   80 (189)
                      .+|+++|.+|+|||||+|+|.+..+.....+..|.  +.....+.+.+. ..+.+|||+|..+.  ...+.      ..+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl--d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL--DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc--CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            58999999999999999999987654434334443  444444444432 25789999998432  12222      235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------CCc-eEEeeccCCCCHHHHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------ISS-TYKTSCKTGEGVEEMF  148 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------~~~-~~~~Sa~~~~~i~~~~  148 (189)
                      ..+|++++|+|++++.+++.+..|...+.... .++|+++|+||+|+...          ..+ ++.+||++|.|+++++
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~  354 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF  354 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence            78999999999999988877755544444332 47999999999997531          112 4889999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++.+.+...
T Consensus       355 e~I~~~l~~~  364 (426)
T PRK11058        355 QALTERLSGE  364 (426)
T ss_pred             HHHHHHhhhc
Confidence            9999988543

>PRK04213 GTP-binding protein; Provisional

Probab=99.88  E-value=4e-22  Score=146.18  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=93.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc-----------ccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-----------ERVAS   74 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~~   74 (189)
                      .+.++|+++|++|||||||+++|.+..+....  .++.  ++....+...    .+.+|||||.           +.+..
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            35689999999999999999999987764333  2332  3333333332    5799999993           44444


Q ss_pred             chHHHhc----CCcEEEEEEeCCChhhH-H--------HH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231         75 ITSSYYK----FAEAAILVFSLDNAASF-H--------VL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------  129 (189)
Q Consensus        75 ~~~~~~~----~~~~~i~v~d~~~~~s~-~--------~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------  129 (189)
                      .+..++.    .++++++|+|.++...+ +        .. ...+..+..  .++|+++|+||+|+.+.           
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  156 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAER  156 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHH
Confidence            4444443    34677778877543211 0        00 111222222  37999999999997321           


Q ss_pred             -C---------CceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        130 -I---------SSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       130 -~---------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                       .         .+++++||++| |++++++++.+.+....
T Consensus       157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence             1         14799999999 99999999998875433

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.1e-21  Score=160.56  Aligned_cols=144  Identities=19%  Similarity=0.172  Sum_probs=102.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   79 (189)
                      ..+|+|+|.+|||||||+|+|.+....... ..+++..+.......+.+  ..+.+|||||++.        +......+
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            468999999999999999999987642221 133333344444445554  3678999999763        22234557


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++.+|++++|+|+++..++.. ..+...+..  .++|+++|+||+|+...           ....+++||++|.|++++|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLL  191 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHH
Confidence            889999999999998755432 233333333  37999999999997431           1145799999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++++.+.+
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999988754

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=1.8e-21  Score=148.89  Aligned_cols=141  Identities=18%  Similarity=0.112  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHHHhc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSSYYK   81 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   81 (189)
                      +|+++|.+|||||||+|+|.+..+........|+. +.........+  .++.+|||||..+...        .....+.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999887643333233332 22222222222  4689999999754321        1234567


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~  146 (189)
                      .+|++++|+|+++..+.+  ..++..+...  +.|+++|+||+|+...               ..+++++||++|.|+++
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            899999999999876654  3344444333  7999999999986421               12689999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        147 MFADIGRQLIL  157 (189)
Q Consensus       147 ~~~~i~~~i~~  157 (189)
                      +++++.+.+..
T Consensus       155 L~~~l~~~l~~  165 (270)
T TIGR00436       155 LAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHhCCC
Confidence            99999887643

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.87  E-value=4.3e-21  Score=149.93  Aligned_cols=144  Identities=17%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cchHH---Hhc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SITSS---YYK   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~---~~~   81 (189)
                      ..|+++|.+|||||||++++..........+..|.  ......+.+.+ ...+.+||+||..+..    .+...   .+.
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~--~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--CCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            47899999999999999999977643332223332  33333444443 3578999999975322    23333   345


Q ss_pred             CCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------CCceEEeeccCC
Q psy17231         82 FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTG  141 (189)
Q Consensus        82 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~  141 (189)
                      .++++++|+|+++.   +.++.+..|..++..+.   .++|+++|+||+|+...              ..+++++||+++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            79999999999986   67788888887776653   47999999999996321              236899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQL  155 (189)
Q Consensus       142 ~~i~~~~~~i~~~i  155 (189)
                      .|++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999988754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=2.7e-21  Score=157.05  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=106.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TS   77 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   77 (189)
                      ..++|+++|.+|+|||||+|+|.+.... ....+..|  .+.....+.+++  ..+.+|||||..++...        ..
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT--~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~  289 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT--RDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR  289 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc--cccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            4589999999999999999999987642 22222222  344455555555  46799999998765432        22


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------CCceEEeeccCCCCHHHHHHH
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ..+..+|++++|+|++++.+++....|..     ..+.|+++|+||+|+...       ..+++++||++|.|+++++++
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~  364 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREA  364 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHH
Confidence            35788999999999999887776554443     347999999999998542       236899999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +.+.+..
T Consensus       365 L~~~l~~  371 (449)
T PRK05291        365 IKELAFG  371 (449)
T ss_pred             HHHHHhh
Confidence            9888753

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.87  E-value=7.7e-21  Score=153.73  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS   78 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   78 (189)
                      +.++|+++|++|||||||+|+|.+........ .++...+.....+.+++  ..+.+|||||+.++...        ...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            46899999999999999999999865422222 22333455556666665  45799999998665432        235


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------CCceEEeeccCCCCHHHHHH
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++.+|++++|+|++++.+++..  |+..+..  .++|+++|+||+|+...         ..+++++||++ .||+++|+
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~  353 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVD  353 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHH
Confidence            67899999999999998877665  7666543  37899999999997432         12578999998 69999999


Q ss_pred             HHHHHHHHh
Q psy17231        150 DIGRQLILS  158 (189)
Q Consensus       150 ~i~~~i~~~  158 (189)
                      .+.+.+.+.
T Consensus       354 ~L~~~i~~~  362 (442)
T TIGR00450       354 LLTQKINAF  362 (442)
T ss_pred             HHHHHHHHH
Confidence            998888654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=6.5e-21  Score=156.05  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   76 (189)
                      ..++|+++|.+|||||||+++|.+........ .++...+.....+..++.  .+.+|||||..+          +..+.
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~-~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD-VAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            46899999999999999999999876532222 233334555556666664  468999999632          22221


Q ss_pred             -HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231         77 -SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS  137 (189)
Q Consensus        77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S  137 (189)
                       ...++.+|++++|+|+++..++..+. ++..+..  .++|+|+|+||+|+...                  ..+++++|
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence             23568999999999999988777664 4444444  37999999999997320                  24789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        138 CKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |++|.|++++|+.+.+.+.+...
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999887765443

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=4.1e-21  Score=150.95  Aligned_cols=145  Identities=19%  Similarity=0.208  Sum_probs=100.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchH-------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITS-------   77 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------   77 (189)
                      .+..+|+++|.+|||||||+|+|.+..+........|. .+.....+..++  .++.+|||||..+ +..+..       
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT-r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT-RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc-cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            34569999999999999999999988764322212221 233344455554  4689999999853 222221       


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCC
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGE  142 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~  142 (189)
                      ..+.++|++++|+|.++  ++.... .|+..+...  +.|.++|+||+|+...              ...++++||++|.
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~  202 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGK  202 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence            23678999999999665  344453 344444443  5677899999996321              1368999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQLIL  157 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~  157 (189)
                      |++++|+++.+.+..
T Consensus       203 gv~eL~~~L~~~l~~  217 (339)
T PRK15494        203 NIDGLLEYITSKAKI  217 (339)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999887654

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=3.8e-21  Score=140.12  Aligned_cols=146  Identities=19%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC-------CCCCCCCCcccceeeeeEEEEE----------ECCeEEEEEEEeCCCccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD-------TFISSSSRKSTLGLDNFNKEYK----------VDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~-------~~~~~~~~~~t~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~   71 (189)
                      ++|+++|++|+|||||+++|...       .......+..|.+.......+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            48999999999999999999862       1111111223333333222222          112356889999999876


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-----------------------  128 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-----------------------  128 (189)
                      +..........+|++++|+|+++.........+.  +... .+.|+++|+||+|+..                       
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5443334456789999999998754333322222  1122 2689999999988531                       


Q ss_pred             -cCCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        129 -LISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                       ...+++++||++|.|++++++++..++.-
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             12368999999999999999999888753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.86  E-value=4.7e-21  Score=134.64  Aligned_cols=137  Identities=18%  Similarity=0.144  Sum_probs=93.9

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHHHhcCC
Q psy17231         12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSSYYKFA   83 (189)
Q Consensus        12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~   83 (189)
                      +++|.+|+|||||+++|.+..........+ ...+.........+  ..+.+|||||..++..        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            479999999999999999765321111122 12233333333333  5789999999887543        334567889


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------C-CceEEeeccCCCCHHHHHHHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------I-SSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~-~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |++++|+|..+..+.... .....+...  +.|+++|+||+|+.+.          . .+++++|+++|.|+++++++++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL  154 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence            999999999875443322 122222332  6999999999886531          1 2789999999999999999998


Q ss_pred             HH
Q psy17231        153 RQ  154 (189)
Q Consensus       153 ~~  154 (189)
                      +.
T Consensus       155 ~~  156 (157)
T cd01894         155 EL  156 (157)
T ss_pred             hh
Confidence            65

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.86  E-value=4.5e-21  Score=137.30  Aligned_cols=139  Identities=19%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccch---HHHhcCCcE
Q psy17231         13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASIT---SSYYKFAEA   85 (189)
Q Consensus        13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~   85 (189)
                      ++|++|||||||+++|.+........+..|.  ......+.+.+ ...+.+||+||..+    ...+.   ...++.+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTL--EPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceee--cCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            5899999999999999987652222222222  22223333431 35689999999743    22222   345678999


Q ss_pred             EEEEEeCCCh------hhHHHHHHHHHHHHHhC--------CCCcEEEEeecccccc---------------cCCceEEe
Q psy17231         86 AILVFSLDNA------ASFHVLSQHLLEIVTYA--------ENAKIFLCGNNEQCHN---------------LISSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~d~~~---------------~~~~~~~~  136 (189)
                      +++|+|+++.      .++++...|...+....        .+.|+++|+||+|+..               ....++++
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence            9999999988      57888877777776543        3799999999988632               12378999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q psy17231        137 SCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~  154 (189)
                      ||+++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.86  E-value=1.1e-20  Score=136.67  Aligned_cols=141  Identities=22%  Similarity=0.217  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc--------------ccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRK--------------STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI   75 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   75 (189)
                      +|+++|.+|+|||||++++.+..........              ...........+...  ...+.+||+||..++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999887665432111              111112222222332  467899999999888888


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------------------
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------  128 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------  128 (189)
                      +...++.+|++++|+|+++..... ...++..+..  .+.|+++|+||+|+..                           
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            888899999999999998765432 2334444333  3799999999988642                           


Q ss_pred             ----cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        129 ----LISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       129 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                          ...+++++||++|.|++++++++.+.+
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                134789999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.86  E-value=1.5e-20  Score=131.10  Aligned_cols=134  Identities=22%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH--h
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY--Y   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~--~   80 (189)
                      ++|+++|.||||||||+|+|.+........+..|.  +.....+...+  ..+.++|+||......      +...+  .
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv--~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTV--EKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSS--EEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCe--eeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence            58999999999999999999998866555444443  55566666666  5789999999654432      22223  3


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCCHHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i~~  146 (189)
                      ...|+++.|.|+++.+.-   .....++.+.  ++|+++|.||+|...              ...+++.+||+++.|+++
T Consensus        77 ~~~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   77 EKPDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             TSSSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             cCCCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            688999999999885432   2344455555  799999999977432              234999999999999999


Q ss_pred             HHHHH
Q psy17231        147 MFADI  151 (189)
Q Consensus       147 ~~~~i  151 (189)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG1673|consensus

Probab=99.86  E-value=2.7e-21  Score=131.26  Aligned_cols=151  Identities=20%  Similarity=0.310  Sum_probs=132.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||.++|++.+|||||+-++.++.+...+  ..+.|+++..+++...+..+.+.+||..|++++....+....++-+++
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~--~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEY--TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHH--HHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            689999999999999999999999886554  788899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--------------------ccCCceEEeeccCCCCHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--------------------NLISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--------------------~~~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++||++.++++..+..|+++.+......-=|+||+|.|..                    -+..+.|.||+..+.|+..+
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            9999999999999999999999887333335789995532                    12338899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy17231        148 FADIGRQLILSNR  160 (189)
Q Consensus       148 ~~~i~~~i~~~~~  160 (189)
                      |+-+..++.+-.-
T Consensus       178 FK~vlAklFnL~~  190 (205)
T KOG1673|consen  178 FKIVLAKLFNLPW  190 (205)
T ss_pred             HHHHHHHHhCCce
Confidence            9999888876543

>KOG0076|consensus

Probab=99.86  E-value=9.8e-22  Score=135.67  Aligned_cols=149  Identities=23%  Similarity=0.331  Sum_probs=121.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC---CC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FI--SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      +..+.++|+|+.++|||||+.++....   +.  ......+|.|.+.....+.    ..++.+||..|++..+++|..+|
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHH
Confidence            456899999999999999999985322   11  1123356666665554443    35789999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------CCceEEeecc
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------ISSTYKTSCK  139 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~  139 (189)
                      ..+|++++++|++|++.|+........+....  .+.|+++.+||+|+.+.                   -.++..+||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            99999999999999999999987777776665  79999999999775433                   1378899999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q psy17231        140 TGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~~~  158 (189)
                      +|+||++..+|+.+.+.+.
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999998766

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.86  E-value=6.3e-21  Score=159.15  Aligned_cols=147  Identities=20%  Similarity=0.186  Sum_probs=109.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCC----CCcccceeeeeEEEE--EE---CCeEEEEEEEeCCCccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT-------FISSS----SRKSTLGLDNFNKEY--KV---DDRSIQMQLWDTGGMER   71 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~-------~~~~~----~~~~t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~   71 (189)
                      .-+++++|+.++|||||+++|....       +....    +.+.+.|.++.....  .+   ++..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3489999999999999999998642       11111    001222444444322  22   45568999999999999


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEE
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYK  135 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~  135 (189)
                      |...+...++.+|++++|+|+++..+.+....|.....   .++|+++|+||+|+....                .++++
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~  159 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL  159 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence            99888999999999999999998766666665554332   368999999999974220                14799


Q ss_pred             eeccCCCCHHHHHHHHHHHHHH
Q psy17231        136 TSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      +||++|.|++++|+++.+.+..
T Consensus       160 vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       160 ASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             eeccCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999887643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=2.4e-20  Score=132.83  Aligned_cols=142  Identities=22%  Similarity=0.244  Sum_probs=97.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------c
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----------I   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~   75 (189)
                      ++++|+++|.+|+|||||++++.+...........+ ........+..++  ..+.+||+||..+...           .
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~   77 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGT-TRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLR   77 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCC-ccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHH
Confidence            367999999999999999999987664322221111 1122223344444  3578999999754311           0


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK  135 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~  135 (189)
                      ....+..+|++++|+|++++.+.... .++..+..  .+.|+++++||+|+...                    ..++++
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            12346789999999999988765443 23333333  36999999999886422                    147999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q psy17231        136 TSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~  154 (189)
                      +||+++.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=1.8e-20  Score=158.18  Aligned_cols=144  Identities=18%  Similarity=0.254  Sum_probs=107.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+..+|+++|..++|||||+++|....+........|.....+...+...+....+.+|||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            45679999999999999999999877665433222332222233333333445789999999999999999999999999


Q ss_pred             EEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231         86 AILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG  141 (189)
Q Consensus        86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~  141 (189)
                      +++|+|+++.   ++++.+.    .+..  .++|+|+++||+|+...                     ..+++++||++|
T Consensus       322 aILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            9999999873   4444332    2222  37999999999987431                     136899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQL  155 (189)
Q Consensus       142 ~~i~~~~~~i~~~i  155 (189)
                      .|++++++++....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999987753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.85  E-value=4.2e-20  Score=153.64  Aligned_cols=139  Identities=19%  Similarity=0.185  Sum_probs=103.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .++.+|+++|++++|||||+++|....+.....+..|  .+.....+.+.+. ..+.+|||||++.|..++...+..+|+
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT--~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT--QHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee--ecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence            4568999999999999999999998777554322222  2333333444332 278999999999999988888999999


Q ss_pred             EEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231         86 AILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG  141 (189)
Q Consensus        86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~  141 (189)
                      +++|+|+++.   ++.+.+    .....  .++|+++++||+|+.+.                     ..+++++||++|
T Consensus       162 aILVVda~dgv~~qT~e~i----~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIEAI----SHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            9999999863   343322    22222  37999999999997431                     025899999999


Q ss_pred             CCHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGR  153 (189)
Q Consensus       142 ~~i~~~~~~i~~  153 (189)
                      .|++++++++..
T Consensus       236 eGI~eLl~~I~~  247 (587)
T TIGR00487       236 DGIDELLDMILL  247 (587)
T ss_pred             CChHHHHHhhhh
Confidence            999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=7.8e-20  Score=134.27  Aligned_cols=139  Identities=15%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC-cEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA-EAAIL   88 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~   88 (189)
                      +|+++|++|||||||+++|....+..+.  . ++..+.........+....+.+||+||+.++...+..+++.+ +++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--T-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc--C-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence            6899999999999999999988765443  2 222222222222123356789999999999988888888898 99999


Q ss_pred             EEeCCCh-hhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231         89 VFSLDNA-ASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus        89 v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |+|+++. +++.....|+..+....    .++|+++++||+|+..         +..-.-+.+.++.-+..+...+.
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~---------a~~~~~i~~~le~ei~~~~~~r~  146 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT---------AKPAKKIKEQLEKELNTLRESRS  146 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc---------cCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999987 77888877776654432    5899999999999865         33333455555554555554443

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.85  E-value=1.6e-20  Score=132.74  Aligned_cols=129  Identities=15%  Similarity=0.188  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch----HHHhcCCcE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT----SSYYKFAEA   85 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~   85 (189)
                      +|+++|.+|+|||||+|++.+....  .  ..+.       ...+...    .+||+||.......+    ...++.+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~   67 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--A--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDM   67 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--C--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence            7999999999999999998754311  1  1121       1122221    379999974222211    223679999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +++|+|+++.+++  +..|+..+   ..++|+++++||.|+...              ..+++++||++|.|++++|+++
T Consensus        68 il~v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l  142 (158)
T PRK15467         68 LIYVHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL  142 (158)
T ss_pred             EEEEEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence            9999999988765  33454443   236899999999886421              1389999999999999999999


Q ss_pred             HHHHHHh
Q psy17231        152 GRQLILS  158 (189)
Q Consensus       152 ~~~i~~~  158 (189)
                      .+.+.+.
T Consensus       143 ~~~~~~~  149 (158)
T PRK15467        143 ASLTKQE  149 (158)
T ss_pred             HHhchhh
Confidence            8877544

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=6.4e-20  Score=146.99  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccchHH---HhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----ASITSS---YYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~   82 (189)
                      .|.++|.||||||||++++.+.+......+..|.  ......+.+.+ ...+.+||+||..+.    ..+...   .+..
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl--~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTL--VPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCccee--ceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            7899999999999999999987643333223333  22222333331 246899999997532    122233   3556


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-----------CCceEEeeccCCCCHH
Q psy17231         83 AEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~  145 (189)
                      ++++++|+|+++.   +.++....|...+..+.   .++|++||+||+|+...           ..+++++||+++.|++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~  316 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLD  316 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHH
Confidence            8999999999864   66777777777777654   47999999999996321           1368999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy17231        146 EMFADIGRQLILSN  159 (189)
Q Consensus       146 ~~~~~i~~~i~~~~  159 (189)
                      ++++++.+.+.+..
T Consensus       317 eL~~~L~~~l~~~~  330 (424)
T PRK12297        317 ELLYAVAELLEETP  330 (424)
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999998876654

>KOG3883|consensus

Probab=99.85  E-value=1.2e-19  Score=122.88  Aligned_cols=160  Identities=21%  Similarity=0.348  Sum_probs=125.5

Q ss_pred             CCCCCC-CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCcccc-ccchH
Q psy17231          1 MASIKV-PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERV-ASITS   77 (189)
Q Consensus         1 m~~~~~-~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~   77 (189)
                      |-+.+| +-.|++++|..++|||++++++..+......+..+|+. +.+...+.. ++-.-.+.++||.|...+ ..+-.
T Consensus         1 ~~~~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLpr   79 (198)
T KOG3883|consen    1 MLNAKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPR   79 (198)
T ss_pred             CcchhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhH
Confidence            344454 45899999999999999999999888887887788875 555554443 344557899999998877 45667


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT  140 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~  140 (189)
                      .++.-+|++++||+..|++||+.+.-.-..+....  ..+|++|++||+|..+-               ....+++++.+
T Consensus        80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d  159 (198)
T KOG3883|consen   80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD  159 (198)
T ss_pred             hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence            78889999999999999999988854444444433  57999999999887432               12779999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      ...+-|.|-++...+-..+.+
T Consensus       160 R~sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  160 RPSLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             chhhhhHHHHHHHhccCCccc
Confidence            999999999999888766543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=8.3e-20  Score=148.26  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch---------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT---------   76 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------   76 (189)
                      ...++++++|.+|+|||||+++|.+...........| ..+.....+..++.  .+.+|||||..++....         
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt-t~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~  246 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT-TRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL  246 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc-eECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence            3458999999999999999999997654322221222 22333444445443  68999999976544321         


Q ss_pred             --HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc-cc------------------CCceEE
Q psy17231         77 --SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-NL------------------ISSTYK  135 (189)
Q Consensus        77 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-~~------------------~~~~~~  135 (189)
                        ...++.+|++++|+|+++..+..... ++..+...  ++|+++|+||+|+. ..                  ..++++
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence              24678899999999999876655543 33333333  79999999999974 10                  138899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      +||++|.|++++|+++.+.+...
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998876644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.84  E-value=1.2e-19  Score=128.25  Aligned_cols=142  Identities=18%  Similarity=0.180  Sum_probs=96.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSS   78 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~   78 (189)
                      ...+|+++|++|+|||||++++.+...........+.. ......  .......+.+||+||......        ....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   78 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS   78 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence            46789999999999999999998776533222122211 111111  222246789999999764332        2344


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCC
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGE  142 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~  142 (189)
                      .+..+|++++|+|++++.+ .....+...+...  +.|+++|+||+|+...                ..+++++|++++.
T Consensus        79 ~~~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  155 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE  155 (168)
T ss_pred             HHHhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence            5788999999999998721 1122333333333  6999999999887521                2488999999999


Q ss_pred             CHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQ  154 (189)
Q Consensus       143 ~i~~~~~~i~~~  154 (189)
                      +++++++++.+.
T Consensus       156 ~~~~l~~~l~~~  167 (168)
T cd04163         156 NVDELLEEIVKY  167 (168)
T ss_pred             ChHHHHHHHHhh
Confidence            999999998654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.2e-19  Score=147.46  Aligned_cols=138  Identities=20%  Similarity=0.251  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSYY   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   80 (189)
                      .+|+++|.+|||||||+|+|.+........ .+....+.......+++  ..+.+|||||+..        +.......+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            589999999999999999999776422211 22222344444555555  6789999999876        222234567


Q ss_pred             cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHH
Q psy17231         81 KFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ..+|++++|+|+++..+.  ..+..|+..   .  ++|+++|+||+|....           ...++++||++|.|++++
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l  153 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDL  153 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHH
Confidence            899999999999875332  233444432   2  7999999999996431           125899999999999999


Q ss_pred             HHHHHHH
Q psy17231        148 FADIGRQ  154 (189)
Q Consensus       148 ~~~i~~~  154 (189)
                      ++++...
T Consensus       154 ~~~I~~~  160 (435)
T PRK00093        154 LDAILEE  160 (435)
T ss_pred             HHHHHhh
Confidence            9998873

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=1.9e-19  Score=153.25  Aligned_cols=140  Identities=17%  Similarity=0.196  Sum_probs=104.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+...|+++|..++|||||+++|....+.....  ..+..+.....+.+.+  ..+.||||||++.|..++...+..+|
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~--~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aD  362 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA--GGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTD  362 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccc--CceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCC
Confidence            3567899999999999999999998777654332  2221122223344443  57899999999999998888899999


Q ss_pred             EEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccC
Q psy17231         85 AAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKT  140 (189)
Q Consensus        85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~  140 (189)
                      ++++|+|+++   +++.+.+    ..+..  .++|+||++||+|+.+.                     ..+++++||++
T Consensus       363 iaILVVdAddGv~~qT~e~i----~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        363 IVVLVVAADDGVMPQTIEAI----NHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEEEEECCCCCCHhHHHHH----HHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            9999999987   3444332    22222  37999999999997431                     13689999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQ  154 (189)
Q Consensus       141 ~~~i~~~~~~i~~~  154 (189)
                      |.|++++|+++...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999998753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=1.8e-19  Score=146.24  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cc---hHHHhc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SI---TSSYYK   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~   81 (189)
                      ..|+|+|.||+|||||+|+|.+.+......+..|+  ......+...+  ..+.+||+||..+..    .+   ....+.
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl--~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTL--VPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccc--cceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            47899999999999999999977654333333443  33344444444  578999999964321    11   223456


Q ss_pred             CCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhC------------CCCcEEEEeeccccccc--------------CC
Q psy17231         82 FAEAAILVFSLDNA----ASFHVLSQHLLEIVTYA------------ENAKIFLCGNNEQCHNL--------------IS  131 (189)
Q Consensus        82 ~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~ivv~nK~d~~~~--------------~~  131 (189)
                      .++++++|+|+++.    +.++.+..|..++..+.            .++|+|||+||+|+...              ..
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~  315 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW  315 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence            79999999999753    34444444444443321            36999999999886421              23


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      +++++||+++.|++++++++.+.+...+
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            7899999999999999999998886654

>PRK00089 era GTPase Era; Reviewed

Probab=99.83  E-value=3.2e-19  Score=137.98  Aligned_cols=146  Identities=19%  Similarity=0.188  Sum_probs=99.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ch
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------IT   76 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~   76 (189)
                      +++.-.|+++|++|||||||+|+|.+.+.........|.. .........+  ..++.+|||||......        ..
T Consensus         2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~   78 (292)
T PRK00089          2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAA   78 (292)
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHH
Confidence            3455679999999999999999999877644333233321 1111222222  36889999999754322        22


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccC
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKT  140 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~  140 (189)
                      ...+..+|++++|+|+++..  .....++...... .+.|+++|+||.|+...                ..+++.+||++
T Consensus        79 ~~~~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~  155 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEKI--GPGDEFILEKLKK-VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK  155 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh-cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence            34567899999999998832  1222222222222 26899999999997511                24789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQLI  156 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~  156 (189)
                      +.|++++++++.+.+.
T Consensus       156 ~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        156 GDNVDELLDVIAKYLP  171 (292)
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999988764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.82  E-value=2.8e-19  Score=131.36  Aligned_cols=143  Identities=14%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCcccceeeeeEEEEE-----------------------EC--C----
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF---ISSSSRKSTLGLDNFNKEYK-----------------------VD--D----   56 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~---~~~~~~~~t~~~~~~~~~~~-----------------------~~--~----   56 (189)
                      ++|.++|+.|+|||||+..+.....   ..+.....++...+....+.                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999964411   11111111111110000000                       00  0    


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---  129 (189)
                      ....+.+||+||+++|.......+..+|++++|+|++++    ++++.+..    +... ...|+++|+||.|+...   
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~-~~~~iiivvNK~Dl~~~~~~  155 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM-GLKHIIIVQNKIDLVKEEQA  155 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc-CCCcEEEEEEchhccCHHHH
Confidence            125789999999998877777778889999999999873    33333322    2222 23589999999886421   


Q ss_pred             -----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 -----------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 -----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                       ..+++++||++|.|++++|+++.+.+.
T Consensus       156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence                             236899999999999999999987653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=5.8e-19  Score=140.67  Aligned_cols=146  Identities=18%  Similarity=0.117  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~   82 (189)
                      -|.|+|.||||||||+|+|.+.+......+..|.  ......+...+ ...+.++|+||..+-..       .....+..
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~--~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTL--VPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCcc--CcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            6889999999999999999977653333333333  33333444432 23589999999754221       12235778


Q ss_pred             CcEEEEEEeCC---ChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------C--CceEEeeccC
Q psy17231         83 AEAAILVFSLD---NAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------I--SSTYKTSCKT  140 (189)
Q Consensus        83 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~--~~~~~~Sa~~  140 (189)
                      ++++++|+|++   +.+.++.+..|+..+..+.   .++|+++|+||+|+...              .  .+++.+||++
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            99999999998   4566777788888777653   46999999999986321              1  2689999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy17231        141 GEGVEEMFADIGRQLILS  158 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~  158 (189)
                      +.|++++++++.+.+.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999999888654

>KOG0072|consensus

Probab=99.82  E-value=2.4e-20  Score=125.10  Aligned_cols=145  Identities=23%  Similarity=0.418  Sum_probs=117.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|..|+||||++.++.-++...   ..|+++++.....+  .  ..++++||..|+-.....|..++.+.++
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvt---tkPtigfnve~v~y--K--NLk~~vwdLggqtSirPyWRcYy~dt~a   88 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVT---TKPTIGFNVETVPY--K--NLKFQVWDLGGQTSIRPYWRCYYADTDA   88 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccc---cCCCCCcCcccccc--c--cccceeeEccCcccccHHHHHHhcccce
Confidence            367999999999999999999998776543   36777766655443  3  3688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +|+|+|.+|++........+..+....  ....++|++||+|....                  ...+|++||.+|+|++
T Consensus        89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            999999999987766655555555443  46788899999885433                  2378999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        146 EMFADIGRQLIL  157 (189)
Q Consensus       146 ~~~~~i~~~i~~  157 (189)
                      +.++|+++.+..
T Consensus       169 ~~~DWL~~~l~~  180 (182)
T KOG0072|consen  169 PAMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998864

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.82  E-value=5.5e-19  Score=128.87  Aligned_cols=140  Identities=16%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   76 (189)
                      ..++|+++|++|+|||||+++|.+..+....  .++.+.+.....+..   ...+.+|||||..          ++..+.
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLART--SKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccc--cCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            4589999999999999999999987643333  233332332222222   2578999999953          222233


Q ss_pred             HHHhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceE
Q psy17231         77 SSYYKFA---EAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTY  134 (189)
Q Consensus        77 ~~~~~~~---~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~  134 (189)
                      ..++..+   +++++|+|.+++.+...  +..|+   ..  .+.|+++++||.|+...                 ..+++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            3444433   67888888876543322  22222   22  37999999999885321                 24789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      ++||++|.|++++++.+.+.+.
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999877653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=2.4e-19  Score=149.82  Aligned_cols=148  Identities=21%  Similarity=0.194  Sum_probs=106.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC--CC---------CCCCCcccceeeeeEEE--EEE---CCeEEEEEEEeCCCccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT--FI---------SSSSRKSTLGLDNFNKE--YKV---DDRSIQMQLWDTGGMER   71 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~--~~---------~~~~~~~t~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~   71 (189)
                      .-+++++|..++|||||+.+|....  +.         +..+.+.+.|.++....  +.+   ++..+.+++|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            4589999999999999999997531  11         11111122233333322  222   45568899999999999


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEE
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYK  135 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~  135 (189)
                      |...+...++.+|++++|+|+++.........|.... .  .++|+++|+||.|+.+..                ..++.
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~  163 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL  163 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence            9988899999999999999998865554554554322 2  378999999999974321                13799


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      +||++|.|++++++++.+.+...
T Consensus       164 iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        164 VSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             EecCCCCCHHHHHHHHHHhCccc
Confidence            99999999999999998877543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=3.2e-19  Score=144.86  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHHhc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSYYK   81 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   81 (189)
                      +|+++|.+|||||||+|+|.+........ .+.+..+.......+.+  ..+.+|||||...        +.......++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            58999999999999999999876322211 22222244444455554  4689999999632        2334456778


Q ss_pred             CCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231         82 FAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      .+|++++|+|..+..+.  ..+..|+   ++.  ++|+++|+||+|....           ..+++++||++|.|+++++
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~--~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll  152 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDEEIAKWL---RKS--GKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLL  152 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHH---HHh--CCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHH
Confidence            99999999999874332  2233333   232  7999999999986432           1278999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++.+.+..
T Consensus       153 ~~i~~~l~~  161 (429)
T TIGR03594       153 DAILELLPE  161 (429)
T ss_pred             HHHHHhcCc
Confidence            999887744

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.82  E-value=3e-19  Score=128.76  Aligned_cols=132  Identities=16%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~   75 (189)
                      ....+|+++|++|+|||||++++.+..+....  .++.+.+.....+..++   .+.+||+||...          +..+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLART--SKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc--cCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            45789999999999999999999987643222  22333233333333332   589999999532          2222


Q ss_pred             hHHHhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCce
Q psy17231         76 TSSYYK---FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISST  133 (189)
Q Consensus        76 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~  133 (189)
                      ...+++   .++++++|+|++++-+.... .++..+..  .++|+++++||+|+...                   ..++
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            233444   35799999999875443333 22233332  37999999999886421                   1278


Q ss_pred             EEeeccCCCCHH
Q psy17231        134 YKTSCKTGEGVE  145 (189)
Q Consensus       134 ~~~Sa~~~~~i~  145 (189)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.81  E-value=1.6e-18  Score=129.78  Aligned_cols=142  Identities=18%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----c---chHHHhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----S---ITSSYYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~   82 (189)
                      +++++|++|+|||||+++|.+........+..|.  +.....+.+.+  ..+++||+||..+..    .   .....++.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~--~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~   77 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTL--TCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART   77 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccc--cceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence            7899999999999999999977643333223332  33344444544  578999999975433    1   22356889


Q ss_pred             CcEEEEEEeCCChh-hHHHHHHHHH----------------------------------------HH-------------
Q psy17231         83 AEAAILVFSLDNAA-SFHVLSQHLL----------------------------------------EI-------------  108 (189)
Q Consensus        83 ~~~~i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~-------------  108 (189)
                      +|++++|+|+++++ ..+.+...+.                                        .+             
T Consensus        78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~  157 (233)
T cd01896          78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI  157 (233)
T ss_pred             CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence            99999999998765 3332222221                                        00             


Q ss_pred             -------------HHhCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        109 -------------VTYAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       109 -------------~~~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                   ......+|+++|+||+|+...        ...++++||++|.|++++|+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         101124799999999997432        23689999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG4423|consensus

Probab=99.81  E-value=5.2e-22  Score=138.51  Aligned_cols=151  Identities=26%  Similarity=0.436  Sum_probs=130.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      -++++|+|..|+|||+++.+.....+...+  ..|+|.++..+...++.. .+++++||..|+++|..+..-+++.+++.
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~y--RAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHY--RATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHH--HHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            379999999999999999999988875555  888998988877766544 46789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc-----------------cCCceEEeeccCCCCH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN-----------------LISSTYKTSCKTGEGV  144 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~-----------------~~~~~~~~Sa~~~~~i  144 (189)
                      ++|||+++..+|+.+.+|.+++....     .-.|+++..||||+..                 ....++++|+|.+.|+
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            99999999999999999999987754     3478899999998642                 2347899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy17231        145 EEMFADIGRQLILSNR  160 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~  160 (189)
                      +|+-..+++++.....
T Consensus       183 ~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  183 PEAQRELVEKILVNDE  198 (229)
T ss_pred             hHHHHHHHHHHHhhcc
Confidence            9999999998876653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=6.6e-19  Score=150.46  Aligned_cols=143  Identities=20%  Similarity=0.206  Sum_probs=99.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccchHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--------ASITSSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~   79 (189)
                      ..+|+|+|.+|||||||+|+|.+........ .+++..+.......+.+  ..+.+|||||....        .......
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4689999999999999999999765422111 22222233333333444  46899999997632        2233456


Q ss_pred             hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +..+|++++|+|+++.-  ... ..|...+..  .++|+++|+||+|+...           ....+++||++|.|++++
T Consensus       352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eL  427 (712)
T PRK09518        352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDL  427 (712)
T ss_pred             HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHH
Confidence            78999999999997642  222 234444443  38999999999986421           125688999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        148 FADIGRQLIL  157 (189)
Q Consensus       148 ~~~i~~~i~~  157 (189)
                      |+++++.+.+
T Consensus       428 l~~i~~~l~~  437 (712)
T PRK09518        428 LDEALDSLKV  437 (712)
T ss_pred             HHHHHHhccc
Confidence            9999988754

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=1.4e-18  Score=144.37  Aligned_cols=143  Identities=15%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEEEE------------ECCeEEEEEEEeCCCcccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKEYK------------VDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~   72 (189)
                      +..-|+++|.+++|||||+++|.+..+......  ..+++.........            ++.....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            455799999999999999999998766432211  22223222211100            0001123889999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------
Q psy17231         73 ASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------  129 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------  129 (189)
                      ..++...+..+|++++|+|+++   +++++.+..+    ..  .++|+++++||+|+...                    
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            9988889999999999999987   5565554322    22  27999999999987420                    


Q ss_pred             ---------------------------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 ---------------------------------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 ---------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                                       ..+++.+||++|+|++++++++....
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                                             12779999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=1.8e-18  Score=147.85  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=104.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccc-
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASI-   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-   75 (189)
                      ...+|+++|.+|||||||+|+|.+...........| ..+.....+.+++.  .+.+|||||..+          |..+ 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            458999999999999999999998764322221222 23554555556654  467999999642          1111 


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS  137 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S  137 (189)
                      ....++.+|++++|+|+++..++..+. ++..+...  ++|+++|+||+|+...                  ..+++.+|
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS  602 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS  602 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence            123467899999999999887776664 34444433  7999999999986421                  12558899


Q ss_pred             ccCCCCHHHHHHHHHHHHHHh
Q psy17231        138 CKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~  158 (189)
                      |++|.|++++++.+.+.+.+.
T Consensus       603 Aktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        603 AKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999887753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=3.4e-18  Score=139.11  Aligned_cols=146  Identities=19%  Similarity=0.206  Sum_probs=101.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-----------   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   75 (189)
                      ..++|+++|.+|+|||||+++|.+........ .+....+.....+..++  ..+.+|||||.......           
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            46899999999999999999999765322222 12222233333344444  46789999996543221           


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS  137 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S  137 (189)
                      ....++.+|++++|+|++++.+.... .++..+...  +.|+++|+||+|+...                  ..+++++|
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            12357789999999999987665444 233333333  7999999999986411                  24889999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHh
Q psy17231        138 CKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~  158 (189)
                      |++|.|++++++.+.+.....
T Consensus       326 A~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999988766543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.80  E-value=1.5e-18  Score=144.88  Aligned_cols=139  Identities=19%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      +.|+++|.+++|||||+++|.+..   +..+.  ..++..+.....+...+  ..+.+||+||+++|.......+..+|+
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~--~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~   76 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEK--KRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDA   76 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHh--cCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCE
Confidence            468999999999999999998632   32232  22333344444455554  688999999999988877788889999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------CCceEEeeccC
Q psy17231         86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------ISSTYKTSCKT  140 (189)
Q Consensus        86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------~~~~~~~Sa~~  140 (189)
                      +++|+|+++   +++++.+.    .+..  .++| +++|+||+|+...                     ..+++++||++
T Consensus        77 aILVVDa~~G~~~qT~ehl~----il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t  150 (581)
T TIGR00475        77 ALLVVDADEGVMTQTGEHLA----VLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT  150 (581)
T ss_pred             EEEEEECCCCCcHHHHHHHH----HHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence            999999987   45554442    2222  2677 9999999885210                     24799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQLIL  157 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~  157 (189)
                      |.|++++++++...+..
T Consensus       151 G~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       151 GQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCchhHHHHHHHHHHh
Confidence            99999999988766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00880 Era_like Era (E

Probab=99.80  E-value=1.5e-18  Score=121.50  Aligned_cols=137  Identities=20%  Similarity=0.164  Sum_probs=96.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcCCcE
Q psy17231         13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKFAEA   85 (189)
Q Consensus        13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~   85 (189)
                      ++|++|+|||||++++.+...........+ ............. ...+.+||+||..++..       .....+..+|+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~   78 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGT-TTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADL   78 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCc-EECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence            589999999999999987655422211221 1122222333221 35789999999876543       33447789999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +++|+|.++........ +......  .+.|+++|+||+|....                  ..+++++||+++.|++++
T Consensus        79 il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          79 ILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            99999999887665554 3434333  37999999999774321                  238899999999999999


Q ss_pred             HHHHHHH
Q psy17231        148 FADIGRQ  154 (189)
Q Consensus       148 ~~~i~~~  154 (189)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.80  E-value=2.2e-18  Score=143.96  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc------hHHHh--cCCcEE
Q psy17231         15 GEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI------TSSYY--KFAEAA   86 (189)
Q Consensus        15 G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~   86 (189)
                      |++|||||||+|++.+..+....  .++...+.....+..++  ..+++|||||++++...      ...++  +.+|++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv   76 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV   76 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence            89999999999999987764443  33333455555555555  35799999999877553      22332  378999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      ++|+|.++.+.   ...+..++.+.  ++|+++|+||+|+.+.              ..+++++||++|.|++++++++.
T Consensus        77 I~VvDat~ler---~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        77 VNVVDASNLER---NLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EEEecCCcchh---hHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            99999987542   22333444433  7999999999986421              23789999999999999999998


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.80  E-value=2.4e-19  Score=130.26  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------CCcccceeeeeEEEEEEC--CeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSS--------------SRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~   70 (189)
                      +..+|+++|+.++|||||+.+|....-....              ..+...+...........  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5678999999999999999999744321110              000111122222222222  345688999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------  129 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------  129 (189)
                      +|.......+..+|++++|+|+.+.-.- .....+..+...  ++|+++|.||+|....                     
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeeccccccc-cccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            9888778889999999999999865322 233334344444  7999999999885310                     


Q ss_pred             --CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 --ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 --~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                        ..+++.+||++|.|++++++.+.+.+
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence              13699999999999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG1707|consensus

Probab=99.80  E-value=2.3e-19  Score=144.35  Aligned_cols=156  Identities=19%  Similarity=0.276  Sum_probs=122.2

Q ss_pred             CCCCC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH
Q psy17231          1 MASIK-VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY   79 (189)
Q Consensus         1 m~~~~-~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   79 (189)
                      |+... ...+||+++|+.||||||||-++...+|+++.++.-    +.........-..+...+.|++..++-.......
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl----~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~E   76 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL----PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKE   76 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC----CccccCCccCcCcCceEEEecccccchhHHHHHH
Confidence            44444 567999999999999999999999999877653221    1112112222234557899998766656666788


Q ss_pred             hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC---CCCcEEEEeeccccccc------------------CCceEEee
Q psy17231         80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYA---ENAKIFLCGNNEQCHNL------------------ISSTYKTS  137 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~p~ivv~nK~d~~~~------------------~~~~~~~S  137 (189)
                      ++.++++.++|+++++++++.+ .+|+..+++..   ..+|+|+||||.|....                  ++.+++||
T Consensus        77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS  156 (625)
T KOG1707|consen   77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS  156 (625)
T ss_pred             HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence            9999999999999999999999 79999999887   78999999999775422                  23679999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        138 CKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |++..++.++|.+.+++++..-.
T Consensus       157 A~~~~n~~e~fYyaqKaVihPt~  179 (625)
T KOG1707|consen  157 ALTLANVSELFYYAQKAVIHPTS  179 (625)
T ss_pred             hhhhhhhHhhhhhhhheeeccCc
Confidence            99999999999999998776533

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=1.7e-18  Score=129.84  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--------CC------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFI--------SS------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI   75 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~--------~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   75 (189)
                      +|+++|..|+|||||+++|....-.        ..      .......+.........+.....++++|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753210        00      000111122333333333344578999999999999888


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ....++.+|++++|+|+++.... ....++..+...  ++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence            88899999999999999876432 344555555444  79999999997754

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.79  E-value=7.8e-18  Score=143.93  Aligned_cols=141  Identities=19%  Similarity=0.171  Sum_probs=101.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI----------   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------   75 (189)
                      ++.++|+++|++|||||||+|++.+........    .|.+...+...+.....++.+||+||..++...          
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~----pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i   76 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW----AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI   76 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccCCC----CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH
Confidence            356799999999999999999998776543332    233333333333344567899999998776431          


Q ss_pred             hHHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeecc
Q psy17231         76 TSSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCK  139 (189)
Q Consensus        76 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~  139 (189)
                      ...+  ...+|++++|+|.++.+..   ..+..++.+.  ++|++++.||+|..+              ...+++++||+
T Consensus        77 ~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~  151 (772)
T PRK09554         77 ACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVST  151 (772)
T ss_pred             HHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEee
Confidence            1122  2478999999999886542   2344555554  799999999988642              23489999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGRQL  155 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i  155 (189)
                      +|+|++++.+.+.+..
T Consensus       152 ~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        152 RGRGIEALKLAIDRHQ  167 (772)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=116.51  Aligned_cols=147  Identities=18%  Similarity=0.264  Sum_probs=110.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCC--------C--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISS--------S--SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      .+++...||++.|+.++||||+++++........        .  .+..|+.+++....  +.+ +..+.++|||||++|
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHH
Confidence            3457789999999999999999999987663111        1  11233333433332  333 357899999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEee
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTS  137 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~S  137 (189)
                      .-+|...++++.++|+++|.+.+..+ .....+.-+.... .+|++|++||+|+...               ..+.++.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeee
Confidence            99999999999999999999999888 3333333333332 2999999999887654               23789999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~  154 (189)
                      |..+++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988887765

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.78  E-value=2.7e-18  Score=139.17  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=94.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCe
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDR   57 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~   57 (189)
                      +.+.++|+++|.+++|||||+++|....-.                           +....+...|.+.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            567899999999999999999999733211                           00000111233333333344444


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------  129 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------  129 (189)
                      .+.+.+|||||+++|.......+..+|++++|+|++++..+.....+...+.......|+++++||.|+...        
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence            578999999999887665455567899999999998732222222222222233223579999999987420        


Q ss_pred             ----------------CCceEEeeccCCCCHHHHH
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                                      ..+++.+||++|.|+++..
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                            1268999999999998754

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=1.3e-17  Score=139.18  Aligned_cols=145  Identities=17%  Similarity=0.258  Sum_probs=101.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEEEE--ECCeE-----E-----EEEEEeCCCc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKEYK--VDDRS-----I-----QMQLWDTGGM   69 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~   69 (189)
                      +..++..|+++|.+++|||||+++|.+.........  ..++|..+......  ..+..     .     .+.+|||||+
T Consensus         2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            456778899999999999999999976544322211  12233222211100  00111     1     2689999999


Q ss_pred             cccccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc------------------
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN------------------  128 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~------------------  128 (189)
                      +.|..++...+..+|++++|+|+++   +++++.+..    +..  .++|+++++||+|+..                  
T Consensus        82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            9999888888889999999999987   666655532    222  3799999999999731                  


Q ss_pred             -----------------------------------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        129 -----------------------------------LISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       129 -----------------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                                                         ...+++.+||++|.|++++++.+...
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                                               01257999999999999999887543

>PRK10218 GTP-binding protein; Provisional

Probab=99.77  E-value=1.4e-17  Score=138.96  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh--CCCCCC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY--DTFISS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~--~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      ..-+|+++|..++|||||+++|..  +.+...          .+...+.+.++......+.+..+++++|||||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  333221          11233455666666666666678999999999999999


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------CC
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------IS  131 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~~  131 (189)
                      .+..+++.+|++++|+|+++.... +...++..+...  ++|.|++.||+|..+.                       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            999999999999999999875322 333344444443  7999999999886422                       13


Q ss_pred             ceEEeeccCCC----------CHHHHHHHHHHHHHHh
Q psy17231        132 STYKTSCKTGE----------GVEEMFADIGRQLILS  158 (189)
Q Consensus       132 ~~~~~Sa~~~~----------~i~~~~~~i~~~i~~~  158 (189)
                      +++.+||++|.          ++..+++.++..+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            68999999998          5888888877776433

>KOG0074|consensus

Probab=99.77  E-value=6e-18  Score=113.32  Aligned_cols=145  Identities=18%  Similarity=0.313  Sum_probs=116.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+.+||+++|-.++|||||+..|...+....   .+|.|++.  +.+..++ .+.+++||.+|+...+..|..++...
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenv   86 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENV   86 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhcc
Confidence            346789999999999999999999987664322   55665554  3444444 47899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEG  143 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~  143 (189)
                      |++|+|+|.+|+..|+++...+.++....  ...|+.+.+||+|+.-..                  ..+-+|||.+++|
T Consensus        87 d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg  166 (185)
T KOG0074|consen   87 DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEG  166 (185)
T ss_pred             ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccC
Confidence            99999999999999999988888877765  679999999997753221                  1557789999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQ  154 (189)
Q Consensus       144 i~~~~~~i~~~  154 (189)
                      +..-.+|++..
T Consensus       167 ~~dg~~wv~sn  177 (185)
T KOG0074|consen  167 STDGSDWVQSN  177 (185)
T ss_pred             ccCcchhhhcC
Confidence            88888877643

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.77  E-value=7e-18  Score=136.76  Aligned_cols=145  Identities=14%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhC--CCCC-------------------------CCCCcccceeeeeEEEEEECC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYD--TFIS-------------------------SSSRKSTLGLDNFNKEYKVDD   56 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~-------------------------~~~~~~t~~~~~~~~~~~~~~   56 (189)
                      .+.+.++|+++|..++|||||+.+|...  ....                         ..+.+...|.........+..
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~   82 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET   82 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence            3678899999999999999999999752  1110                         000011112233333333444


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL------  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~------  129 (189)
                      ....+.+||+||+++|.......+..+|++++|+|+++.+++.... .+...+.......|+|+|+||+|+.+.      
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence            4578999999999888765556678899999999999875431111 111122222234689999999987420      


Q ss_pred             ------------------CCceEEeeccCCCCHHHHH
Q psy17231        130 ------------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       130 ------------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                                        ..+++++||++|.|+++.+
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence                              1368999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.77  E-value=3.5e-18  Score=134.95  Aligned_cols=140  Identities=19%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--c-------chHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA--S-------ITSSY   79 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-------~~~~~   79 (189)
                      ..|+|+|-||||||||+|||.+.+.....+ .+.+..|..+....+.+.  +|.++||+|.+...  .       .....
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            679999999999999999999877543332 233333555556666654  58999999987433  1       23456


Q ss_pred             hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHH
Q psy17231         80 YKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~  146 (189)
                      +..||+++||+|....  ..-+.+.+|+.    . .++|+|+|.||+|....           ..+.+.+||..|.|+.+
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~Lr----~-~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~d  155 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKILR----R-SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGD  155 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h-cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHH
Confidence            7789999999998653  12233344433    2 36999999999887522           23779999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        147 MFADIGRQLI  156 (189)
Q Consensus       147 ~~~~i~~~i~  156 (189)
                      +++++++.+.
T Consensus       156 Lld~v~~~l~  165 (444)
T COG1160         156 LLDAVLELLP  165 (444)
T ss_pred             HHHHHHhhcC
Confidence            9999999874

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.77  E-value=7e-18  Score=140.76  Aligned_cols=146  Identities=13%  Similarity=0.152  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh--CCCCCC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY--DTFISS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS   77 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~--~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   77 (189)
                      +|+|+|..++|||||+++|..  +.+...          .+.+...|.++......+.+..+++++|||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999975  222111          11122234444444444444457899999999999998889


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------CCceE
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------ISSTY  134 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~~~~~  134 (189)
                      ..++.+|++++|+|+++.. ..+...|+..+...  ++|+|+|+||+|+.+.                       ..+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl  159 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV  159 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence            9999999999999997632 34555666666654  7999999999886321                       13689


Q ss_pred             EeeccCCC----------CHHHHHHHHHHHHHHh
Q psy17231        135 KTSCKTGE----------GVEEMFADIGRQLILS  158 (189)
Q Consensus       135 ~~Sa~~~~----------~i~~~~~~i~~~i~~~  158 (189)
                      ++||++|.          |++.+|+.+++.+...
T Consensus       160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             echhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            99999996          7999999988877543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.76  E-value=3e-17  Score=116.18  Aligned_cols=135  Identities=18%  Similarity=0.242  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----------ccchHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----------ASITSSY   79 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~   79 (189)
                      .|+++|++|+|||||++++.+..+....  .++.+.+.....+..+.   .+.+||+||....          ......+
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~   75 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLART--SKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY   75 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeee--cCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence            3789999999999999999965554433  33333344333344333   7899999995332          2222333


Q ss_pred             hc---CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccc-------------------ccCCceEE
Q psy17231         80 YK---FAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-------------------NLISSTYK  135 (189)
Q Consensus        80 ~~---~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-------------------~~~~~~~~  135 (189)
                      +.   .++.+++++|.+...  ....+..|+..   .  +.|+++|+||+|..                   ....++++
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  150 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL  150 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence            33   356788999987652  22333444432   2  58999999998852                   11248899


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q psy17231        136 TSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~  154 (189)
                      +||+++.+++++++++.+.
T Consensus       151 ~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         151 FSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EecCCCCCHHHHHHHHHHh
Confidence            9999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.75  E-value=7.4e-17  Score=127.85  Aligned_cols=144  Identities=19%  Similarity=0.218  Sum_probs=105.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS   78 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   78 (189)
                      ..+|++|+|.||+|||||+|.|.+.+--..++...| ..+.....+.+++  +.+.+.||+|..+-...        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT-TRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT-TRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC-ccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            468999999999999999999998764333322222 2355566667776  67899999998755442        255


Q ss_pred             HhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------CCceEEeeccCCCCHHHH
Q psy17231         79 YYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~~~~~~~Sa~~~~~i~~~  147 (189)
                      .+..||.+++|+|.+.+.. .+....+     ....+.|+++|.||.|+...          ..+++.+|+++|.|++.+
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLALIE-----LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHHHHH-----hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHH
Confidence            6789999999999988521 1111111     22257999999999998653          125799999999999999


Q ss_pred             HHHHHHHHHHh
Q psy17231        148 FADIGRQLILS  158 (189)
Q Consensus       148 ~~~i~~~i~~~  158 (189)
                      .+++.+.+...
T Consensus       368 ~~~i~~~~~~~  378 (454)
T COG0486         368 REAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHhhc
Confidence            99988877655

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.75  E-value=1.9e-17  Score=133.30  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=98.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCcccceeeeeEE------------EEEE----CC------eEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI---SSSSRKSTLGLDNFNK------------EYKV----DD------RSIQ   60 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~---~~~~~~~t~~~~~~~~------------~~~~----~~------~~~~   60 (189)
                      +++++|+++|..++|||||+++|.+....   .+..+..|+...+...            .+..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            57899999999999999999999643211   1111111111111000            0001    01      1357


Q ss_pred             EEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231         61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------  129 (189)
Q Consensus        61 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------  129 (189)
                      +.+||+||+++|...+......+|++++|+|+++.....+....+..+ ......|+++++||+|+...           
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            899999999999877777778899999999998642111222222222 22223679999999886321           


Q ss_pred             ---------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ---------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ---------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                               ..+++++||++|.|++++++++...+.
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence                     236899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.75  E-value=1.3e-17  Score=123.06  Aligned_cols=135  Identities=18%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------CCCcccceeeeeEEEEEECCeEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISS---------------------------SSRKSTLGLDNFNKEYKVDDRSIQMQ   62 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~---------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~   62 (189)
                      +|+++|.+|+|||||+++|....-...                           ...+...+.........+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999964321110                           00000011122222222222345789


Q ss_pred             EEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------
Q psy17231         63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------  129 (189)
Q Consensus        63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------  129 (189)
                      +|||||+++|.......+..+|++++|+|+++...- ....... +.......++|+|+||.|+.+.             
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~  158 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL  158 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence            999999988766556678899999999999875321 1111111 2222223567889999886421             


Q ss_pred             ---------CCceEEeeccCCCCHHH
Q psy17231        130 ---------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       130 ---------~~~~~~~Sa~~~~~i~~  146 (189)
                               ..+++.+||++|.|+++
T Consensus       159 ~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         159 AFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence                     12489999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.74  E-value=3.3e-17  Score=131.92  Aligned_cols=149  Identities=15%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEE------------EEEC------C----e
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKE------------YKVD------D----R   57 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~------------~~~~------~----~   57 (189)
                      ..+.++++|+++|+.++|||||+.+|.+..   ...+..+..|+...+....            +...      +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            556789999999999999999999996431   1111111222221110000            1000      0    1


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----  129 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----  129 (189)
                      ...+.+||+||+++|..........+|++++|+|++++    ++.+.+.    .+. .....|+++|+||+|+...    
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIGIKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcCCCcEEEEEEeeccccchhHH
Confidence            25789999999988866555555677999999999853    3333322    122 2223579999999886320    


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                      ..+++++||++|.|++++++++...+.
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence                            136899999999999999999887664

>COG1159 Era GTPase [General function prediction only]

Probab=99.74  E-value=5.8e-17  Score=121.88  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ch
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------IT   76 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~   76 (189)
                      .++.-.|+|+|.||||||||+|++.+.+.........|+. ......+..+  ..++.++||||..+-..        ..
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-hheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            4556678999999999999999999988765555444432 2223333333  46889999999754333        22


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccC
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKT  140 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~  140 (189)
                      ...+.++|+++||.|++....- .....+..+..  .+.|++++.||.|....                ....+.+||++
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGP-GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCc-cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            4456789999999999875321 11222333333  36899999999773221                12779999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy17231        141 GEGVEEMFADIGRQLILS  158 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~  158 (189)
                      |.|++.+.+.+...+.+.
T Consensus       157 g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             cCCHHHHHHHHHHhCCCC
Confidence            999999999988876544

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=4.4e-17  Score=120.60  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC---------------CCCcccceeeeeEE--EEEE---CCeEEEEEEEeCCCc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISS---------------SSRKSTLGLDNFNK--EYKV---DDRSIQMQLWDTGGM   69 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~---------------~~~~~t~~~~~~~~--~~~~---~~~~~~~~i~D~~g~   69 (189)
                      +|+++|+.|+|||||+++|........               .......+..+...  .+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999986543221               00011112222222  1211   345688999999999


Q ss_pred             cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      .+|.......+..+|++++|+|+++..++. ...++......  +.|+++|+||.|..
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc--CCCEEEEEECcccC
Confidence            999888888899999999999998766543 23444444333  69999999999963

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.72  E-value=2.5e-16  Score=114.79  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=90.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      ++++|.++|..++|||||+++|.....            .+....+...|.........+......+.++||||+.+|..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            468999999999999999999975310            00111111223333333344444456789999999988877


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc-----------------------C
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL-----------------------I  130 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~-----------------------~  130 (189)
                      .....+..+|++++|+|++..-. .+....+..+...  ++| +|++.||.|+...                       .
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            67777889999999999876421 1222333333333  566 7899999885210                       1


Q ss_pred             CceEEeeccCCCCHH
Q psy17231        131 SSTYKTSCKTGEGVE  145 (189)
Q Consensus       131 ~~~~~~Sa~~~~~i~  145 (189)
                      .+++.+||++|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            268999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.72  E-value=4.3e-17  Score=116.24  Aligned_cols=142  Identities=20%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHH---HhcCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSS---YYKFA   83 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~   83 (189)
                      .-.|+++|+.|+|||+|+.+|..+....+....   . ..  ..+.. ......+.++|+||+.+.+.....   ....+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e-~n--~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~   76 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---E-NN--IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNA   76 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S---S-EE--EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---c-CC--ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhC
Confidence            457899999999999999999998654332111   0 11  11111 122346899999999988764433   47789


Q ss_pred             cEEEEEEeCC-ChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231         84 EAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus        84 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      .++|||+|.+ .+..+..+..++..+....    ..+|+++++||+|+..         |+.-.-|.+.++.-+..+...
T Consensus        77 k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~---------A~~~~~Ik~~LE~Ei~~lr~t  147 (181)
T PF09439_consen   77 KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT---------AKPPKKIKKLLEKEIDKLRKT  147 (181)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT------------HHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc---------cCCHHHHHHHHHHHHHHHHHH
Confidence            9999999987 4556777777776666543    6799999999999965         455556777788777777777


Q ss_pred             hhhhhh
Q psy17231        159 NRSRLE  164 (189)
Q Consensus       159 ~~~~~~  164 (189)
                      +.....
T Consensus       148 r~~~l~  153 (181)
T PF09439_consen  148 RSKSLE  153 (181)
T ss_dssp             HHHHHH
T ss_pred             Hhcccc
Confidence            665443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1423|consensus

Probab=99.72  E-value=1.5e-16  Score=119.57  Aligned_cols=146  Identities=17%  Similarity=0.151  Sum_probs=101.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----------   74 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------   74 (189)
                      .+...|+++|+||+|||||.|.+.+.+..+......|.   .....--+.....++.++||||...-..           
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT---r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT---RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccce---eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            44689999999999999999999998887766555553   2222222333457899999999642211           


Q ss_pred             -chHHHhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------------------
Q psy17231         75 -ITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------  129 (189)
Q Consensus        75 -~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------  129 (189)
                       ........||++++|+|+++...  .+ ...+..+..+ ..+|-|+|.||.|+..-                       
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence             12445668999999999997332  22 2333344444 47999999999442100                       


Q ss_pred             ---------------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 ---------------------ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 ---------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                                           ...+|.+||++|+||+++-+++..+...
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence                                 1257999999999999999999876543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.72  E-value=4.2e-17  Score=121.17  Aligned_cols=135  Identities=15%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---------------------------CCCCCCCcccceeeeeEEEEEECCeEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT---------------------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQ   62 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~---------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   62 (189)
                      +|+++|..++|||||+.+|....                           +.+....+...|.........+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999995321                           111111111122333333333333456899


Q ss_pred             EEeCCCccccccchHHHhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231         63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---F---HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------  129 (189)
Q Consensus        63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------  129 (189)
                      +||+||+.+|.......+..+|++++|+|+++...   |   .+....+... .....+|+++++||.|+...       
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence            99999998777666666788999999999987421   1   1122222222 22234789999999987520       


Q ss_pred             -------------------CCceEEeeccCCCCHH
Q psy17231        130 -------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus       130 -------------------~~~~~~~Sa~~~~~i~  145 (189)
                                         ..+++.+||++|.|++
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                               1258999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=4.5e-16  Score=113.84  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=92.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccccee---eeeEEEEEECCeEEEEEEEeCCCccccccchHHH-----
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGL---DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY-----   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----   79 (189)
                      ++||+++|++|+|||||+|.+.+.......  ..+.+.   ......+.... ...+.+||+||..+.......+     
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~--~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~   77 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEG--AAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMK   77 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCC--ccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhC
Confidence            479999999999999999999986543221  111110   11111111111 2367999999976433222222     


Q ss_pred             hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc------------------------------
Q psy17231         80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN------------------------------  128 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~------------------------------  128 (189)
                      +..+|++++|.+  +  .|.+. ..|+..+...  +.|+++|+||+|+..                              
T Consensus        78 ~~~~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          78 FSEYDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             ccCcCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            556787777633  2  23344 3455555554  689999999988621                              


Q ss_pred             ---cCCceEEeecc--CCCCHHHHHHHHHHHHHHhhhhh
Q psy17231        129 ---LISSTYKTSCK--TGEGVEEMFADIGRQLILSNRSR  162 (189)
Q Consensus       129 ---~~~~~~~~Sa~--~~~~i~~~~~~i~~~i~~~~~~~  162 (189)
                         ...++|.+|+.  .+.++..+.+.+...+.+.+..+
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~  190 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV  190 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence               01378889998  67899999999988887665443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.70  E-value=1.5e-16  Score=108.79  Aligned_cols=121  Identities=19%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----ccccchHHHhcCCcE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----RVASITSSYYKFAEA   85 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~   85 (189)
                      ||+++|+.|+|||||+++|.+....  +  ..|..       +.+.     =.++||||..    .|..-.-....++|.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~--~KTq~-------i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~   66 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--Y--KKTQA-------IEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADV   66 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--c--Cccce-------eEec-----ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence            8999999999999999999976542  2  11111       1111     1469999942    222233445568999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--cc-------------CCceEEeeccCCCCHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--NL-------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--~~-------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +++|.|++++.+.     +-..+.... ++|+|-|.||.|+.  ..             ....|++|+.+|+||+++.++
T Consensus        67 V~ll~dat~~~~~-----~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   67 VLLLQDATEPRSV-----FPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEEEecCCCCCcc-----CCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999999987532     111111222 58999999999877  11             236799999999999999988


Q ss_pred             HH
Q psy17231        151 IG  152 (189)
Q Consensus       151 i~  152 (189)
                      +-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            63

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04169 RF3 RF3 subfamily

Probab=99.70  E-value=2e-16  Score=120.60  Aligned_cols=118  Identities=14%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCCC-----------C---CC---cccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT-FISS-----------S---SR---KSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~-~~~~-----------~---~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      -+|+++|.+|+|||||+++|.... ....           .   ++   ....+.........+....+++++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997421 1000           0   00   0001223333334445556789999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      +|.......++.+|++++|+|+++... .....++.....  .++|+++++||+|+.+.
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            888767778889999999999987532 222334433333  37999999999987543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.69  E-value=1.1e-15  Score=128.18  Aligned_cols=138  Identities=16%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD---TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      -|.++|..++|||||+++|.+.   .+..+..+..|+  +.....+...+ ...+.+||+||+++|.......+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI--~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTI--DLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceE--EeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            4789999999999999999853   233333333333  22222222222 23579999999999877666778899999


Q ss_pred             EEEEeCCC---hhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc--------------------CCceEEeeccCCC
Q psy17231         87 ILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------ISSTYKTSCKTGE  142 (189)
Q Consensus        87 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~  142 (189)
                      ++|+|+++   +++.+.+.     +.... ++| +|||+||+|+...                    ..+++++||++|.
T Consensus        79 lLVVda~eg~~~qT~ehl~-----il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512         79 LLVVACDDGVMAQTREHLA-----ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEEEECCCCCcHHHHHHHH-----HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            99999986   33333332     22222 455 5799999886321                    1378999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQLI  156 (189)
Q Consensus       143 ~i~~~~~~i~~~i~  156 (189)
                      |++++++.+.....
T Consensus       153 gI~~L~~~L~~~~~  166 (614)
T PRK10512        153 GIDALREHLLQLPE  166 (614)
T ss_pred             CCHHHHHHHHHhhc
Confidence            99999999876543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=2.6e-15  Score=118.86  Aligned_cols=146  Identities=22%  Similarity=0.204  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------c
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----------I   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~   75 (189)
                      .++||+|+|-||+|||||+|++.+.+-....+ .+.+..+.....+.++++  ++.++||+|..+-..           -
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehh
Confidence            46999999999999999999999876433332 222223555556666664  679999999653221           1


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK  135 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~  135 (189)
                      ....+..++++++|.|++.+-+-+. ......+.+.  +.++++|.||.|+...                    ..+.+.
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            2445678999999999988754222 2233333333  8999999999886432                    237899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      +||++|.++.++|+.+.......
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHh
Confidence            99999999999999987765444

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=1.5e-15  Score=115.88  Aligned_cols=116  Identities=13%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--C------------CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTF--I------------SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI   75 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~--~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   75 (189)
                      +|.++|.+|+|||||+++|....-  .            +..+.....+.........+.....++.+|||||+.+|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999963111  0            00000111122333322333233468899999999888888


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      +...++.+|++++|+|+.+...- +....+..+...  ++|++++.||.|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            88899999999999999764321 222333333333  799999999988643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG2262 HflX GTPases [General function prediction only]

Probab=99.67  E-value=5e-15  Score=115.73  Aligned_cols=151  Identities=21%  Similarity=0.145  Sum_probs=113.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--ch------H
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--IT------S   77 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~------~   77 (189)
                      ..-..|.++|..|+|||||+|+|.+......+.-+.|+  +..+..+.+.+ ...+.+-||.|..+.-.  +.      -
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATL--dpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATL--DPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccc--cCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            34578899999999999999999988777677667776  55566666654 34678999999764322  11      2


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC----------CceEEeeccCCCCHHH
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI----------SSTYKTSCKTGEGVEE  146 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~----------~~~~~~Sa~~~~~i~~  146 (189)
                      .....+|.+++|+|++++...+.+..-..-+.... ..+|+|+|.||.|+....          ...+.+||++|.|+++
T Consensus       267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~  346 (411)
T COG2262         267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDL  346 (411)
T ss_pred             HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHH
Confidence            23447899999999999977777766665555543 579999999997743211          1479999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy17231        147 MFADIGRQLILSN  159 (189)
Q Consensus       147 ~~~~i~~~i~~~~  159 (189)
                      +++.|...+....
T Consensus       347 L~~~i~~~l~~~~  359 (411)
T COG2262         347 LRERIIELLSGLR  359 (411)
T ss_pred             HHHHHHHHhhhcc
Confidence            9999998887543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.67  E-value=1.4e-15  Score=113.20  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc--------------c-------cceeeeeEEEE-------------EEC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRK--------------S-------TLGLDNFNKEY-------------KVD   55 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~--------------~-------t~~~~~~~~~~-------------~~~   55 (189)
                      ||+++|+.++|||||+++|..+.+.......              .       .+|++......             ...
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999876654321100              0       01111110000             001


Q ss_pred             CeEEEEEEEeCCCccccccchHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----  129 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----  129 (189)
                      .....+.++|+||+++|.......+  ..+|++++|+|++.... .....++..+...  ++|+++|.||+|+.+.    
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~  157 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQ  157 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence            1134689999999988865433333  36899999999876432 2223344444443  7999999999774210    


Q ss_pred             ---------------------------------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231        130 ---------------------------------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus       130 ---------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                                                             ..++|.+||.+|.|++++.+.+.
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence                                                   12889999999999999887753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=5e-15  Score=99.25  Aligned_cols=106  Identities=21%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISS-SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSY   79 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~   79 (189)
                      +|+++|.+|+|||||+|+|.+...... ..+..|.  ......+...+.  .+.++||||...-..         .....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~--~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTR--DPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQ   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSS--SEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccccccee--eeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence            689999999999999999997643222 2222222  223344455554  457999999753211         12333


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN  123 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (189)
                      +..+|++++|+|.+++.. +.....+..+.   .+.|+++|.||
T Consensus        77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            478899999999877422 22333334443   38999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=9.2e-16  Score=131.05  Aligned_cols=117  Identities=14%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCC--------CCCC---CC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTF--------ISSS---SR---KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~--------~~~~---~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      ...+|+|+|..|+|||||+++|....-        ....   +.   ....+................+++|||||+.+|
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            457999999999999999999975311        0000   00   000111222212222233578999999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      .......++.+|++++|+|+++.........| ..+...  ++|+++++||+|+
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~  137 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDR  137 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCC
Confidence            88888999999999999999887655544444 333333  7999999999663

>PRK12736 elongation factor Tu; Reviewed

Probab=99.66  E-value=2.7e-15  Score=120.45  Aligned_cols=148  Identities=12%  Similarity=0.088  Sum_probs=97.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      ..++++|+++|..++|||||+++|.+...            .+....+...|.........+......+.+||+||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            56789999999999999999999975211            111111112233444444445444567899999999888


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc----------------------
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL----------------------  129 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~----------------------  129 (189)
                      .......+..+|++++|+|++.... .+....+..+...  ++| +|++.||.|+...                      
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  165 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence            7655666678999999999976321 1222233333333  677 6789999885310                      


Q ss_pred             -CCceEEeeccCCC--------CHHHHHHHHHHHH
Q psy17231        130 -ISSTYKTSCKTGE--------GVEEMFADIGRQL  155 (189)
Q Consensus       130 -~~~~~~~Sa~~~~--------~i~~~~~~i~~~i  155 (189)
                       ..+++.+||++|.        +++++++.+.+.+
T Consensus       166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence             1378999999983        4666666666554

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=2.5e-15  Score=111.41  Aligned_cols=115  Identities=15%  Similarity=0.152  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC------------CCCcccceeeeeE--EEEEEC--------CeEEEEEEEeCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISS------------SSRKSTLGLDNFN--KEYKVD--------DRSIQMQLWDTG   67 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~------------~~~~~t~~~~~~~--~~~~~~--------~~~~~~~i~D~~   67 (189)
                      +|+++|..++|||||+.+|....-...            ...+..-|.....  ....+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999974321100            0000011111111  122222        346889999999


Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      |+.+|.......++.+|++++|+|+++....+. ...+.....  .++|+++|+||.|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCcc
Confidence            999999988999999999999999988654433 223333333  368999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.65  E-value=6.8e-15  Score=121.36  Aligned_cols=143  Identities=19%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH-
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY-   79 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-   79 (189)
                      +..++.++|+||||||||+|++.+......+.+..|+  +.....+...+  .++++.|.||......      +...+ 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTV--Ekkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~l   77 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTV--EKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFL   77 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeE--EEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence            4567999999999999999999998887777444443  55555555555  3589999999765543      22223 


Q ss_pred             h-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCCH
Q psy17231         80 Y-KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGV  144 (189)
Q Consensus        80 ~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i  144 (189)
                      . ...|+++-|.|++|.+.--.+   --++.+.  ++|++++.|+.|..+              +..|++.+||++|.|+
T Consensus        78 l~~~~D~ivnVvDAtnLeRnLyl---tlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          78 LEGKPDLIVNVVDATNLERNLYL---TLQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             hcCCCCEEEEEcccchHHHHHHH---HHHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence            2 356999999999998743222   2234444  799999999977432              2459999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy17231        145 EEMFADIGRQLILS  158 (189)
Q Consensus       145 ~~~~~~i~~~i~~~  158 (189)
                      +++.+.+.+....+
T Consensus       153 ~~l~~~i~~~~~~~  166 (653)
T COG0370         153 EELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999887654443

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=2.9e-15  Score=114.54  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC----Ccc------------cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSS----RKS------------TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~----~~~------------t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      +|+++|.+|+|||||+++|....-.....    ...            ..........+.+.  ...+++|||||+.+|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            58999999999999999997432110000    000            01111112233333  4678999999998887


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      ......++.+|++++|+|+++.........| ..+...  ++|.++++||.|.
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~--~~p~iivvNK~D~  128 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA--GIPRIIFINKMDR  128 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCcc
Confidence            7788889999999999999876544323323 233333  7999999999663

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12735 elongation factor Tu; Reviewed

Probab=99.65  E-value=4.1e-15  Score=119.49  Aligned_cols=149  Identities=13%  Similarity=0.081  Sum_probs=96.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhC-------C-----CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYD-------T-----FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~-------~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .+.++++|+++|.+++|||||+++|...       .     ..+....+...|.+.......+......+.++||||+.+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3577899999999999999999999852       1     111111111223343333344444456789999999988


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~---------------------  129 (189)
                      |.......+..+|++++|+|+.+... .+....+..+...  ++|.+ ++.||+|+...                     
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            76655566778999999999986421 1222333333332  67865 57999886311                     


Q ss_pred             --CCceEEeeccCCC----------CHHHHHHHHHHHH
Q psy17231        130 --ISSTYKTSCKTGE----------GVEEMFADIGRQL  155 (189)
Q Consensus       130 --~~~~~~~Sa~~~~----------~i~~~~~~i~~~i  155 (189)
                        ..+++.+||++|.          ++.++++.+.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence              1367999999985          5666666665543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.64  E-value=4e-15  Score=120.86  Aligned_cols=141  Identities=15%  Similarity=0.161  Sum_probs=96.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCC---------------------------CCCCCCcccceeeeeEEEEEEC
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTF---------------------------ISSSSRKSTLGLDNFNKEYKVD   55 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~---------------------------~~~~~~~~t~~~~~~~~~~~~~   55 (189)
                      +.+.++++|+++|..++|||||+.+|+...-                           .+..+.+..-|.........+.
T Consensus         2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~   81 (447)
T PLN00043          2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE   81 (447)
T ss_pred             CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence            3467889999999999999999999963110                           0111111112334444444455


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhCCCC-cEEEEeeccccc
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-------VLSQHLLEIVTYAENA-KIFLCGNNEQCH  127 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-p~ivv~nK~d~~  127 (189)
                      .....++++|+||+++|.......+..+|++++|+|+++. .|+       +....+..+..  .++ ++|+++||+|+.
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCC
Confidence            5567899999999999988888888999999999999873 232       33332222222  256 578899999954


Q ss_pred             c---------------------c-----CCceEEeeccCCCCHHH
Q psy17231        128 N---------------------L-----ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       128 ~---------------------~-----~~~~~~~Sa~~~~~i~~  146 (189)
                      .                     .     ..+|+++||++|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1                     0     13689999999999854

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.64  E-value=5e-15  Score=119.00  Aligned_cols=136  Identities=13%  Similarity=0.054  Sum_probs=88.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .+.++++|+++|..++|||||+++|....            ..+....+...|.+.......+......+.+|||||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            46778999999999999999999997321            111111111123333344444544456789999999998


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~---------------------  129 (189)
                      |..........+|++++|+|++....- +....+..+...  ++|.+ +++||+|+...                     
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            876555556788999999999863211 112222223332  57755 68999885310                     


Q ss_pred             --CCceEEeeccCCC
Q psy17231        130 --ISSTYKTSCKTGE  142 (189)
Q Consensus       130 --~~~~~~~Sa~~~~  142 (189)
                        ..+++.+||++|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence              0478999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077|consensus

Probab=99.64  E-value=7.5e-16  Score=105.96  Aligned_cols=141  Identities=16%  Similarity=0.229  Sum_probs=110.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.=|++++|-.|+|||||++.|...+....   .||.  ...+....+.+  .++..+|.+|+..-+..|..++..++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh---vPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH---VPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc---CCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            456899999999999999999987775332   4443  22233344444  5789999999988888999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------------------ceE
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------------------STY  134 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------------------~~~  134 (189)
                      ++.+|+.|.+.|.+.+..+..+....  .+.|+++.+||.|..+...                              ..|
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            99999999999999998888877765  7899999999977554321                              557


Q ss_pred             EeeccCCCCHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      .||...+.+..+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            78888887777777776543

>CHL00071 tufA elongation factor Tu

Probab=99.63  E-value=8.9e-15  Score=118.01  Aligned_cols=138  Identities=15%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .+.+.++|+++|.+++|||||+++|....-.            +....+...|.........+......+.+.|+||+.+
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            4678899999999999999999999864110            1111111123333333333444446788999999988


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------  129 (189)
                      |.......+..+|++++|+|+...-. .+....+..+...  ++| +|++.||.|+...                     
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            87666677789999999999875421 2222333333333  678 7789999885320                     


Q ss_pred             --CCceEEeeccCCCCH
Q psy17231        130 --ISSTYKTSCKTGEGV  144 (189)
Q Consensus       130 --~~~~~~~Sa~~~~~i  144 (189)
                        ..+++.+||.+|.|+
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence              137899999999754

>KOG1489|consensus

Probab=99.63  E-value=6.6e-15  Score=111.34  Aligned_cols=141  Identities=20%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~   82 (189)
                      .+-++|-||+|||||++++...+-........|+  .....++.+++. ..+.+=|.||..+-.+       ..-..++.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL--~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTL--RPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeee--ccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            5679999999999999999987654443333333  333335555543 3489999999765332       22445668


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc------------CC-ceEEeeccCCCC
Q psy17231         83 AEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL------------IS-STYKTSCKTGEG  143 (189)
Q Consensus        83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~------------~~-~~~~~Sa~~~~~  143 (189)
                      ++..++|+|++..   +-+++++....++..+.   .+.|.++|+||.|....            .. .++.+||+++++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccc
Confidence            8999999999988   77777776666666554   68999999999997322            11 389999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        144 VEEMFADIGR  153 (189)
Q Consensus       144 i~~~~~~i~~  153 (189)
                      +.++.+.+-.
T Consensus       355 l~~ll~~lr~  364 (366)
T KOG1489|consen  355 LEELLNGLRE  364 (366)
T ss_pred             hHHHHHHHhh
Confidence            9999887643

>cd01850 CDC_Septin CDC/Septin

Probab=99.63  E-value=4.2e-15  Score=113.85  Aligned_cols=118  Identities=14%  Similarity=0.202  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---c
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSS--------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---I   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~   75 (189)
                      -.++|+++|.+|+|||||+|+|.+..+.....        ..+|.........+..++....+.+|||||..+...   .
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            36899999999999999999999887654421        344555555555666677778999999999643321   0


Q ss_pred             -----------------------hHHHhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         76 -----------------------TSSYYK--FAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        76 -----------------------~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                                             +...+.  .+|+++++++.+.. .+... ...++.+.   ..+|+|+|+||+|...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCC
Confidence                                   001222  34666666665542 12222 22233333   2699999999999743

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=9.7e-15  Score=104.43  Aligned_cols=141  Identities=17%  Similarity=0.209  Sum_probs=96.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccchH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASITS   77 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~   77 (189)
                      ..-|+++|-+|||||||||+|.+.+-....  ..|+|.+.....+.+++.   +.+.|.||.-.          +..+..
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArt--SktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLART--SKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeec--CCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            468999999999999999999986643222  556676777777777763   78999999532          222333


Q ss_pred             HHhcC---CcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccccC------------------Cc--e
Q psy17231         78 SYYKF---AEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNLI------------------SS--T  133 (189)
Q Consensus        78 ~~~~~---~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~--~  133 (189)
                      .+++.   ..++++++|+...-.  ..+ ..+.-+..  .++|++|++||+|+-...                  ..  +
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~  174 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV  174 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence            44433   457788888764422  221 22222233  389999999998854321                  12  6


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      +..|+.++.|++++...|.+.+..
T Consensus       175 ~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         175 VLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEecccccCHHHHHHHHHHHhhc
Confidence            788999999999999988877643

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=4.2e-15  Score=110.62  Aligned_cols=151  Identities=18%  Similarity=0.222  Sum_probs=106.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE-EEECCeEEEEEEEeCCCccc-------cccch
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE-YKVDDRSIQMQLWDTGGMER-------VASIT   76 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~   76 (189)
                      ..++++++++|.+|+|||||||+|+.+...+...-..  +.+..... ..+++  -.+.+||+||..+       +....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~--~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV--GTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc--CCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence            4578999999999999999999999765543331111  11222221 12222  3679999999765       44456


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC--------------------------
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI--------------------------  130 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~--------------------------  130 (189)
                      ..++...|.++++.+..|+.-- --..+++++....-+.+++++.|.+|.....                          
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~-~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALG-TDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HHHhhhccEEEEeccCCCcccc-CCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            7778889989999998887521 2234555555555569999999998865431                          


Q ss_pred             ------CceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        131 ------SSTYKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       131 ------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                            .+++.+|.+.+.|++++..+++.++.....
T Consensus       191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence                  277888999999999999999988765433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.61  E-value=4.9e-15  Score=119.34  Aligned_cols=136  Identities=18%  Similarity=0.132  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCCCCcccceeeeeEEEEEECCeEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFI-----------------------------SSSSRKSTLGLDNFNKEYKVDDRSI   59 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~~   59 (189)
                      ++|+++|..++|||||+.+|+...-.                             +..+.+..-|.........+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999632210                             0000011112223333333333446


Q ss_pred             EEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------
Q psy17231         60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------  129 (189)
Q Consensus        60 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------  129 (189)
                      .+.+|||||+++|.......+..+|++++|+|+.....- +....+ .+.......++|++.||.|+...          
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~-~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHS-YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHH-HHHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence            889999999998876555677899999999998754211 111111 12222223568999999885310          


Q ss_pred             ------------CCceEEeeccCCCCHHH
Q psy17231        130 ------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       130 ------------~~~~~~~Sa~~~~~i~~  146 (189)
                                  ..+++.+||++|.|+++
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence                        12589999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.61  E-value=2.3e-14  Score=106.48  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----chHHHhcCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSS-RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----ITSSYYKFA   83 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~   83 (189)
                      ||+++|++|+||||+.+.+..+..+.... -.+|.  +.....+...+ ...+++||+||+..+..     .....++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~--~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI--DVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-------SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC--CceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            79999999999999999998665432221 12333  22233333333 35889999999976543     457789999


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccc---------------------ccC---CceEEe
Q psy17231         84 EAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH---------------------NLI---SSTYKT  136 (189)
Q Consensus        84 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~---------------------~~~---~~~~~~  136 (189)
                      .++|+|+|+.+.   +.+..+...+..+.+..+++.+.|+..|.|+.                     +..   ..++.|
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            999999999843   45566667777777778999999999997742                     111   256777


Q ss_pred             eccCCCCHHHHHHHHHHHHHHh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      |--+ +.+-+.|..+++.+...
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTSTT
T ss_pred             cCcC-cHHHHHHHHHHHHHccc
Confidence            7666 68888888877776643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=5.1e-14  Score=107.20  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=105.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-----cccch-
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-----VASIT-   76 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~~-   76 (189)
                      +.+.....|+|.|.||||||||++++.+.+......+..|.  ..+..++..++  .+++++||||.-+     ...+. 
T Consensus       163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK--~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~  238 (346)
T COG1084         163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTK--GIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER  238 (346)
T ss_pred             CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccc--ceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence            44556788999999999999999999988876555444444  33333444333  5789999999532     22211 


Q ss_pred             H---HHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEee
Q psy17231         77 S---SYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTS  137 (189)
Q Consensus        77 ~---~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~S  137 (189)
                      +   +.-.-.++++|++|.+...  +.+.-...+.++..... .|+++|.||.|....              ......++
T Consensus       239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence            1   2222458999999998654  45666777778888774 999999999886522              12456788


Q ss_pred             ccCCCCHHHHHHHHHHHHHHh
Q psy17231        138 CKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~  158 (189)
                      +..+.+++.+.+.+.....+.
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhch
Confidence            889999988887777665443

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.60  E-value=8.9e-15  Score=119.72  Aligned_cols=141  Identities=16%  Similarity=0.076  Sum_probs=89.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCcccceeeeeEEEEEEC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISS-----------------------------SSRKSTLGLDNFNKEYKVD   55 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~   55 (189)
                      ..+.++|+++|..++|||||+.+|+...-...                             .+.+..-|.........+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            46789999999999999999999964321000                             0000011222233333333


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------  129 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------  129 (189)
                      .....+.+|||||+++|.......+..+|++++|+|++..-.- +... ...+.......|+|++.||.|+...      
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~-~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRR-HSFIATLLGIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchH-HHHHHHHhCCCceEEEEEeeccccchhHHHH
Confidence            3456789999999988865445556899999999998754211 1111 1111222123578999999885310      


Q ss_pred             -----------------CCceEEeeccCCCCHHHH
Q psy17231        130 -----------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       130 -----------------~~~~~~~Sa~~~~~i~~~  147 (189)
                                       ..+++.+||++|.|++++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence                             136899999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=4.6e-14  Score=109.78  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----ccceeeeeEEE---------------EEECC-eEEEEEEEeCCCc-
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRK----STLGLDNFNKE---------------YKVDD-RSIQMQLWDTGGM-   69 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~----~t~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~-   69 (189)
                      |.++|.++||||||+|+|.+........+.    +++|.......               ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987754332222    33332222110               01122 3467999999998 


Q ss_pred             ---cccccchHH---HhcCCcEEEEEEeCC
Q psy17231         70 ---ERVASITSS---YYKFAEAAILVFSLD   93 (189)
Q Consensus        70 ---~~~~~~~~~---~~~~~~~~i~v~d~~   93 (189)
                         +++..+...   .++.+|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444444   488999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=3.4e-14  Score=117.46  Aligned_cols=120  Identities=13%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh-CCCCCC-----------------CCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY-DTFISS-----------------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG   67 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~-~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   67 (189)
                      .+..+|+|+|.+++|||||+++|+. ......                 .+.+...+..+......+....+.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3467999999999999999999853 211100                 0001112334444444455556889999999


Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      |+.+|.......+..+|++++|+|+++.- ......++.....  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence            99888876677888999999999998741 1223344443333  3799999999999753

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.59  E-value=3.5e-14  Score=116.03  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=91.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCC------C------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT------F------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~------~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .+++.++|+++|..++|||||+++|....      .      .+....+...+.........+......+.++|+||+++
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            35778999999999999999999998521      1      11111122233343333333333445789999999999


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------  129 (189)
                      |.......+..+|++++|+|+.+... .+...++..+...  ++| +|++.||.|+...                     
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            87766667778999999999886432 2223344333333  678 7789999885210                     


Q ss_pred             --CCceEEeeccCCCCH
Q psy17231        130 --ISSTYKTSCKTGEGV  144 (189)
Q Consensus       130 --~~~~~~~Sa~~~~~i  144 (189)
                        ..+++.+|+.+|.++
T Consensus       234 ~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        234 GDDIPIISGSALLALEA  250 (478)
T ss_pred             cCcceEEEEEccccccc
Confidence              126888999988543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.59  E-value=2.4e-14  Score=116.36  Aligned_cols=141  Identities=16%  Similarity=0.174  Sum_probs=94.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCC--C-------------------------CCCCCCcccceeeeeEEEEEECC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT--F-------------------------ISSSSRKSTLGLDNFNKEYKVDD   56 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~--~-------------------------~~~~~~~~t~~~~~~~~~~~~~~   56 (189)
                      .+.+.++|+++|..++|||||+.+|+...  .                         .+....+...|.........+..
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~   82 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence            36788999999999999999999996411  1                         01111111123333344444555


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCc-EEEEeeccccccc
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~  129 (189)
                      ....+.++|+||+.+|.......+..+|++++|+|++...   .|   .+....+..+...  ++| +|++.||.|....
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccc
Confidence            5678999999999999877777788999999999988642   11   1222333233333  566 6799999993210


Q ss_pred             --------------------------CCceEEeeccCCCCHHH
Q psy17231        130 --------------------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       130 --------------------------~~~~~~~Sa~~~~~i~~  146 (189)
                                                ..+++.+|+.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                                      13689999999999964

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.59  E-value=2.6e-14  Score=118.04  Aligned_cols=120  Identities=14%  Similarity=0.119  Sum_probs=81.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC-CCCC-C----------------CCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD-TFIS-S----------------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG   68 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~-~~~~-~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   68 (189)
                      +..+|+|+|.+++|||||+++|... .... .                .+.....+..+......+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            4569999999999999999999631 1100 0                00011112233333333444457899999999


Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      +.+|.......++.+|++++|+|+++.-. .....++.....  .++|+++++||+|+.+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL--RDTPIFTFINKLDRDGR  146 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh--cCCCEEEEEECCccccc
Confidence            99988877778899999999999987432 233344444333  37999999999997653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.58  E-value=6.5e-14  Score=112.53  Aligned_cols=136  Identities=14%  Similarity=0.057  Sum_probs=90.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ...+.++|+++|..++|||||+++|.....            .+....+...|.+.......+......+.++||||+.+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            457889999999999999999999986211            01111111223344444444444456789999999988


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~---------------------  129 (189)
                      |.......+..+|++++|+|++.... .+....+..+...  ++|.+ ++.||.|+...                     
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            77655666789999999999976422 2223333333333  68876 68999885310                     


Q ss_pred             --CCceEEeeccCCC
Q psy17231        130 --ISSTYKTSCKTGE  142 (189)
Q Consensus       130 --~~~~~~~Sa~~~~  142 (189)
                        ..+++.+||++|.
T Consensus       165 ~~~~~iv~iSa~~g~  179 (396)
T PRK00049        165 GDDTPIIRGSALKAL  179 (396)
T ss_pred             ccCCcEEEeeccccc
Confidence              1377999999875

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.6e-13  Score=110.49  Aligned_cols=143  Identities=18%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEE--EEEEC-CeEEEEEEEeCCCccccccchHHHhcC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNK--EYKVD-DRSIQMQLWDTGGMERVASITSSYYKF   82 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~   82 (189)
                      .++.-++++|....|||||+-++-.........  .  |++..-.  .+..+ ...-.+.++||||++.|..++..-..-
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea--G--GITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v   78 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA--G--GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV   78 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccC--C--ceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence            456678999999999999999997766543321  1  2344333  23332 122478999999999999988888888


Q ss_pred             CcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC---------------------CceEEeec
Q psy17231         83 AEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI---------------------SSTYKTSC  138 (189)
Q Consensus        83 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~---------------------~~~~~~Sa  138 (189)
                      +|++++|+++++   +++.+.+.    .++..  +.|++|+.||.|+....                     ..++.+||
T Consensus        79 tDIaILVVa~dDGv~pQTiEAI~----hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA  152 (509)
T COG0532          79 TDIAILVVAADDGVMPQTIEAIN----HAKAA--GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSA  152 (509)
T ss_pred             ccEEEEEEEccCCcchhHHHHHH----HHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence            999999999997   45555443    23333  89999999998876442                     17799999


Q ss_pred             cCCCCHHHHHHHHHHHHHHh
Q psy17231        139 KTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ++|+|++++++.+.-.....
T Consensus       153 ~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         153 KTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            99999999999877655443

>PLN03127 Elongation factor Tu; Provisional

Probab=99.56  E-value=1.4e-13  Score=111.81  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=94.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhC------C------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYD------T------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~------~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ...++++|+++|..++|||||+++|.+.      .      ..+..+.+...|.+.......+.....++.++||||+.+
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3577899999999999999999999621      1      011111111223344444444544456789999999988


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------  129 (189)
                      |..........+|++++|+|+++... .+....+..+...  ++| +|++.||.|+...                     
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            76655555667999999999875421 1222223233333  688 5788999885310                     


Q ss_pred             --CCceEEeecc---CCCC-------HHHHHHHHHHHH
Q psy17231        130 --ISSTYKTSCK---TGEG-------VEEMFADIGRQL  155 (189)
Q Consensus       130 --~~~~~~~Sa~---~~~~-------i~~~~~~i~~~i  155 (189)
                        ..+++.+|+.   +|.|       +.++++++.+.+
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence              1256777765   5555       667777766554

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.55  E-value=4e-13  Score=98.19  Aligned_cols=148  Identities=16%  Similarity=0.064  Sum_probs=89.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------c---hH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------I---TS   77 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   77 (189)
                      .+|+++|.+|+|||||+|++.+..........+............+.+  ..+.++||||..+...        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876432221111111122233333444  4789999999765421        1   11


Q ss_pred             HHhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEE
Q psy17231         78 SYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYK  135 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~  135 (189)
                      ....++|++++|.++.+. +....+-.++..+.....-.++++|+|++|....                     ...|+.
T Consensus        79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            123578999999998762 1222333333333222123789999999774321                     114444


Q ss_pred             ee-----ccCCCCHHHHHHHHHHHHHHh
Q psy17231        136 TS-----CKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       136 ~S-----a~~~~~i~~~~~~i~~~i~~~  158 (189)
                      .+     +..+.+++++++.+.+.+.+.
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            44     456778888888888777653

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.54  E-value=2.1e-13  Score=104.41  Aligned_cols=146  Identities=18%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---hHHHhcCC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----I---TSSYYKFA   83 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~   83 (189)
                      |-++|-|++|||||++.+...+......+..|+  ......+...+ .-.|.+=|.||..+-.+    +   .-..+..+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL--~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTL--VPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccc--cCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            458999999999999999988766565555554  33333344322 23588999999765332    2   24456678


Q ss_pred             cEEEEEEeCCChhh---HHHHHHHHHHHHHh---CCCCcEEEEeeccccccc---------------CCc-eEEeeccCC
Q psy17231         84 EAAILVFSLDNAAS---FHVLSQHLLEIVTY---AENAKIFLCGNNEQCHNL---------------ISS-TYKTSCKTG  141 (189)
Q Consensus        84 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~---~~~~p~ivv~nK~d~~~~---------------~~~-~~~~Sa~~~  141 (189)
                      .++++|+|++..+.   .+.......++..+   ..++|.+||+||+|....               ... .+.+||.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            99999999985432   34444444444444   368999999999883211               111 122999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q psy17231        142 EGVEEMFADIGRQLILSN  159 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~~~  159 (189)
                      .|++++...+.+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999888887764

>KOG0462|consensus

Probab=99.54  E-value=7.7e-14  Score=112.19  Aligned_cols=147  Identities=20%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCC--CCcccceeeeeEEEE-EECCeEEEEEEEeCCCcccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF-----------ISSS--SRKSTLGLDNFNKEY-KVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~-----------~~~~--~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      -++.|+..-.-|||||.-+|+...-           .+..  +++..+.+...+..+ ..+++.+.++++||||+.+|..
T Consensus        61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~  140 (650)
T KOG0462|consen   61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG  140 (650)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence            4788999999999999999963221           1111  122222222222222 2235678999999999999999


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEeec
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKTSC  138 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa  138 (189)
                      .....+..++++++|+|++..-.-+.+..++..+..   +..+|.|.||.|++...                .+++.+||
T Consensus       141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSA  217 (650)
T KOG0462|consen  141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSA  217 (650)
T ss_pred             eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEe
Confidence            999999999999999998764333334444433332   79999999998876542                37899999


Q ss_pred             cCCCCHHHHHHHHHHHHHHh
Q psy17231        139 KTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~~~  158 (189)
                      |+|.|++++++++++.+...
T Consensus       218 K~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  218 KTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             ccCccHHHHHHHHHhhCCCC
Confidence            99999999999999987544

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.54  E-value=6.1e-14  Score=118.83  Aligned_cols=139  Identities=17%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------CC---------------CcccceeeeeEEEEEECC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISS--------------SS---------------RKSTLGLDNFNKEYKVDD   56 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--------------~~---------------~~~t~~~~~~~~~~~~~~   56 (189)
                      .+.++|+++|.+++|||||+++|+...-...              ..               .+..-|.........+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            5678999999999999999999975321110              00               000012222222223333


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------  129 (189)
                      ....+.++||||+++|.......+..+|++++|+|++....- +....+..+... ...|+||+.||+|+...       
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh-CCCeEEEEEEecccccchhHHHHH
Confidence            345788999999988765555567899999999998754211 111111112222 23688999999886420       


Q ss_pred             ------------C---CceEEeeccCCCCHHH
Q psy17231        130 ------------I---SSTYKTSCKTGEGVEE  146 (189)
Q Consensus       130 ------------~---~~~~~~Sa~~~~~i~~  146 (189)
                                  .   .+++.+||++|.|+++
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                        0   2489999999999984

>KOG1191|consensus

Probab=99.52  E-value=3.5e-13  Score=107.30  Aligned_cols=151  Identities=20%  Similarity=0.209  Sum_probs=103.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITS   77 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~   77 (189)
                      ..++|+|+|+||+|||||+|.|.+.+.....+ .+.+..|.....+.+++  +++.+.||+|..+-..         ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            45899999999999999999999887644433 22222344455556665  6789999999766111         225


Q ss_pred             HHhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhC-------CCCcEEEEeecccccccC------------------
Q psy17231         78 SYYKFAEAAILVFSL--DNAASFHVLSQHLLEIVTYA-------ENAKIFLCGNNEQCHNLI------------------  130 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~-------~~~p~ivv~nK~d~~~~~------------------  130 (189)
                      ..+..+|++++|+|+  ++-++-..+...+.......       ...|+|++.||.|+...+                  
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV  423 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence            567789999999998  33333333333333332221       358999999997764331                  


Q ss_pred             -CceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        131 -SSTYKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       131 -~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                       ....++|++++++++.+...+.+.+.....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             133559999999999999998887765543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.52  E-value=5.2e-13  Score=101.53  Aligned_cols=146  Identities=22%  Similarity=0.202  Sum_probs=100.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYY   80 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~   80 (189)
                      .-.++++|.|++|||||+++|.+.+.....-.+.|.  ......+.++  ..++++.|+||..+-.+       ..-...
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl--~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTL--EPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceec--ccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeee
Confidence            458999999999999999999987765544334333  3333444444  47889999998654322       234567


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------HHH---------
Q psy17231         81 KFAEAAILVFSLDNAAS-FHVLSQHLLE----------------------------------------IVT---------  110 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~---------  110 (189)
                      +.||.+++|.|+..... .+.+.+.+..                                        +.+         
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            89999999999985543 3233222111                                        111         


Q ss_pred             -----------------hCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        111 -----------------YAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       111 -----------------~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                                       ....+|.++|.||.|+...        ...++.+||..+.|++++.+.+.+.+.-
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCe
Confidence                             0024888999999886542        1278999999999999999999887743

>KOG1145|consensus

Probab=99.52  E-value=3.9e-13  Score=108.23  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..++.-|.|+|...-|||||+-+|-....-..--..-|-.+-.+..+.+ ++  -.+.|.||||+..|..++..-.+.+|
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence            3456788899999999999999997666533221111222222333333 44  46799999999999998888888999


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCC---------------------ceEEeeccC
Q psy17231         85 AAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLIS---------------------STYKTSCKT  140 (189)
Q Consensus        85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~---------------------~~~~~Sa~~  140 (189)
                      ++++|+.++|.   ++.+.++    ....  .+.|++|..||+|.++...                     +++.+||++
T Consensus       227 IvVLVVAadDGVmpQT~EaIk----hAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQTLEAIK----HAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEEEEEccCCccHhHHHHHH----HHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            99999999874   5554443    2233  3899999999999775522                     779999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQLI  156 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~  156 (189)
                      |+|++.+-+.+.-...
T Consensus       301 g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAE  316 (683)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999999988776554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.51  E-value=3.6e-13  Score=115.16  Aligned_cols=117  Identities=9%  Similarity=0.045  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCC-----------CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFIS-----SSS-----------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~-----~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      +..+|.|+|.+++|||||+++|....-..     ...           ....+..+.....+.+.  ...+.+|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCc
Confidence            34589999999999999999996421100     000           00111122223334443  4688999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      ++.......++.+|++++|+|+++....... .++..+...  ++|+++++||+|+..
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~ivviNK~D~~~  141 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY--EVPRIAFVNKMDKTG  141 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            8887788889999999999999875443322 233333333  699999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.50  E-value=1.3e-12  Score=104.57  Aligned_cols=85  Identities=24%  Similarity=0.319  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc----ceeeeeEEE---------E------EEC-CeEEEEEEEeCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST----LGLDNFNKE---------Y------KVD-DRSIQMQLWDTGG   68 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t----~~~~~~~~~---------~------~~~-~~~~~~~i~D~~g   68 (189)
                      ++|.|+|.||||||||+|+|.+..+.....+..|    .|.......         .      ..+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998776543322233    232211000         0      011 2236789999999


Q ss_pred             cc----ccccchHHH---hcCCcEEEEEEeCC
Q psy17231         69 ME----RVASITSSY---YKFAEAAILVFSLD   93 (189)
Q Consensus        69 ~~----~~~~~~~~~---~~~~~~~i~v~d~~   93 (189)
                      ..    +...+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    333444455   88999999999996

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.50  E-value=9.8e-14  Score=118.94  Aligned_cols=121  Identities=16%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC---------------CCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD---------------TFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~---------------~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ....+|+++|..++|||||+++|...               .+.. +..+..|+........+...+..+.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            44579999999999999999999742               1110 0112223322222223335566789999999999


Q ss_pred             cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      .+|.......++.+|++++|+|+.+.-..+....| ..+..  .+.|.++++||.|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK--ENVKPVLFINKVDRLIN  153 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH--cCCCEEEEEEChhcccc
Confidence            99888778889999999999998764222111112 22222  36888999999998653

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.50  E-value=3.8e-13  Score=106.78  Aligned_cols=148  Identities=22%  Similarity=0.229  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCCC--CcccceeeeeEE--EEEE-CCeEEEEEEEeCCCcccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF-----------ISSSS--RKSTLGLDNFNK--EYKV-DDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~-----------~~~~~--~~~t~~~~~~~~--~~~~-~~~~~~~~i~D~~g~~~~   72 (189)
                      -+..|+..-.-|||||.-|+....-           .+..+  ++..+.......  .+.. +++.+.++++||||+.+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            4677889999999999999953221           11111  112222222222  3333 447799999999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEe
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKT  136 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~  136 (189)
                      .-.....+..|.++++|+|++..-.-+.+...|..+.+   +..+|-|.||.|++..-                ...+.+
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence            98888899999999999999865433455555555444   68999999998887552                266889


Q ss_pred             eccCCCCHHHHHHHHHHHHHHhh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      |||+|.||+++++.+++.+....
T Consensus       167 SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             ecccCCCHHHHHHHHHhhCCCCC
Confidence            99999999999999998885443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.49  E-value=3.2e-12  Score=98.23  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH---HHh-
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS---SYY-   80 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~-   80 (189)
                      +...++|+++|.+|+||||++|++.+.......... +.+...........  ..++.+|||||..+......   ..+ 
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            456789999999999999999999977643222211 11112222222333  35789999999775432111   111 


Q ss_pred             -----cCCcEEEEEEeCCCh--hhH-HHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         81 -----KFAEAAILVFSLDNA--ASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        81 -----~~~~~~i~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                           ...|++++|..++..  ... ..+-+.+..+....--.++||++|++|...
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence                 258899999666532  111 222233333322222367999999998653

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.48  E-value=1.2e-13  Score=93.19  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-ccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRK-STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +|++++|..|+|||+|+.++....+....  . +|.+                           +........+.++.++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~--~~~t~~---------------------------~~~~~~~~~~s~~~~~   51 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP--TVFTIG---------------------------IDVYDPTSYESFDVVL   51 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccC--ceehhh---------------------------hhhccccccCCCCEEE
Confidence            58999999999999999999777664222  2 3332                           2222234566788999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc-------CCceEEeeccCCCCHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-------~~~~~~~Sa~~~~~i~  145 (189)
                      +||+.+++++++.+  |...+.... .+.|.++++||+|+...       ...++++|+++|.|+.
T Consensus        52 ~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       52 QCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence            99999999999766  777665543 57899999999987432       1257788999999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3905|consensus

Probab=99.48  E-value=1.1e-12  Score=99.81  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=107.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC----
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA----   83 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----   83 (189)
                      .-+|+++|+.|+|||||+.+|.+.+.   ......+++.+....-...+...++.+|-..|...+..+....+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            56899999999999999999998762   22244443333222223334456789999888766655554444332    


Q ss_pred             cEEEEEEeCCChh-hHHHHHHHHHHHHHh---------------------------------------------------
Q psy17231         84 EAAILVFSLDNAA-SFHVLSQHLLEIVTY---------------------------------------------------  111 (189)
Q Consensus        84 ~~~i~v~d~~~~~-s~~~~~~~~~~~~~~---------------------------------------------------  111 (189)
                      -.+|++.|++++. -++++++|...+.++                                                   
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            3688899999994 567888888776650                                                   


Q ss_pred             -----------CCCCcEEEEeecccccc--------------------------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        112 -----------AENAKIFLCGNNEQCHN--------------------------LISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       112 -----------~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                                 ..++|++||.+|||+-.                          .....+++|+|...||+-++++|...
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                       13599999999999621                          12377999999999999999999998


Q ss_pred             HHHhh
Q psy17231        155 LILSN  159 (189)
Q Consensus       155 i~~~~  159 (189)
                      +....
T Consensus       289 ~yG~~  293 (473)
T KOG3905|consen  289 SYGFP  293 (473)
T ss_pred             hcCcc
Confidence            77654

>KOG1532|consensus

Probab=99.48  E-value=2.2e-13  Score=101.36  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             EEEEEEEeCCCccc-cc-----cchHHHhcCCc--EEEEEEeC---CChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         58 SIQMQLWDTGGMER-VA-----SITSSYYKFAE--AAILVFSL---DNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        58 ~~~~~i~D~~g~~~-~~-----~~~~~~~~~~~--~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      ...+.++|||||.+ |.     .+....+....  ++++++|.   +++.+|-.---+.-.+.-. ...|+|+++||+|.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKTDV  193 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEecccc
Confidence            35689999999865 21     12233333333  44455553   2444553222222222222 47999999999764


Q ss_pred             cccC-----------------------------------------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        127 HNLI-----------------------------------------SSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       127 ~~~~-----------------------------------------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ....                                         -..+.|||.+|.|.+++|..+-..+.+.
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            3210                                         1568899999999999999987765544

>KOG0090|consensus

Probab=99.47  E-value=5.6e-13  Score=95.67  Aligned_cols=112  Identities=19%  Similarity=0.324  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc---CC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK---FA   83 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~   83 (189)
                      ..-.|+++|+.+||||+|+-+|..+.+..+.   +++  ......+..+..  ...++|.||+++.+.-...++.   .+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~a  109 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSA  109 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCee---eee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccc
Confidence            3457999999999999999999988653332   121  333334444443  3689999999887664444444   78


Q ss_pred             cEEEEEEeCC-ChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccc
Q psy17231         84 EAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQ  125 (189)
Q Consensus        84 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d  125 (189)
                      -++|||+|.. .......+..++..+....    ..+|++++.||.|
T Consensus       110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD  156 (238)
T KOG0090|consen  110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD  156 (238)
T ss_pred             eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence            8999999964 3334455555555544433    5799999999955

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.47  E-value=9e-13  Score=107.17  Aligned_cols=151  Identities=15%  Similarity=0.134  Sum_probs=97.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCcccc--eeeeeEE----------EE-EEC-------------
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTF---ISSSSRKSTL--GLDNFNK----------EY-KVD-------------   55 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~---~~~~~~~~t~--~~~~~~~----------~~-~~~-------------   55 (189)
                      ..+.++|.++|.-..|||||+.+|.+...   ..+..+.-|+  |+.....          .+ ...             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35678999999999999999999985322   2222222221  2211100          00 000             


Q ss_pred             ---CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231         56 ---DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----  128 (189)
Q Consensus        56 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----  128 (189)
                         .....+.++|+||+++|.......+..+|++++|+|++....-.+....+. +.....-.|+|+|.||.|+..    
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKLKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCCCcEEEEEecccccCHHHH
Confidence               002368999999999887766666778999999999986311112222222 222222357899999988531    


Q ss_pred             ----------------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        129 ----------------LISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       129 ----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                      ...+++.+||++|.|++++++.|...+.
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence                            1237899999999999999999886554

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.43  E-value=3.9e-12  Score=95.98  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---I-------   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------   75 (189)
                      ...++|+++|.+|+|||||+|++.+..........++. ..........++  ..+.+|||||..+...   .       
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T-~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET-LRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce-EEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45799999999999999999999987653332222221 122222233333  5789999999765521   1       


Q ss_pred             hHHHh--cCCcEEEEEEeCCChh-hHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         76 TSSYY--KFAEAAILVFSLDNAA-SFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        76 ~~~~~--~~~~~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      ...++  ...+++++|..++... ...  .+-+++.......--.++++|.||+|...-
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            11122  2567888887666432 222  233333332221112679999999997643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490|consensus

Probab=99.43  E-value=1.1e-12  Score=104.77  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=112.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----ch
Q psy17231          2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----IT   76 (189)
Q Consensus         2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~   76 (189)
                      .+.+.+.-.++++|-|+||||||+|.+...........++|.  ..+..+  ++.+-..++++||||.-+...     +.
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTk--sL~vGH--~dykYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTK--LLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccc--hhhhhh--hhhheeeeeecCCccccCcchhhhhHHH
Confidence            355677789999999999999999999877765443223322  222222  233345789999999643221     11


Q ss_pred             ----HHHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeecccccccC------------------Cc
Q psy17231         77 ----SSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI------------------SS  132 (189)
Q Consensus        77 ----~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~  132 (189)
                          .+...-..+++++.|++...  |.++--+.++.+.....+.|+|+|.||+|..+..                  .+
T Consensus       238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~  317 (620)
T KOG1490|consen  238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK  317 (620)
T ss_pred             HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence                11112235788999998764  5566667788888887899999999998864331                  27


Q ss_pred             eEEeeccCCCCHHHHHHHHHHHHHHhhhhhhhh
Q psy17231        133 TYKTSCKTGEGVEEMFADIGRQLILSNRSRLEL  165 (189)
Q Consensus       133 ~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~~  165 (189)
                      ++++|+.+.+|+.++....+..++..+.++...
T Consensus       318 v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  318 VVQTSCVQEEGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             EEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999998888877654433

>PRK12739 elongation factor G; Reviewed

Probab=99.42  E-value=2.3e-12  Score=110.26  Aligned_cols=117  Identities=11%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC--C------CC------CCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT--F------IS------SSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~------~~------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      +..+|.|+|.+++|||||+++|....  .      ..      ..+  ....+..+....++.++  ..+++++||||+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~   84 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGHV   84 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCHH
Confidence            45689999999999999999996421  0      00      000  01112223333344444  4678999999998


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      +|.......++.+|++++|+|+.+...-.. ...+..+...  ++|+|++.||.|+.+
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~--~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY--GVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            888788888999999999999876532221 2233333333  799999999999864

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.41  E-value=4e-12  Score=111.30  Aligned_cols=128  Identities=18%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC----------------eEEEEEEEeCCCccccccchHHHhcC
Q psy17231         19 VGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD----------------RSIQMQLWDTGGMERVASITSSYYKF   82 (189)
Q Consensus        19 ~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~   82 (189)
                      ++||||+.++-+......-...-|..+-.+  .+..+.                ..-.+.+|||||++.|..+....+..
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~--~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~  549 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT--EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL  549 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceE--EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence            569999999987665333211222111111  111110                01137999999999998877777888


Q ss_pred             CcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------------------
Q psy17231         83 AEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------------------  129 (189)
Q Consensus        83 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------------------  129 (189)
                      +|++++|+|+++   +++++.+..    +...  ++|+++|+||+|+...                              
T Consensus       550 aDivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        550 ADLAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             CCEEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999986   555554432    2222  6899999999987420                              


Q ss_pred             -----------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        130 -----------------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       130 -----------------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                                             ..+++.+||++|+|++++++++...
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                                   1166889999999999999877543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=2.2e-12  Score=101.12  Aligned_cols=143  Identities=15%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCC--C-------------------------CCCCCCcccceeeeeEEEEEECC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT--F-------------------------ISSSSRKSTLGLDNFNKEYKVDD   56 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~--~-------------------------~~~~~~~~t~~~~~~~~~~~~~~   56 (189)
                      ...++++++++|+..+|||||+-+|+...  +                         .+....+..-|.++......+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            35789999999999999999999994211  1                         11112222235566666666666


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc--
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--  129 (189)
                      ..+.+.++|+||+.+|-...-.-..+||++|+|+|+.+.+   +|  ....+.+..+.+...-..+||+.||+|....  
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence            6778999999999888776666677899999999998764   22  1122333333333334667888999874321  


Q ss_pred             ----------------------CCceEEeeccCCCCHHH
Q psy17231        130 ----------------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       130 ----------------------~~~~~~~Sa~~~~~i~~  146 (189)
                                            ..+|+.+|+..|.|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence                                  12789999999999875

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.39  E-value=1.7e-11  Score=99.67  Aligned_cols=150  Identities=17%  Similarity=0.182  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC--CeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      .+.-.|+|+|..++|||||+.+|.+.+-     +.++.+.++....+..+  +...++++|-..|...+..+....+...
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e~-----~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIED-----PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccCC-----CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            4457999999999999999999976432     23444555544433322  2346789999988666665554444322


Q ss_pred             ----cEEEEEEeCCChhhH-HHHHHHHHHHHH--------------------------------h---------------
Q psy17231         84 ----EAAILVFSLDNAASF-HVLSQHLLEIVT--------------------------------Y---------------  111 (189)
Q Consensus        84 ----~~~i~v~d~~~~~s~-~~~~~~~~~~~~--------------------------------~---------------  111 (189)
                          -.+++|.|.+.|..+ +++.+|+..++.                                .               
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence                478899999999755 556666654443                                0               


Q ss_pred             ----------------CCCCcEEEEeecccccc--------------------------cCCceEEeeccCCCCHHHHHH
Q psy17231        112 ----------------AENAKIFLCGNNEQCHN--------------------------LISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus       112 ----------------~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~  149 (189)
                                      ..++|++||++|+|...                          ....+|+||++...|++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                            01489999999988432                          123679999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      +|...+.....
T Consensus       258 yi~h~l~~~~f  268 (472)
T PF05783_consen  258 YILHRLYGFPF  268 (472)
T ss_pred             HHHHHhccCCC
Confidence            99998877654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK00007 elongation factor G; Reviewed

Probab=99.39  E-value=7e-12  Score=107.31  Aligned_cols=117  Identities=9%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh--CCCCC------------CCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY--DTFIS------------SSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~--~~~~~------------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      +..+|.|+|.+++|||||+++|..  +....            ..+  ....+..+.....+.+.  ...++++||||+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~   86 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHV   86 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcH
Confidence            356999999999999999999963  11100            000  01112222223344444  4688999999998


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      +|.......+..+|++++|+|+...-.-+. ...+..+...  ++|.|++.||.|+.+
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~--~~p~iv~vNK~D~~~  141 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY--KVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            887767778889999999999875432222 2223333333  789999999999763

>PRK09866 hypothetical protein; Provisional

Probab=99.36  E-value=3.2e-11  Score=99.93  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCcccc--c---cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231         59 IQMQLWDTGGMERV--A---SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----  129 (189)
                      ..+.+.||||...-  .   ......+..+|++++|+|.+...+... ......+.......|+++|.||.|....    
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            35688999997542  1   123457889999999999987433222 1223333333223699999999886420    


Q ss_pred             ------------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231        130 ------------------ISSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus       130 ------------------~~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                                        ...+|.+||+.|.|++++++.+.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                              125899999999999999999877

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.33  E-value=1.1e-10  Score=86.33  Aligned_cols=149  Identities=19%  Similarity=0.096  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------h---H
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------T---S   77 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~---~   77 (189)
                      ++|+++|.+|+||||++|.+++........................++  ..+.++||||..+....        .   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999877644432222222233344445566  46799999996433221        1   1


Q ss_pred             HHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------CCceE
Q psy17231         78 SYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------ISSTY  134 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------~~~~~  134 (189)
                      ....+.|++++|+.+..-. .-...-.++..+....--..+|||+|.+|....                      ...|+
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            1234689999999988321 112223344444332223578899998654322                      12445


Q ss_pred             Eeecc------CCCCHHHHHHHHHHHHHHhh
Q psy17231        135 KTSCK------TGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       135 ~~Sa~------~~~~i~~~~~~i~~~i~~~~  159 (189)
                      ..+.+      ....+.++++.+-+.+.+..
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            44444      23456666666666665554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.32  E-value=6.9e-12  Score=109.25  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=79.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeE--EEEEE--------------CC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFN--KEYKV--------------DD   56 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~--~~~~~--------------~~   56 (189)
                      ..+..+|+|+|..++|||||+.+|....-.            +....+...+..+..  ....+              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345679999999999999999999743311            000000001112221  11222              12


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ..+.++++||||+.+|.......++.+|++++|+|+...-...... .+..+...  ++|+|++.||.|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHHC--CCCEEEEEECCccc
Confidence            3577899999999999888888889999999999988653322222 23333333  79999999999876

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.32  E-value=1.7e-11  Score=91.98  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             EEEEEeCCCccccccchHHHh--------cCCcEEEEEEeCC---ChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         60 QMQLWDTGGMERVASITSSYY--------KFAEAAILVFSLD---NAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        60 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      .+.++|||||.++-..+....        ...-++++++|..   ++..|-.. -.-...+.+.  +.|.+.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeeccCcc
Confidence            689999999988765544433        4556888888865   45544332 1222222333  79999999999875


Q ss_pred             c--------------------------------------cCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        128 N--------------------------------------LIS-STYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       128 ~--------------------------------------~~~-~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      .                                      ... .++.+|+.+++++++++..+.+++
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            5                                      012 689999999999999999887765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13768 GTPase; Provisional

Probab=99.31  E-value=1.9e-11  Score=92.66  Aligned_cols=96  Identities=18%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             EEEEEeCCCccccc---cchHHHhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         60 QMQLWDTGGMERVA---SITSSYYK---F--AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        60 ~~~i~D~~g~~~~~---~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      .+.+||+||+.+..   ..+..+.+   .  ++++++|+|+.........  ..|+........++|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            58999999986632   23322222   2  7899999999654322221  2333222222247999999999774210


Q ss_pred             -------------------------------------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 -------------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 -------------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                                                 ..+++++|++++.|++++++++.+.+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence                                                       12679999999999999999988766

>cd00066 G-alpha G protein alpha subunit

Probab=99.30  E-value=1.6e-10  Score=90.32  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      .+.+.+||++|+...+..|..++.+++++++|+|+++-          ..+.+....+..+....  .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46789999999999999999999999999999999863          44555555555555443  6899999999988


Q ss_pred             cc
Q psy17231        126 CH  127 (189)
Q Consensus       126 ~~  127 (189)
                      ..
T Consensus       240 ~f  241 (317)
T cd00066         240 LF  241 (317)
T ss_pred             HH
Confidence            43

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.29  E-value=5e-12  Score=83.38  Aligned_cols=124  Identities=19%  Similarity=0.211  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHHhcCCc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSYYKFAE   84 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~   84 (189)
                      -||.++|..|+|||||.+++.+.....    ..|-.       +.+..+    -.+||||..-    +.+-......+++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dad   66 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDAD   66 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhh----cccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccc
Confidence            379999999999999999998765421    11111       222211    3579999432    1122344567899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++++|-.++++++.     +-..+... -..|+|-|.+|.|+...              ..++|++|+.++.|++++++.
T Consensus        67 vi~~v~~and~~s~-----f~p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          67 VIIYVHAANDPESR-----FPPGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeeeeecccCcccc-----CCcccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999999998652     11111122 24679999999998732              238999999999999999988


Q ss_pred             HHH
Q psy17231        151 IGR  153 (189)
Q Consensus       151 i~~  153 (189)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            753

>KOG0705|consensus

Probab=99.27  E-value=1.3e-11  Score=99.52  Aligned_cols=154  Identities=26%  Similarity=0.478  Sum_probs=120.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF   82 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   82 (189)
                      +.+.+.+|+.|+|..++|||+|+.+++.+.|.....+.   + ..+.+.+-.++++..+.+.|-+|..+     ..+...
T Consensus        25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e---~-~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~w   95 (749)
T KOG0705|consen   25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE---G-GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQW   95 (749)
T ss_pred             ecccchhheeeeecccCCceeeeeeeccceeccccCCc---C-ccceeeEEeeccceEeeeecccCCch-----hhhhhh
Confidence            44678899999999999999999999999886554222   2 44455555667777888888877432     467778


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeec--------------------ccccccCCceEEeeccC
Q psy17231         83 AEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNN--------------------EQCHNLISSTYKTSCKT  140 (189)
Q Consensus        83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK--------------------~d~~~~~~~~~~~Sa~~  140 (189)
                      +|++||||.+.+..+|+.+......+..+.  ..+|+++++++                    ++.++  +.||++++.+
T Consensus        96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr--csy~et~aty  173 (749)
T KOG0705|consen   96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR--CSYYETCATY  173 (749)
T ss_pred             ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc--cceeecchhh
Confidence            999999999999999999988887776554  67999999998                    33333  4899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhhhhhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRSRLELQT  167 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~~~~~~~  167 (189)
                      |-+++.+|+.++.++...++.+.....
T Consensus       174 Glnv~rvf~~~~~k~i~~~~~qq~~~~  200 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQLRKYQQLPAS  200 (749)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcccc
Confidence            999999999999988877655444333

>PTZ00416 elongation factor 2; Provisional

Probab=99.27  E-value=2.5e-11  Score=105.69  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeE--EEEEEC--------CeEEEEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFN--KEYKVD--------DRSIQMQL   63 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~--~~~~~~--------~~~~~~~i   63 (189)
                      .+..+|+++|..++|||||+++|....-.            +..+.+..-+..+..  ....+.        +....+++
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34459999999999999999999753210            000000001112211  122222        22567899


Q ss_pred             EeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         64 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      +||||+.+|.......++.+|++++|+|+.+.-.-.. ...+..+...  ++|+|++.||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc--CCCEEEEEEChhhh
Confidence            9999999988877888999999999999886432222 2233333333  68999999999876

>PRK12740 elongation factor G; Reviewed

Probab=99.27  E-value=1.7e-11  Score=104.89  Aligned_cols=109  Identities=14%  Similarity=0.162  Sum_probs=71.9

Q ss_pred             EcCCCCCHHHHHHHHHhCCCC--------CCC------C--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH
Q psy17231         14 CGEYGVGKSSLFRRYAYDTFI--------SSS------S--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS   77 (189)
Q Consensus        14 ~G~~g~GKTtli~~l~~~~~~--------~~~------~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   77 (189)
                      +|.+++|||||+++|....-.        ...      .  ....+........+.+.  .+.+++|||||+.+|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            699999999999999543210        000      0  01111112222233333  46899999999988877778


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ..+..+|++++|+|++..........| ..+...  ++|+++|+||+|..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~~--~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEKY--GVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHHc--CCCEEEEEECCCCC
Confidence            889999999999999876554433333 333333  79999999997743

>TIGR00101 ureG urease accessory protein UreG

Probab=99.26  E-value=1.1e-10  Score=85.34  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE--EEEeecccccc--------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQCHN--------  128 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~d~~~--------  128 (189)
                      ....++++.|..-.....+.   -++.++.|+|+.+.+....  .+.       +.+..  ++++||+|+.+        
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence            35567788774322222221   2578999999987665321  111       13344  89999988753        


Q ss_pred             ---------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        129 ---------LISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                               ...+++++||++|.|++++|+++.+.+
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence                     124899999999999999999998664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.25  E-value=8.1e-11  Score=101.40  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCC--C----------CCcccceeeeeEE----EEEECCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISS--S----------SRKSTLGLDNFNK----EYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--~----------~~~~t~~~~~~~~----~~~~~~~~~~~~i~D~~g~~   70 (189)
                      +.-+|+++|..++|||||+.+|....-...  .          +.+..-+..+...    .+.+.+..+.++++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            445799999999999999999974321100  0          0000001111111    22234446789999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      +|.......++.+|++++|+|+...-.-....-|. .....  +.|.|++.||.|....
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~--~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE--RVKPVLFINKVDRLIK  154 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc--CCCeEEEEECchhhcc
Confidence            99887788899999999999987643222222222 22333  5788999999998654

>smart00275 G_alpha G protein alpha subunit

Probab=99.24  E-value=4.4e-10  Score=88.65  Aligned_cols=69  Identities=16%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeecccc
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQC  126 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~  126 (189)
                      ..+.+||.+|+...+..|..++.+++++++|+|+++-          ..+++....+..+....  .+.|+++++||.|.
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5679999999999999999999999999999999862          34555555555655543  68999999999774


Q ss_pred             c
Q psy17231        127 H  127 (189)
Q Consensus       127 ~  127 (189)
                      .
T Consensus       264 ~  264 (342)
T smart00275      264 F  264 (342)
T ss_pred             H
Confidence            3

Subunit of G proteins that contains the guanine nucleotide binding site

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.24  E-value=1.7e-10  Score=91.81  Aligned_cols=151  Identities=12%  Similarity=0.153  Sum_probs=106.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      ++.-+|.|+....-|||||+..|+...            ..+..+-+..-|+++..+...+.+..+++++.||||+.+|.
T Consensus         3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG   82 (603)
T COG1217           3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG   82 (603)
T ss_pred             cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence            345689999999999999999996322            22233333334556666655555566899999999999999


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------C
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------I  130 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~  130 (189)
                      ......+.-.|++++++|+....- -+.+.-+......  +.+-|||.||.|....                       -
T Consensus        83 GEVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~--gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          83 GEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL--GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             chhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc--CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            999999999999999999976321 1112222223333  7888999999665433                       2


Q ss_pred             CceEEeeccCC----------CCHHHHHHHHHHHHHHhh
Q psy17231        131 SSTYKTSCKTG----------EGVEEMFADIGRQLILSN  159 (189)
Q Consensus       131 ~~~~~~Sa~~~----------~~i~~~~~~i~~~i~~~~  159 (189)
                      .++++.|++.|          .++.-+|+.|++.+....
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            37888888765          357778998888876554

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.18  E-value=8.7e-11  Score=88.65  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             cccccchHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceE
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTY  134 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~  134 (189)
                      +++..+.+.+++++|.+++|||++++. +++.+.+|+..+..  .++|+++|+||+|+..              ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~  101 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL  101 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence            467777788999999999999999887 89999999987654  4899999999999742              123789


Q ss_pred             EeeccCCCCHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~  153 (189)
                      ++||++|.|++++|+.+.+
T Consensus       102 ~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       102 MTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEecCCchhHHHHHhhhcC
Confidence            9999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1e-10  Score=99.00  Aligned_cols=121  Identities=12%  Similarity=0.089  Sum_probs=84.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC--------------CCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT--------------FISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~   70 (189)
                      .+.-+|.|+|+..+|||||..+++...              +.+....+..-|+++.......... .+.++++||||+.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            345689999999999999999995211              1111111111244444443333333 5899999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      +|.......++.+|++++|+|+...-..+.-.-|.+. ..+  ++|.+++.||.|....
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~~--~vp~i~fiNKmDR~~a  143 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DKY--GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hhc--CCCeEEEEECcccccc
Confidence            9999999999999999999999765433333344433 333  7999999999886543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.17  E-value=5.9e-10  Score=85.60  Aligned_cols=117  Identities=14%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---ch
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS--------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---IT   76 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~   76 (189)
                      .++|+++|.+|+|||||+|.|.+.......        ....+..+......+.-++....+.++||||..+...   .|
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999876654432        1122233333334455567788999999999532111   00


Q ss_pred             ------------------------HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         77 ------------------------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        77 ------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                                              ...-...|+++++.+.+... +..+.  +..+.+.....++|-|..|+|..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~l  155 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEeccccc
Confidence                                    00111348899998876532 22221  22333344468999999998853

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.17  E-value=6.2e-10  Score=87.81  Aligned_cols=149  Identities=13%  Similarity=0.128  Sum_probs=74.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHH-----H
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSS-----Y   79 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~   79 (189)
                      ..+++|.|+|.+|+|||||||+|-+-...+.. .+...+..+.....|..... -.+.+||.||...-..-...     -
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            34789999999999999999999653322111 11111111222333332221 14799999996432221122     2


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc--c------------------------------
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC--H------------------------------  127 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~--~------------------------------  127 (189)
                      +...|.+|++.+    +.|.....++....+.. ++|+.+|-+|.|.  .                              
T Consensus       112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~~-gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  112 FYRYDFFIIISS----ERFTENDVQLAKEIQRM-GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GGG-SEEEEEES----SS--HHHHHHHHHHHHT-T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             ccccCEEEEEeC----CCCchhhHHHHHHHHHc-CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            445687777665    23444444444333333 8999999999552  0                              


Q ss_pred             cc-CCceEEeeccCC--CCHHHHHHHHHHHHHHhhh
Q psy17231        128 NL-ISSTYKTSCKTG--EGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       128 ~~-~~~~~~~Sa~~~--~~i~~~~~~i~~~i~~~~~  160 (189)
                      +. ..++|.+|+.+-  .+...+.+.+.+.+...+.
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            00 127899998755  4677777777776554433

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.16  E-value=8.1e-10  Score=86.39  Aligned_cols=89  Identities=15%  Similarity=0.186  Sum_probs=60.8

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------  129 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------  129 (189)
                      .+.+.++||+|.....   ......+|.+++|.+....+....+.   ..+.+    ..-++|.||+|+...        
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccchhHHHHHHH
Confidence            3678999999975322   22566799999997644444333322   22222    234899999995321        


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                      ..+++.+||+++.|++++++.+.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                            147899999999999999999988644

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.15  E-value=9.2e-10  Score=85.56  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------  129 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------  129 (189)
                      .+.+.|+||+|....   .......+|.++++-+....   +++......+.    .+|.++|.||+|+...        
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHH
Confidence            467899999985421   12356667777777443322   34333333332    5888999999886311        


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                      ..+++.+||+++.|++++++++.+.+.
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                            025899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.2e-09  Score=86.52  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh-CCCCC-------CCCC----------cccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY-DTFIS-------SSSR----------KSTLGLDNFNKEYKVDDRSIQMQLWDTGG   68 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~-~~~~~-------~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   68 (189)
                      ++-...|+-.|.+|||||..+|+- +....       ....          +..-|+...+....++.....+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            345678999999999999999941 11100       0000          01124455555556666678899999999


Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN  123 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (189)
                      +++|..-....+..+|.++.|+|+...-- .+..+.....+.  .++||+=..||
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl--R~iPI~TFiNK  142 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL--RDIPIFTFINK  142 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh--cCCceEEEeec
Confidence            99999888888899999999999876421 122333333332  48999999999

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.10  E-value=7.6e-10  Score=78.66  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=43.7

Q ss_pred             EEEEEeCCCccc----cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231         60 QMQLWDTGGMER----VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNE  124 (189)
Q Consensus        60 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (189)
                      .+.|+|+||...    .......++..+|++++|.+.+...+-.....+.+.....  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            378999999743    2245677789999999999998865544555544444444  45588999983

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0461|consensus

Probab=99.08  E-value=1.8e-09  Score=83.20  Aligned_cols=153  Identities=18%  Similarity=0.150  Sum_probs=87.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCC-------CCCCCCcccceeeeeEEEEE-----ECCeEEEEEEEeCCC
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTF-------ISSSSRKSTLGLDNFNKEYK-----VDDRSIQMQLWDTGG   68 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~-------~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~i~D~~g   68 (189)
                      |+++. ..+++.++|...+|||||.+++..-.-       +....+.-|++.-+...+..     ..++..++.++|+||
T Consensus         1 m~~~p-~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG   79 (522)
T KOG0461|consen    1 MTSPP-SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG   79 (522)
T ss_pred             CCCCC-ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence            44433 349999999999999999999964321       12222222222222222111     134567889999999


Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL------------------  129 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------  129 (189)
                      +.......-.-....|..++|+|+...-.-+... -.+-++.    -...+||.||.|....                  
T Consensus        80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL  155 (522)
T KOG0461|consen   80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL  155 (522)
T ss_pred             cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence            8654332223333458889999987532111111 1122222    2455667777442211                  


Q ss_pred             -------CCceEEeeccCC----CCHHHHHHHHHHHHHHh
Q psy17231        130 -------ISSTYKTSCKTG----EGVEEMFADIGRQLILS  158 (189)
Q Consensus       130 -------~~~~~~~Sa~~~----~~i~~~~~~i~~~i~~~  158 (189)
                             ..|++++||..|    +.|.++.+.+-.++.+.
T Consensus       156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence                   238999999999    66666666665555444

>cd01882 BMS1 Bms1

Probab=99.07  E-value=2.9e-09  Score=79.48  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=66.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..++..|+++|++|+|||||++.+.........  ....| .   .++.. ....++.++|+||..  . ........+|
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~--~~~~g-~---i~i~~-~~~~~i~~vDtPg~~--~-~~l~~ak~aD  105 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI--SDIKG-P---ITVVT-GKKRRLTFIECPNDI--N-AMIDIAKVAD  105 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcc--ccccc-c---EEEEe-cCCceEEEEeCCchH--H-HHHHHHHhcC
Confidence            355678999999999999999999864221111  11111 1   11111 134578999999853  2 2234467899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeecccc
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQC  126 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~  126 (189)
                      ++++|+|++...... ....+..+...  +.|. ++|.||.|+
T Consensus       106 vVllviDa~~~~~~~-~~~i~~~l~~~--g~p~vi~VvnK~D~  145 (225)
T cd01882         106 LVLLLIDASFGFEME-TFEFLNILQVH--GFPRVMGVLTHLDL  145 (225)
T ss_pred             EEEEEEecCcCCCHH-HHHHHHHHHHc--CCCeEEEEEecccc
Confidence            999999987543221 12233333333  5674 559999886

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144|consensus

Probab=99.06  E-value=1.6e-09  Score=90.47  Aligned_cols=149  Identities=16%  Similarity=0.182  Sum_probs=99.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEE------EEE--C----CeEEEEEEEeCCCcccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKE------YKV--D----DRSIQMQLWDTGGMERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~------~~~--~----~~~~~~~i~D~~g~~~~   72 (189)
                      +..-++|+|...+|||-|+-.+-+..+......  ..-+|-++....      ...  .    -..-.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            345678999999999999999976544322111  111121221110      000  0    11124789999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------
Q psy17231         73 ASITSSYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------  129 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------  129 (189)
                      ..++.....-|+.+|+|+|+.   .+++.+.+.-    ++..  +.|+||..||.|....                    
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHHHH----HHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            999999999999999999986   3556655532    2332  7999999999442111                    


Q ss_pred             ---------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        130 ---------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       130 ---------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                                                       ....+.+||.+|+||..++-+|++.-......
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence                                             01557899999999999998888766555443

>KOG0410|consensus

Probab=99.05  E-value=1.7e-09  Score=82.66  Aligned_cols=149  Identities=14%  Similarity=0.086  Sum_probs=100.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-ch-------HHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-IT-------SSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~-------~~~   79 (189)
                      -.-|.++|..|+|||||+++|......+...-+.|+..+  ......... -.+.+.||-|.-.-.. ..       -..
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT--~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT--LHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch--hhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            346889999999999999999966665565556665333  332333222 2567889999643211 11       122


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCc----EEEEeecccccccCC-----ceEEeeccCCCCHHHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAK----IFLCGNNEQCHNLIS-----STYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p----~ivv~nK~d~~~~~~-----~~~~~Sa~~~~~i~~~~~  149 (189)
                      ...+|.++.|.|++.|..-++...-+..+.... +..|    +|=|-||.|......     ..+.+||++|.|++++.+
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el~~  334 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEELLK  334 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHHHH
Confidence            347899999999999987777777776666653 2333    445778877654422     257799999999999998


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      .+-.++....
T Consensus       335 a~~~kv~~~t  344 (410)
T KOG0410|consen  335 AEETKVASET  344 (410)
T ss_pred             HHHHHhhhhh
Confidence            8777665543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.05  E-value=2.6e-09  Score=78.76  Aligned_cols=138  Identities=12%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCC-CC-----CCCcccce---e-eeeEEEEEEC--------------------C
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SS-----SSRKSTLG---L-DNFNKEYKVD--------------------D   56 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~-----~~~~~t~~---~-~~~~~~~~~~--------------------~   56 (189)
                      ....|.++|+.|+|||||++++...... ..     ........   . ..........                    .
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            4678889999999999999999643110 00     00000000   0 0000001110                    0


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------  129 (189)
                      ....+.++++.|.-...   ..+....+..+.|+|+.+.+..  +... ...    ...|.++++||.|+...       
T Consensus       101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~----~~~a~iiv~NK~Dl~~~~~~~~~~  170 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM----FKEADLIVINKADLAEAVGFDVEK  170 (207)
T ss_pred             CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH----HhhCCEEEEEHHHccccchhhHHH
Confidence            12356677777721111   0111234555677777654321  1110 111    14788999999886421       


Q ss_pred             ----------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        130 ----------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       130 ----------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                                ..+++++||++|.|++++++++.+.
T Consensus       171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                      1479999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.05  E-value=1.8e-09  Score=83.38  Aligned_cols=140  Identities=19%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC----------CC-------------------CCcccceeeeeEEEEEEC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFIS----------SS-------------------SRKSTLGLDNFNKEYKVD   55 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~----------~~-------------------~~~~t~~~~~~~~~~~~~   55 (189)
                      ....++++-+|...=||||||-||+...-..          ..                   ..+..-|+++......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            3567899999999999999999995322100          00                   000111444444434444


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC-----
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI-----  130 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~-----  130 (189)
                      -.+.+|.+-||||+++|....-.-...||++|+++|+-  ....+-.+-+..+.....-..+++..||.|+.+..     
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence            45678999999999998765555556789999999973  22222222233333333347778888998865432     


Q ss_pred             -----------------CceEEeeccCCCCHHH
Q psy17231        131 -----------------SSTYKTSCKTGEGVEE  146 (189)
Q Consensus       131 -----------------~~~~~~Sa~~~~~i~~  146 (189)
                                       ..++.+||..|.|+-.
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence                             2778999999999864

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.01  E-value=7e-09  Score=86.60  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=71.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------ch---
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------IT---   76 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~---   76 (189)
                      .++|+++|.+|+||||++|++.+......... ..|.  .........++  ..+.++||||..+...       +.   
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT--r~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT--SVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce--EEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            47899999999999999999998764333221 2222  22122223333  5789999999765321       11   


Q ss_pred             HHHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeecccccc
Q psy17231         77 SSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHN  128 (189)
Q Consensus        77 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~  128 (189)
                      ..++.  .+|++++|..++......+-..++..+....   --..+|||+|+.|..+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            11222  5799999988864332212223444444333   2377899999988664

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0468|consensus

Probab=99.01  E-value=2.4e-09  Score=88.47  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------CCcccceeeeeEE--EEE---ECCeEEEEEE
Q psy17231          2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-------------SRKSTLGLDNFNK--EYK---VDDRSIQMQL   63 (189)
Q Consensus         2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-------------~~~~t~~~~~~~~--~~~---~~~~~~~~~i   63 (189)
                      ++......++.++|.-+.|||+|...|.....+...             ..+..-|..+...  ++-   .+++.+-+++
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            344556678999999999999999999644332211             1111112222221  111   2456788999


Q ss_pred             EeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         64 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      .||||+.+|....-+.++.+|++++|+|+...-.+..- ..+....+.  +.|+.+|+||.|
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~--~~~i~vviNKiD  260 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN--RLPIVVVINKVD  260 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc--cCcEEEEEehhH
Confidence            99999999999889999999999999999887665333 333333333  799999999955

>KOG1707|consensus

Probab=99.01  E-value=1.2e-08  Score=83.22  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+-+...++|+.++|||.|++.+.+..+...+  ..+....+....+...+....+.+-|.+-. ....+.... ..+|+
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~--~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNN--TGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhcccccccc--ccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            34578899999999999999999998776644  233322333333444455556677776543 222222222 78899


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +.++||.+++.+|+-+...+..-... ...|+++|++|+|+.+..                .+-...|++.... .++|.
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            99999999999998887666554444 589999999998875442                1335567775333 78899


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      .|..+....+
T Consensus       577 kL~~~A~~Ph  586 (625)
T KOG1707|consen  577 KLATMAQYPH  586 (625)
T ss_pred             HHHHhhhCCC
Confidence            9998887766

>PTZ00258 GTP-binding protein; Provisional

Probab=98.98  E-value=6.3e-09  Score=82.94  Aligned_cols=86  Identities=21%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~   70 (189)
                      ...++|.|+|.||||||||+|+|.+........+..|+  +.......+.+.               ..++.++|+||..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi--~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTI--DPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcc--cceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            34679999999999999999999877654444334443  333333333221               2358999999965


Q ss_pred             cccc----c---hHHHhcCCcEEEEEEeCC
Q psy17231         71 RVAS----I---TSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        71 ~~~~----~---~~~~~~~~~~~i~v~d~~   93 (189)
                      .-.+    +   ....++.+|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            3221    1   233467899999999973

>KOG0458|consensus

Probab=98.96  E-value=9.8e-09  Score=83.78  Aligned_cols=142  Identities=16%  Similarity=0.177  Sum_probs=97.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC---------------------------CCCCCCCcccceeeeeEEEEEECCeE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT---------------------------FISSSSRKSTLGLDNFNKEYKVDDRS   58 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   58 (189)
                      ..++.++++|...+|||||..+++..-                           ..+++..+..-|+.....+..++-..
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            457899999999999999999994211                           01222223334566666666666667


Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL----  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----  129 (189)
                      ..+.+.|.||+.+|....-.-...+|++++|+|++..+   +|+.  -.+.+..+.+...-.-+||+.||.|.-.-    
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R  334 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR  334 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence            78999999998888776666667889999999987432   3321  12444445554445677889999773211    


Q ss_pred             ---------------------CCceEEeeccCCCCHHHH
Q psy17231        130 ---------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       130 ---------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                                           ...|+.||+.+|+|+-..
T Consensus       335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                                 127899999999998643

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.95  E-value=6.9e-09  Score=81.89  Aligned_cols=83  Identities=20%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   73 (189)
                      ++|.++|.||||||||+|++.+........+..|+  +.....+.+.+.               ...+.+.|+||...-.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi--~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccc--cceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            68999999999999999999987754433334443  333323333221               1358999999975422


Q ss_pred             c----c---hHHHhcCCcEEEEEEeCC
Q psy17231         74 S----I---TSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        74 ~----~---~~~~~~~~~~~i~v~d~~   93 (189)
                      +    +   ....++.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            1    1   123467899999999974

>cd01900 YchF YchF subfamily

Probab=98.93  E-value=8e-09  Score=78.88  Aligned_cols=81  Identities=21%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcccccc-
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVAS-   74 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~-   74 (189)
                      |.|+|.||||||||+|++.+........+..|+  +.......+.+.               ...+.++|+||...-.+ 
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi--~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccch--hceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            579999999999999999988765444344443  333333333221               23589999999653221 


Q ss_pred             ---ch---HHHhcCCcEEEEEEeCC
Q psy17231         75 ---IT---SSYYKFAEAAILVFSLD   93 (189)
Q Consensus        75 ---~~---~~~~~~~~~~i~v~d~~   93 (189)
                         +.   -..++.+|++++|+|+.
T Consensus        79 ~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence               21   23356899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.5e-08  Score=80.36  Aligned_cols=141  Identities=18%  Similarity=0.106  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      -|.-.|.---|||||++.+.+...... +.....|++.....+.++..+..+.++|.||++++-...-.-....|.+++|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l-~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRL-PEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccc-hhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            466778888999999999986543211 1122223344444444444445889999999999887777777789999999


Q ss_pred             EeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHH
Q psy17231         90 FSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        90 ~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++.++.   ++-+-+     .+.........++|.||+|....                 ..++|.+|+++|.||+++.+
T Consensus        81 V~~deGl~~qtgEhL-----~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          81 VAADEGLMAQTGEHL-----LILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EeCccCcchhhHHHH-----HHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999643   333222     22333334556999999886531                 12779999999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++.....
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9988874

>KOG3887|consensus

Probab=98.90  E-value=8e-09  Score=76.08  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE--EEECCeEEEEEEEeCCCcccccc---chHHHhcCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE--YKVDDRSIQMQLWDTGGMERVAS---ITSSYYKFA   83 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~   83 (189)
                      .+|+++|...+||||+......+..+.     .|+-.+...+.  -++.+.-+.+.+||+||+-.+-.   -....++++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-----eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~  102 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPN-----ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV  102 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCC-----ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence            459999999999999888777665432     23222222221  12233446789999999865432   457789999


Q ss_pred             cEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--------------------------ccCCceEE
Q psy17231         84 EAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--------------------------NLISSTYK  135 (189)
Q Consensus        84 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--------------------------~~~~~~~~  135 (189)
                      .+.++|.|+.+.  +.+.++.....+.....+++-+=|...|.|-.                          +.. --|.
T Consensus       103 gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~-vsf~  181 (347)
T KOG3887|consen  103 GALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQ-VSFY  181 (347)
T ss_pred             CeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccce-EEEE
Confidence            999999998764  55555555555555555888888999994411                          111 2255


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      ..+....+|-|.|..+++.+..+-.
T Consensus       182 LTSIyDHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  182 LTSIYDHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             EeeecchHHHHHHHHHHHHHhhhch
Confidence            5667789999999998888776644

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.88  E-value=7.8e-09  Score=73.88  Aligned_cols=65  Identities=20%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +.-|+|+|++..+-.  -.+-...+     ..-=++|.||.|+...                 ..+++++|+++|.|+++
T Consensus       119 ~~~v~VidvteGe~~--P~K~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         119 HLRVVVIDVTEGEDI--PRKGGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             ceEEEEEECCCCCCC--cccCCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence            467778887755410  00000000     1244789999775433                 23999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +++|+....
T Consensus       192 ~~~~i~~~~  200 (202)
T COG0378         192 WLRFIEPQA  200 (202)
T ss_pred             HHHHHHhhc
Confidence            999986543

>smart00053 DYNc Dynamin, GTPase

Probab=98.87  E-value=4.9e-08  Score=73.19  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      .....++++|+.|+||||+++.+.+..+
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~   51 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDF   51 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence            3456899999999999999999997653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.86  E-value=4.2e-08  Score=78.04  Aligned_cols=144  Identities=10%  Similarity=0.107  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCc---ccceeee---eEEEE-EECCeEEEEEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS----------------SRK---STLGLDN---FNKEY-KVDDRSIQMQLW   64 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~----------------~~~---~t~~~~~---~~~~~-~~~~~~~~~~i~   64 (189)
                      .+.|.++|+.++|||||+|+|.+..+.+..                ...   .|+.-.+   ....+ ..++.+..+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            678999999999999999999876221111                111   1111111   01111 123445788999


Q ss_pred             eCCCcccccc-------c----------------------hHHHhc-CCcEEEEEE-eCC----ChhhH-HHHHHHHHHH
Q psy17231         65 DTGGMERVAS-------I----------------------TSSYYK-FAEAAILVF-SLD----NAASF-HVLSQHLLEI  108 (189)
Q Consensus        65 D~~g~~~~~~-------~----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~-~~~~~~~~~~  108 (189)
                      ||+|...-..       -                      ....+. .++..++|. |.+    .++.+ +.-..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999642111       0                      133444 778888887 653    12223 3336777777


Q ss_pred             HHhCCCCcEEEEeeccc-ccc------------cCCceEEeecc--CCCCHHHHHHHHHH
Q psy17231        109 VTYAENAKIFLCGNNEQ-CHN------------LISSTYKTSCK--TGEGVEEMFADIGR  153 (189)
Q Consensus       109 ~~~~~~~p~ivv~nK~d-~~~------------~~~~~~~~Sa~--~~~~i~~~~~~i~~  153 (189)
                      ...  ++|++++.||+| ...            ...+++.+|+.  +...|..+++.++.
T Consensus       177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            776  899999999988 211            11254555553  44466665555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG3886|consensus

Probab=98.84  E-value=4.6e-09  Score=76.73  Aligned_cols=117  Identities=22%  Similarity=0.315  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----chHHHhc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT-FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----ITSSYYK   81 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~   81 (189)
                      .-||+++|.+|+|||++-..+..+- ..+......|+  +..-....+-+. ..+++||.+|++.+..     .....++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~ti--dveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATI--DVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcc--eeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence            4689999999999999876665322 11122223333  333333333332 4689999999985433     4456788


Q ss_pred             CCcEEEEEEeCCChhhH---HHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         82 FAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ..++.++|||+...+--   +..++-+..+.++.|...+++...|.|+.
T Consensus        81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv  129 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV  129 (295)
T ss_pred             eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence            89999999999887543   33455556666666889999999997754

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.1e-08  Score=70.81  Aligned_cols=55  Identities=27%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      -+++++|.+|+|||||+|++.+.......   ...+.+.....+..++   .+.+|||||.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVS---ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeC---CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            38999999999999999999987654322   2223344444455544   4689999996

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2486|consensus

Probab=98.79  E-value=1.2e-08  Score=76.51  Aligned_cols=137  Identities=19%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   76 (189)
                      .+..++++|-+|+|||+|++.+...+...... .++.|.......+....   .+.+.|.||.-          ++..+.
T Consensus       135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~-k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTS-KSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCceeeeecCCcccHHHHHhhhhhhhhhhhhc-CCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence            46899999999999999999998766433221 22444344444444443   56789999921          223333


Q ss_pred             HHHhcCCc---EEEEEEeCCCh-h-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------
Q psy17231         77 SSYYKFAE---AAILVFSLDNA-A-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------  129 (189)
Q Consensus        77 ~~~~~~~~---~~i~v~d~~~~-~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------  129 (189)
                      ..++...+   .+++..|++-+ . .-.....|+   .+.  +.|+-+|+||||....                      
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~---ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL---GEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH---hhc--CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            44444333   35555565432 1 111112333   233  8999999999885321                      


Q ss_pred             ----CCceEEeeccCCCCHHHHHHHHH
Q psy17231        130 ----ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus       130 ----~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                          ..+|+.+|+.++.|+++++-.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehh
Confidence                12778899999999998876544

>KOG0082|consensus

Probab=98.77  E-value=3.6e-07  Score=71.57  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhh----------HHHHHHHHHHHHHhC--CCCcEEEEeecccc
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS----------FHVLSQHLLEIVTYA--ENAKIFLCGNNEQC  126 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~  126 (189)
                      ..+.++|.+||..-+.-|...+.++++++||.++++-+.          ..+.......+....  .+.++|+..||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            578999999998878888899999999999999875322          122223333333332  68999999999664


Q ss_pred             cccC---------------------------------------C-ceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        127 HNLI---------------------------------------S-STYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       127 ~~~~---------------------------------------~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      ....                                       . =++.++|.+-.+|+.+|..+...+....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            3210                                       0 1245678888888888888888777654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.75  E-value=1.2e-08  Score=76.32  Aligned_cols=86  Identities=17%  Similarity=0.292  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.+++|.|--..   .-....-+|.+++|....-.+..+.++.=+-+       +.=|+|.||+|....         
T Consensus       122 ~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~~~~~~l~~  191 (266)
T PF03308_consen  122 FDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGADRTVRDLRS  191 (266)
T ss_dssp             -SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHHHHHHHHHH
Confidence            45677777662111   13556778888888886544433333322211       455788999774311         


Q ss_pred             ------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        130 ------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       130 ------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                                  ..+++.|||.++.|++++++.+.+.
T Consensus       192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence                        2388999999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01858 NGP_1 NGP-1

Probab=98.74  E-value=3.9e-08  Score=69.28  Aligned_cols=57  Identities=19%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ..++++++|.+|+|||||+|+|.+.........   .|.+.....+....   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~---~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI---PGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC---CCeeEeEEEEEcCC---CEEEEECcCC
Confidence            467899999999999999999987654333221   22222222223222   3689999983

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1954|consensus

Probab=98.73  E-value=1e-07  Score=74.32  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCe-----------------------------
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDR-----------------------------   57 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~-----------------------------   57 (189)
                      +.=|+++|+-.+||||||+.|....|+... -++||.  ++.....+-+..                             
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            456899999999999999999998886432 123332  332222221100                             


Q ss_pred             ----------EEEEEEEeCCCcc-----------ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc
Q psy17231         58 ----------SIQMQLWDTGGME-----------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK  116 (189)
Q Consensus        58 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p  116 (189)
                                --.+.++||||.-           +|....+.+...+|.++++||...-+--.+....+..++.+  .-.
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Edk  213 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDK  213 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cce
Confidence                      0147899999942           34456678889999999999988765555566666666665  345


Q ss_pred             EEEEeecccc
Q psy17231        117 IFLCGNNEQC  126 (189)
Q Consensus       117 ~ivv~nK~d~  126 (189)
                      +=||.||+|.
T Consensus       214 iRVVLNKADq  223 (532)
T KOG1954|consen  214 IRVVLNKADQ  223 (532)
T ss_pred             eEEEeccccc
Confidence            5678999873

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.73  E-value=4.2e-08  Score=70.15  Aligned_cols=56  Identities=27%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      .++++++|.||+|||||+|++.+.......   +..|.+.....+..+.   .+.++||||.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~---~~pg~T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVG---ATPGVTKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceec---CCCCeEcceEEEEeCC---CEEEEECcCC
Confidence            479999999999999999999986653332   2223333333333332   5789999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.72  E-value=2.5e-07  Score=70.36  Aligned_cols=88  Identities=15%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.|++|.|--...   -....-+|.+++|.-..-.+..+.++.   -+.    .+-=|+|.||+|..+.         
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~  213 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS  213 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence            456777777632221   345566787777766544444444433   222    2455789999874432         


Q ss_pred             --------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 --------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 --------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                    .++++.+||.+|+|++++++.+.+...
T Consensus       214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence                          238899999999999999999877543

>cd01855 YqeH YqeH

Probab=98.70  E-value=5.4e-08  Score=70.70  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------  129 (189)
                      +...+..+++.++++++|+|++++..     .|...+.....++|+++|+||.|+...                      
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            46677888999999999999987642     122222222347899999999886311                      


Q ss_pred             CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      ...++.+||++|.|++++++++.+.+.
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            015789999999999999999988663

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.70  E-value=3.1e-07  Score=71.62  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=47.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----C---CcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-----S---RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-----~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      -..++|+++|++|+|||||+|.|++.......     .   ..+++.+......+.-++....+.++||||.-+
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD   94 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD   94 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence            34689999999999999999999876432221     1   234444555555666677788999999999654

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=4.8e-08  Score=74.00  Aligned_cols=118  Identities=14%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCC----------C--CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT----------F--ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~----------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ...++++|..+|.-.-|||||..++..--          |  .+..+.+...|+++......+.-....+...|+||+.+
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence            35788999999999999999999884211          1  12223333446666666666654455678999999999


Q ss_pred             cccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEE-EEeeccccc
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCH  127 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~  127 (189)
                      |-...-.-..+.|+.|+|+.++|.   ++-+.+    .-.++.  +.|.| ++.||+|+-
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv--Gvp~ivvflnK~Dmv  141 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV--GVPYIVVFLNKVDMV  141 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc--CCcEEEEEEeccccc
Confidence            876555666678999999999874   333222    112222  56555 566998854

>KOG2655|consensus

Probab=98.65  E-value=3.4e-07  Score=71.74  Aligned_cols=116  Identities=14%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCC-------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---ch-
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISS-------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---IT-   76 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~-   76 (189)
                      .+.++++|++|.|||||+|.|+...+...       .....+..+......+.-++....+.++||||.-+...   .| 
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999986644322       12222444455555555567788999999999643211   11 


Q ss_pred             ---------------------HHHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         77 ---------------------SSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        77 ---------------------~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                                           +..+.  ..|++++....+.. ++..++  +..+......+.+|-|.-|+|.
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~  170 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADT  170 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeecccc
Confidence                                 11112  45788877775543 122221  1112222235777777888664

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.5e-07  Score=72.11  Aligned_cols=153  Identities=15%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeee-----eEE-------EEEE----------CCeEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDN-----FNK-------EYKV----------DDRSIQ   60 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~-----~~~-------~~~~----------~~~~~~   60 (189)
                      .+.++|.++|...-|||||..+|.+--   +..+..+.-|+..-+     +..       .+..          ......
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            468999999999999999999996432   111111111110000     000       0000          012356


Q ss_pred             EEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231         61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------  129 (189)
Q Consensus        61 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------  129 (189)
                      +.|.|.||++-.....-.-..-.|++++|+.++.+.---+....+.. .+...-..+|++-||.|+-..           
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigik~iiIvQNKIDlV~~E~AlE~y~qIk  166 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGIKNIIIVQNKIDLVSRERALENYEQIK  166 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-HhhhccceEEEEecccceecHHHHHHHHHHHH
Confidence            89999999986544332333345899999998754221122222222 222235789999999774211           


Q ss_pred             ---------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        130 ---------ISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       130 ---------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                               ..+++.+||..+.||+.+++++.+.+....
T Consensus       167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence                     238999999999999999999988876543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.63  E-value=1.6e-07  Score=71.92  Aligned_cols=41  Identities=17%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             CCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        114 NAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       114 ~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      ..+-++|.||.|+...                 ..+++.+||++|.|++++++|+..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3677999999887541                 1378999999999999999998763

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.62  E-value=2.7e-07  Score=70.94  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=40.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      .+.++++++|.+|||||||+|+|.+........   ..|.+.....+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC---CCCeecceEEEEeCC---CEEEEECCCc
Confidence            356899999999999999999999766433322   222233333444432   4689999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.61  E-value=1e-07  Score=69.23  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=37.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISS-----SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ..+++++|.+|+|||||+|+|.+......     .......|.+.....+....   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            45899999999999999999987543211     00011123333344444433   4689999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=98.61  E-value=1.6e-07  Score=67.15  Aligned_cols=57  Identities=23%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ..++++++|.+|+|||||+|++.+..+....   ...+.+.....+..+   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~---~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG---NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec---CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999987653221   111223333333333   35789999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=2e-07  Score=65.51  Aligned_cols=57  Identities=28%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ...+++++|.+|+|||||+|++.+.....   ..++.+.+.....+..++   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~---~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS---TSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc---cCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            45788999999999999999998654322   133444333222222222   5799999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.60  E-value=2.3e-07  Score=71.71  Aligned_cols=59  Identities=24%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      ...++++++|.+|||||||+|+|.+.......   +..|.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~---~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG---NRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC---CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            35689999999999999999999987653322   2223333333344433   47899999974

>KOG1547|consensus

Probab=98.60  E-value=1e-06  Score=65.09  Aligned_cols=64  Identities=16%  Similarity=0.298  Sum_probs=45.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFIS-------SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .++|+++|.+|.|||||+|.+.......       ..+...|+.+...+..+.-++.+.++.++||||.-+
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence            5899999999999999999996544322       112334444444445555567778899999999643

>KOG1486|consensus

Probab=98.56  E-value=2.8e-06  Score=63.26  Aligned_cols=97  Identities=22%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSY   79 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~   79 (189)
                      -.-+++++|-|.+|||||+..+..-.-.... +..| ..+.....+++++  ..+++.|.||..+-.+       ..-+.
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~-yeFT-TLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAAS-YEFT-TLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhc-eeee-EEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEE
Confidence            3569999999999999999999754432222 1222 1244444555555  5789999999754322       22345


Q ss_pred             hcCCcEEEEEEeCCChhhHHH-HHHHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHV-LSQHLLE  107 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~  107 (189)
                      .+.+|.++.|.|++..+.-.+ +.+.+..
T Consensus       137 ArtaDlilMvLDatk~e~qr~~le~ELe~  165 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSEDQREILEKELEA  165 (364)
T ss_pred             eecccEEEEEecCCcchhHHHHHHHHHHH
Confidence            677899999999987765443 3444443

>TIGR00092 GTP-binding protein YchF

Probab=98.55  E-value=5e-07  Score=71.51  Aligned_cols=83  Identities=16%  Similarity=0.028  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERV   72 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   72 (189)
                      +++.|+|.|++|||||++.+..... .....+..|+  +.....+.+.+.               ...+.+.|.||...-
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi--~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTI--EPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCC--CCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            7899999999999999999998876 4444334444  222233333221               246789999997542


Q ss_pred             c----c---chHHHhcCCcEEEEEEeCC
Q psy17231         73 A----S---ITSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        73 ~----~---~~~~~~~~~~~~i~v~d~~   93 (189)
                      .    .   ..-..++.+|++++|+++.
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence            1    1   3345677899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.55  E-value=2.4e-07  Score=71.64  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             HHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCCC
Q psy17231         77 SSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTGE  142 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~~  142 (189)
                      +..+.++|.+++|+|++++. ++..+.+|+..+...  ++|+++|+||+|+..             ...+++.+||+++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            44578899999999999987 888888898877654  799999999998732             12378999999999


Q ss_pred             CHHHHHHHHHH
Q psy17231        143 GVEEMFADIGR  153 (189)
Q Consensus       143 ~i~~~~~~i~~  153 (189)
                      |+++++..+..
T Consensus       151 gi~~L~~~L~~  161 (287)
T cd01854         151 GLDELREYLKG  161 (287)
T ss_pred             cHHHHHhhhcc
Confidence            99999888764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.54  E-value=3.3e-07  Score=64.39  Aligned_cols=81  Identities=10%  Similarity=0.017  Sum_probs=57.5

Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccC
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKT  140 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~  140 (189)
                      .+.....+++|++++|+|++++..... ..+...+..  .++|+++|+||+|+...             ..+++.+||++
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~   80 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE   80 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence            345667778999999999987643222 122222222  36999999999996311             12679999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQLIL  157 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~  157 (189)
                      +.|++++++.+.+.+..
T Consensus        81 ~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          81 RLGTKILRRTIKELAKI   97 (156)
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999877643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=7e-07  Score=70.00  Aligned_cols=86  Identities=17%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE--------------CCeEEEEEEEeCCCccc--
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV--------------DDRSIQMQLWDTGGMER--   71 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~i~D~~g~~~--   71 (189)
                      .+++.|+|.||||||||+|++..........+..|+.-+.....+..              .-....+.++|.+|...  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            46899999999999999999998886656655666532222221111              11245689999998643  


Q ss_pred             --cccchHH---HhcCCcEEEEEEeCC
Q psy17231         72 --VASITSS---YYKFAEAAILVFSLD   93 (189)
Q Consensus        72 --~~~~~~~---~~~~~~~~i~v~d~~   93 (189)
                        -..+-+.   -++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              2334444   467899999999975

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.51  E-value=1.4e-07  Score=66.28  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc--ce--eeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST--LG--LDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t--~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      -.++++|++|||||||+|.|..............  .|  .+.....+...+.   -.++||||..++.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            5788999999999999999987643221110111  01  1122223444332   3789999987654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.50  E-value=3.3e-07  Score=71.92  Aligned_cols=59  Identities=27%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      ....++.++|-||||||||||+|.+......   .+..|.+.....+....   .+.++||||..
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~---s~~PG~Tk~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT---SNRPGTTKGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceee---CCCCceecceEEEEcCC---CeEEecCCCcC
Confidence            3458899999999999999999998776322   22224455554555544   37899999964

>PRK12289 GTPase RsgA; Reviewed

Probab=98.49  E-value=6.9e-07  Score=70.75  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=61.2

Q ss_pred             chHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccC
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKT  140 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~  140 (189)
                      +....+.++|.+++|+|+.++. ....+..|+..+..  .++|+++|+||+|+..             ...+++.+||++
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~t  159 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVET  159 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCC
Confidence            3445678999999999998875 55567888876644  3799999999999632             123689999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy17231        141 GEGVEEMFADIGRQ  154 (189)
Q Consensus       141 ~~~i~~~~~~i~~~  154 (189)
                      +.|++++++.+...
T Consensus       160 g~GI~eL~~~L~~k  173 (352)
T PRK12289        160 GIGLEALLEQLRNK  173 (352)
T ss_pred             CCCHHHHhhhhccc
Confidence            99999999988653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.48  E-value=1.8e-05  Score=55.13  Aligned_cols=140  Identities=14%  Similarity=0.124  Sum_probs=77.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCC-Cccc-------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG-GMER-------------   71 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~-------------   71 (189)
                      ...+||.+.|+|||||||++.++...--...    -+++ -+.+..+.-++....|.+.|+. |...             
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g----~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG   77 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG----YKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG   77 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC----ceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence            4578999999999999999999974321111    1111 2333444456667778888876 3211             


Q ss_pred             -ccc-----------chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccc-------ccccCC
Q psy17231         72 -VAS-----------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQ-------CHNLIS  131 (189)
Q Consensus        72 -~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d-------~~~~~~  131 (189)
                       |.-           .....++.+|  ++++|--.+--+ ..+++...+.... .+.|+|.+.-+..       .+....
T Consensus        78 kY~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~  154 (179)
T COG1618          78 KYGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG  154 (179)
T ss_pred             eEEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC
Confidence             100           1122334445  444564444222 1233333333333 5799888888752       333322


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      -++.   .+.+|=+.++..+...+.
T Consensus       155 v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         155 VYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             EEEE---EccchhhHHHHHHHHHhc
Confidence            2332   566666688888777664

>PRK00098 GTPase RsgA; Reviewed

Probab=98.48  E-value=4.3e-07  Score=70.60  Aligned_cols=74  Identities=19%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             HHhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCC
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGE  142 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~  142 (189)
                      ....++|.+++|+|++++..+.. +..|+..+...  ++|+++|+||+|+..              ...+++.+||+++.
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34688999999999988865444 57887776543  799999999999741              12378999999999


Q ss_pred             CHHHHHHHHHH
Q psy17231        143 GVEEMFADIGR  153 (189)
Q Consensus       143 ~i~~~~~~i~~  153 (189)
                      |++++++.+..
T Consensus       154 gi~~L~~~l~g  164 (298)
T PRK00098        154 GLDELKPLLAG  164 (298)
T ss_pred             cHHHHHhhccC
Confidence            99999988743

>PRK12288 GTPase RsgA; Reviewed

Probab=98.47  E-value=3.7e-07  Score=72.21  Aligned_cols=61  Identities=26%  Similarity=0.342  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc--ce--eeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKST--LG--LDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t--~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      -++++|.+|||||||+|+|..............  .|  .+.....+.+.+.   ..++||||..++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            378999999999999999986643222111110  01  1222222333321   2599999987764

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.47  E-value=6.4e-07  Score=62.93  Aligned_cols=58  Identities=26%  Similarity=0.269  Sum_probs=36.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      ....+++++|.+|+|||||+|.+.+...........+   +........+   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~---t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGT---TTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCc---ccceEEEEec---CCEEEEECCCC
Confidence            3467899999999999999999997653221111111   1112222232   25789999984

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1491|consensus

Probab=98.46  E-value=1.2e-06  Score=67.76  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE---------------CCeEEEEEEEeCCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV---------------DDRSIQMQLWDTGGM   69 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~~i~D~~g~   69 (189)
                      ...++++.|+|.|+||||||+|.|.........-+..|+  +.....+..               ......+.++|++|.
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TI--dPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTI--DPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCccee--ccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            346789999999999999999999988877776666665  332222222               122467899999986


Q ss_pred             ccc----ccchHHH---hcCCcEEEEEEeCC
Q psy17231         70 ERV----ASITSSY---YKFAEAAILVFSLD   93 (189)
Q Consensus        70 ~~~----~~~~~~~---~~~~~~~i~v~d~~   93 (189)
                      ..-    ..+-+.+   ++.+|+++-|+++.
T Consensus        95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            432    2344443   56789999888853

>PRK12288 GTPase RsgA; Reviewed

Probab=98.41  E-value=9.8e-07  Score=69.83  Aligned_cols=72  Identities=18%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCC
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~  143 (189)
                      ..++|.+++|++++...++..+..|+..+..  .++|.++|+||+|+...                ..+++++||+++.|
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            4568999999999888899999999876544  37999999999997431                23789999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        144 VEEMFADIGR  153 (189)
Q Consensus       144 i~~~~~~i~~  153 (189)
                      ++++++.+..
T Consensus       196 ideL~~~L~~  205 (347)
T PRK12288        196 LEELEAALTG  205 (347)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.41  E-value=6.8e-07  Score=67.57  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcc----cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKS----TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      ..++++|++|||||||+|+|.............    ....+.....+...+    -.++||||...+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            467899999999999999998654322211111    000122222233322    2699999986543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.40  E-value=5.1e-06  Score=61.99  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=51.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------c
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------I   75 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~   75 (189)
                      ..+-.-|.|+|++++|||+|+|+|.+.  .+...... ..|.|+-........ +....+.++||+|......      .
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence            345566779999999999999999988  55433321 222232222221111 1246789999999754322      1


Q ss_pred             hHHHhc--CCcEEEEEEeCCC
Q psy17231         76 TSSYYK--FAEAAILVFSLDN   94 (189)
Q Consensus        76 ~~~~~~--~~~~~i~v~d~~~   94 (189)
                      .-..+.  -++++++..+.+.
T Consensus        83 ~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcc
Confidence            112222  2677776666543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0465|consensus

Probab=98.39  E-value=5.4e-07  Score=74.25  Aligned_cols=112  Identities=15%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-----CCCCCC---------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT-----FISSSS---------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~-----~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      -+|-++..--+||||+.+++....     ......         ....-|......-....+..+.++++||||+.+|.-
T Consensus        40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~  119 (721)
T KOG0465|consen   40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF  119 (721)
T ss_pred             cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence            467788888999999999985211     110000         011113344443233334468899999999999999


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN  123 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (189)
                      .....++..|++|+|.+....-.-+....|. ++.++  ++|.|...||
T Consensus       120 EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNK  165 (721)
T KOG0465|consen  120 EVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINK  165 (721)
T ss_pred             EehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEeh
Confidence            9999999999999999876542222333444 44555  7999999999

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.38  E-value=3.2e-06  Score=66.46  Aligned_cols=142  Identities=20%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc----------cee--eeeEEEEEECC-----------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST----------LGL--DNFNKEYKVDD-----------------   56 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t----------~~~--~~~~~~~~~~~-----------------   56 (189)
                      ..++.+...|....|||||.-.|..++..+..-...+          .|.  +.....+-+++                 
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            4568888999999999999999976665443211110          010  11111111111                 


Q ss_pred             ----eEEEEEEEeCCCcccccc--chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-
Q psy17231         57 ----RSIQMQLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-  129 (189)
Q Consensus        57 ----~~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-  129 (189)
                          .+--+.+.|+.|++.|..  +...+-+..|..++++.+++.-+  .+.+.+.-+... -..|+||+.||+|+... 
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a-~~lPviVvvTK~D~~~dd  271 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA-MELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh-hcCCEEEEEEecccCcHH
Confidence                113478999999998864  45556667898899988887543  333333333322 27999999999773211 


Q ss_pred             -----------------------------------------CCceEEeeccCCCCHHHHHHH
Q psy17231        130 -----------------------------------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus       130 -----------------------------------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                                                               ..|+|.+|+.+|+|++-+.+-
T Consensus       272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~  333 (527)
T COG5258         272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF  333 (527)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence                                                     228899999999999765443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.38  E-value=8e-07  Score=70.39  Aligned_cols=60  Identities=27%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc--e--eeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL--G--LDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~--~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      .++|+|++|||||||+|+|...............  |  .+.....+...+.   ..++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence            4799999999999999999865432221111100  0  1222233333322   269999997653

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.37  E-value=1.6e-06  Score=78.59  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCC--Ccc--cceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHH
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSS--RKS--TLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSS   78 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   78 (189)
                      .+|+|++|+||||+++.. +..++-...  ...  .++-+.. ..+.+.+   +-.++||+|..-        ....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            689999999999999987 333432210  011  1111111 1222333   346999999321        1123433


Q ss_pred             Hh---------cCCcEEEEEEeCCCh-----hhH----HHHHHHHHHHHHhC-CCCcEEEEeeccccccc
Q psy17231         79 YY---------KFAEAAILVFSLDNA-----ASF----HVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        79 ~~---------~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~  129 (189)
                      ++         +-.+++|+++|+++-     +..    ..++..+.++.+.. -..||-|++||||+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            32         246999999997642     222    23445555555544 68999999999997643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.34  E-value=1.1e-06  Score=70.14  Aligned_cols=81  Identities=15%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I  130 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~  130 (189)
                      .++|..+...+...++++++|+|+.+...     .|...+.+...+.|+++|+||+|+...                  .
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g  124 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG  124 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence            34677777788889999999999976542     344555544447899999999886321                  1


Q ss_pred             ---CceEEeeccCCCCHHHHHHHHHHH
Q psy17231        131 ---SSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       131 ---~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                         ..++.+||++|.|++++++.+.+.
T Consensus       125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       125 LKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence               148999999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0464|consensus

Probab=98.31  E-value=1.1e-07  Score=75.21  Aligned_cols=117  Identities=13%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--------CCCCCCC------CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY--------DTFISSS------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~--------~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      -+|.++..-.+||||-..|+..        +.+...+      ..+..-|+.....-+.++++..+++++||||+.+|.-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            4788999999999999999852        1111111      0011125566676777788889999999999999999


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      .....++..|+++.|||.+..-.-+.+..|.+.-. +  ++|-++..||.|+..
T Consensus       118 everclrvldgavav~dasagve~qtltvwrqadk-~--~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK-F--KIPAHCFINKMDKLA  168 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehhccc-c--CCchhhhhhhhhhhh
Confidence            99999999999999999986544445566654422 2  689999999977543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.28  E-value=1.9e-06  Score=66.06  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSS-------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      ..+++|.+|||||||+|+|.........       ...+|   +.....+.+.+..   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHT---Tt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHT---TTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCc---cceEEEEEcCCCC---EEEeCCCCCccC
Confidence            6789999999999999999753221111       11122   3333344553212   589999987654

>KOG0467|consensus

Probab=98.27  E-value=5e-06  Score=70.21  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      ..-+++++....-|||||+-.|....            |.+..+-+.+-|++.....+..--+.+.++++|.||+.+|.+
T Consensus         8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s   87 (887)
T KOG0467|consen    8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS   87 (887)
T ss_pred             ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence            34578899999999999999995332            233322234445555555555544568899999999999999


Q ss_pred             chHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         75 ITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ......+-+|++++++|+...   ++..-+    ++.+.  ++...|+|.||.|
T Consensus        88 evssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~--~~~~~~lvinkid  135 (887)
T KOG0467|consen   88 EVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWI--EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHH--ccCceEEEEehhh
Confidence            999999999999999998643   333322    23333  3688899999977

>KOG0099|consensus

Probab=98.25  E-value=3.9e-05  Score=57.64  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      ++.|+.+|.+|+.+-..-|-..+.+..++++|...+.          ...+.+.-.....++...  ..+.+|+..||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            4568999999999989999999999999999988753          123333344444555443  5699999999955


Q ss_pred             cccc----------------------------------------------------------CCceEEeeccCCCCHHHH
Q psy17231        126 CHNL----------------------------------------------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       126 ~~~~----------------------------------------------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +...                                                          .+=++.++|.+-+||..+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            2100                                                          012256899999999999


Q ss_pred             HHHHHHHHHHhhhhhhh
Q psy17231        148 FADIGRQLILSNRSRLE  164 (189)
Q Consensus       148 ~~~i~~~i~~~~~~~~~  164 (189)
                      |......+...+-++.+
T Consensus       361 FnDcrdiIqr~hlrqye  377 (379)
T KOG0099|consen  361 FNDCRDIIQRMHLRQYE  377 (379)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99988888776655443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.19  E-value=4.9e-06  Score=66.41  Aligned_cols=60  Identities=27%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISS--SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      .++.++|.+|||||||+|+|........  .......+.+.....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            4799999999999999999987432110  00011122233233333322   247999999754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.17  E-value=4.9e-06  Score=64.40  Aligned_cols=62  Identities=21%  Similarity=0.275  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcc----cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKS----TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      ..++++|++|+|||||+|.|.+...........    ....+.....+...+.   ..++|+||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            578999999999999999998654322211110    0011222223333321   2589999987653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0448|consensus

Probab=98.15  E-value=4.8e-05  Score=63.87  Aligned_cols=118  Identities=19%  Similarity=0.296  Sum_probs=69.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc------------------------------------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL------------------------------------------   43 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~------------------------------------------   43 (189)
                      ...+||+|.|..+.||||++|++...+..+......|.                                          
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            45789999999999999999999776655443322220                                          


Q ss_pred             eeeeeEEEEEECCe----EEEEEEEeCCCcc---ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc
Q psy17231         44 GLDNFNKEYKVDDR----SIQMQLWDTGGME---RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK  116 (189)
Q Consensus        44 ~~~~~~~~~~~~~~----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p  116 (189)
                      +-..-...+..++.    .-.+.+.|.||..   +...-...+..++|++|+|..+.+..+..+.. ++....+.  .+-
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~~--Kpn  263 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSEE--KPN  263 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhcc--CCc
Confidence            00000001111110    1135778888854   23334467788999999999988876654443 44444443  344


Q ss_pred             EEEEeecccc
Q psy17231        117 IFLCGNNEQC  126 (189)
Q Consensus       117 ~ivv~nK~d~  126 (189)
                      ++++-||.|+
T Consensus       264 iFIlnnkwDa  273 (749)
T KOG0448|consen  264 IFILNNKWDA  273 (749)
T ss_pred             EEEEechhhh
Confidence            4555566454

>PRK13796 GTPase YqeH; Provisional

Probab=98.14  E-value=5.8e-06  Score=66.05  Aligned_cols=60  Identities=27%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS--SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      ..++.++|.+|||||||+|+|.........  ...+..|.+.....+.+++.   ..++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            347899999999999999999854311100  00111222333333444332   3799999974

>KOG1487|consensus

Probab=98.11  E-value=3.1e-05  Score=58.04  Aligned_cols=145  Identities=17%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYY   80 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~   80 (189)
                      .-++-++|=|.+||||++..|.+-..+... ++.|. .........+.  ..++++.|.||..+-..       ..-+..
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vas-yeftt-l~~vpG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviava  134 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAA-YEFTT-LTTVPGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVA  134 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCcccc-cccee-EEEecceEecc--ccceeeecCcchhcccccCCCCccEEEEEe
Confidence            348889999999999999999865433222 22221 11112222233  35789999999754321       223456


Q ss_pred             cCCcEEEEEEeCCChhhHHHHH-----------------------------------------HHHHHHHHhC-------
Q psy17231         81 KFAEAAILVFSLDNAASFHVLS-----------------------------------------QHLLEIVTYA-------  112 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~-----------------------------------------~~~~~~~~~~-------  112 (189)
                      +.|+.+++|.|+-.+-+-..+.                                         ..+.+-+.+.       
T Consensus       135 rtcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~  214 (358)
T KOG1487|consen  135 RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF  214 (358)
T ss_pred             ecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeec
Confidence            6788999999976554322221                                         0000000000       


Q ss_pred             ---------------CCCcEEEEeecccccc--------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        113 ---------------ENAKIFLCGNNEQCHN--------LISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       113 ---------------~~~p~ivv~nK~d~~~--------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                     -.+|.+.+.||.|...        .....+.+||-++.|++++++.+-..+.
T Consensus       215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  215 DATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             CcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcch
Confidence                           1377888888865332        2346788999999999999998876543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.10  E-value=8.2e-06  Score=63.47  Aligned_cols=25  Identities=40%  Similarity=0.558  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ..++++|++|+|||||+|+|.+...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            4688999999999999999986543

>KOG1143|consensus

Probab=98.09  E-value=1.9e-05  Score=62.12  Aligned_cols=139  Identities=23%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---------------------CCcccceeeeeEEEEEECCe--------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSS---------------------SRKSTLGLDNFNKEYKVDDR--------   57 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~--------   57 (189)
                      ..+++.++|.-.+|||||+-.|..+......                     .....+|++...+.+.+...        
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            4689999999999999999988655432211                     11112333333332222111        


Q ss_pred             --EEEEEEEeCCCcccccc--chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc------
Q psy17231         58 --SIQMQLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH------  127 (189)
Q Consensus        58 --~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~------  127 (189)
                        .--+.++|.+|+.+|..  ++...-...|.+.+|++++..-.. ..+..+--+...  ++|++++.+|.|+-      
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence              22468999999988865  333333456888888887654322 112222222222  79999999995521      


Q ss_pred             -------------------------------------ccCCceEEeeccCCCCHHHHH
Q psy17231        128 -------------------------------------NLISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       128 -------------------------------------~~~~~~~~~Sa~~~~~i~~~~  148 (189)
                                                           +.+.|+|.+|+.+|+++..+.
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence                                                 112388999999999997643

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=1.9e-05  Score=65.13  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+++-+.++||||+|||||++.|......      .|+.-..... .-..++..++.+..+|..  . +..-.....+|.
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPi-TvvsgK~RRiTflEcp~D--l-~~miDvaKIaDL  136 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPI-TVVSGKTRRITFLECPSD--L-HQMIDVAKIADL  136 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCce-EEeecceeEEEEEeChHH--H-HHHHhHHHhhhe
Confidence            45677779999999999999999754321      1111011111 123455678899998832  2 122345677899


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      +++++|.+-.--.+. -.++.-+..+ .-+.++-|.++-|+.
T Consensus       137 VlLlIdgnfGfEMET-mEFLnil~~H-GmPrvlgV~ThlDlf  176 (1077)
T COG5192         137 VLLLIDGNFGFEMET-MEFLNILISH-GMPRVLGVVTHLDLF  176 (1077)
T ss_pred             eEEEeccccCceehH-HHHHHHHhhc-CCCceEEEEeecccc
Confidence            999999765422222 2334333333 345666788886653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.06  E-value=2.5e-05  Score=54.79  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      |++++|+|+.++.+...  .++........++|+|+|+||+|+...              ...++.+||++|.|++++.+
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~   78 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES   78 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence            67899999988765432  233311111247999999999887311              12468899999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      .+.+.+.
T Consensus        79 ~i~~~~~   85 (155)
T cd01849          79 AFTKQTN   85 (155)
T ss_pred             HHHHHhH
Confidence            9877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0085|consensus

Probab=98.04  E-value=5.6e-06  Score=60.99  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=22.3

Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      +.++|.+-.||..+|..+-..+++..-
T Consensus       327 HfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  327 HFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             eeeecccchhHHHHHHHHHHHHHHhhh
Confidence            568899999999999998888876543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.03  E-value=8.8e-05  Score=58.19  Aligned_cols=83  Identities=11%  Similarity=0.053  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCccccccc----hHHHh--------cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231         58 SIQMQLWDTGGMERVASI----TSSYY--------KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNE  124 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~----~~~~~--------~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (189)
                      .+.+.++||||.......    ...+.        ...+..++|.|++.. +.+.+...    ....  -.+.-+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh--CCCCEEEEECC
Confidence            467899999996533221    11111        245678899998743 33333222    2221  24557899998


Q ss_pred             ccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231        125 QCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       125 d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      |....           ..|+.+++  +|++++++-
T Consensus       270 D~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            84322           23777777  788887653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.02  E-value=0.00014  Score=55.83  Aligned_cols=83  Identities=11%  Similarity=0.037  Sum_probs=48.5

Q ss_pred             EEEEEEEeCCCccccccchH----H---Hh-----cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231         58 SIQMQLWDTGGMERVASITS----S---YY-----KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNE  124 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~----~---~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (189)
                      .+.+.++||||.........    .   ..     ..++..++|.|++.. +.+.....    +.+.  -.+.=+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~~--~~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNEA--VGLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHhh--CCCCEEEEEcc
Confidence            36789999999754332111    1   11     237889999999743 33333322    2222  13456899997


Q ss_pred             ccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231        125 QCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       125 d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      |....           ..|+.+++  +|.+++++-
T Consensus       228 De~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            75322           22666666  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01858 NGP_1 NGP-1

Probab=98.01  E-value=2.4e-05  Score=55.00  Aligned_cols=75  Identities=8%  Similarity=0.059  Sum_probs=52.5

Q ss_pred             HHhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------C-CceEEeeccCC
Q psy17231         78 SYYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I-SSTYKTSCKTG  141 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~-~~~~~~Sa~~~  141 (189)
                      ..+..+|++++|.|+.++..  ...+.+++..   ...++|+|+|.||+|+...             . ...+.+||+.+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHHHh---ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence            34678999999999988632  2333443332   2235999999999886321             0 12367899999


Q ss_pred             CCHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQL  155 (189)
Q Consensus       142 ~~i~~~~~~i~~~i  155 (189)
                      .|++++.+.+...+
T Consensus        81 ~~~~~L~~~l~~~~   94 (157)
T cd01858          81 FGKGSLIQLLRQFS   94 (157)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999986643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.00  E-value=5.7e-05  Score=53.26  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++++|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999999765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1424|consensus

Probab=97.93  E-value=1.2e-05  Score=65.28  Aligned_cols=57  Identities=25%  Similarity=0.170  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      .+.|.+||-|||||||+||.|.+.+-...   ..|.|.+.+--++.+..   .+.+.|+||..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV---S~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV---SSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee---ecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            57889999999999999999998764332   33344344444455443   56899999963

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.92  E-value=3.9e-05  Score=62.19  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      +..|+++|++||||||++.+|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999995

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.92  E-value=0.0001  Score=58.10  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCcccccc-c---hHHH--hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--
Q psy17231         59 IQMQLWDTGGMERVAS-I---TSSY--YKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--  129 (189)
                      +.+.++||+|...... +   ...+  ....+..++|.|+... +..+....+.    ..  -.+--+++||.|....  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~----~~--~~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN----EA--VGIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH----hc--CCCCEEEEeeecCCCCcc
Confidence            4689999999754322 1   1112  1246788899998653 2333332222    11  2345688999775332  


Q ss_pred             ---------CCceEEeeccCCCCHHHHHH
Q psy17231        130 ---------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus       130 ---------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                               ..|+.+++  +|.+++++..
T Consensus       297 ~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        297 AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence                     23777776  7888887643

>cd01856 YlqF YlqF

Probab=97.91  E-value=2.7e-05  Score=55.61  Aligned_cols=76  Identities=14%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE  142 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~  142 (189)
                      ....+..+|.+++|+|++++...... .+    .....+.|+++|.||+|+...             ...++.+||+++.
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~   87 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK   87 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            35667899999999999876432111 11    112236899999999997421             1246889999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQLI  156 (189)
Q Consensus       143 ~i~~~~~~i~~~i~  156 (189)
                      |++++.+.+...+.
T Consensus        88 gi~~L~~~l~~~l~  101 (171)
T cd01856          88 GVKKLLKAAKKLLK  101 (171)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.87  E-value=4.3e-05  Score=54.58  Aligned_cols=80  Identities=9%  Similarity=-0.003  Sum_probs=44.9

Q ss_pred             EEEEEEEeCCCcccccc----chHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCC
Q psy17231         58 SIQMQLWDTGGMERVAS----ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLIS  131 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~  131 (189)
                      ...+.++|++|......    ....+.  ...+.+++|++......   ...+...+.+.. + ..-++.||.|......
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g  156 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG  156 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence            34578899999743321    111111  24789999999865432   223344443332 2 3557779998766544


Q ss_pred             ceEEeeccCCC
Q psy17231        132 STYKTSCKTGE  142 (189)
Q Consensus       132 ~~~~~Sa~~~~  142 (189)
                      ..+.++..++.
T Consensus       157 ~~~~~~~~~~~  167 (173)
T cd03115         157 AALSIRAVTGK  167 (173)
T ss_pred             hhhhhHHHHCc
Confidence            55555544443

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0460|consensus

Probab=97.85  E-value=3.6e-05  Score=59.81  Aligned_cols=121  Identities=15%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh----------CCCC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY----------DTFI--SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~----------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      +.++++|.-+|...-|||||..++..          .+|.  +..+.+..-|+++..-++.+.-....+.=.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            57889999999999999999988831          1111  11122223355666655655544455677899999988


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ....-.-..+.|++|+|+.++|... .+.+..+.-.++. .-..++|..||.|.-
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-GV~~ivvfiNKvD~V  183 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-GVKHIVVFINKVDLV  183 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-CCceEEEEEeccccc
Confidence            6544444556799999999998542 1222222222232 224455667997754

>PRK13695 putative NTPase; Provisional

Probab=97.85  E-value=0.0007  Score=48.40  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|++.|++|+|||||++.+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999753

>PRK13796 GTPase YqeH; Provisional

Probab=97.78  E-value=8.3e-05  Score=59.50  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C---CceEEeeccCCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I---SSTYKTSCKTGE  142 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~---~~~~~~Sa~~~~  142 (189)
                      ..+++|+|+.+..     ..|...+.+...+.|+++|+||+|+...                  .   ..++.+||+++.
T Consensus        71 ~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~  145 (365)
T PRK13796         71 ALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGH  145 (365)
T ss_pred             cEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCC
Confidence            4889999987743     2244445444447899999999997421                  0   157899999999


Q ss_pred             CHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQ  154 (189)
Q Consensus       143 ~i~~~~~~i~~~  154 (189)
                      |++++++.+.+.
T Consensus       146 gI~eL~~~I~~~  157 (365)
T PRK13796        146 GIDELLEAIEKY  157 (365)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.76  E-value=2.6e-05  Score=52.14  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999854

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.74  E-value=2.6e-05  Score=56.02  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +||+|+|+||+||||+.++|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999865

>KOG4273|consensus

Probab=97.72  E-value=0.00012  Score=54.79  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             ceEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-ccccccchHHHhcCCc
Q psy17231          8 EQKVILCGEYGV--GKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG-MERVASITSSYYKFAE   84 (189)
Q Consensus         8 ~~~i~i~G~~g~--GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-~~~~~~~~~~~~~~~~   84 (189)
                      ...++++|.+|+  ||-+|+.+|....+.........  ..++.+++..+.....+++.-.+- .+.+. ..-.......
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~--te~hgwtid~kyysadi~lcishicde~~l-pn~~~a~pl~   80 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDA--TEFHGWTIDNKYYSADINLCISHICDEKFL-PNAEIAEPLQ   80 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCc--eeeeceEecceeeecceeEEeecccchhcc-CCccccccee
Confidence            456889999999  99999999998888665533222  244444333222222222221111 01111 1111233456


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ++++|||++...++..++.|+...--.. ---.+.++||-|
T Consensus        81 a~vmvfdlse~s~l~alqdwl~htdins-fdillcignkvd  120 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVD  120 (418)
T ss_pred             eEEEEEeccchhhhHHHHhhcccccccc-chhheecccccc
Confidence            8999999999999999999987433321 122346779944

>PRK08118 topology modulation protein; Reviewed

Probab=97.70  E-value=3.5e-05  Score=54.88  Aligned_cols=23  Identities=43%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.69  E-value=0.00019  Score=55.24  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE  142 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~  142 (189)
                      ....+..+|++++|.|+.++.+.+.  .++....   .++|+|+|.||+|+...             ..+++.+||+++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~   89 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK   89 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            3566778999999999977643221  1121222   26899999999997321             1257889999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy17231        143 GVEEMFADIGRQLILS  158 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~  158 (189)
                      |++++.+.+.+.+.+.
T Consensus        90 gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        90 GVKKIIKAAKKLLKEK  105 (276)
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            9999999887776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK07261 topology modulation protein; Provisional

Probab=97.69  E-value=3.7e-05  Score=54.92  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+|+|+|++|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999998743

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.68  E-value=8.2e-05  Score=51.34  Aligned_cols=64  Identities=13%  Similarity=0.004  Sum_probs=45.7

Q ss_pred             HHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCC
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTG  141 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~  141 (189)
                      ...+..+|++++|+|+.++.+..  .+..|+...   ..++|+++|+||+|+..             ....++.+||+++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~   82 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE   82 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence            35677899999999998876433  445555433   14799999999988632             1236789999987


Q ss_pred             CC
Q psy17231        142 EG  143 (189)
Q Consensus       142 ~~  143 (189)
                      .+
T Consensus        83 ~~   84 (141)
T cd01857          83 NA   84 (141)
T ss_pred             Cc
Confidence            65

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.67  E-value=0.00024  Score=56.64  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~  146 (189)
                      ..++|.+++|++++..-....+..++..+...  ++|.++|+||+|+...             ..+++.+|++++.|+++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~  187 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDV  187 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHH
Confidence            56789999999997554555667777666665  6888999999997432             23779999999999999


Q ss_pred             HHHHHH
Q psy17231        147 MFADIG  152 (189)
Q Consensus       147 ~~~~i~  152 (189)
                      +..++.
T Consensus       188 L~~~L~  193 (356)
T PRK01889        188 LAAWLS  193 (356)
T ss_pred             HHHHhh
Confidence            988874

>KOG0469|consensus

Probab=97.64  E-value=0.00042  Score=56.72  Aligned_cols=139  Identities=18%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC------------CCCCCCCCcccceeeeeEEEEEE----------------CCe
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD------------TFISSSSRKSTLGLDNFNKEYKV----------------DDR   57 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~------------~~~~~~~~~~t~~~~~~~~~~~~----------------~~~   57 (189)
                      .+.-++-++....-|||||...|..+            +|.++..-+..-++++.+.-+..                ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            34456778999999999999999532            22222111122222333322221                233


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCCceE
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTY  134 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~~~~  134 (189)
                      .+-++++|.||+.+|.+...+.++..|++++|+|.-+.   ++-..+..   .+.+   .+.=+++.||.|..-+  +  
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQ---A~~E---RIkPvlv~NK~DRAlL--E--  166 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ---AIAE---RIKPVLVMNKMDRALL--E--  166 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHH---HHHh---hccceEEeehhhHHHH--h--
Confidence            57789999999999999999999999999999997653   22222222   2222   3444578899887543  1  


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                           ...+-+++++.+.+.+...+
T Consensus       167 -----Lq~~~EeLyqtf~R~VE~vN  186 (842)
T KOG0469|consen  167 -----LQLSQEELYQTFQRIVENVN  186 (842)
T ss_pred             -----hcCCHHHHHHHHHHHHhccc
Confidence                 12355777877777665554

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.00031  Score=63.19  Aligned_cols=142  Identities=15%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCC--C--CcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHH
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSS--S--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSS   78 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~--~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   78 (189)
                      .+|+|++|+||||++..--. .|+...  .  .....+ +..+. ..+.+   +-.++||.|-..        -...|..
T Consensus       128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence            47999999999998875422 221111  0  011111 11111 22222   457999998431        1123332


Q ss_pred             H---------hcCCcEEEEEEeCCCh-----hhH----HHHHHHHHHHHHhC-CCCcEEEEeecccccccCCce------
Q psy17231         79 Y---------YKFAEAAILVFSLDNA-----ASF----HVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLISST------  133 (189)
Q Consensus        79 ~---------~~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~~~~------  133 (189)
                      +         .+..+++|+..|+++-     .--    ..++.=+.++.... -..|+.|++||.|+......|      
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~  281 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNK  281 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCH
Confidence            2         3356899999997532     111    11222233333333 579999999998876543322      


Q ss_pred             ----------EEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        134 ----------YKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       134 ----------~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                                |...+....+....+++-.+.+...
T Consensus       282 ~~r~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~r  316 (1188)
T COG3523         282 EEREQVWGVTFPLDARRNANLAAELEQEFRLLLDR  316 (1188)
T ss_pred             HHHhhhceeccccccccccchHHHHHHHHHHHHHH
Confidence                      4455666645555554444444433

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.62  E-value=0.00033  Score=40.17  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         82 FAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      -.+++++++|++...  +.++-...+..++....++|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            457999999998765  45566677778888878999999999987

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.61  E-value=7.3e-05  Score=54.76  Aligned_cols=26  Identities=31%  Similarity=0.346  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      .-.++|+||+|||||||++.+..-+-
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence            35789999999999999999986553

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.58  E-value=6e-05  Score=51.85  Aligned_cols=20  Identities=55%  Similarity=0.901  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+++|++|||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999973

...

>KOG3859|consensus

Probab=97.57  E-value=0.00024  Score=53.98  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      .++|+.+|..|.|||||+..|.+..+.....  ..+++.....++...-.+...++.+.||.|.
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            5899999999999999999999887754322  1233333333333333566788999999985

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=0.0006  Score=56.66  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.|+|+|++|+||||++.+|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999864

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.56  E-value=0.00062  Score=46.87  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231         12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS   91 (189)
Q Consensus        12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   91 (189)
                      +.-|.+|+||||+.-.+...-.. ..  ..+.-++....   .....+.+.++|+|+..  .......+..+|.++++.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~--~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~   75 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LG--KRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT   75 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CC--CcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence            45678999999998877532110 00  11111111100   00111678999999743  3334577889999999888


Q ss_pred             CCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         92 LDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      .+ ..++......++.+.......++.+|.|+.+.
T Consensus        76 ~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          76 PE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            75 44455554555555444345677789998753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.55  E-value=0.00038  Score=53.95  Aligned_cols=78  Identities=17%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE  142 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~  142 (189)
                      ....+..+|++++|+|+.++.+.+.  .++....   .+.|+++|.||+|+...             ..+++.+||+++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~   92 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ   92 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            3566778999999999977643221  1222222   26899999999997421             1257889999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy17231        143 GVEEMFADIGRQLILS  158 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~  158 (189)
                      |++++.+.+...+.+.
T Consensus        93 gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         93 GVKKILKAAKKLLKEK  108 (287)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999887776543

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.55  E-value=0.00091  Score=43.43  Aligned_cols=82  Identities=18%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         11 VILCG-EYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        11 i~i~G-~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      |.+.| ..|+||||+...+...-.. ..  .+..-.+       .+. .+.+.++|+|+...  ......+..+|.++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~--~~vl~~d-------~d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~   68 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RG--KRVLLID-------LDP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIP   68 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CC--CcEEEEe-------CCC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEe
Confidence            45666 5689999998888533221 11  1121111       111 15789999998542  2334777889999988


Q ss_pred             EeCCChhhHHHHHHHHH
Q psy17231         90 FSLDNAASFHVLSQHLL  106 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~  106 (189)
                      .+. +..++..+..++.
T Consensus        69 ~~~-~~~s~~~~~~~~~   84 (104)
T cd02042          69 VQP-SPLDLDGLEKLLE   84 (104)
T ss_pred             ccC-CHHHHHHHHHHHH
Confidence            876 4555666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.54  E-value=6.7e-05  Score=56.03  Aligned_cols=24  Identities=38%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --+.++|++|||||||+|-+.+-.
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999997544

>KOG2484|consensus

Probab=97.54  E-value=9.4e-05  Score=58.55  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=43.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      ...+++.|+|-|++||||+||+|.....+..   ..+.|++.....++.+.   .+.|.|.||..
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v---g~~pGvT~smqeV~Ldk---~i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV---GNVPGVTRSMQEVKLDK---KIRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC---CCCccchhhhhheeccC---CceeccCCcee
Confidence            4568999999999999999999998877544   33344454444444443   57899999964

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.00025  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --..++||+|||||||++.|....
T Consensus        34 ~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHHhhc
Confidence            345699999999999999997543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.53  E-value=0.0011  Score=47.63  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .-.+.++|+.|+|||||++.+.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4578899999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.52  E-value=0.0015  Score=52.60  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .+=|.++||..+|||||+.||.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFM   38 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFM   38 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHH
Confidence            3557899999999999999994

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1533|consensus

Probab=97.52  E-value=3.2e-05  Score=57.17  Aligned_cols=68  Identities=9%  Similarity=0.026  Sum_probs=38.2

Q ss_pred             EEEEEEeCCCccccccch------HHHhcCCc---EEEEEEeC---CChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         59 IQMQLWDTGGMERVASIT------SSYYKFAE---AAILVFSL---DNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~------~~~~~~~~---~~i~v~d~---~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ..+.++|+|||.++-..+      ...++..+   +++-..|.   +++..|-.. -.-+..+...  ..|-+=|..|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m--elphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM--ELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh--cccchhhhhHhH
Confidence            357899999998754322      11222233   33334443   567665333 2233333333  688899999988


Q ss_pred             ccc
Q psy17231        126 CHN  128 (189)
Q Consensus       126 ~~~  128 (189)
                      +..
T Consensus       175 l~~  177 (290)
T KOG1533|consen  175 LLK  177 (290)
T ss_pred             HHH
Confidence            654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.52  E-value=0.00013  Score=53.80  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=24.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |..++..|.|.|++|||||||++.|...
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4457889999999999999999999754

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.51  E-value=0.00052  Score=52.96  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      +..+++|+|++|.|||+++++|....
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHC
Confidence            34679999999999999999998654

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.51  E-value=0.0004  Score=55.55  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-------------------------------C
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-------------------------------D   56 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------------------------~   56 (189)
                      .-.|+++||.||||||-+-+|...-.....  ...++ -....++.+.                               -
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~--~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l  279 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK--KKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL  279 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhcc--CcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence            456789999999999999988633220000  11111 1111111111                               1


Q ss_pred             eEEEEEEEeCCCccccccch----HHHhcCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeecccc
Q psy17231         57 RSIQMQLWDTGGMERVASIT----SSYYKFA--EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQC  126 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~----~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~  126 (189)
                      ..+.+.++||.|...++...    ..++...  .-..+|++++...  +.+...+..+..    .|+ =+++||.|-
T Consensus       280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~----~~i~~~I~TKlDE  350 (407)
T COG1419         280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSL----FPIDGLIFTKLDE  350 (407)
T ss_pred             hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhcc----CCcceeEEEcccc
Confidence            23578999999987655422    3333332  2355667766553  345554444443    333 378899774

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.50  E-value=0.0011  Score=53.56  Aligned_cols=102  Identities=23%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      ...+.++|++|+..-+.-|..++.+++++++|+++++-          ..+.+.-.....+....  .+.|+||++||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            35789999999988888999999999999999997632          22333334444444432  6899999999987


Q ss_pred             cccc-------CCceEEeeccCC---CCHHHHHHHHHHHHHHhhhh
Q psy17231        126 CHNL-------ISSTYKTSCKTG---EGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       126 ~~~~-------~~~~~~~Sa~~~---~~i~~~~~~i~~~i~~~~~~  161 (189)
                      +...       ...||  ...+|   .+.+++.+.+.+.+.+....
T Consensus       315 ~f~~Kl~~~~~l~~~f--p~y~g~~~~~~~~~~~~i~~~f~~~~~~  358 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYF--PDYTGDRPNDVDSAIKFIKNKFLRLNRN  358 (389)
T ss_dssp             HHHHHTTTSSCGGGTS--TTGGSH-TSSHHHHHHHHHHHHHCTHST
T ss_pred             HHHHHccCCCchHhhC--CCCCCCcccCHHHHHHHHHHHHHHhccC
Confidence            5431       11111  12224   47788888888777765543

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK14530 adenylate kinase; Provisional

Probab=97.50  E-value=0.00011  Score=54.50  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999963

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.49  E-value=0.00012  Score=44.04  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |.+.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999854

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.49  E-value=6.9e-05  Score=52.98  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999855

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.49  E-value=0.0023  Score=40.41  Aligned_cols=70  Identities=23%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-hHHHhcCCcEEEEE
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-TSSYYKFAEAAILV   89 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v   89 (189)
                      +++.|.+|+||||+...+...-....   ...         ...+    .+.++|+++....... .......++.++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v   65 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG---KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV   65 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC---CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence            67889999999999999874432111   111         1111    6789999976432221 14566678888888


Q ss_pred             EeCCChh
Q psy17231         90 FSLDNAA   96 (189)
Q Consensus        90 ~d~~~~~   96 (189)
                      .+.+...
T Consensus        66 ~~~~~~~   72 (99)
T cd01983          66 TTPEALA   72 (99)
T ss_pred             cCCchhh
Confidence            8875443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.46  E-value=0.00012  Score=49.38  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999854

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK06217 hypothetical protein; Validated

Probab=97.45  E-value=0.00013  Score=52.67  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999854

>KOG0463|consensus

Probab=97.44  E-value=0.00034  Score=55.29  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ....++.++|...+|||||+-.|..+
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHg  156 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHG  156 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeec
Confidence            44789999999999999999877433

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.43  E-value=0.00016  Score=42.37  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ..+|.|+.|+|||||+.++..--+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            488999999999999999875444

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.43  E-value=0.00026  Score=52.13  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+..-|+|+|++|||||||+++|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45667889999999999999999754

>PRK03839 putative kinase; Provisional

Probab=97.42  E-value=0.00014  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +|+++|++||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999654

>PRK07429 phosphoribulokinase; Provisional

Probab=97.42  E-value=0.0002  Score=56.33  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+++..+++.|.|.|++|||||||++.+...
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l   31 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL   31 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence            7788888999999999999999999999743

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.41  E-value=0.00017  Score=53.54  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      -+.|+||+|||||||++-+..-.-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            578999999999999999976543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.41  E-value=0.00019  Score=51.19  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..-+.|+|++|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346789999999999999999854

>PRK08233 hypothetical protein; Provisional

Probab=97.41  E-value=0.00018  Score=51.61  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.+-|.|.|++|||||||.++|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            4567889999999999999999753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.41  E-value=0.00017  Score=48.64  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ...++++|++|+||||+++.+...-.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC
Confidence            35789999999999999999986554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG2485|consensus

Probab=97.38  E-value=0.00027  Score=54.37  Aligned_cols=63  Identities=24%  Similarity=0.300  Sum_probs=37.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI--SSSSRKSTLGLDNFNK-EYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~--~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~D~~g~   69 (189)
                      ..++++.|+|.||+|||||+|++.....-  .........|.+.... .+.+.... .+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            35789999999999999999998533211  1111122223233222 23333322 3688999994

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.37  E-value=0.00022  Score=52.29  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+...|+|+|++|||||||++.|...
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345567999999999999999999764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.00019  Score=56.42  Aligned_cols=24  Identities=42%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      -++++||+|||||||++.+.+-.-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999986543

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00032  Score=50.82  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +..-|+|+||+|||||||+++|...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3456889999999999999999754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.36  E-value=0.00019  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ||+|.|++|+|||||++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.36  E-value=0.00017  Score=49.22  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            3478999999999999999888553

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.35  E-value=0.0002  Score=53.54  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+++|+|+|+|||||||+.++|..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.35  E-value=0.00019  Score=51.97  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999999654

>TIGR00235 udk uridine kinase

Probab=97.35  E-value=0.00027  Score=52.04  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=22.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.+..-|.|+|++|+|||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            345577889999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG3347|consensus

Probab=97.34  E-value=0.00017  Score=49.72  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +....+|+|.|.||+|||||..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            35678999999999999999999973

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.34  E-value=0.00019  Score=49.31  Aligned_cols=21  Identities=43%  Similarity=0.797  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999854

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.34  E-value=0.0023  Score=41.86  Aligned_cols=99  Identities=19%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC
Q psy17231         14 CGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        14 ~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   93 (189)
                      =+..|+||||+...|...-.....  ..+.-.+....   .   ...+.++|+|+...  ......+..+|.++++.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~--~~~~l~d~d~~---~---~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-   74 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAG--RRVLLVDLDLQ---F---GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-   74 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCC--CcEEEEECCCC---C---CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-
Confidence            356789999988877533221101  11111111111   0   11679999998543  2334567888988888875 


Q ss_pred             ChhhHHHHHHHHHHHHHhC-C-CCcEEEEeec
Q psy17231         94 NAASFHVLSQHLLEIVTYA-E-NAKIFLCGNN  123 (189)
Q Consensus        94 ~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK  123 (189)
                      +..+...+..+++.+.+.. + ...+.+|+|+
T Consensus        75 ~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4555667777777666654 2 3566677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.33  E-value=0.00019  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999754

...

>PRK14532 adenylate kinase; Provisional

Probab=97.32  E-value=0.00021  Score=51.73  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+++|+|||||||+.++|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999974

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.31  E-value=0.00021  Score=51.20  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG3354|consensus

Probab=97.30  E-value=0.003  Score=43.99  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=22.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...+..|+++|.+|+||||+...|..
T Consensus         8 ~~~~k~~i~vmGvsGsGKSTigk~L~~   34 (191)
T KOG3354|consen    8 MGPFKYVIVVMGVSGSGKSTIGKALSE   34 (191)
T ss_pred             cCCCceeEEEEecCCCChhhHHHHHHH
Confidence            445567799999999999999998853

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.29  E-value=0.0003  Score=56.16  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .-.++++|++||||||++.++.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999995

>PRK14531 adenylate kinase; Provisional

Probab=97.28  E-value=0.00026  Score=51.12  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.+|+++|+|||||||+.+++...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.27  E-value=0.00027  Score=48.46  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999743

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG2423|consensus

Probab=97.27  E-value=0.00041  Score=55.15  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--cchHHHhcC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA--SITSSYYKF   82 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~   82 (189)
                      +.+.+.|.++|.||+||||+||.|-..+++...+....   +-....+.+   .-++-++|+||...-.  +.....+  
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE---TKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE---TKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc---chHHHHHHH---HhceeEecCCCccCCCCCchHHHHh--
Confidence            46789999999999999999999998887665432221   111101111   2367899999964222  2223333  


Q ss_pred             CcEEEEEEeCCChhhH
Q psy17231         83 AEAAILVFSLDNAASF   98 (189)
Q Consensus        83 ~~~~i~v~d~~~~~s~   98 (189)
                       .+++=|=.+.+++.+
T Consensus       376 -kGvVRVenv~~pe~y  390 (572)
T KOG2423|consen  376 -KGVVRVENVKNPEDY  390 (572)
T ss_pred             -hceeeeeecCCHHHH
Confidence             456777778887643

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.00023  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++++|++|||||||+|-+.+-
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcC
Confidence            35889999999999999988743

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.27  E-value=0.00029  Score=48.66  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .|.|+|+.|+|||||+++|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999754

>PLN02674 adenylate kinase

Probab=97.25  E-value=0.00027  Score=53.25  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+..+|+++|+|||||+|+.++|..
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHH
Confidence            4468899999999999999999964

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.24  E-value=0.00027  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~   29 (189)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            568999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.23  E-value=0.00028  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.23  E-value=0.00027  Score=50.88  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+++|++||||||+++++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999973

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.23  E-value=0.00033  Score=52.59  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+++++|+|++|||||+|+..+...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999999743

This is thought to be an ATPase involved in viral DNA packaging [].

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00034  Score=55.30  Aligned_cols=25  Identities=36%  Similarity=0.301  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFI   34 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~   34 (189)
                      -+.++||+||||||+++.+.+-..+
T Consensus        33 f~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          33 FVTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4679999999999999999865543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.21  E-value=0.00028  Score=53.40  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|+||.|||||||++.+.+-
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            45679999999999999999753

>PRK13949 shikimate kinase; Provisional

Probab=97.21  E-value=0.00035  Score=49.79  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +|+|+|++|+||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998743

>PRK02496 adk adenylate kinase; Provisional

Probab=97.21  E-value=0.00036  Score=50.34  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++++|+|++|+||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999974

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.19  E-value=0.0067  Score=46.99  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.|+|.|++||||||+++.|..
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~   28 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALED   28 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3688999999999999999963

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.18  E-value=0.00037  Score=50.06  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .-.+.++|++|+|||||++.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3578999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.17  E-value=0.00034  Score=49.44  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ++|+|.|.||+||||+.++|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999997

>PRK00625 shikimate kinase; Provisional

Probab=97.17  E-value=0.0004  Score=49.72  Aligned_cols=23  Identities=35%  Similarity=0.454  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++|+++|.+||||||+.+.+...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999643

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.17  E-value=0.00036  Score=50.92  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |.|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.16  E-value=0.00056  Score=48.92  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+..-|++.|++|+||||+.+.+..
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999999864

>PRK06547 hypothetical protein; Provisional

Probab=97.16  E-value=0.00052  Score=49.10  Aligned_cols=26  Identities=27%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...|+|.|++|||||||.+.|...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            55678889999999999999999754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.15  E-value=0.00048  Score=49.23  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+|+++|++|+|||||.+.+...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999999754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.15  E-value=0.00036  Score=50.52  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +|+|+|++||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.13  E-value=0.00045  Score=49.51  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      -.+.|+|++|+|||||+|-+.+=..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            4688999999999999999975443

>PRK01889 GTPase RsgA; Reviewed

Probab=97.13  E-value=0.00057  Score=54.55  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -+++++|.+|+|||||+|.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            478999999999999999998654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.13  E-value=0.00041  Score=49.86  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+++|+|||||||+.++|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=97.12  E-value=0.00054  Score=51.46  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++.|+|+|+|||||||+.++|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357789999999999999999963

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.10  E-value=0.00093  Score=45.59  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      +...|++.|+.|+|||||++.+...-
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34568899999999999999998664

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK08356 hypothetical protein; Provisional

Probab=97.10  E-value=0.00064  Score=49.57  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.+.|+++|++||||||+.++|..
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999964

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.09  E-value=0.00053  Score=49.63  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++++|++|+|||||++.+.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457899999999999999998854

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01351 adk adenylate kinases

Probab=97.08  E-value=0.00044  Score=51.01  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ||+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999964

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.08  E-value=0.00051  Score=50.28  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      |+|.|++|+||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.08  E-value=0.00042  Score=48.92  Aligned_cols=21  Identities=33%  Similarity=0.437  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+++|++||||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999854

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.00048  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      --|+|+|++|+|||||++.+.+
T Consensus        31 E~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhc
Confidence            3588999999999999999986

>PTZ00301 uridine kinase; Provisional

Probab=97.07  E-value=0.00067  Score=50.08  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      |+.+-|.|.|++|||||||.+++.
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~   24 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIV   24 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHH
Confidence            345678899999999999998875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.07  E-value=0.0006  Score=46.37  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ...+++.|++|+|||+|++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999998554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.06  E-value=0.00053  Score=50.74  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            468899999999999999998653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.06  E-value=0.00055  Score=50.68  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>PRK04040 adenylate kinase; Provisional

Probab=97.06  E-value=0.00066  Score=49.28  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...|+|.|.+||||||+++.+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~   25 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEK   25 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            357899999999999999999654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.05  E-value=0.00055  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++|.|++|+|||++++++...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHH
Confidence            35789999999999999999854

>PRK04195 replication factor C large subunit; Provisional

Probab=97.05  E-value=0.0071  Score=50.36  Aligned_cols=24  Identities=42%  Similarity=0.616  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...++|.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999754

>PRK14529 adenylate kinase; Provisional

Probab=97.05  E-value=0.00058  Score=50.85  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+++|+|||||||+.++|..
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~   22 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKK   22 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.00061  Score=48.83  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ...-+++.||+|+|||||+++|....
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            34567899999999999999998654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.03  E-value=0.00056  Score=48.95  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=16.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ...-.++|.|++|+|||+|++++.
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~   45 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALL   45 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999999885

>PHA00729 NTP-binding motif containing protein

Probab=97.02  E-value=0.00073  Score=50.24  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+|+|.|+||+|||+|..++...
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>PRK14526 adenylate kinase; Provisional

Probab=97.02  E-value=0.00066  Score=50.17  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~   22 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSN   22 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999863

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.02  E-value=0.00063  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.01  E-value=0.00063  Score=50.31  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|+|||||++.+.+..
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998653

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.01  E-value=0.00066  Score=49.99  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.99  E-value=0.00069  Score=49.09  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.99  E-value=0.00068  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.99  E-value=0.0007  Score=49.93  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|+|||||++.+.+.
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999999865

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.99  E-value=0.00064  Score=50.60  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |.|.|++|||||||++.|...
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            579999999999999999753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN02459 probable adenylate kinase

Probab=96.99  E-value=0.00094  Score=50.77  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+++|+++|+||+||||+...+..
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~   51 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSK   51 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.98  E-value=0.00064  Score=50.07  Aligned_cols=22  Identities=36%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++|+|++|+|||||++.+.+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.97  E-value=0.00073  Score=49.86  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-18
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-18
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-18
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-18
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-18
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-18
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		6e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		8e-18
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-18
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-17
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-17
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-17
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-17
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-17
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-17
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-17
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-17
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-17
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-17
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-17
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-17
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-17
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-17
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		6e-17
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		7e-17
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-17
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-16
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-16
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-16
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-16
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-16
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-16
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-16
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-16
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-16
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-16
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		9e-16
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-15
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-15
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-15
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-15
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-15
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-15
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-15
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-15
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-15
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-15
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		8e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-14
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-14
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-14
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-14
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-14
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-14
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-14
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-14
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-14
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-14
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-14
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-14
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-14
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-14
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		9e-14
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		9e-14
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		9e-14
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-13
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-13
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-13
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-13
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-13
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-13
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-13
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-12
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-12
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-12
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-12
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-12
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-12
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-12
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-11
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-11
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-11
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-11
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-11
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-11
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-11
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-11
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-11
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-11
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-11
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-10
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-10
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-10
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-10
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-10
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-10
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-10
1byu_A	216	Canine Gdp-Ran Length = 216		3e-10
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-10
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-10
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-10
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-10
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		8e-10
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		7e-09
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-09
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-09
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-08
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-08
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-08
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		2e-08
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-08
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-08
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-08
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-08
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-08
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-08
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-08
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		5e-08
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-07
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-07
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-07
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-07
1mh1_A	186	Small G-Protein Length = 186		2e-07
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-07
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-07
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-07
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-07
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-07
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-07
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-07
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-07
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-07
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-07
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-07
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-07
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-07
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-07
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-07
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-07
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-07
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-07
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		5e-07
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-07
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-07
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-07
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-07
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-07
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-07
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-07
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-07
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		9e-07
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-06
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-06
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-06
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-06
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-06
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-06
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-06
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-06
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-06
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-06
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-06
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-06
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-06
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-06
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-06
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-06
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-06
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-06
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-06
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-06
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-06
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-06
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-06
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-06
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-06
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-06
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-06
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		5e-06
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-06
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-06
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-06
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-06
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-06
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		6e-06
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-06
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-06
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-06
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		9e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-06
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-06
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		9e-06
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-05
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-05
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-05
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-05
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-05
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-05
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-05
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-05
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-05
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-05
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-05
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-05
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-04
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-04
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-04
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-04
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-04
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-04
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-04

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN   C  
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 59  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 112

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+ L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + +  A++V+ + N  SF   S+ + ++ T    +  I L GN      
Sbjct: 62  ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 124 ---------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
                    EQ    +S  + +TS KTG  V+++F  +   L+
Sbjct: 122 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALL 164

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGK+ L  R+    F++ +   ST+G+D  NK   VD   +++Q+WDT G 
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNN-EQCH 127
           ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA+ +  + L GN  +  H
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 128 NLISST--------------YKTSCKTGEGVEEMFADIGRQL 155
             +                  +TS KTG  V+  F  I ++L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGK+ L RR+    F     + +T+G+D   K  +++   +++Q+WDT G 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN------ 122
           ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L GN      
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 123 ----NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSNR 160
               ++Q     S        +TS K  + VE++F D+  +LI   R
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQ--C 126
           ER  +ITSSYY+ A   I+V+ + +  S+  + Q L EI  YA EN    L GN      
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 127 HNLISST-------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTM 168
             ++ +T              +TS K    VE+ F  +  ++    + R+ L+ +
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGLEVL 179

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G 
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + +  A++V+ + N  SFH  S+ + ++ T    +  I L GN      
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 11  VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70
           ++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G E
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 71  RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           R  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN
Sbjct: 59  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITSSYY+ A   I+V+ + +  S+  + Q L EI  YA EN    L GN
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GKSSL  R+  D F+    ++ST+G   F++   V+D +++ ++WDT G 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+   YY+ A AAI+VF + N ASF    + + E+      N  + L GN     +
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 129 LI------SSTY---------KTSCKTGEGVEEMFADIGRQL 155
                   + TY         +TS KT   V+E+F +I R+L
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCG 121
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L G
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + MQ+WDT G+
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN    + GN  
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
              N   +T               ++TS K    VE+ F  I R   L   + +EL    
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
              I  D
Sbjct: 187 PEPIKLD 193

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  + S  ST+G+D   +   ++++++++Q+WDT G 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTY--TDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +ITSSYY+ A   I+V+ + +  SF  + Q + EI  YA EN    L GN  +C +
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN--KC-D 125
Query: 129 LISSTYKTS 137
           L+S    TS
Sbjct: 126 LVSKRVVTS 134

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR+I++QLWDT G+
Sbjct: 15  KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 73  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + MQ+WDT G 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN    + GN  
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
              N   +T               ++TS K    VE+ F  I R   L   + +EL
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVEL 182

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+S+  R+ YDTF   ++ +ST+G+D  +K   +D+  +++QLWDT G 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTF--DNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNNEQCHN 128
           ER  S+  SY + + AAI+V+ + N  SF   ++ + +I+    ++  I L GN     +
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
           L   TY               +TS K G  ++ +F     +L
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR+I++QLWDT G 
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 66  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + MQ+WDT G 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN    + GN  
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
              N   +T               ++TS K    VE+ F  I R   L   + +EL    
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
              I  D
Sbjct: 187 PEPIKLD 193

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F  S+  K+T+G D   KE  VDDR + MQ+WDT G 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN    + GN  
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
              N   +T               ++TS K    VE+ F  I R   L   + +EL    
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
              I  D
Sbjct: 187 PEPIKLD 193

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G+
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G+
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 66  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G+
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 129 L 129
           L
Sbjct: 149 L 149

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F S +    T+G++  N++ +VD R + +Q+WDT G 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFH--TIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
           ER  S+ + +Y+ A+  +L FS+D+  SF  L     E + YA+
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+IL G+ GVGKSSL  RY  + F   S    T+G++  NK+ +VD   + MQ+WDT G 
Sbjct: 13  KIILLGDGGVGKSSLMNRYVTNKF--DSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 114

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 25/184 (13%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSI 59
           M+S K    KVI+ G+ GVGK+SL  RY  D +  S   K+T+G D   KE  VD D+  
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKY--SQQYKATIGADFLTKEVTVDGDKVA 58
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN 114
            MQ+WDT G ER  S+  ++Y+ A+  +LV+ + NA+SF  +     E + +A     E 
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118
Query: 115 AKIFLCGNN---EQCHNLIS--------------STYKTSCKTGEGVEEMFADIGRQLIL 157
               + GN    E+   ++S                + TS K    V+  F +I R  + 
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 158 SNRS 161
            N++
Sbjct: 179 QNQA 182

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G+
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 127
Query: 129 L 129
           L
Sbjct: 128 L 128

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F   +    T+G++  NK+ +VD   + MQ+WDT G 
Sbjct: 11  KVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F   +    T+G++  NK+ +VD   + MQ+WDT G 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 129 L 129
           L
Sbjct: 149 L 149

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
           ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                      +   L     +TS K G  V+++F  +   L
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA D+F  + +  ST+G+D   K    +D+ I++Q+WDT G+
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   IL + + N  SF+ +     +I TY+ +NA++ L GN
Sbjct: 68  ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G 
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 139
Query: 129 L 129
           L
Sbjct: 140 L 140

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G+
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRH 130
Query: 129 L 129
           L
Sbjct: 131 L 131

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G+
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRH 124
Query: 129 L 129
           L
Sbjct: 125 L 125

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
           ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L GN     +
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124
Query: 129 LIS---------------STYKTSCKTGEGVEEMFADI 151
           L +               S  +TS      VEE F +I
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+ GVGKSSL  R+A +TF  S S  +T+G+D   +  +++   +++Q+WDT G 
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN-NEQCHN 128
           ER  +ITS+YY+     I+V+ + +A SF  + + L EI    ++    L GN N+    
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128
Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ 166
            +  T              ++TS K    VEEMF  I   ++ + +  L  Q
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA D+F  + +  ST+G+D   K    +D+ I++Q+WDT G 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS+L  R+  D F   S  KST+G++   +  +V+++ I+ Q+WDT G+
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIES--KSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L GN     +
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAH 129
Query: 129 L 129
           L
Sbjct: 130 L 130

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGKSS+ +RY    F  +   K T+G+D   ++ +V+D  +++ LWDT G 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-------HLLEIVTYAENAKIFL--- 119
           E   +IT +YY+ A+A +LVFS  +  SF  +S         + +I T     KI L   
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 120 -CGNNEQCHNLISST----YKTSCKTGEGVEEMF 148
            C  NE+   L        Y+TS K    V E+F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA DTF  + +  ST+G+D   K     ++ +++Q+WDT G 
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTF--TPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G   VGK+S   RYA D+F  + +  ST+G+D   K     D+ I++Q+WDT G 
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   +L++ + N  SF  +     +I TY+ +NA++ L GN
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGKS L  R++ DT+  ++   ST+G+D   K  ++D +++++Q+WDT G 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
           ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L GN
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGKS L  R++ DT+  ++   ST+G+D   K  ++D +++++Q+WDT G 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
           ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L GN
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGKS L  R++ DT+  ++   ST+G+D   K  ++D +++++Q+WDT G 
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
           ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L GN
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 134

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE GVGK++L  R+  + F  S   ++T+G++   +   +   +++ Q+WDT G+
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGN 122
           ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +AE    + L GN
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE GVGK++L  R+  + F  S   ++T+G++   +   +   +++ Q+WDT G+
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGN 122
           ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +AE    + L GN
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSS+  R+  + F  + +++ T+G     +   +++ +++ ++WDT G 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDF--AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
           ER AS+   YY+ A+AA++V+ +    SF      + E+   A ++  I L GN      
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 124 ---------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQLIL 157
                    E+   L        ++TS KTGE V ++F  IG ++ L
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+  VGK+ + +R+    F  S  + ST+G+D   K  ++  + +++Q+WDT G 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAF--SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +IT SYY+ A  AIL + +   +SF  +   + ++  YA  N    L GN      
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 129 L----------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN 159
           L                I    +TS K    VEE F  +  +LI+ +
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++  + F   S+   T+G++  ++   V  +++++Q+WDT G 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNH--TIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +  T A  N  + LCGN +    
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
               T+               +TS  TGE VEE F    R ++
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGG 68
           K++L G+ GVGKS+L  R+  D F   S  KST+G++   K  ++ +++ I+ Q+WDT G
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLES--KSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCH 127
            ER  +ITS+YY+ A  A+LV+ +    SF  + + L E+   A+ N  I L GN     
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLK 126
Query: 128 NL 129
           +L
Sbjct: 127 HL 128

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ GE GVGKSSL  R+  DTF       +T+G+D   K   VD    ++ +WDT G 
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTF--DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF--LCGN 122
           ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY     I   L GN
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  + S  +T+G+D   K   ++ + +++QLWDT G 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  + S  +T+G+D   K   ++ + +++QLWDT G 
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  + S  +T+G+D   K   ++ + +++QLWDT G 
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++    F   S+   T+G++  +K   V  + +++Q+WDT G+
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I LCGN +    
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 127
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
               T+               +TS  TGE VEE F    R+++
Sbjct: 128 DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 62  DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++    F   S+   T+G++  +K   V  + +++Q+WDT G 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I LCGN +    
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
               T+               +TS  TGE VEE F    R+++
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 2   KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 59
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G+ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 60  DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 119
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 120 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  + S  +T+G+D   K   ++ + +++Q+WDT G 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++    F   S+   T+G++  +K   V  + +++Q+WDT G 
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I LCGN +    
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 130
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
               T+               +TS  TGE VEE F    R+++
Sbjct: 131 DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  + S  +T+G+D   K   ++ + +++Q+WDT G 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS+L  R+  + F   S  KST+G++   +  +++ + I+ Q+WDT G 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
           ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L GN
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 62  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESPVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESKVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESRVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESEVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESLVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
               N  +  ++               TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++WDT G+
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L GN     +
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
             +  ++               TS KT   V E+F  I ++L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F++      T+G++   +  +V  + I++Q+WDT G 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L GN      
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
               TY               + S KTGE VE+ F +  +++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++W
Sbjct: 5   KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  + +  L GN 
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 EQCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSRL 163
               N     Y               +TS KT   V ++F  I ++L  S    L
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL 177

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSSL  R+    F     ++ST+G     +   +DD +++ ++WDT G 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L GN     +
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
             +  ++               TS KT   V E+F  I ++L
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F  +    +TLG     K+  +  + + + +WDT G 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
           ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC  GN     
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 124
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
           ++ H  I           +  Y TS K  +G+EE+F D+ +++I
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+ +  R++ D F  +S+  ST+G+D   +  ++D + I++Q+WDT G 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA 112
           ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F++      T+G++   +  +V  + I++Q+WDT G 
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
            R  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L GN      
Sbjct: 90  GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
               TY               + S KTGE VE+ F +  +++
Sbjct: 150 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+ +  R++ D F  +S+  ST+G+D   +  ++D + I++Q+WDT G 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA 112
           ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 110

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KV L G+ GVGKSS+  R+  D F  + S   T+G     K     +   +  +WDT 
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS--PTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGN---- 122
           G ER  S+   YY+ + AA++V+ +    SF+ L + + E+  +  EN  + + GN    
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140
Query: 123 -----------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                       E   ++ +   +TS K    +EE+F  I RQ+
Sbjct: 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F  +    +TL      K+  +  + + + +WDT G 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
           ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC  GN     
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 138
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
           ++ H  I           +  Y TS K  +G+EE+F D+ +++I
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 182

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSSL  R+    F     ++ST+      +   +DD +++ ++WDT G 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L GN     +
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
             +  ++               TS KT   V E+F  I ++L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F  +    +TL      K+  +  + + + +WDT G 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
           ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC  GN     
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 124
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
           ++ H  I           +  Y TS K  +G+EE+F D+ +++I
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D + I++Q+WDT G 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQC-- 126
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L GN      
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 127 ---------------HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                          H LI    +TS KT   VEE F +  +++
Sbjct: 130 RREVKKEEGEAFAREHGLI--FMETSAKTASNVEEAFINTAKEI 171

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D + I++Q+WDT G 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNNEQC-- 126
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   + + N  I L GN      
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 127 ---------------HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                          H LI    +TS KT   VEE F +  +++
Sbjct: 141 RRDVKREEGEAFAREHGLI--FMETSAKTACNVEEAFINTAKEI 182

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+I+ G+  VGK+ L  R+    F   +  ++T+G+D   +   +D   I++QLWDT G 
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 70  ERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYAENAKIFLCG 121
           ER   S+   YY+   A + V+ + N ASFH L        QHLL     A +    L G
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----ANDIPRILVG 134
Query: 122 N 122
           N
Sbjct: 135 N 135

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 18/133 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE--YKVDD--------RSI 59
           K +  G+ GVGK+S+  +Y    F  +S   +T+G+D   K   Y+ +         + I
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKF--NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENA 115
            +QLWDT G+ER  S+T+++++ A   +L+F L N  SF    + +SQ  L++  Y+EN 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYSENP 128
Query: 116 KIFLCGNNEQCHN 128
            I LCGN     +
Sbjct: 129 DIVLCGNKSDLED 141

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 63
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
           +E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN    
Sbjct: 64  LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
                   E+  N       +  +TS KT   V+++F D+ R++
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+I+ G+  VGK+ L  R+    F   +  ++T+G+D   +   +D   I++QLWDT G 
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 70  ERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYAENAKIFLCG 121
           ER   S+   YY+   A + V+   N ASFH L        QHLL     A +    L G
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL-----ANDIPRILVG 143
Query: 122 N 122
           N
Sbjct: 144 N 144

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 61
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
            E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN    
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
                   E+  N       +  +TS KT   V+++F D+ R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 75
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
            E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN    
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
                   E+  N       +  +TS KT   V+++F D+ R++
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 63
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
            E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN    
Sbjct: 64  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
                   E+  N       +  +TS KT   V+++F D+ R++
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 71
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
            E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN    
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
                   E+  N       +  +TS KT   V+++F D+ R++
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+  VGKSS   R   + F  + S  +TLG+D   K   VD     +QLWDT G 
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENIS--ATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  SI  SY++ A+  +L++ +    SF  + + +  I   A E   I L GN     +
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
Query: 129 LISSTYKTSCKTGEGVEEM 147
             ++T    C  G   E++
Sbjct: 148 -TAATEGQKCVPGHFGEKL 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 8   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 64
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNNEQ 125
           +E  A+I  +Y++  E  +LVFS+    SF   +   + +L +    +   + + GN   
Sbjct: 65  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD 124
Query: 126 CHNLISST---------------YKTSCKTGEGVEEMFADIGRQL 155
                                   +TS KT   V+++F D+ R++
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
            KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + DT G
Sbjct: 4   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 60
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNN-- 123
           +E  A+I  +Y++  E  +LVFS+    SF   +   + +L +    +   + + GN   
Sbjct: 61  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD 120
Query: 124 --EQCHNLISST-----------YKTSCKTGEGVEEMFADIGRQL 155
             E+    +               +TS KT   V+++F D+ R++
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K    D +           +
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
            +QLWDT G+ER  S+T+++++ A   +L+F L +  SF  +   +  L+   Y EN  I
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
            L GN          NE+    ++  Y     +TS  TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K    D +           +
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
            +QLWDT G+ER  S+T+++++ A   +L+F L +  SF  +   +  L+   Y EN  I
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
            L GN          NE+    ++  Y     +TS  TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KV L G+ GVGKSS+  R+  D+F    +   T+G     K  +  +   +  +WDT 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN---- 123
           G+ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   + +     N    
Sbjct: 64  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 124 ------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                       +   ++ +   +TS K    + E+F +I R++
Sbjct: 124 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G+
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G+
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 132 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 171

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G+
Sbjct: 8   KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 126 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 165

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K    D +           +
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
            +QLWDT G+ER  S+T+++++ A   +L F L +  SF  +      L+   Y EN  I
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
            L GN          NE+    ++  Y     +TS  TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K    D +           +
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
            +QLWDT G+ER  S+T+++++ A   +L F L +  SF  +      L+   Y EN  I
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
            L GN          NE+    ++  Y     +TS  TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           +VP  K++L G+ G GK++  +R+    F       +T+G++     +  +   I+  +W
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKFDVW 59
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
           DT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 60  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 117

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           +VP  K++L G+ G GK++  +R+    F       +T+G++     +  +   I+  +W
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKFDVW 58
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
           DT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 59  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 116

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 135 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 186

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KV L G+ GVGKSS+  R+  D+F    +   T+G     K  +  +   +  +WDT 
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN---- 123
           G ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   + +     N    
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 124 ------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                       +   ++ +   +TS K    + E+F +I R++
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+   T  S     +TLG++     +  +   I+  +WDT G 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHL--TGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 135 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 186

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 123 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F        TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 2   ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM 61
           A+ +VP  K++L G+ G GK++  +R+    F       +T+G++     +  +   I+ 
Sbjct: 6   ANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKF 63
Query: 62  QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
            +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCG
Sbjct: 64  DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 123
Query: 122 N 122
           N
Sbjct: 124 N 124

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
                     +  NL    Y  S K+    E+ F  + R+LI      LE   M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F  +    +T+G+D   K    + +           +
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
            +QLWDT G ER  S+T+++++ A   +L+F L +  SF  +   +  L+   Y EN  I
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
            L GN          NE+    ++  Y     +TS  TG+ VE+
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F        TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           E+   +   YY  A+ AI+ F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                     +  NL    Y  S K+    E+ F  + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + L GN   
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
                  + Q  +L  S      +TS KT +GVE+ F  + R++
Sbjct: 120 LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + L GN   
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
                  + Q  +L  S      +TS KT +GVE+ F  + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 3   EYKLVVVGARGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + L GN   
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
                  + Q  +L  S      +TS KT +GVE+ F  + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 3   EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + L GN   
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
                  + Q  +L  S      +TS KT +GVE+ F  + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ +   Y  + F   +    T+  DNF+    VD + + + LWDT G 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH- 127
           E  + +    Y+ A+  +L FSL + AS+ +VL + + E+  +A N  I L G       
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127
Query: 128 ---------NLISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLE 164
                    N+I+ST               + S KT + V+ +F D   +++L    R E
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVVLQPPRRKE 186
Query: 165 LQ 166
           + 
Sbjct: 187 VP 188

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ +   Y  +TF   +    T+  DNF+    VD  ++ + LWDT G 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y+ A+  IL FSL + AS+ +V  + + E+  YA    I L G
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F            +N+  + +VD + ++
Sbjct: 2   MAAIR---KKLVIVGDVACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVE 55
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 116 VGNKKDLRN 124

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 7   PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
           PE KV + G    GKS+L  RY   T++   S +       F KE  VD +S  + + D 
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG----GRFKKEIVVDGQSYLLLIRDE 74
Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNE 124
           GG   +      +  + +A + VFSL++  SF  +  + L + ++  A    + L G  +
Sbjct: 75  GGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 125 QCH-----------------NLISSTYKTSCKT-GEGVEEMFADIGRQLI 156
                               +L   TY  +C T G  VE +F D+ ++++
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN-- 123
           G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + L GN   
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 124 --------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                   +Q  +L  S      +TS KT +GV++ F  + R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + L GN   
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
Query: 123 -------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                   +Q  +L  S      +TS KT +GV++ F  + R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F   +    T+  +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDVACGKTCLLIVFSKDQF--PAVYVPTV-FENYVADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E         Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 115 VGNKKDLRN 123

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 4   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 57
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 58  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 118 VGNKKDLRN 126

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 115 VGNKKDLRN 123

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 3   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 117 VGNKKDLRN 125

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 3   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 117 VGNKKDLRN 125

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 2   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 55
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 116 VGNKKDLRN 124

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 3   MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 117 VGNKKDLRN 125

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ L   Y  +TF   +    T+  DNF+    V+  ++ + LWDT G 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCG 121
           E    +    Y+ A+  IL FSL + AS+  +S+  + E+  YA    I L G
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVG 119

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ +   Y  +TF   +    T+  DNF+    VD  ++ + LWDT G 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTF--PTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y+ A+  +L FSL + AS+ ++  + L E+  YA    I L G
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVG 117

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + +++ LWDT G
Sbjct: 10  KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 66
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
            E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   
Sbjct: 67  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 126
Query: 128 N 128
           N
Sbjct: 127 N 127

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 21  MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYIADIEVDGKQVE 74
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 120 CGNNE 124
            GN +
Sbjct: 135 VGNKK 139

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +L G+  VGK+SL   Y  + +    +       DNF+    VD R +++QL DT G 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGY---PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCGNN 123
           +    +    Y   +  +L FS+ + +SF  +S+  + EI  +   A I L G  
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 21  MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYIADIEVDGKQVE 74
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIIL 134
Query: 120 CGNNE 124
            GN +
Sbjct: 135 VGNKK 139

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 119

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L    + D F        T+  +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 115 VGNKKDLRN 123

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L    + D F            +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDGACGKTCLLIVNSKDQFPEVYV---PTVFENYVADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 115 VGNKKDLRN 123

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L    + D F        T+  +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
            GN +   N
Sbjct: 115 VGNKKDLRN 123

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L    + D F        T+  +N+  + +VD + +++ LWDT G
Sbjct: 9   KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 65
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
           +E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   
Sbjct: 66  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 125
Query: 128 N 128
           N
Sbjct: 126 N 126

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 118

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G+
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT 
Sbjct: 5   EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDAQQCMLEILDTA 61
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   ++  + L GN   
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 123 --------NEQCHNLIS-----STYKTSCKTGEGVEEMFADIGRQL 155
                    EQ  NL       +  ++S K+   V E+F D+ RQ+
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F   S        DN++    VD + + + LWDT G 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 124

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE---DSYRKQVEVDCQQCMLEILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   E+  + L GN   
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 123 --------NEQCHNLI-----SSTYKTSCKTGEGVEEMFADIGRQL 155
                    EQ  NL       +  ++S K+   V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDCQQCMLEILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   E+  + L GN   
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 123 --------NEQCHNLI-----SSTYKTSCKTGEGVEEMFADIGRQL 155
                    EQ  NL       +  ++S K+   V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 134

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 121

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L    + D F        T+  +N+  + +VD + +++ LWDT G
Sbjct: 4   KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 60
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
            E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 128 N 128
           N
Sbjct: 121 N 121

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L    + D F        T+  +N+  + +VD + +++ LWDT G
Sbjct: 4   KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 60
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
            E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 128 N 128
           N
Sbjct: 121 N 121

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDAQQCMLEILDTA 59
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   ++  + L GN   
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 123 --------NEQCHNLIS-----STYKTSCKTGEGVEEMFADIGRQL 155
                    EQ  NL       +  ++S K+   V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 3   SIKVPEQ----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS 58
           SI  P Q    K+++ G+   GK++L   +A D F            +N+   +++D + 
Sbjct: 14  SIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQR 70
Query: 59  IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKI 117
           I++ LWDT G     ++    Y  ++A ++ F +    +   VL +   EI  +  N K+
Sbjct: 71  IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM 130
Query: 118 FLCG 121
            L G
Sbjct: 131 LLVG 134

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F            +N+   +++D + I++ LWDT G 
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 139

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+   +K+++ G+   GK+ L    + D F            +N+  + +VD + ++
Sbjct: 1   MAAIR---KKLVIVGDGACGKTCLLIVNSKDQFPEVYV---PTVFENYIADIEVDGKQVE 54
Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNE 124
            GN +
Sbjct: 115 VGNKK 119

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F            +N+   +++D + I++ LWDT G 
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 118

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DTGG E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 21  KSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80
           KS+L  ++   TFI       T+  D + KE +VD     +++ DT G E+ AS+   Y 
Sbjct: 16  KSALTVQFVTGTFIEKYD--PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
Query: 81  KFAEAAILVFSLDNAASFH---VLSQHLLEIVTYAENAKIFLCGNNEQCHNLISST---- 133
           K  +  ILV+SL N  SF     +   ++ +  Y E   + L GN     +    +    
Sbjct: 73  KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSEG 131
Query: 134 -----------YKTSCKTGEGVEEMFADIGRQL 155
                       +TS K+   V+E+FA+I RQ+
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFIS--SSSRKSTLGLDNFNKEYKVDDRSIQMQ 62
           K  E K+ + G  GVGKS+L  R+    FI     + +ST     +  +  +DD  + M+
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST-----YRHQATIDDEVVSME 79
Query: 63  LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLS-QHLLEIVTYAENAKIFLC 120
           + DT G E        + ++ E  +LV+ + +  SF  VL  +++L+ +   +N  + L 
Sbjct: 80  ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 121 GNNEQCHN---------------LISSTYKTSCKTGEG-VEEMFADIGRQL 155
           GN     +               L  + Y+ S  TGEG + E+F ++ R++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + AS+ +V ++   E+  +  +  I L G  
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + AS+ +V ++   E+  +  +  I L G  
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 123

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 43  DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
            + R++
Sbjct: 163 TLVREI 168

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  +  I L G  
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  +  I L G  
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  +              DN++    VD + + + LWDT G 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAL---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L G 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + ASF +V ++   E+  +  +  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 116

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L   ++ D F            +N+  + +VD + +++ LWDT G
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEF---PEVYVPTVFENYVADIEVDGKQVELALWDTAG 82
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNE 124
            E    +    Y   +  ++ FS+D+  S  ++  + + E+  +  N  I L  N +
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 58/199 (29%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLG------------------------- 44
           K +L GE  VGKSS+  R   DTF  +++  +T+G                         
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 45  ------------LDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSL 92
                       + N +  Y  +  +I+  +WDT G ER ASI   YY+ A  AI+VF +
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 93  DNAASFHVLSQHLLEIVTYAENAKIFLCGNN----------------EQCHNLISSTYKT 136
            N+ +    ++  +  +  + N  I L  N                  Q +NL+    +T
Sbjct: 127 SNSNTLD-RAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLF--IQT 183
Query: 137 SCKTGEGVEEMFADIGRQL 155
           S KTG  ++ +F  +  ++
Sbjct: 184 SAKTGTNIKNIFYMLAEEI 202

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 45  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 104
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 105 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 164
Query: 150 DIGRQL 155
            + R++
Sbjct: 165 TLVREI 170

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 44  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 103
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 104 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 163
Query: 150 DIGRQL 155
            + R++
Sbjct: 164 TLVREI 169

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FSL + AS+ +V ++   E+  +  +  I L G  
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 116

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 43  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
            + R++
Sbjct: 163 TLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 43  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
            + R++
Sbjct: 163 TLVREI 168

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N+ SF  ++ + 
Sbjct: 56  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYR 115
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN           +Q H L  S      +TS KT +GVE+ F 
Sbjct: 116 EQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175
Query: 150 DIGRQL 155
            + R++
Sbjct: 176 TLVREI 181

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   YA D F            D++     V  +   + L+DT G 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
           E    +    Y   +  ++ FS+ N ASF +V  + + E+  YA N    L G  
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGG 68
           K+++ G+   GK+SL   +A +TF      K T+GLD F +   +  + ++ +Q+WD GG
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETF--GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVL 101
                 +   Y   A+  +LV+ + N  SF  L
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL 98

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R+ 
Sbjct: 158 TLVREF 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS--IQMQLWDTG 67
           K+ L G+ GVGK++   R     F    +  +T+G  N    + +DD+   I+  +WDT 
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRF--EKNYNATVGAVNHPVTF-LDDQGNVIKFNVWDTA 69
Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFLCGNNEQC 126
           G E+ A +   YY  A  AIL F + +  +   L++ + E      N A I +C N    
Sbjct: 70  GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129
Query: 127 HN 128
            N
Sbjct: 130 KN 131

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  +  + 
Sbjct: 39  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 98
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
            +I  V  +E+  + L GN           +Q  +L  S      +TS KT +GV++ F 
Sbjct: 99  EQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
Query: 150 DIGRQL 155
            + R++
Sbjct: 159 TLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  +  + 
Sbjct: 39  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 98
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
            +I  V  +E+  + L GN           +Q  +L  S      +TS KT +GV++ F 
Sbjct: 99  EQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
Query: 150 DIGRQL 155
            + R++
Sbjct: 159 TLVREI 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D     + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 30  YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89
           YD  I  S RK  +          +D  +  + + DT G E  +++   Y +  E  + V
Sbjct: 32  YDPTIEESYRKQVV----------IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81
Query: 90  FSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN----------NEQCHNLISS----T 133
           F+++N  SF  + Q+  +I  V  +++  + L GN          + Q  +L  S     
Sbjct: 82  FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPY 141
Query: 134 YKTSCKTGEGVEEMFADIGRQL 155
            +TS KT +GVE+ F  + R++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT G E  +++   Y +  E  + VF+++N  SF  +  + 
Sbjct: 56  DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 115
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
            +I  V  +E+  + L GN           +Q  +L  S      +TS KT +GV++ F 
Sbjct: 116 EQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 175
Query: 150 DIGRQL 155
            + R++
Sbjct: 176 TLVREI 181

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ G GK+SL   +A   F  S +       + +    +V  + + + +WDT G 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
           +    +   +Y  A   +L F + +  SF ++ ++   E+  + +   I + G
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+++ G+   GK+ L    +   F        T+  +N+  + +VD R +++ LWDT G
Sbjct: 11  RKLVIVGDGACGKTCLLIVNSKGQF--PEVYVPTV-FENYVADVEVDGRRVELALWDTAG 67
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG------ 121
            E    +    Y  +   ++ FS+D   S  +V  + + E++ + +   I L G      
Sbjct: 68  QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127
Query: 122 NNEQ--------------------CHNLISST--YKTSCKTGEGVEEMF 148
           N+ Q                      + I +T  Y+ S KTG GV E+F
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT   E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +D  +  + + DT   E  +++   Y +  E  + VF+++N  SF  + Q+ 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
            +I  V  +++  + L GN          + Q  +L  S      +TS KT +GVE+ F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
            + R++
Sbjct: 158 TLVREI 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 10  KVILCGEYGVGKSSLFRRYA--YDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLW 64
           +V+L GE GVGKS+L   +A  +D+  S       LG D + +   VD  S   I + +W
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDC---EVLGEDTYERTLMVDGESATIILLDMW 95
Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
           +  G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN
Sbjct: 96  ENKGENE--WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153
Query: 123 NE---QCHNLISST------------YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
                +C  +  S              +TS      V+E+F  I RQ+ L   S+
Sbjct: 154 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+  VGK+ L   ++       ++   T+  +NF+   K  +    + LWDT G 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTV-FENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCG 121
           E    +    Y  ++  +L F+++N  SF  +S     EI  Y + AK  L G
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 134

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+  VGK+ L   ++       ++   T+  +NF+   K  +    + LWDT G 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTV-FENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCG 121
           E    +    Y  ++  +L F+++N  SF  +S     EI  Y + AK  L G
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 133

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
           +V+L GE GVGKS+L   +A     S  S    LG D + +   VD  S   I + +W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFA-GVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
            G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN  
Sbjct: 67  KGENE--WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 ---QCHNLISST------------YKTSCKTGEGVEEMFADIGRQLIL 157
              +C  +  S              +TS      V+E+F  I RQ+ L
Sbjct: 125 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 172

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
           +V+L GE GVGKS+L   +A     S  S    LG D + +   VD  S   I + +W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
            G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN  
Sbjct: 67  KGEN--EWLHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 QCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSR 162
                   +                +TS      V+E+F  I RQ+ L   S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
           +V+L GE GVGKS+L   +A     S  S    LG D + +   VD  S   I + +W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
            G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN  
Sbjct: 67  KGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 QCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSR 162
                   +                +TS      V+E+F  I RQ+ L   S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 3   SIKVPEQ-----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR 57
           S++ P+      K++L G+   GK+++ +  A D +    +   T+  +N+    + +++
Sbjct: 1   SMRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQ 57
Query: 58  SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAK 116
            +++ LWDT G     ++    Y  ++A +L F +    +    L +   EI+ Y  + +
Sbjct: 58  RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 117
Query: 117 IFLCG 121
           + L G
Sbjct: 118 VLLIG 122

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+   GK+++ +  A D +    +   T+  +N+    + +++ +++ LWDT G 
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQRVELSLWDTSGS 85
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A +L F +    +    L +   EI+ Y  + ++ L G
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 138

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+   GK+++ +  A D +    +   T+  +N+    + +++ +++ LWDT G 
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQRVELSLWDTSGS 68
Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
               ++    Y  ++A +L F +    +    L +   EI+ Y  + ++ L G
Sbjct: 69  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 121

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70  ERVASITSSYY-------------------KFAEAAILVFSLDNAASF-HVLSQHLLEIV 109
           E    +    Y                     A+  ++ FSL + ASF +V ++   E+ 
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 110 TYAENAKIFLCGNN 123
            +  N  I L G  
Sbjct: 124 HHCPNTPIILVGTK 137

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+ + G   VGKSSL  ++    F+ S+        + F K   V+ +   +QL DT G
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIE---NTFTKLITVNGQEYHLQLVDTAG 61
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
            +  +    +Y       ILV+S+ +  SF V+      LL++V   +   I L GN + 
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 120
Query: 126 CH 127
            H
Sbjct: 121 LH 122

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+ + G   VGKSSL  ++    F+ S         + F K   V+ +   +QL DT G
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 63
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
            +  +    +Y       ILV+S+ +  SF V+      LL++V   +   I L GN + 
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 122
Query: 126 CH 127
            H
Sbjct: 123 LH 124

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+ + G   VGKSSL  ++    F+ S         + F K   V+ +   +QL DT G
Sbjct: 2   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 58
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
            +  +    +Y       ILV+S+ +  SF V+      LL++V   +   I L GN + 
Sbjct: 59  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 117
Query: 126 CH 127
            H
Sbjct: 118 LH 119

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9   QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           +K+ + G   VGKSSL  ++    F+ S         + F K   V+ +   +QL DT G
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 63
Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
            +  +    +Y       ILV+S+ +  SF V+      LL++V   +   I L GN + 
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 122
Query: 126 CH 127
            H
Sbjct: 123 LH 124

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E ++++ G  G GK+++  +      I++     T+G   FN E  V  ++I   +WD G
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP---TIG---FNVE-TVQYKNISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILVF 90
          G +R+ S+   YY+  E  I V 
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVI 92

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 46  DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
           D++ K+  +DDR+ ++ + DT G E   ++   Y +  E  +LVFS+ +  SF  + +  
Sbjct: 40  DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQ 99
Query: 106 LEIVTYAENAK--IFLCGNN 123
            +I+   +  +  + L GN 
Sbjct: 100 RQILRVKDRDEFPMILIGNK 119

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E ++++ G  G GK+++  +      I++     T+G   FN E  V  ++I   +WD G
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP---TIG---FNVE-TVQYKNISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILV 89
          G +R+ S+   YY+  E  I V
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFV 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-38
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-38
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-37
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-36
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-35
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-35
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-35
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-35
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-35
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-35
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-35
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-35
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-35
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-35
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-35
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-34
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-34
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-34
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-34
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-34
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-34
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-34
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-34
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-34
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-34
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-34
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-34
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-34
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-34
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-34
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-34
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-34
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-34
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-33
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-33
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-32
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-32
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-31
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-31
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-31
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-31
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-31
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-31
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-31
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-31
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	7e-31
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-31
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-30
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-30
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-30
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-30
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-30
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-30
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-30
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-30
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-29
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-29
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-29
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-28
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-28
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-27
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-25
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-25
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-24
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	9e-24
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-21
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-21
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-21
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	8e-21
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	9e-21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-20
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	8e-20
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	8e-20
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-20
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	7e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	9e-05
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	9e-05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-04
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-04
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-04
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	7e-04

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  131 bits (331), Expect = 7e-39
 Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 23/193 (11%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           M S K    KVI+ G+ GVGK+SL  +Y    F +    K+T+G D   KE  VDDR + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVT 58

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 115
           MQ+WDT G ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118

Query: 116 KIFLCGN--------------NEQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLILSNR 160
              + GN                 C++  +  Y +TS K    VE+ F  I R   L   
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQE 177

Query: 161 SRLELQTMGAGGI 173
           + +EL       I
Sbjct: 178 TEVELYNEFPEPI 190

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  131 bits (331), Expect = 1e-38
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 25/189 (13%)

Query: 1   MASIKVPEQ----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD 56
           MAS    E     K++L G+ G GK++  +R+    F       +TLG++     +  + 
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNR 61

Query: 57  RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
             I+  +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  
Sbjct: 62  GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP 121

Query: 117 IFLCGN------------NEQCH---NLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
           I LCGN            +   H   NL    Y  S K+    E+ F  + R+LI     
Sbjct: 122 IVLCGNKVDIKDRKVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDP 177

Query: 162 RLELQTMGA 170
            LE   M A
Sbjct: 178 NLEFVAMPA 186

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  127 bits (323), Expect = 3e-38
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGKSS+ +RY    F      K T+G+D   ++ +V+D  +++ LWDT G 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
           E   +IT +YY+ A+A +LVFS  +  SF  +S    ++V    +    L  N       
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 123 ----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
               NE+   L        Y+TS K    V E+F  +  + +
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  124 bits (315), Expect = 7e-37
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 22/167 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F +      T+G++  NK+ +VD   + MQ+WDT G 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGN-- 122
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA     E+    + GN  
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126

Query: 123 ------------NEQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
                          C +     Y +TS K    V   F +  R+++
Sbjct: 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  122 bits (308), Expect = 8e-36
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F       +TLG     K+  +  + + + +WDT G 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  ++   YY+ +  AILV+ + +  SF  +   + E+         + + GN      
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                 ++  +   S     Y TS K  +G+EE+F D+ +++I
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  121 bits (307), Expect = 1e-35
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+ GVGKSSL  R+A +TF  S    +T+G+D   +  +++   +++Q+WDT G 
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
           ER  +ITS+YY+     I+V+ + +A SF  + + L EI    ++    L GN       
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 123 ----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                E  +          ++TS K    VEEMF  I   ++
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  121 bits (306), Expect = 2e-35
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  S    +T+G+D   K   ++ + +++Q+WDT G 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN      
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122

Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLI 156
            + +                ++S K  + V E+F  + + + 
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  120 bits (304), Expect = 3e-35
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 22/164 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSSL  R+    F      +ST+G     +   +DD +++ ++WDT G 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L GN      
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125

Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                  E       ++L+    +TS KT   V E+F  I ++L
Sbjct: 126 KRAVDFQEAQSYADDNSLLF--METSAKTSMNVNEIFMAIAKKL 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  122 bits (307), Expect = 3e-35
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G+
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L GN      
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                 E+             +TS K G  V+++F  +   L
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  121 bits (305), Expect = 3e-35
 Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 27/174 (15%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD---RSIQMQLWDT 66
           K+++ G  G GK++L ++           + +T+G+D  +   ++ D   R + + +WD 
Sbjct: 4   KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGN--- 122
            G E   S    +       + V+ L    +    +   L  I   A ++ + L G    
Sbjct: 64  AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123

Query: 123 --------------NEQCHN------LISSTYKTSCKTGEGVEEMFADIGRQLI 156
                          ++  N      +    +  + +  + + ++   I  + +
Sbjct: 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  121 bits (305), Expect = 3e-35
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSI 59
           M+S K    KVI+ G+ GVGK+SL  RY  D +      K+T+G D   KE  VD D+  
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVA 58

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN 114
            MQ+WDT G ER  S+  ++Y+ A+  +LV+ + NA+SF  +     E + +A     E 
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118

Query: 115 AKIFLCGN----------------NEQCHNLISSTYK-TSCKTGEGVEEMFADIGRQLIL 157
               + GN                 E   +L       TS K    V+  F +I R  + 
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

Query: 158 SNRS 161
            N++
Sbjct: 179 QNQA 182

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  120 bits (304), Expect = 4e-35
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F   ++ ++T+G+D  +K   ++DR++++QLWDT G 
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+  SY + +  A++V+ + N  SFH  S+ + ++ T    +  I L GN      
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                 E+             +TS K G  V+++F  +   L
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  120 bits (303), Expect = 5e-35
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GKSSL  R+  D F     ++ST+G   F++   V+D +++ ++WDT G 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQF--VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+   YY+ A AAI+VF + N ASF    + + E+      N  + L GN      
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                 E              +TS KT   V+E+F +I R+L
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  120 bits (304), Expect = 7e-35
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 24/169 (14%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+  VGKSS   R   + F  +    +TLG+D   K   VD     +QLWDT G 
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  SI  SY++ A+  +L++ +    SF  + + +  I   A E   I L GN     +
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147

Query: 129 LISSTYK---------------------TSCKTGEGVEEMFADIGRQLI 156
             ++  +                     TS K G  + E    + R++ 
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  121 bits (305), Expect = 7e-35
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  S    +T+G+D   K   ++ + +++QLWDT G 
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L GN      
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139

Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIG 174
            + +                ++S K  + V E+F  + +  I       +L  +G G  G
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL-IQEKIDSNKLVGVGNGKEG 198

Query: 175 TDSFKLGGRGS 185
             S   G   S
Sbjct: 199 NISINSGSGNS 209

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  119 bits (302), Expect = 7e-35
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV L G+ GVGKSS+  R+  D+F    +   T+G     K  +  +   +  +WDT G+
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   +  + + GN      
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                     +   S      +TS K    + E+F +I R++ 
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  120 bits (302), Expect = 1e-34
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 19/179 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L GN     +
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGG 172
           L +                   TS      VEE F +I  + I    S+ ++    A  
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE-IYRIVSQKQIADRAAHD 182

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  119 bits (301), Expect = 1e-34
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV L G+ GVGKSS+  R+  D F    +   T+G     K     +   +  +WDT G 
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHF--DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+   YY+ + AA++V+ +    SF+ L + + E+  +  EN  + + GN      
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                 +       S      +TS K    +EE+F  I RQ+
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  119 bits (301), Expect = 2e-34
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+  VGK+ + +R+    F       ST+G+D   K  ++  + +++Q+WDT G 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +IT SYY+ A  AIL + +   +SF  +   + ++  YA  N    L GN      
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 123 -----NEQCHNL-----ISSTYKTSCKTGEGVEEMFADIGRQLI 156
                  +  +L     I    +TS K    VEE F  +  +LI
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  119 bits (300), Expect = 2e-34
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G   VGK+S   RYA D+F  +    ST+G+D   K     D+ I++Q+WDT G 
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +IT++YY+ A   +L++ + N  SF  +     +I TY+ +NA++ L GN      
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                 E    L        ++ S K    V+++F  +   + 
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  119 bits (301), Expect = 3e-34
 Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 25/180 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF-NKEYKVDDRSIQMQLWDTGG 68
           K+ L G+ GVGK++   R     F  +    +T+G  N            I+  +WDT G
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN----- 122
            E+ A +   YY  A  AIL F + +  +   L++ + E        A I +C N     
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130

Query: 123 NEQC------------HNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
           N Q              N     ++ S KT       F  + R      R  L   +   
Sbjct: 131 NRQKISKKLVMEVLKGKNY--EYFEISAKTAHNFGLPFLHLARIFT--GRPDLIFVSNVN 186

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  119 bits (300), Expect = 3e-34
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 19/193 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGKS L  R++ DT+ +     ST+G+D   K  ++D +++++Q+WDT G 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA       L GN      
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGI 173
                 +       +      +TS      VE+ F  + RQ I  + S+  L        
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ-IKESMSQQNLNETTQKKE 186

Query: 174 GTDSFKLGGRGSE 186
              +  L G+   
Sbjct: 187 DKGNVNLKGQSLT 199

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  118 bits (299), Expect = 3e-34
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+ +  R++ D F S+    ST+G+D   +  ++D + I++Q+WDT G 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  + GN      
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                 E+   L         +TS K    VE  F  + R + 
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  118 bits (298), Expect = 3e-34
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGK+ L  R+    F  + +  ST+G+D  NK   VD   +++Q+WDT G 
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAF-LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA  +  + L GN      
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                 E    L         +TS KTG  V+  F  I ++L 
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  119 bits (301), Expect = 3e-34
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS+L  R+  + F   S  KST+G++   +  +++ + I+ Q+WDT G 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L GN     +
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGI 173
           L +   +               TS    E V++ F ++    I    S+ ++    +   
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT-IYQKVSKHQMDLGDSSAN 191

Query: 174 GTDSFKLGGRGS 185
           G  +      G 
Sbjct: 192 GNANGASAPNGP 203

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  118 bits (298), Expect = 3e-34
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 23/180 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++    F   S    T+G++  +K   V  + +++Q+WDT G 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I LCGN      
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129

Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAG 171
                  E     Q + L     +TS  TGE VEE F    R+ IL+     EL     G
Sbjct: 130 DREVTFLEASRFAQENEL--MFLETSALTGENVEEAFVQCARK-ILNKIESGELDPERMG 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  118 bits (298), Expect = 4e-34
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 19/178 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ GE GVGKSSL  R+  DTF       +T+G+D   K   VD    ++ +WDT G 
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQCH 127
           ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY     I   L GN     
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134

Query: 128 NLISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAG 171
           N                    + S KT +GV+  F ++  + I+      E +   +G
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK-IIQTPGLWESENQNSG 191

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  118 bits (298), Expect = 5e-34
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA DTF  +    ST+G+D   K     ++ +++Q+WDT G 
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAF--VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN      
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                 E+   L        ++ S K    V + F  +   + 
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  118 bits (297), Expect = 5e-34
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G+
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L GN      
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
                 ++             +TS      VE  F  I  ++
Sbjct: 149 LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  118 bits (297), Expect = 5e-34
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 23/166 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +VI+ G  GVGK+SL  R+  DTF  +   KST+G+D   K  ++  + I++Q+WDT G 
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
           ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L GN      
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 124 -------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                        +Q   +     + S K    V+E+F  +   ++
Sbjct: 146 DREITRQQGEKFAQQITGM--RFCEASAKDNFNVDEIFLKLVDDIL 189

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  118 bits (298), Expect = 6e-34
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA D+F  +    ST+G+D   K    +D+ I++Q+WDT G+
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN      
Sbjct: 68  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                +E+   L        ++ S K    V++ F  +   + 
Sbjct: 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  118 bits (297), Expect = 7e-34
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  S    ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN      
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                         S      +TS K    VE+ F  +  ++ 
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  117 bits (296), Expect = 7e-34
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 26/169 (15%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS-IQMQLWDTGG 68
           K+++ G+   GK+SL   +A +TF      K T+GLD F +   +     + +Q+WD GG
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK----IFLCGN-- 122
                 +   Y   A+  +LV+ + N  SF  L      +   +E ++    + L GN  
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 123 ----------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                      +     Q +   S  +  S KTG+ V   F  +  +++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSS--HFVSAKTGDSVFLCFQKVAAEIL 172

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  118 bits (297), Expect = 8e-34
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 23/175 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++  + F   S    T+G++  ++   V  +++++Q+WDT G 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +  T A  N  + LCGN      
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144

Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ 166
                  E     Q + L     +TS  TGE VEE F    R  IL+     EL 
Sbjct: 145 EREVTFLEASRFAQENEL--MFLETSALTGENVEEAFLKCART-ILNKIDSGELD 196

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  117 bits (296), Expect = 9e-34
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+A DT+  S    ST+G+D   +  ++D ++I++Q+WDT G 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L GN      
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                         S      +TS K    VE+ F  +  ++ 
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  117 bits (296), Expect = 1e-33
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGK+ L RR+    F       +T+G+D   K  +++   +++Q+WDT G 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  SIT SYY+ A A IL + +    SF  L + L EI  YA       L GN      
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
               + +               TS K  + VE++F D+  +LI
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  116 bits (294), Expect = 2e-33
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE GVGK++L  R+  + F   S  ++T+G++   +   +   +++ Q+WDT G+
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDS--RTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +A     + L GN      
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
                 +               TS      VE  F  + +++ 
Sbjct: 145 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  116 bits (292), Expect = 3e-33
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 23/168 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F++      T+G++   +  +V  + I++Q+WDT G 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L GN      
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134

Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSN 159
                  E     + + L     + S KTGE VE+ F +  ++ I  N
Sbjct: 135 QRDVTYEEAKQFAEENGL--LFLEASAKTGENVEDAFLEAAKK-IYQN 179

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  114 bits (288), Expect = 1e-32
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D + I++Q+WDT G 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L GN     +
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
                 +               TS KT   VEE F +  +++ 
Sbjct: 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  113 bits (285), Expect = 2e-32
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 21/165 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L GE  VGKSS+  R+  + F  + +++ T+G     +   +++ +++ ++WDT G 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDF--AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER AS+   YY+ A+AA++V+ +    SF      + E+   A ++  I L GN      
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 129 LISST------------------YKTSCKTGEGVEEMFADIGRQL 155
                                  ++TS KTGE V ++F  IG ++
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  111 bits (281), Expect = 1e-31
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 22/173 (12%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           M        K+++ G  GVGKS+L  ++    F+S      T+  D++ K   VD    +
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--PTIE-DSYTKICSVDGIPAR 58

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 118
           + + DT G E   ++   Y +     +LVF++++  SF+ + +   +I+     ++  + 
Sbjct: 59  LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118

Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
           L GN             +      +++       S K    V+E F  + R +
Sbjct: 119 LVGNKADLESQRQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  110 bits (278), Expect = 3e-31
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 19/167 (11%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           + E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + D
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIE-DSYRKQVVIDGETCLLDILD 57

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN- 122
           T G E  +++   Y +  E  + VF+++N  SF  + Q+  +I      ++  + L GN 
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117

Query: 123 ---------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                    + Q  +L  S      +TS KT +GVE+ F  + R++ 
Sbjct: 118 SDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  111 bits (280), Expect = 3e-31
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 28/186 (15%)

Query: 1   MASIKVPEQ------KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV 54
           MA+ K   Q      KVI+ G  GVGKS+L  ++ YD F+     + T   D++ K+  +
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVL 57

Query: 55  DDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-- 112
           D   +Q+ + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I+     
Sbjct: 58  DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 117

Query: 113 ENAKIFLCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLI 156
           EN    L GN            E+  N  +  +      TS KT   V+++F D+ R++ 
Sbjct: 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVFFDLMREIR 176

Query: 157 LSNRSR 162
                 
Sbjct: 177 ARKMED 182

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  110 bits (277), Expect = 4e-31
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE GVGKS+L   +       +   +     D + +   VD   + + ++D    
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 70  ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN---- 122
                 +     +  +A ++VFS+ +  SF  + + LL +       +  + L GN    
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 123 -------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
                   E+  +L + T       TS        E+F    RQ+
Sbjct: 122 ARSREVSLEEGRHL-AGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  111 bits (279), Expect = 4e-31
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 30/191 (15%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS----------I 59
           K++  G+ GVGK++   RY  + F       +T+G+D   K    + +           +
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 117
            +QLWDT G ER  S+T+++++ A   +L+F L +  SF  +   + ++   A  EN  I
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144

Query: 118 FLCGN-----------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
            L GN             Q   L        ++TS  TG+ VE+    +    I+    +
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL-IMKRMEQ 203

Query: 163 LELQTMGAGGI 173
              +T     +
Sbjct: 204 CVEKTQIPDTV 214

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  110 bits (278), Expect = 5e-31
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V++ G  GVGKSSL  R+   TF  +     T+  D + +    D     +Q+ DT G 
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIE-DTYRQVISCDKSVCTLQITDTTGS 66

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGN---- 122
            +  ++         A ILVFS+ +  S   L    + +++I    E+  + L GN    
Sbjct: 67  HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126

Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
                   +   + +  +K     TS K    V+E+F ++       N S 
Sbjct: 127 TQREVDTREAQAV-AQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSL 176

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  116 bits (292), Expect = 5e-31
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 28/178 (15%)

Query: 2   ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY--------K 53
           A + + E KV L G+   GK+SL ++   +TF        T GL+   K+          
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF--DPKESQTHGLNVVTKQAPNIKGLEND 92

Query: 54  VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
            + +      WD GG E + +    +   +   +L+    ++ +       L  I  Y  
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKYGG 149

Query: 114 NAKIFLCGN---------------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
            + + +  N               NE+   + +  ++ SCK G+GVE +   +   ++
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  110 bits (277), Expect = 6e-31
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G  GVGKS+L  ++ YD F+     + T   D++ K+  +D   +Q+ + DT G 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGN----- 122
           E  A+I  +Y++  E  + VFS+    SF   +    +I+     EN    L GN     
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136

Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRS 161
                  E+  N  +  +      TS KT   V+++F D+ R++      
Sbjct: 137 DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  110 bits (277), Expect = 7e-31
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE GVGKS+L   +      S+   +     D + +   VD   + + ++D    
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82

Query: 70  ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN---- 122
                 +     +  +A ++VFS+ +  SF  + + LL +       +  + L GN    
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142

Query: 123 -------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
                   E+  +L + T       TS        E+F    RQ+ L     
Sbjct: 143 ARSREVSLEEGRHL-AGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  109 bits (274), Expect = 9e-31
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 22/167 (13%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           +   KVI+ G  GVGKS+L  ++ YD F+     + T   D++ K+  +D   +Q+ + D
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEEVQIDILD 58

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN- 122
           T G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    L GN 
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 123 ----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQ 154
                      E+  N  +  +      TS KT   V+++F D+ R+
Sbjct: 119 SDLEDKRQVSVEEAKNR-ADQWNVNYVETSAKTRANVDKVFFDLMRE 164

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  109 bits (274), Expect = 1e-30
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 23/173 (13%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           + +V + G  GVGKSSL  R+   TF  S     T+  D + +    D     +Q+ DT 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVE-DTYRQVISCDKSICTLQITDTT 59

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---IFLCGN-- 122
           G  +  ++         A ILV+S+ +  S   L     +I     + +   I L GN  
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 123 ---------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRS 161
                    + +   L + T+K     TS K    V+E+F ++         S
Sbjct: 120 DESPSREVQSSEAEAL-ARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  109 bits (275), Expect = 1e-30
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 29/174 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD----------DRSI 59
           K +  G+ GVGK+S+  +Y    F S     +T+G+D   K                + I
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRI 70

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 117
            +QLWDT G+ER  S+T+++++ A   +L+F L N  SF  +   + ++  +A  EN  I
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130

Query: 118 FLCGN-----------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
            LCGN            E+   L        ++TS   G  +      +   ++
Sbjct: 131 VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  108 bits (273), Expect = 2e-30
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 7   PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
            E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDT 76

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN-- 122
            G E  +++   Y +  E  + VF+++N+ SF  ++ +  +I      ++  + L GN  
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136

Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSRL 163
                    +Q H L + +Y      TS KT +GVE+ F  + R++      +L
Sbjct: 137 DLPTRTVDTKQAHEL-AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  108 bits (271), Expect = 3e-30
 Identities = 33/183 (18%), Positives = 75/183 (40%), Gaps = 31/183 (16%)

Query: 2   ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM 61
           +   +PE ++ + G+   GKSSL  R+   ++      + T   + + KE  VD ++  +
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY---QVLEKTES-EQYKKEMLVDGQTHLV 56

Query: 62  QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----AENAKI 117
            + +  G          +  +A+A I VFSL++  SF  +S+   ++ +          +
Sbjct: 57  LIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111

Query: 118 FLCGN-------------NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSN 159
            L G              + +   L +       Y+T    G  V+ +F ++ ++++   
Sbjct: 112 ALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171

Query: 160 RSR 162
           + +
Sbjct: 172 KQQ 174

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  108 bits (272), Expect = 5e-30
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV++ G   VGK+SL  ++    F        T+  + ++K   +      + L DT G 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVE-NTYSKIVTLGKDEFHLHLVDTAGQ 82

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN----- 122
           +  + +  S+       +LV+S+ +  SF V+     ++          + L GN     
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142

Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
                   +   L + ++      +S +  +  + +F  + +++
Sbjct: 143 PEREVQAVEGKKL-AESWGATFMESSARENQLTQGIFTKVIQEI 185

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  107 bits (270), Expect = 5e-30
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 30/180 (16%)

Query: 3   SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQ 62
             + PE KV + G    GKS+L  RY   T++      S  G   F KE  VD +S  + 
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE---SPEG-GRFKKEIVVDGQSYLLL 70

Query: 63  LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLC 120
           + D GG   +      +  + +A + VFSL++  SF  +  + L + ++       + L 
Sbjct: 71  IRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125

Query: 121 GN-------------NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
           G              + +   L +       Y+T    G  VE +F D+ ++ +++ R +
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK-VVALRKK 184

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  107 bits (270), Expect = 6e-30
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 23/173 (13%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           + S  +P  K+++ G+ GVGKS+L  ++    F+       T+  D++ K  ++D++   
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIE-DSYLKHTEIDNQWAI 67

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 118
           + + DT G E  +++   Y +  +  ++V+S+ + ASF  + +    I+     E+  + 
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127

Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGE-GVEEMFADIGRQ 154
           L  N            +Q   + ++ Y      TS K     V++ F D+ R 
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEM-ATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  107 bits (269), Expect = 6e-30
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 22/166 (13%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KV++ G  GVGKS+L  ++   TFI       T+  D + KE +VD     +++ DT 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           G E+ AS+   Y K  +  ILV+SL N  SF  +     +I  V   E   + L GN   
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
                   + +   L +  +      TS K+   V+E+FA+I RQ+
Sbjct: 120 LESEREVSSSEGRAL-AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  106 bits (267), Expect = 2e-29
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+++ G  GVGKS+L  +   + F+       T+  D++ K+  +D  +  + + DT 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTA 60

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN--- 122
           G E  +++   Y +  E  + VF+++N  SF  +  +  +I      E+  + L GN   
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120

Query: 123 -------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
                   +Q  +L  S      +TS KT +GV++ F  + R++ 
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  106 bits (267), Expect = 2e-29
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 24/173 (13%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           M   K   +K+ + G   VGKSSL  ++    F+ S     T+  + F K   V+ +   
Sbjct: 1   MPQSK--SRKIAILGYRSVGKSSLTIQFVEGQFVDSYD--PTIE-NTFTKLITVNGQEYH 55

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 118
           +QL DT G +  +    +Y       ILV+S+ +  SF V+     ++  +       I 
Sbjct: 56  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115

Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
           L GN            E+   L + ++      +S K  +   ++F  I  + 
Sbjct: 116 LVGNKKDLHMERVISYEEGKAL-AESWNAAFLESSAKENQTAVDVFRRIILEA 167

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  104 bits (262), Expect = 6e-29
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 21/167 (12%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           + E K+++ G  GVGKS+L  ++    F+       T+  D++ K+ +VD +   +++ D
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIE-DSYRKQVEVDCQQCMLEILD 57

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN- 122
           T G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   E+  + L GN 
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

Query: 123 ----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQ 154
                      EQ  NL           +S K+   V E+F D+ RQ
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  104 bits (262), Expect = 9e-29
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+I+ G+  VGK+ L  R+    F   +  ++T+G+D   +   +D   I++QLWDT G 
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 79

Query: 70  ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN---- 122
           ER   S+   YY+   A + V+ + N ASFH L   + E   +    +    L GN    
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139

Query: 123 --------NE-----QCHNLISSTYKTSCKT---GEGVEEMFADIGRQLILSN 159
                   +        H++    ++TS K     + VE +F  +  + + S+
Sbjct: 140 RSAIQVPTDLAQKFADTHSM--PLFETSAKNPNDNDHVEAIFMTLAHK-LKSH 189

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  103 bits (259), Expect = 2e-28
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 23/164 (14%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G  GVGKS+L R +         +     G   +++   VD     + ++D    
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEA--EAAG-HTYDRSIVVDGEEASLMVYDIWEQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGN----- 122
           +    +        +A ++V+S+ +  SF   S+  +++      ++  I L GN     
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
                  ++     +  +      TS      V+ +F  + RQ+
Sbjct: 120 RSREVSVDEGRAC-AVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  103 bits (259), Expect = 2e-28
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 24/171 (14%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V+L G+ GVGK+SL   +A             LG D + +   VD     + + DT   
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDL---HEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 70  ERVASITS--SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
           E++    S  S  +   A ++V+S+ +  SF   S+  +++     A++  I L GN   
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNR 160
                    E+     +  +      TS      V E+F  + RQL L  R
Sbjct: 123 LARCREVSVEEGRAC-AVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  101 bits (254), Expect = 2e-27
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 27/172 (15%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW--DTG 67
           KV + GE  VGKS+L   +             T G++       + D ++ ++L+  DT 
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA----KIFLCGN- 122
           G +      S Y+     AILVF + +  SF         + +   +     +  L  N 
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141

Query: 123 ------------NE-----QCHNLISSTYKTSCK-TGEGVEEMFADIGRQLI 156
                       +        + L    +  S    G+  +  F  I     
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTL--DFFDVSANPPGKDADAPFLSIATTFY 191

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 96.1 bits (240), Expect = 2e-25
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 24/170 (14%)

Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K  E K+ + G  GVGKS+L  R+    FI       TL    +  +  +DD  + M++ 
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLE-STYRHQATIDDEVVSMEIL 81

Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
           DT G E        + ++ E  +LV+ + +  SF  +      +  +   +N  + L GN
Sbjct: 82  DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140

Query: 123 -----------NEQCHNLISSTYK-----TSCKTGEG-VEEMFADIGRQL 155
                       E+   L ++         S  TGEG + E+F ++ R++
Sbjct: 141 KADLDHSRQVSTEEGEKL-ATELACAFYECSACTGEGNITEIFYELCREV 189

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 95.8 bits (239), Expect = 3e-25
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 23/173 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
           +V+L GE GVGKS+L   +A       S     LG D + +   VD  S   I + +W+ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN-- 122
            G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN  
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 123 ---------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
                      +             +TS      V+E+F  I RQ+ L   S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 95.3 bits (237), Expect = 5e-25
 Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 58/200 (29%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSI---------- 59
           K +L GE  VGKSS+  R   DTF  ++   +T+G         ++D +I          
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENT--NTTIGASFCTYVVNLNDINIKNNSNNEKNN 66

Query: 60  ---------------------------QMQLWDTGGMERVASITSSYYKFAEAAILVFSL 92
                                      +  +WDT G ER ASI   YY+ A  AI+VF +
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126

Query: 93  DNAASFHVLSQHLLEIVTYAENAKIFLCGN-----------NE-----QCHNLISSTYKT 136
            N+ +       + ++     N  I L  N            E     Q +NL+    +T
Sbjct: 127 SNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLF--IQT 183

Query: 137 SCKTGEGVEEMFADIGRQLI 156
           S KTG  ++ +F  +  ++ 
Sbjct: 184 SAKTGTNIKNIFYMLAEEIY 203

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E  + + G  G GKS+L  ++    FIS       L  D ++ E  VD + + +++ DT 
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEY--DPNLE-DTYSSEETVDHQPVHLRVMDTA 77

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK----IFLCGN- 122
            ++   +    Y  +A A ++V+S+D+  SF   S +L  +  +A+  +      L GN 
Sbjct: 78  DLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 123 ----------NEQCHNLISST----YKTSCKT-GEGVEEMFADIGRQ 154
                       +   L        ++ S     E V+ +F +  R+
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 92.4 bits (230), Expect = 9e-24
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 29/176 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYA--YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM---QLW 64
           +V+L GE GVGKS+L   +A  +D+  S       LG D + +   VD  S  +    +W
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCE---VLGEDTYERTLMVDGESATIILLDMW 95

Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
           +  G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I L GN
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153

Query: 123 -----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
                        +     +  +      TS      V+E+F  I RQ+ L   S+
Sbjct: 154 KSDLVRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 90.5 bits (225), Expect = 3e-23
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+  VGK+ L   ++     ++     T+  +NF+   K  +    + LWDT G 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYV--PTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN----NE 124
           E    +    Y  ++  +L F+++N  SF  + ++   EI  Y + AK  L G      +
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141

Query: 125 QCHNLISS-------------TY-KTSCKTGEGVEEMF 148
              + ++               Y + S     G+ E+F
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 87.4 bits (217), Expect = 3e-22
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 32/175 (18%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           M++ +    K +  G+  VGK+ L   Y  +TF +      T+  DNF+    V+  ++ 
Sbjct: 3   MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYV--PTVF-DNFSANVVVNGATVN 57

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y+ A+  IL FSL + AS+  V  + + E+  YA    I L
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117

Query: 120 CGN---------------------NEQCHNLISS----TY-KTSCKTGEGVEEMF 148
            G                        Q   L        Y + S K+ E V+ +F
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 32/168 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G       
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
                    E+    I+                 + S  T  G++ +F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 85.1 bits (211), Expect = 3e-21
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F  +     T+  +N+   +++D + I++ LWDT G 
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVF-ENYTASFEIDTQRIELSLWDTSGS 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 119

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+   GK+++ +  A D +  +         +N+    + +++ +++ LWDT G 
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYV---PTVFENYTACLETEEQRVELSLWDTSGS 85

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
               ++    Y  ++A +L F +    +    L +   EI+ Y  + ++ L G 
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 139

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 84.8 bits (210), Expect = 7e-21
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 32/168 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ G GK+SL   +A   F  S +   T+  + +    +V  + + + +WDT G 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYT--PTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
           +    +   +Y  A   +L F + +  SF ++ ++   E+  + +   I + G       
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
                          ++                 + S +  + V  +F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 84.4 bits (209), Expect = 8e-21
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           MA+I+    K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + ++
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVF-ENYIADIEVDGKQVE 74

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
           + LWDT G E    +    Y   +  ++ FS+D+  S   +  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134

Query: 120 CGN 122
            GN
Sbjct: 135 VGN 137

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 84.4 bits (209), Expect = 9e-21
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 32/168 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK+ L   ++ D F        T+  +N+  + +VD + +++ LWDT G 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVF-ENYVADIEVDGKQVELALWDTAGQ 83

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
           E    +    Y   +  ++ FS+D+  S   +  + + E+  +  N  I L  N      
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143

Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
                          + +                + S KT EGV E+F
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 81.7 bits (202), Expect = 7e-20
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F        T+  DN++    VD + + + LWDT G 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYI--PTVF-DNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
           E    +    Y   +  ++ FSL + ASF  V ++   E+  +  N  I L G 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 81.7 bits (202), Expect = 8e-20
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F  +     T+  +N+   +++D + I++ LWDT G 
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 81.7 bits (202), Expect = 8e-20
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +L G+  VGK+SL   Y  + + +      T   DNF+    VD R +++QL DT G 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYI--PTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
           +    +    Y   +  +L FS+ + +SF  V  + + EI  +   A I L G       
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138

Query: 123 -----------------NEQCHNLIS----STY-KTSCKTGEGVEEMF 148
                             E    L      ++Y + S  T + ++E+F
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 81.4 bits (201), Expect = 9e-20
 Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 32/168 (19%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   YA D F        T+  D++     V  +   + L+DT G 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYV--PTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
           E    +    Y   +  ++ FS+ N ASF  V  + + E+  YA N    L G       
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

Query: 123 -----------------NEQCHNLI-----SSTYKTSCKTGEGVEEMF 148
                             EQ   L          + S  T +G++ +F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 79.3 bits (196), Expect = 7e-19
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K +  G+  VGK+ +   Y  + F +      T+  DNF+    VD + + + LWDT G 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
           E  + +    Y+ A+  +L FSL + AS+  VL + + E+  +A N  I L G       
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127

Query: 123 ----NEQCHNLISS-------------TYK-TSCKTGEGVEEMF 148
                    N+I+S              Y   S KT + V+ +F
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           +        K ++ G+  VGK+ L   Y  + F            DN++    VD + + 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVN 204

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
           + LWDT G+E    +    Y   +  ++ FSL + ASFH V ++   E+  +  N  I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264

Query: 120 CGN 122
            G 
Sbjct: 265 VGT 267

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDT 66
           + +++L G    GKSS+ +   +    + +   +ST       K+   +   +  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFVNFQIWDF 76

Query: 67  GGMERVASITS---SYYKFAEAAILVF--SLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
            G       T      ++   A I V     D   +   L   + +      +    +  
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 122 N 122
           +
Sbjct: 137 H 137

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDT 66
             K++L G  G GKSS+      +     + R  +T+        +     ++ + LWD 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID---VEHSHLRFLGNMTLNLWDC 59

Query: 67  GGMER-----VASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKIF 118
           GG +              ++  +  I VF +++        + ++ L ++  Y+ +AKIF
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 119 LCGN 122
           +  +
Sbjct: 120 VLLH 123

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 19/126 (15%)

Query: 1   MASI----KVPEQKVILCGEYGVGKSSLFRR--------YAYDTFISSSSRKSTLGLDNF 48
           M++I    +    K++  G    GK++  +            +    ++  + TL  D  
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62

Query: 49  NKEYK-VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF------SLDNAASFHVL 101
             +   V     +  L+   G     +      +  +  + V          NA S   +
Sbjct: 63  PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM 122

Query: 102 SQHLLE 107
            ++L E
Sbjct: 123 RENLAE 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 48/153 (31%)

Query: 7   PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLD----NFNKEYKVDDRSIQMQ 62
           P + V++ G  G GK+ +    A D    S   +  +       N       +     +Q
Sbjct: 149 PAKNVLIDGVLGSGKTWV----ALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 63  -LW---DTGGMERVASITSSYYKFAEA---------------AILVFSLDNAASFHVLSQ 103
            L    D     R    ++   +                    +LV  L N         
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN--------- 252

Query: 104 HLLEIVTYAENAKIFLCGNNEQCHNLISSTYKT 136
                V  A+    F    N  C  L+++ +K 
Sbjct: 253 -----VQNAKAWNAF----NLSCKILLTTRFKQ 276

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++++ G  G GK+++  R      +++     T+G   FN E  +  +++++ +WD G
Sbjct: 18  ELRILILGLDGAGKTTILYRLQIGEVVTTKP---TIG---FNVE-TLSYKNLKLNVWDLG 70

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNN-- 123
           G   +      YY    A I V    +       S+ L  ++   E     L    N   
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 124 ----------------EQCHNLISSTYKTSCKTGEGVEEMF 148
                            +  +   S   +S   GEG+ E  
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E ++++ G  G GK+++  R      +++     T+G   FN E  V  ++++ Q+WD G
Sbjct: 7  EMRILILGLDGAGKTTILYRLQVGEVVTTIP---TIG---FNVE-TVTYKNLKFQVWDLG 59

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G+  +      YY   +A I V
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYV 81

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE-YKV-DDRSIQMQ 62
           K  ++ V+  G    GK+ LF R     +  + +   ++     +   YKV ++R   + 
Sbjct: 4   KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---SIT---DSSAIYKVNNNRGNSLT 57

Query: 63  LWDTGGMERV-ASITSSYYKFAEAAILVF-SLDNAASFHVLSQHLLEIVTYAENAK 116
           L D  G E +   +   +   A A + V  S         +++ L +++  +   K
Sbjct: 58  LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 113

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           + ++++ G    GK+++  +      +++     T+G   FN E  V+ ++I   +WD G
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG---FNVE-TVEYKNICFTVWDVG 81

Query: 68  GMERVASITSSYYKFAEAAILV 89
           G +++  +   Y++  +  I V
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFV 103

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E KVI+ G    GK+++  +++ +  + +S    T+G    N E ++   + +  +WD G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVE-EIVINNTRFLMWDIG 68

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G E + S  ++YY   E  I+V
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVV 90

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 82/221 (37%)

Query: 15  GEYGVGKSSL---FRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD--------------- 56
           G+ G+GKS L   F R + D F    +  S L   +F      +D               
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHT--SVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92

Query: 57  RSIQMQLW-------DTGGMERVASITSSYYK---------------------------- 81
              +M +        D       ++    Y K                            
Sbjct: 93  VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE 152

Query: 82  ---------FAEAAILVF--SLDNAASFHVLSQHLLEIVTYAENAK--IFLCGN-----N 123
                      +  +L    S     +F    + +  +       K  I +         
Sbjct: 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212

Query: 124 EQC----HNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
           E+     H    S        TS ++   V+  F+ + + +
Sbjct: 213 ERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E ++++ G    GK+++ +++  +   + S    TLG   FN +  ++ R  ++ +WD G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISP---TLG---FNIK-TLEHRGFKLNIWDVG 70

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G + + S   +Y++  +  I V
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWV 92

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 27/159 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           ++++ G    GK+++  +      +++     T+G   FN E  V+ ++I   +WD GG 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG---FNVE-TVEYKNISFTVWDVGGQ 54

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNN---- 123
           +++  +   Y++  +  I V   ++    +   + L+ ++   E     L    N     
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 124 --------------EQCHNLISSTYKTSCKTGEGVEEMF 148
                             +       T   +G+G+ E  
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          + +V++ G    GK+S+  R      +++     T+G    N E  +  ++I  ++WD G
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVP---TVG---VNLE-TLQYKNISFEVWDLG 74

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G   V      Y+   +A I V
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYV 96

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E +++L G    GK++L ++ A +     +    T G   FN +  V  +  ++ +WD G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITP---TQG---FNIK-SVQSQGFKLNVWDIG 68

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G  ++     SY++  +  I V
Sbjct: 69 GQRKIRPYWRSYFENTDILIYV 90

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 8  EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
          E KVI+ G    GK+++  +++ +  + +S    T+G    N E ++   + +  +WD G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVE-EIVINNTRFLMWDIG 73

Query: 68 GMERVASITSSYYKFAEAAILV 89
          G E + S  ++YY   E  I+V
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVV 95

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 26/159 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++ L G    GK++     A   F        T+G   FN   K+   ++ ++LWD G
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVG---FNMR-KITKGNVTIKLWDIG 75

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNNEQ 125
           G  R  S+   Y +   A + +    +          L  ++   +   I +   GN   
Sbjct: 76  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 126 CHNLISST------------------YKTSCKTGEGVEE 146
               +                     Y  SCK  + ++ 
Sbjct: 136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.98
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.98
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.98
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.98
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.98
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.98
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.83
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.83
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.82
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.8
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.8
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.79
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.78
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.77
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.77
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.76
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.75
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.73
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.71
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.71
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.7
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.69
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.69
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.68
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.66
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.66
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.65
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.65
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.61
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.57
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.56
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.55
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.5
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.48
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.48
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.43
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.3
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.21
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.16
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.08
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.97
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.76
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.75
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.73
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.71
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.59
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.58
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.54
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.25
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.24
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.2
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.11
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.02
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.67
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.63
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.62
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.59
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.52
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.52
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.49
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.48
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.44
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.43
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.4
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.4
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.39
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.39
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.38
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.37
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.36
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.36
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.36
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.36
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.35
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.34
1via_A	175	Shikimate kinase; structural genomics, transferase	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.33
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.31
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.31
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.3
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.29
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.29
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.29
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.28
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.27
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.27
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.26
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.26
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.25
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.24
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.23
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.23
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.23
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.22
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.22
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.2
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.2
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.2
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.18
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.18
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.15
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.15
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.15
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.13
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.13
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.12
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.11
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.11
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.1
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.1
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.1
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.09
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.09
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.09
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.09
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.09
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.09
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.09
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.09
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.07
1g6h_A	257	High-affinity branched-chain amino acid transport	97.07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.05
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.05
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.04
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.04
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.04
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.03
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.03
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.03
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.02
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.02
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.02
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.02
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.02
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.02
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.01
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.01
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.01
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.01
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.99
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.99
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.99
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.94
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.94
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.94
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.93
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.93
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.92
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.92
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.91
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.91
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.9
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.9
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.88
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.87
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.86
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.86
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.86
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.86
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.85
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.83
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.83
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.82
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.82
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.82
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.82
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.82
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.8
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.8
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.79
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.79
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.79
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.78
3bos_A	242	Putative DNA replication factor; P-loop containing	96.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.76
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.75
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.74
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.73
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.72
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.72
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.72
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.71
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.71
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.7
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.7
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.69
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.68
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.68
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.65
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.64
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.64
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.64
2og2_A	359	Putative signal recognition particle receptor; nuc	96.63
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.63
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.62
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.62
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.59
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.58
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.57
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.56
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.56
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.56
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.56
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.55
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.54
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.54
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.53
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.53
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.53
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.53
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.53
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.5
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.5
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.48
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.48
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.46
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.42
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.42
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.41
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.4
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.4
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.4
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.37
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.35
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.31
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.31
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.3
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.29
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.27
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.24
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.24
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.23
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.22
3co5_A	143	Putative two-component system transcriptional RES	96.2
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.2
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.18
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.17
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.16
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.15
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.14
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.14
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.1
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.08
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.06
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.06
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.05
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.01
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.01
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.99
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.99
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.97
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.96
2qgz_A	308	Helicase loader, putative primosome component; str	95.96
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.96
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.95
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.94
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.94
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.94
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.93
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.91
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.9
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.9
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.89
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.89
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.88
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.88

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.8e-38  Score=231.43  Aligned_cols=153  Identities=31%  Similarity=0.541  Sum_probs=127.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+|+|++|||||||+++|..+.|...+  .+|++.++.......++..+.+.+|||+|+++|..++..+++.+++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~--~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCc--CCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            56799999999999999999999999997665  7889989988888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++|+.+..|+..+.... +++|++|||||+|+...               ..+|++|||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            999999999999999999999988765 78999999999997542               23899999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      .|++.+.+...
T Consensus       169 ~i~~~i~~~~~  179 (216)
T 4dkx_A          169 RVAAALPGMES  179 (216)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHhhhc
Confidence            99998875543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=198.64  Aligned_cols=162  Identities=32%  Similarity=0.479  Sum_probs=137.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |+....+.+||+++|++|||||||+++|.+..+....  .++.+.+.....+..++..+.+.+||+||++.+...+..++
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   79 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY   79 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGG
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHh
Confidence            4555567899999999999999999999988876554  66666677778888888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~  145 (189)
                      +.+|++++|||++++++++.+..|+..+....+++|+++|+||+|+...               ..+++++||++|.|++
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           80 RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE  159 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            9999999999999999999999999999888788999999999996532               2389999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q psy17231        146 EMFADIGRQLILSNRSRLE  164 (189)
Q Consensus       146 ~~~~~i~~~i~~~~~~~~~  164 (189)
                      ++|+++.+.+.+...+..+
T Consensus       160 ~l~~~l~~~~~~~~~~~~~  178 (181)
T 3tw8_B          160 EMFNCITELVLRAKKDNLA  178 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999999999877665443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=8.7e-32  Score=194.83  Aligned_cols=153  Identities=36%  Similarity=0.515  Sum_probs=135.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            34689999999999999999999998886655  5666667877888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999998875 67999999999997432               23899999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      ++.+.+.+...
T Consensus       172 ~l~~~i~~~~~  182 (196)
T 3tkl_A          172 TMAAEIKKRMG  182 (196)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhc
Confidence            99999987644

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.9e-33  Score=198.70  Aligned_cols=159  Identities=30%  Similarity=0.451  Sum_probs=109.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |+....+.+||+++|++|||||||+++|.+..+...+  .++++.++....+.+++..+.+.+||+||++++...+..++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   78 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY   78 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHH
Confidence            5554566899999999999999999999988775443  67777777777788888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i  144 (189)
                      +.+|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|+
T Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (183)
T 2fu5_C           79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV  158 (183)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred             hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            99999999999999999999999999988864 67999999999997531               237899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy17231        145 EEMFADIGRQLILSNRS  161 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~~  161 (189)
                      +++|+++.+.+.+...+
T Consensus       159 ~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          159 ENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999998766443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=6.5e-32  Score=193.96  Aligned_cols=158  Identities=31%  Similarity=0.490  Sum_probs=136.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |+....+.+||+++|++|||||||+++|.+..+...+  .++.+.++....+..++..+.+.+||+||++++...+..++
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   80 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY   80 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTS
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHH
Confidence            4444466799999999999999999999998886555  66677777777888888888999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i  144 (189)
                      +.+|++++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|+
T Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  160 (186)
T 2bme_A           81 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV  160 (186)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            99999999999999999999999999887765 68999999999997532               237899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy17231        145 EEMFADIGRQLILSNR  160 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~  160 (189)
                      +++|+++.+.+.+...
T Consensus       161 ~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          161 EEAFVQCARKILNKIE  176 (186)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999886543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.1e-31  Score=191.53  Aligned_cols=157  Identities=22%  Similarity=0.364  Sum_probs=132.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |.....+.++|+++|++|||||||+++|.+..+....  .+|.+..+. ..+..++..+.+.+||+||++++..++..++
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~   78 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--DPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYM   78 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--CTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc--CCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence            5556677899999999999999999999998776554  566654444 5667788788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~  143 (189)
                      +.++++++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|
T Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (181)
T 2fn4_A           79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN  158 (181)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999999999999999999999885543  58999999999997542               23789999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy17231        144 VEEMFADIGRQLILSNR  160 (189)
Q Consensus       144 i~~~~~~i~~~i~~~~~  160 (189)
                      ++++|+++.+.+.+...
T Consensus       159 v~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          159 VDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-32  Score=197.16  Aligned_cols=152  Identities=35%  Similarity=0.547  Sum_probs=134.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.+..+....  .+|++.++....+.+++..+.+.+||+||++++..++..+++.++++
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            4689999999999999999999998886554  67777788888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988775 57999999999997532               237899999999999999999


Q ss_pred             HHHHHHHhhh
Q psy17231        151 IGRQLILSNR  160 (189)
Q Consensus       151 i~~~i~~~~~  160 (189)
                      +.+.+.+...
T Consensus       183 l~~~i~~~~~  192 (201)
T 2ew1_A          183 LACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.5e-32  Score=197.17  Aligned_cols=161  Identities=35%  Similarity=0.507  Sum_probs=135.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |++...+.++|+++|++|||||||+++|.+..+...+  .++++.++....+..++..+.+.+||+||++++...+..++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   78 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY   78 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence            6777788999999999999999999999998876554  66777788777788888788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc---------------cCCceEEeeccC
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN---------------LISSTYKTSCKT  140 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~  140 (189)
                      +.+|++++|||++++.+++.+..|+..+....     .+.|+++|+||+|+..               ...+++++||++
T Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (207)
T 1vg8_A           79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE  158 (207)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred             hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999999999887654     4789999999999742               123789999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRSRL  163 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~~~  163 (189)
                      |.|++++|+++.+.+.+......
T Consensus       159 g~gi~~l~~~l~~~~~~~~~~~~  181 (207)
T 1vg8_A          159 AINVEQAFQTIARNALKQETEVE  181 (207)
T ss_dssp             TBSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccccc
Confidence            99999999999999987765443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.8e-31  Score=194.94  Aligned_cols=160  Identities=33%  Similarity=0.478  Sum_probs=138.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |+......+||+++|++|||||||+++|.+..+...+  .++++.++....+..++..+.+.+||+||++++...+..++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   78 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY   78 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGG
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhc
Confidence            5544456799999999999999999999998886554  66777777777888888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i  144 (189)
                      +.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|+
T Consensus        79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  158 (206)
T 2bcg_Y           79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV  158 (206)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred             cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            99999999999999999999999999988775 67999999999997531               237999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy17231        145 EEMFADIGRQLILSNRSR  162 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~~~~  162 (189)
                      +++|+++.+.+.+.....
T Consensus       159 ~~l~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          159 EDAFLTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999998776543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.2e-31  Score=190.83  Aligned_cols=150  Identities=23%  Similarity=0.369  Sum_probs=130.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+....  .++.+... ......++..+.+.+||+||++++...+..+++.+|
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            466899999999999999999999988876555  55655444 666778888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc-CCCCHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK-TGEGVEE  146 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~-~~~~i~~  146 (189)
                      ++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+++++||+ +|.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            9999999999999999999999887643  68999999999997431               2389999999 9999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        147 MFADIGRQLIL  157 (189)
Q Consensus       147 ~~~~i~~~i~~  157 (189)
                      +|+++.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.2e-31  Score=192.44  Aligned_cols=153  Identities=30%  Similarity=0.437  Sum_probs=131.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            355789999999999999999999998876554  566666777777888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++++++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988765 68999999999997531               2378999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy17231        149 ADIGRQLILSN  159 (189)
Q Consensus       149 ~~i~~~i~~~~  159 (189)
                      +++.+.+.+..
T Consensus       176 ~~l~~~i~~~~  186 (191)
T 2a5j_A          176 INTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.5e-31  Score=188.90  Aligned_cols=150  Identities=35%  Similarity=0.500  Sum_probs=131.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      +.++.+||+++|++|||||||+++|.++.+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   79 (170)
T 1r2q_A            2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA   79 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC
Confidence            3467899999999999999999999998876554  56666677777788888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      |++++|||++++++++.+..|+..+.... ++.|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  159 (170)
T 1r2q_A           80 QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988775 68999999999997532               237899999999999999


Q ss_pred             HHHHHHHH
Q psy17231        148 FADIGRQL  155 (189)
Q Consensus       148 ~~~i~~~i  155 (189)
                      |+++.+.+
T Consensus       160 ~~~i~~~~  167 (170)
T 1r2q_A          160 FMAIAKKL  167 (170)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHHH
Confidence            99998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-31  Score=189.13  Aligned_cols=148  Identities=31%  Similarity=0.546  Sum_probs=131.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   78 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQA   78 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcE
Confidence            46799999999999999999999998876554  6677777777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...                  ..+++++||++|.|+++
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (170)
T 1ek0_A           79 ALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND  158 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999988875 68999999999997532                  23789999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +|+++.+.+
T Consensus       159 l~~~l~~~i  167 (170)
T 1ek0_A          159 VFLGIGEKI  167 (170)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHHH
Confidence            999998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=195.25  Aligned_cols=153  Identities=31%  Similarity=0.523  Sum_probs=128.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|++.++....+.+++..+.+.+||+||++++..++..+++.+|+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            34689999999999999999999998876544  6777777777788888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CC-ceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------IS-STYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~-~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|+.+..|+..+.... .++|+++|+||+|+...               .. +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999998875 68999999999997541               22 78999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy17231        149 ADIGRQLILSNR  160 (189)
Q Consensus       149 ~~i~~~i~~~~~  160 (189)
                      +++.+.+.+...
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=7e-32  Score=192.82  Aligned_cols=157  Identities=35%  Similarity=0.531  Sum_probs=119.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHH
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSY   79 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~   79 (189)
                      |+....+.++|+++|++|||||||+++|.+..+...+  .++.+.++....+..+ +....+.+||+||++++...+..+
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   78 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF   78 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCccc--CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence            6666778899999999999999999999998876554  5666667777777666 556789999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc-----------------cCCceEEee
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN-----------------LISSTYKTS  137 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~-----------------~~~~~~~~S  137 (189)
                      ++.+|++++|||++++.+++.+..|+..+....     .++|+++|+||+|+..                 ...+++++|
T Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S  158 (182)
T 1ky3_A           79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTS  158 (182)
T ss_dssp             STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEB
T ss_pred             hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence            999999999999999999999999999887753     5799999999999731                 123799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhh
Q psy17231        138 CKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      |++|.|++++|+++.+.+.+.+
T Consensus       159 a~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          159 AKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.3e-31  Score=187.78  Aligned_cols=150  Identities=30%  Similarity=0.476  Sum_probs=132.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||||+++|.+..+...+  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   80 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQA   80 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCE
Confidence            46799999999999999999999998876544  6677777777888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +++|||++++++++.+..|+..+.....+.|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           81 CVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999997542               237899999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=3.4e-31  Score=189.33  Aligned_cols=152  Identities=35%  Similarity=0.534  Sum_probs=131.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|+|||||+++|....+....  .++++.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            456799999999999999999999998876554  566676777777888888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++.+++.+..|+..+.... +++|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999999999988875 68999999999997421               2378999999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++.+.+.+.
T Consensus       167 ~~l~~~~~~~  176 (181)
T 2efe_B          167 YEIARRLPRV  176 (181)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHhc
Confidence            9998877543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-31  Score=192.70  Aligned_cols=155  Identities=30%  Similarity=0.471  Sum_probs=135.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ....+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            345799999999999999999999998876554  566677777777888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++++++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            9999999999999999999999988765 68999999999997532               2378999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy17231        149 ADIGRQLILSNRS  161 (189)
Q Consensus       149 ~~i~~~i~~~~~~  161 (189)
                      +++.+.+.+...+
T Consensus       163 ~~l~~~i~~~~~~  175 (203)
T 1zbd_A          163 ERLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-31  Score=189.95  Aligned_cols=152  Identities=30%  Similarity=0.472  Sum_probs=133.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .++.+.++....+...+..+.+.+||+||++++...+..+++.+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34689999999999999999999998886554  6677777777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999988764 68999999999997542               23789999999999999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      ++.+.+.+..
T Consensus       181 ~l~~~i~~~~  190 (193)
T 2oil_A          181 TVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.9e-31  Score=188.35  Aligned_cols=152  Identities=34%  Similarity=0.545  Sum_probs=131.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.++|+++|++|||||||++++.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD   81 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence            456799999999999999999999998876544  667777777788888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc---------------cCCceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++.+++.+..|+..+....     .++|+++|+||+|+..               ...+++++||++|.|+
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999999887653     5789999999999742               1237999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy17231        145 EEMFADIGRQLILS  158 (189)
Q Consensus       145 ~~~~~~i~~~i~~~  158 (189)
                      +++|+++.+.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.5e-31  Score=188.11  Aligned_cols=150  Identities=29%  Similarity=0.505  Sum_probs=131.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            44799999999999999999999998876544  5666667777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999988876 68999999999997431               23789999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        150 DIGRQLIL  157 (189)
Q Consensus       150 ~i~~~i~~  157 (189)
                      ++.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.4e-31  Score=188.19  Aligned_cols=151  Identities=25%  Similarity=0.319  Sum_probs=120.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--cccchHHHhcCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--VASITSSYYKFA   83 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~   83 (189)
                      ++.+||+++|++|||||||+++|.+..+....   ++.+.+.....+.+++..+.+.+||+||++.  +..+...+++.+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   78 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH---EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG   78 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C---CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc---CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence            56799999999999999999999988765443   3455576677778888888999999999987  556677888999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|+++
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  158 (175)
T 2nzj_A           79 SAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAE  158 (175)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence            99999999999999999999999888753  57999999999997532               13789999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy17231        147 MFADIGRQLILSN  159 (189)
Q Consensus       147 ~~~~i~~~i~~~~  159 (189)
                      +|+++.+.+...+
T Consensus       159 l~~~l~~~~~~~~  171 (175)
T 2nzj_A          159 LFEGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999886554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.4e-31  Score=188.19  Aligned_cols=151  Identities=29%  Similarity=0.519  Sum_probs=125.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   80 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN   80 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCC
Confidence            356799999999999999999999998876544  666676777777778888899999999999999988889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1z08_A           81 GAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF  160 (170)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999999999887654 57999999999997542               2378999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++.+.+.+
T Consensus       161 ~~l~~~~~~  169 (170)
T 1z08_A          161 LDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-31  Score=195.73  Aligned_cols=154  Identities=19%  Similarity=0.333  Sum_probs=128.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY   80 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   80 (189)
                      |.+...+.+||+++|++|||||||+++|.+..+...+  .+|++..+ ...+..++..+.+.+||+||+++|..++..++
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   97 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY   97 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhc
Confidence            4455567899999999999999999999999886544  56665444 44566677788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-C
Q psy17231         81 KFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-S  131 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~  131 (189)
                      +.++++++|||++++++|+.+ ..|+..+....++.|+++|+||+|+...                           . .
T Consensus        98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  177 (205)
T 1gwn_A           98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA  177 (205)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence            999999999999999999999 7999988887778999999999998631                           1 3


Q ss_pred             ceEEeecc-CCCCHHHHHHHHHHHHHH
Q psy17231        132 STYKTSCK-TGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       132 ~~~~~Sa~-~~~~i~~~~~~i~~~i~~  157 (189)
                      +|++|||+ +|.|++++|+++++.+++
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            78999999 689999999999998875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=9.8e-31  Score=188.65  Aligned_cols=150  Identities=31%  Similarity=0.486  Sum_probs=132.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|.+..+....  .++.+.++....+...+..+.+.+||+||++++...+..+++.+|++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            4689999999999999999999998876554  56666677777777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999988875 68999999999997532               237899999999999999999


Q ss_pred             HHHHHHHh
Q psy17231        151 IGRQLILS  158 (189)
Q Consensus       151 i~~~i~~~  158 (189)
                      +.+.+.+.
T Consensus       179 l~~~i~~~  186 (189)
T 2gf9_A          179 LVDVICEK  186 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.5e-31  Score=190.68  Aligned_cols=151  Identities=21%  Similarity=0.300  Sum_probs=130.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|++..+. .....++..+.+.+||+||++++...+..+++.+|+
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--VPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--CCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            45799999999999999999999999875544  566664443 456778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCc-eEEeeccCCCCHHH
Q psy17231         86 AILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISS-TYKTSCKTGEGVEE  146 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~-~~~~Sa~~~~~i~~  146 (189)
                      +++|||++++++|+.+ ..|+..+....+++|+++|+||+|+...                 ... ++++||++|.|+++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            9999999999999997 7899888877788999999999997531                 124 99999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy17231        147 MFADIGRQLILSN  159 (189)
Q Consensus       147 ~~~~i~~~i~~~~  159 (189)
                      +|+++.+.+.+..
T Consensus       178 l~~~l~~~i~~~~  190 (194)
T 3reg_A          178 VFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.98  E-value=2.4e-31  Score=195.82  Aligned_cols=152  Identities=18%  Similarity=0.325  Sum_probs=128.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++.+||+++|++|||||||+++|.+..+...+  .+|++.++ ...+..++..+.+.+||++|++++..++..+++.+++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            56799999999999999999999999886554  66766554 4556677778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHH-HHHHHHHHHHhCCCCcEEEEeeccccccc---------------------------CC-ceEEe
Q psy17231         86 AILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------IS-STYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~~-~~~~~  136 (189)
                      +++|||++++++|+. +..|+..+....+++|+++|+||+|+...                           .. +|++|
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999999 69999999988788999999999998541                           23 79999


Q ss_pred             eccCCCC-HHHHHHHHHHHHHHhhh
Q psy17231        137 SCKTGEG-VEEMFADIGRQLILSNR  160 (189)
Q Consensus       137 Sa~~~~~-i~~~~~~i~~~i~~~~~  160 (189)
                      ||++|.| ++++|+++++.+.+...
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCcccHHHHHHHHHHHHhccCc
Confidence            9999998 99999999999876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.9e-31  Score=191.13  Aligned_cols=152  Identities=34%  Similarity=0.521  Sum_probs=133.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            45799999999999999999999998886554  6677777777788888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+++.+..|+..+....  .++|+++|+||+|+...              ..+++++||++|.|++++|+
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  170 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999887754  57999999999997421              23789999999999999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      ++.+.+.+..
T Consensus       171 ~l~~~~~~~~  180 (195)
T 1x3s_A          171 ELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHTSG
T ss_pred             HHHHHHHhhh
Confidence            9999987643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.98  E-value=6.6e-31  Score=191.21  Aligned_cols=153  Identities=26%  Similarity=0.330  Sum_probs=124.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+...+  .+|++ +.....+..++..+.+.+||+||++++..++..+++.+|
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY--IPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC----------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            456899999999999999999999988765444  55655 333456677888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231         85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~  135 (189)
                      ++++|||++++++++.+. .|+..+....+++|+++|+||+|+...                           . .+|++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999996 799988887778999999999998541                           1 27899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |||++|.|++++|+++.+.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999876643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.98  E-value=9.5e-31  Score=184.35  Aligned_cols=150  Identities=29%  Similarity=0.470  Sum_probs=125.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +++.+||+++|++|+|||||+++|.+..+...+  .++.+.. ....+..++..+.+.+||+||++++...+..+++.++
T Consensus         1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   77 (168)
T 1u8z_A            1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   77 (168)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCccCCCC--CCCcceE-EEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence            357899999999999999999999998875544  4454433 3445667888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T 1u8z_A           78 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            9999999999999999999999988875  48999999999997532               237899999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        148 FADIGRQLIL  157 (189)
Q Consensus       148 ~~~i~~~i~~  157 (189)
                      |+++.+.+.+
T Consensus       158 ~~~l~~~i~~  167 (168)
T 1u8z_A          158 FFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.98  E-value=1.8e-31  Score=190.27  Aligned_cols=153  Identities=25%  Similarity=0.390  Sum_probs=130.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      .++.+||+++|++|||||||+++|.+..+...+  .+|++.++....+...+ ..+.+.+||+||++++...+..+++.+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   80 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGA   80 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHH--HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTC
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhC
Confidence            567899999999999999999999988875433  56777777777777766 578999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCc-EEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAK-IFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i  144 (189)
                      |++++|||++++++++.+..|+..+....   ...| +++|+||+|+...               ..+++++||++|.|+
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  160 (178)
T 2hxs_A           81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV  160 (178)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence            99999999999999999999999887753   2455 8999999997531               237899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy17231        145 EEMFADIGRQLILSN  159 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~  159 (189)
                      +++|+++.+.+.+..
T Consensus       161 ~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          161 FLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999886543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.98  E-value=5.1e-31  Score=186.34  Aligned_cols=150  Identities=29%  Similarity=0.514  Sum_probs=127.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|+|||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   79 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGI   79 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence            4689999999999999999999998876544  66666677777777788788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++|||++++.+++.+..|+..+.... .++|+++|+||+|+...              ..+++++||++|.|++++|+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           80 ILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988875 68999999999997321              2379999999999999999999


Q ss_pred             HHHHHHh
Q psy17231        152 GRQLILS  158 (189)
Q Consensus       152 ~~~i~~~  158 (189)
                      .+.+.+.
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=1.1e-30  Score=184.55  Aligned_cols=148  Identities=28%  Similarity=0.502  Sum_probs=131.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|+|||||+++|.+..+....  .++.+.++........+....+.+||+||++++...+..+++.+|+
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNI--NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            46799999999999999999999999876554  6677777777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+++.+..|+..+.... +..|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            999999999999999999999998874 78999999999997432               23789999999999999999


Q ss_pred             HHHHHH
Q psy17231        150 DIGRQL  155 (189)
Q Consensus       150 ~i~~~i  155 (189)
                      ++.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.98  E-value=4.2e-31  Score=189.05  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=129.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.++.+....  .+|.+..+ ...+..++..+.+.+||+||++++...+..+++.+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY--DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            45799999999999999999999988876555  56666555 6667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            999999999999999999999987765  57999999999997421               2379999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy17231        149 ADIGRQLILSN  159 (189)
Q Consensus       149 ~~i~~~i~~~~  159 (189)
                      +++.+.+.+..
T Consensus       161 ~~l~~~~~~~~  171 (181)
T 3t5g_A          161 RRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.7e-31  Score=190.98  Aligned_cols=148  Identities=23%  Similarity=0.323  Sum_probs=127.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.+..+...+  .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|++
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSC--CCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            5689999999999999999999998875544  55655333 44566777788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEee
Q psy17231         87 ILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTS  137 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~S  137 (189)
                      ++|||++++++|+.+. .|+..+....+++|+++|+||+|+...                           . .+++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999997 899998887778999999999998531                           1 2799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~  157 (189)
                      |++|.|++++|+++.+.+..
T Consensus       174 a~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.98  E-value=4.3e-31  Score=188.19  Aligned_cols=149  Identities=32%  Similarity=0.566  Sum_probs=131.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ++++||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            45699999999999999999999988876554  6667777777888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999887764 58999999999997532               23789999999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++.+.+.
T Consensus       170 ~l~~~~~  176 (179)
T 2y8e_A          170 RVAAALP  176 (179)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.4e-31  Score=191.06  Aligned_cols=150  Identities=31%  Similarity=0.484  Sum_probs=131.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.++....+...+....+.+||+||++++...+..+++.+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI--SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC--CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            55799999999999999999999998875544  6677777777777777778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            999999999999999999999988875 58999999999997531               23789999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        150 DIGRQLIL  157 (189)
Q Consensus       150 ~i~~~i~~  157 (189)
                      ++.+.+.+
T Consensus       179 ~l~~~i~~  186 (192)
T 2fg5_A          179 GISRQIPP  186 (192)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99887643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=9.7e-31  Score=186.68  Aligned_cols=148  Identities=22%  Similarity=0.427  Sum_probs=123.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|||||||+++|.+..+.. +  .+|++ +.....+..++..+.+.+||+||+++     ..+++.+|
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-L--EKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C--SSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-c--CCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            4678999999999999999999999988864 3  55665 34456677788889999999999876     46788899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccc----c--------------CCceEEeeccCCC
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHN----L--------------ISSTYKTSCKTGE  142 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~----~--------------~~~~~~~Sa~~~~  142 (189)
                      ++++|||++++++|+.+..|+..+....    +++|+++|+||+|+..    .              ..+++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            9999999999999999999876665542    5799999999999721    0              2378999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhh
Q psy17231        143 GVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~~~~  161 (189)
                      |++++|+++.+.+.+....
T Consensus       155 ~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999998876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.98  E-value=4.4e-31  Score=191.17  Aligned_cols=151  Identities=35%  Similarity=0.568  Sum_probs=127.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||||+++|.+..+....  .++.+.++....+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            44689999999999999999999988876544  5666667777788888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++.+++.+..|+..+.... .++|+++|+||+|+...                ..+++++||++|.|++++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887765 57999999999997431                2378999999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++.+.+.++
T Consensus       182 ~~l~~~i~~~  191 (192)
T 2il1_A          182 LKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.98  E-value=1e-30  Score=188.59  Aligned_cols=149  Identities=23%  Similarity=0.306  Sum_probs=123.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+...+  .+|++..+ ......++..+.+.+||++|++++..+ ..+++.++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEY--DPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCccc--CCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            356799999999999999999999998876554  56666444 445667888899999999999988875 67899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeec-cCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSC-KTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa-~~~~~i  144 (189)
                      ++++|||++++++|+.+..|+..+....    .++|+++|+||+|+...               ..+++++|| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999999988763    58999999999997532               237999999 899999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        145 EEMFADIGRQLIL  157 (189)
Q Consensus       145 ~~~~~~i~~~i~~  157 (189)
                      +++|+++++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.98  E-value=1e-30  Score=188.24  Aligned_cols=147  Identities=27%  Similarity=0.497  Sum_probs=125.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      .+++.+||+++|++|||||||++++.+..+...+  .+|.  ..+...+.+++..+.+.+|||+|++++.     +++.+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            3577899999999999999999999999886655  4453  3334677888888999999999998875     77889


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc-----------------c-CCceEEeeccCCCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN-----------------L-ISSTYKTSCKTGEG  143 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~-----------------~-~~~~~~~Sa~~~~~  143 (189)
                      +++++|||++++++|+.+..|+..+....  .+.|+++|+||+|+..                 . ..+|++|||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            99999999999999999999999998764  5799999999999731                 1 14899999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy17231        144 VEEMFADIGRQLILSN  159 (189)
Q Consensus       144 i~~~~~~i~~~i~~~~  159 (189)
                      ++++|+++++.+.+.+
T Consensus       167 v~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          167 VERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987664

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.98  E-value=5.9e-31  Score=186.12  Aligned_cols=149  Identities=22%  Similarity=0.306  Sum_probs=116.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-chHHHhcCCcEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-ITSSYYKFAEAA   86 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~   86 (189)
                      .+||+++|++|||||||+++|.+..+....  .++.+.+.....+..++..+.+.+||+||++++.. ++..+++.+|++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~   79 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAF   79 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEE
Confidence            579999999999999999999876665444  33334466677777888889999999999998876 777788999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  159 (169)
T 3q85_A           80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE  159 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHH
Confidence            99999999999999999999998876  38999999999997522               23889999999999999999


Q ss_pred             HHHHHHHHh
Q psy17231        150 DIGRQLILS  158 (189)
Q Consensus       150 ~i~~~i~~~  158 (189)
                      ++.+.+...
T Consensus       160 ~l~~~i~~~  168 (169)
T 3q85_A          160 GAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.98  E-value=5.7e-31  Score=191.78  Aligned_cols=153  Identities=31%  Similarity=0.496  Sum_probs=126.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  100 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG  100 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence            44689999999999999999999988876544  5666667777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus       101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999988765 68999999999997532               23689999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy17231        150 DIGRQLILSNR  160 (189)
Q Consensus       150 ~i~~~i~~~~~  160 (189)
                      ++.+.+.+...
T Consensus       181 ~l~~~i~~~~~  191 (200)
T 2o52_A          181 KCARTILNKID  191 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.98  E-value=5.4e-31  Score=185.70  Aligned_cols=148  Identities=26%  Similarity=0.393  Sum_probs=126.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||+++|.+..+...+  .+|.+... ...+..++..+.+.+||+||++++...+..+++.+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   77 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG   77 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSC--CCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence            46799999999999999999999998876554  55655343 4556667778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +++|||++++++++.+..|+..+....  .+.|+++|+||+|+...                ..+++++||++|.|++++
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence            999999999999999999999887753  58999999999997431                347999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        148 FADIGRQLI  156 (189)
Q Consensus       148 ~~~i~~~i~  156 (189)
                      |+++.+.+.
T Consensus       158 ~~~l~~~i~  166 (167)
T 1c1y_A          158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988763

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5e-32  Score=195.82  Aligned_cols=152  Identities=30%  Similarity=0.463  Sum_probs=133.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.++....+...+..+.+.+||+||++.+..++..+++.+|+
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF--VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE--EEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc--CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34689999999999999999999998876554  5666667777777777778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999998876 68999999999997432               23889999999999999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      ++.+.+.+..
T Consensus       179 ~l~~~i~~~~  188 (191)
T 3dz8_A          179 RLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.98  E-value=1.1e-30  Score=188.28  Aligned_cols=153  Identities=27%  Similarity=0.434  Sum_probs=131.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee-EEEEEECCe---------EEEEEEEeCCCccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF-NKEYKVDDR---------SIQMQLWDTGGMERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~   75 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .+|++.++. ...+..++.         .+.+.+||+||++++...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            45699999999999999999999998876544  667776766 455566554         689999999999999999


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeec
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSC  138 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa  138 (189)
                      +..+++.+|++++|||++++.+++.+..|+..+....  .++|+++|+||+|+...               ..+++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            9999999999999999999999999999999988765  58999999999997541               237999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhh
Q psy17231        139 KTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      ++|.|++++|+++.+.+.+...
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.98  E-value=5.8e-31  Score=189.16  Aligned_cols=151  Identities=19%  Similarity=0.330  Sum_probs=128.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+.+||+++|++|||||||+++|.+..+...+  .+|.+..+ ...+..++..+.+.+||+||+++|..++..+++.+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   79 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS   79 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC
Confidence            3567899999999999999999999998886544  56665444 44566677788999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceE
Q psy17231         84 EAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTY  134 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~  134 (189)
                      +++++|||++++++|+.+ ..|+..+....++.|+++|+||+|+...                           . .+|+
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  159 (184)
T 1m7b_A           80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  159 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEE
Confidence            999999999999999999 7899988887678999999999998630                           1 3799


Q ss_pred             Eeecc-CCCCHHHHHHHHHHHHHH
Q psy17231        135 KTSCK-TGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       135 ~~Sa~-~~~~i~~~~~~i~~~i~~  157 (189)
                      +|||+ +|.|++++|+++.+.+.+
T Consensus       160 e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          160 ECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             ECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EeeecCCCcCHHHHHHHHHHHHhc
Confidence            99999 689999999999998864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.4e-30  Score=185.91  Aligned_cols=154  Identities=35%  Similarity=0.533  Sum_probs=125.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+... .+.++++.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            35579999999999999999999999887532 23567777777777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++.+++.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988876 68999999999997531               2389999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy17231        149 ADIGRQLILSN  159 (189)
Q Consensus       149 ~~i~~~i~~~~  159 (189)
                      +++.+.+.+..
T Consensus       166 ~~l~~~~~~~~  176 (180)
T 2g6b_A          166 TAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999886543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.98  E-value=1.2e-30  Score=190.06  Aligned_cols=152  Identities=24%  Similarity=0.401  Sum_probs=129.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF   82 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   82 (189)
                      +|+...+||+++|++|||||||+++|.+..+...+  .++.+.++. ..+..++..+.+.+||+||++++...+..+++.
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   96 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD   96 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence            45667899999999999999999999998886554  556554443 346678888899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------CC-ce
Q psy17231         83 AEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------IS-ST  133 (189)
Q Consensus        83 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~~-~~  133 (189)
                      +|++++|||++++++++.+ ..|+..+....++.|+++|+||+|+...                           .. ++
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A           97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            9999999999999999999 7888888877678999999999997532                           11 68


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      +++||++|.|++++|+++.+.+.+
T Consensus       177 ~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=8.2e-31  Score=187.97  Aligned_cols=151  Identities=24%  Similarity=0.383  Sum_probs=129.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|||||||+++|.++.+...+  .+|.+ +........++..+.+.+||+||++++...+..+++.+|
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   78 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD   78 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC--CCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCc--CCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCc
Confidence            467899999999999999999999988876554  45554 333455677888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231         85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~  135 (189)
                      ++++|||++++.+++.+. .|+..+....++.|+++|+||+|+...                           . .++++
T Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  158 (186)
T 1mh1_A           79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (186)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999997 799888887678999999999997531                           1 27999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      +||++|.|++++|+++.+.+.+.
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          159 CSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             ecCCCccCHHHHHHHHHHHHhcc
Confidence            99999999999999999988644

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.98  E-value=3.5e-30  Score=185.12  Aligned_cols=153  Identities=25%  Similarity=0.401  Sum_probs=129.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+++||+++|++|||||||+++|.+..+....  .++.+ +........++..+.+.+||+||++++..++..+++.+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   78 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   78 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            45799999999999999999999988875554  44443 5555667778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+....  .+.|+++|+||+|+...              ..+++++||++|.|++++|+
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999988864  58999999999997532              23899999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy17231        150 DIGRQLILSNRS  161 (189)
Q Consensus       150 ~i~~~i~~~~~~  161 (189)
                      ++.+.+.+....
T Consensus       159 ~l~~~~~~~~~~  170 (189)
T 4dsu_A          159 TLVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh
Confidence            999998766544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=4.3e-31  Score=192.15  Aligned_cols=149  Identities=31%  Similarity=0.462  Sum_probs=122.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccC--CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            45799999999999999999999998875544  6677777777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc--------c-------------CCceEEeeccCCCC
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN--------L-------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~--------~-------------~~~~~~~Sa~~~~~  143 (189)
                      +++|||++++.+++.+..|+..+.... .++|+++|+||+|+..        .             ..+++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            999999999999999999999887765 5799999999999752        1             13689999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLI  156 (189)
Q Consensus       144 i~~~~~~i~~~i~  156 (189)
                      ++++|+++.+.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=191.67  Aligned_cols=152  Identities=22%  Similarity=0.295  Sum_probs=126.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-chHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-ITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~   84 (189)
                      .+.+||+++|++|||||||+++|.+.......  .++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--TTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccC--CCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            45799999999999999999999754432222  33444566666777888889999999999988765 7788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            9999999999999999999999988765  48999999999997531               237999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++++.+.+..
T Consensus       179 f~~l~~~i~~~~  190 (195)
T 3cbq_A          179 FEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999886544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=8.9e-31  Score=184.68  Aligned_cols=148  Identities=22%  Similarity=0.279  Sum_probs=106.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.+......   .++.+... ......++..+.+.+||+||++.+..++..+++.++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   76 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE---AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY   76 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-------------CEE-EEEEEETTEEEEEEEEECC---------------CCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCC---CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence            358999999999999999999986655322   33334333 45567788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  156 (166)
T 3q72_A           77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE  156 (166)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Confidence            99999999999999999999988764  68999999999997532               23789999999999999999


Q ss_pred             HHHHHHHHh
Q psy17231        150 DIGRQLILS  158 (189)
Q Consensus       150 ~i~~~i~~~  158 (189)
                      ++.+.+.+.
T Consensus       157 ~l~~~~~~~  165 (166)
T 3q72_A          157 GVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=1.1e-30  Score=188.34  Aligned_cols=150  Identities=29%  Similarity=0.501  Sum_probs=128.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cchHHHhcCC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-SITSSYYKFA   83 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~   83 (189)
                      .++.+||+++|++|||||||+++|.+..+....  .++++.++....+..++..+.+.+||+||++++. .++..+++.+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            356799999999999999999999998886655  6677777777888888888999999999999988 7889999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCC---CC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG---EG  143 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~---~~  143 (189)
                      |++++|||++++.+++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|   .|
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            99999999999999999999999998874  68999999999997432               237999999999   99


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLI  156 (189)
Q Consensus       144 i~~~~~~i~~~i~  156 (189)
                      ++++|+++.+.+.
T Consensus       175 i~~l~~~l~~~i~  187 (189)
T 1z06_A          175 VEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=2.3e-30  Score=185.69  Aligned_cols=153  Identities=29%  Similarity=0.459  Sum_probs=129.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|||||||+++|.+..+...+  .++.+.. ....+..++..+.+.+||+||++++..++..+++.++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC--CCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            467899999999999999999999998875544  4454433 3455667787889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            9999999999999999999999988875  38999999999997532               237899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy17231        148 FADIGRQLILSNR  160 (189)
Q Consensus       148 ~~~i~~~i~~~~~  160 (189)
                      |+++.+.+.+.+.
T Consensus       172 ~~~l~~~i~~~~~  184 (187)
T 2a9k_A          172 FFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=2.1e-30  Score=182.43  Aligned_cols=149  Identities=34%  Similarity=0.456  Sum_probs=128.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+++||+++|++|+|||||++++.++.+...+  .++.+ +.....+..++....+.+||+||++++..++..+++.+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~   77 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG   77 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccC--CCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46799999999999999999999998876554  44544 3345667778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++++.+..|+..+....  .+.|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  157 (167)
T 1kao_A           78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF  157 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHH
Confidence            999999999999999999999888764  58999999999996432               2379999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++.+.+.+
T Consensus       158 ~~l~~~~~~  166 (167)
T 1kao_A          158 AEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999988753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.7e-31  Score=193.58  Aligned_cols=154  Identities=30%  Similarity=0.490  Sum_probs=127.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|.+..+...+  .++.+.++....+..++..+.+.+||+||++++..++..+++.++++
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            4689999999999999999999998886554  56777777777788888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++.+|+.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988774 57999999999997532               237899999999999999999


Q ss_pred             HHHHHHHhhhhh
Q psy17231        151 IGRQLILSNRSR  162 (189)
Q Consensus       151 i~~~i~~~~~~~  162 (189)
                      +.+.+.+.....
T Consensus       170 l~~~i~~~~~~~  181 (223)
T 3cpj_B          170 LINTIYQKVSKH  181 (223)
T ss_dssp             HHHHHTTCC---
T ss_pred             HHHHHHHHhhhc
Confidence            999998765543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=187.90  Aligned_cols=152  Identities=29%  Similarity=0.466  Sum_probs=131.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.++|+++|++|||||||+++|.+..+...+  .+|.+.. ....+..++..+.+.+||+||++++..++..+++.++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceE-EEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            356799999999999999999999998875544  5555433 3455677888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999998875  48999999999997542               237899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++.+.+.+..
T Consensus       168 ~~~l~~~i~~~~  179 (206)
T 2bov_A          168 FFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999999988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=191.65  Aligned_cols=153  Identities=19%  Similarity=0.270  Sum_probs=125.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|.+..+ ......++..+.+.+||+||++++...+..+++.+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            46799999999999999999999999886554  56665444 5555666667889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999999987764  57999999999997532               2378999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy17231        149 ADIGRQLILSNRS  161 (189)
Q Consensus       149 ~~i~~~i~~~~~~  161 (189)
                      +++.+.+.+....
T Consensus       179 ~~l~~~i~~~~~~  191 (201)
T 3oes_A          179 TKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHhhhhh
Confidence            9999999876544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=8e-31  Score=192.33  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=128.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|....+...+  .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccC--CCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            56799999999999999999999998875544  56665333 4556677778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-----------------------C-CceEEeeccC
Q psy17231         86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------I-SSTYKTSCKT  140 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~-~~~~~~Sa~~  140 (189)
                      +++|||++++++|+.+. .|+..+....++.|+++|+||+|+...                       . .+|+++||++
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            99999999999999996 899998887778999999999987431                       1 3899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      |.|++++|+++++.+.+...+
T Consensus       164 g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC---
T ss_pred             CCCHHHHHHHHHHHHhhhhhh
Confidence            999999999999999876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=2.2e-31  Score=196.02  Aligned_cols=156  Identities=27%  Similarity=0.429  Sum_probs=131.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe----------EEEEEEEeCCCccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SIQMQLWDTGGMERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~   75 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .+|++.++....+.+++.          .+.+.+||+||++++...
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE--EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC--CCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            44689999999999999999999988875433  667776776666666554          688999999999999999


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeec
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSC  138 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa  138 (189)
                      +..+++.+|++++|||++++.+++.+..|+..+....  .++|+++|+||+|+...               ..+++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            9999999999999999999999999999998876654  57999999999997532               237999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhhhhh
Q psy17231        139 KTGEGVEEMFADIGRQLILSNRSRL  163 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~~~~~~~~  163 (189)
                      ++|.|++++|+++.+.+.+......
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999887654433

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2e-30  Score=189.81  Aligned_cols=152  Identities=23%  Similarity=0.396  Sum_probs=126.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .+.++||+++|++|||||||+++|.+..+...+  .++.+..+. ..+..++..+.+.+||+||++++...+..+++.+|
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence            466789999999999999999999998876544  555554443 34667788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231         85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~  135 (189)
                      ++++|||++++++++.+ ..|+..+....++.|+++|+||+|+...                           . .++++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A           99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999 7898888877678999999999998542                           1 16899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      +||++|.|++++|+++.+.+.+..
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999887543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=7e-30  Score=185.44  Aligned_cols=151  Identities=29%  Similarity=0.431  Sum_probs=129.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeE---------------------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---------------------------   58 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------------------   58 (189)
                      .+.+||+++|++|+|||||+++|.+..+....  .+|++.++....+..++..                           
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENT--NTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSCEEEEEEEETTC-----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCc--CccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence            56899999999999999999999999876544  6677767776666666544                           


Q ss_pred             ----------EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         59 ----------IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        59 ----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                                ..+.+||+||++++...+..+++.+|++++|||++++.+++.+..|+..+.... ..|+++|+||+|...
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~  161 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNK  161 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccc
Confidence                      789999999999999999999999999999999999999999999999988875 499999999999421


Q ss_pred             c--------------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        129 L--------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       129 ~--------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      .              ..+++++||++|.|++++|+++.+.+.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            1              237899999999999999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=4.9e-31  Score=194.77  Aligned_cols=154  Identities=25%  Similarity=0.453  Sum_probs=135.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|..+.+...+  .++.+.+........++..+.+.+||+||++.+..++..+++.++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE--ETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            356799999999999999999998776664433  667777888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      ++++|||++++.+++.+..|+..+....+++|+++|+||+|+...             ..+++++||++|.|++++|+++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999999999988778999999999997532             2379999999999999999999


Q ss_pred             HHHHHHhhh
Q psy17231        152 GRQLILSNR  160 (189)
Q Consensus       152 ~~~i~~~~~  160 (189)
                      .+.+.....
T Consensus       170 ~~~l~~~~~  178 (221)
T 3gj0_A          170 ARKLIGDPN  178 (221)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHHhCcc
Confidence            999876643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2e-30  Score=190.54  Aligned_cols=152  Identities=27%  Similarity=0.319  Sum_probs=122.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~   84 (189)
                      .+.+||+++|++|||||||+++|.+........ .++++.++....+.+++..+.+.+|||+|++. +..+...+++.++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            456999999999999999999998644321111 23456677777778888888999999999876 4456666788899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+|++|||++|.||+++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999998877542  57999999999997531               137899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy17231        148 FADIGRQLILS  158 (189)
Q Consensus       148 ~~~i~~~i~~~  158 (189)
                      |+++++.+...
T Consensus       194 f~~l~~~i~~~  204 (211)
T 2g3y_A          194 FEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988644

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4.5e-30  Score=188.19  Aligned_cols=152  Identities=30%  Similarity=0.496  Sum_probs=132.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||+++|.+..+....  .++++.++....+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34689999999999999999999998876544  6666767777778888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      +++|||++++.+++.+..|+..+.... .++|+++|+||+|+...              ..+++++||++|.|++++|++
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999888765 47999999999997321              237999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +.+.+.+..
T Consensus       176 l~~~~~~~~  184 (213)
T 3cph_A          176 LAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=191.05  Aligned_cols=151  Identities=21%  Similarity=0.387  Sum_probs=110.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|.+ +.....+..++..+.+.+||+||++++..++..+++.+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  108 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESY--TPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV  108 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence            45799999999999999999999988775544  44544 3335566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231         86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~  136 (189)
                      +++|||++++++|+.+. .|+..+....+++|+++|+||+|+...                           . .++++|
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999996 799988887778999999999997532                           1 278999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHhh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      ||++|.|++++|+++.+.+.+..
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=4.2e-31  Score=191.16  Aligned_cols=154  Identities=15%  Similarity=0.158  Sum_probs=125.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---------CCcccceeeeeEEEE-EECCeEEEEEEEeCCCccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---------SRKSTLGLDNFNKEY-KVDDRSIQMQLWDTGGMERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---------~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~   75 (189)
                      .+.+||+++|++|||||||++.+.+. +...+         ...+|++.++....+ ..++..+.+.+|||||++++...
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            45799999999999999999766644 33221         124566666655544 56677889999999999999999


Q ss_pred             hHHHhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CC-ceEE
Q psy17231         76 TSSYYKFAEAAILVFSLD------NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------IS-STYK  135 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~-~~~~  135 (189)
                      +..+++.+|++++|||++      +.++|+.+..|+..+.....++|+++|+||+|+...             .. ++++
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLE  170 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEE
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEE
Confidence            999999999999999999      667888888998887544478999999999997532             23 8999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      +||++|.|++++|+++.+.+.+...
T Consensus       171 ~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          171 AVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCcCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999887643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.5e-30  Score=185.81  Aligned_cols=150  Identities=25%  Similarity=0.398  Sum_probs=127.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|.+... ...+..++..+.+.+||+||+++ ...+..+++.+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            56799999999999999999999998886554  55555333 45567788889999999999988 7778889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCC-CHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGE-GVEEM  147 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~-~i~~~  147 (189)
                      +++|||++++++++.+..|+..+....  .++|+++|+||+|+...               ..+++++||++|. |++++
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            999999999999999999999888753  58999999999997542               2378999999999 99999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++.+.+.+.+
T Consensus       182 ~~~l~~~i~~~~  193 (196)
T 2atv_A          182 FYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.9e-30  Score=189.58  Aligned_cols=148  Identities=24%  Similarity=0.396  Sum_probs=124.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|||||||++++..+.+....  .++.+ +.....+..++..+.+.+||+||++++...+..+++.+|
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD  103 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            466899999999999999999999998876554  45544 445556677788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEE
Q psy17231         85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~  135 (189)
                      ++++|||++++++++.+. .|+..+....+++|+++|+||+|+...                            ..++++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          104 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            999999999999999996 899888887778999999999997532                            125999


Q ss_pred             eeccCCCCHHHHHHHHHHHH
Q psy17231        136 TSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      +||++|.|++++|+++.+.+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHTT
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=4e-31  Score=189.09  Aligned_cols=149  Identities=26%  Similarity=0.352  Sum_probs=113.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|+|||||++++....+...+  .+|++..+ ...+..++..+.+.+||+||++++...+..+++.+|
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--VPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC------------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            467899999999999999999999988875444  45554333 223344556678899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------------C-CceEEee
Q psy17231         85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------------I-SSTYKTS  137 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------------~-~~~~~~S  137 (189)
                      ++++|||++++++++.+. .|+..+....++.|+++|+||+|+...                         . .+++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  161 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS  161 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            999999999999999997 799988887678999999999886321                         2 2799999


Q ss_pred             ccCCCCHHHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~  156 (189)
                      |++|.|++++|+++.+.+.
T Consensus       162 a~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          162 SKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998774

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=2.8e-29  Score=176.35  Aligned_cols=149  Identities=26%  Similarity=0.427  Sum_probs=126.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|+|||||++++.+..+....  .++.+ +.....+..++..+.+.+||+||++++...+..++..+++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   77 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   77 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCcccc--CCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCE
Confidence            46789999999999999999999988876544  44444 3334556677878899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++++.+..|+..+....  .++|+++|+||+|+...              ..+++++||++|.|++++|+
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (166)
T 2ce2_X           78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            999999999999999999999888765  37999999999996531              23899999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        150 DIGRQLIL  157 (189)
Q Consensus       150 ~i~~~i~~  157 (189)
                      ++.+.+.+
T Consensus       158 ~l~~~~~~  165 (166)
T 2ce2_X          158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.5e-29  Score=182.12  Aligned_cols=153  Identities=27%  Similarity=0.334  Sum_probs=122.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~   84 (189)
                      .+.+||+++|++|||||||+++|.+........ .++++.+.....+.+++..+.+.+||++|.+. +..+...+++.++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            567999999999999999999998643311111 23456676677778888888999999999876 4557778888999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...               ..+|++|||++|.||+++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999998887653  57999999999997421               237899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy17231        148 FADIGRQLILSN  159 (189)
Q Consensus       148 ~~~i~~~i~~~~  159 (189)
                      |+++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=3.7e-29  Score=180.32  Aligned_cols=153  Identities=25%  Similarity=0.387  Sum_probs=119.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .++.+||+++|++|||||||+++|.+..+....  .++.+ ......+..++..+.+.+||+||++++...+..+++.++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCcccc--CCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            367899999999999999999999988876544  44444 333456677788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++.+++.+..|+..+....  .++|+++|+||+|+...              ..+++++||++|.|++++|
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887764  47999999999996531              2389999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy17231        149 ADIGRQLILSNR  160 (189)
Q Consensus       149 ~~i~~~i~~~~~  160 (189)
                      +++.+.+.+.+.
T Consensus       175 ~~l~~~~~~~~~  186 (190)
T 3con_A          175 YTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=7.8e-31  Score=191.33  Aligned_cols=155  Identities=21%  Similarity=0.290  Sum_probs=98.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCcccceeeeeEEEEEECCe--EEEEEEEeCCCccccccchHHHhc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFISSSSRKSTLGLDNFNKEYKVDDR--SIQMQLWDTGGMERVASITSSYYK   81 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~   81 (189)
                      .+.++|+++|++|||||||+++|.+.  .+...+  .+|++.++....+.+++.  .+.+.+||+||++++...+..+++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDY--AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCC--CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            34589999999999999999999988  554333  667776777777788776  789999999999999989999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CCcEEEEeecccccc-c---------------CCceEEeeccC-
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAE----NAKIFLCGNNEQCHN-L---------------ISSTYKTSCKT-  140 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~d~~~-~---------------~~~~~~~Sa~~-  140 (189)
                      .+|++++|||++++.+|+.+..|+..+.....    ++|+++|+||+|+.. .               ..+++++||++ 
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  175 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP  175 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence            99999999999999999999999999988753    899999999999865 1               23789999999 


Q ss_pred             CCCHHHHHHHHHHHHHHhhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRSR  162 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~~  162 (189)
                      |.|++++|+++.+.+.+.....
T Consensus       176 ~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          176 GKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999888765543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=5e-30  Score=185.98  Aligned_cols=150  Identities=15%  Similarity=0.290  Sum_probs=122.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .+.+||+++|++|||||||+++|.+..+.. .+  .+|++....  .+.  ...+.+.+||+||++++...+..+++.+|
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI--TATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CC--CCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCccccc--ccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            557899999999999999999999988765 33  566663332  333  33478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC---------CCCcEEEEeeccccccc-------------------CCceEEe
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA---------ENAKIFLCGNNEQCHNL-------------------ISSTYKT  136 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~d~~~~-------------------~~~~~~~  136 (189)
                      ++++|||++++++|+.+..|+..+....         .++|+++|+||+|+...                   ..++++|
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence            9999999999999999999998887652         27999999999986533                   1257999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      ||++|.|++++|+++.+.+.+....
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eCCCccCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998876443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.7e-29  Score=178.83  Aligned_cols=146  Identities=19%  Similarity=0.378  Sum_probs=122.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||+++|.+..+..   +.+|++..  ...+.++  ...+.+||+||++++...+..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   77 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDA   77 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            457999999999999999999999888743   25566543  3344444  4688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++|+.+..|+..+....  .++|+++|+||+|+...                  ..+++++||++|.|++
T Consensus        78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           78 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999999999998887653  58999999999997532                  1168999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.++
T Consensus       158 ~l~~~l~~~i~~~  170 (171)
T 1upt_A          158 EAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=179.70  Aligned_cols=147  Identities=26%  Similarity=0.286  Sum_probs=123.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.+..+....  .++.+... ......++..+.+.+||+||++++...+..+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   78 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAF   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence            4689999999999999999999988775444  45554333 34456677778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++|||++++++++.+..|+..+....   ++.|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (172)
T 2erx_A           79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF  158 (172)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHH
Confidence            99999999999999999988877653   57999999999997432               2378999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        149 ADIGRQLI  156 (189)
Q Consensus       149 ~~i~~~i~  156 (189)
                      +++.+.+.
T Consensus       159 ~~l~~~~~  166 (172)
T 2erx_A          159 QELLNLEK  166 (172)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHh
Confidence            99987664

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.6e-30  Score=186.33  Aligned_cols=144  Identities=16%  Similarity=0.220  Sum_probs=114.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+.++|+++|++|||||||+++|.+..+..   +.+|++.+  ...+.+++  +.+.+|||||++++..++..+++.+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI   93 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence            34678899999999999999999999877642   24565543  34555665  6889999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------------------CC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------------------IS  131 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------------------~~  131 (189)
                      |++++|||++++++|+.+..|+..+....  .++|+++|+||+|+.+.                              ..
T Consensus        94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (198)
T 1f6b_A           94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  173 (198)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence            99999999999999999999999887652  68999999999997421                              12


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHH
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      ++++|||++|.|++++|+++.+.
T Consensus       174 ~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          174 EVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.4e-29  Score=183.01  Aligned_cols=144  Identities=16%  Similarity=0.261  Sum_probs=118.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+.+||+++|++|||||||++++.+..+..   +.+|++..  ...+..++  +.+.+||+||++++...+..+++.+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV   91 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            34567899999999999999999999888642   35565543  44555665  7889999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------CCceEEe
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------ISSTYKT  136 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------~~~~~~~  136 (189)
                      |++++|||++++++|+++..|+..+.+..  .++|+++|+||+|+...                         ..++++|
T Consensus        92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T 1m2o_B           92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC  171 (190)
T ss_dssp             CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence            99999999999999999999999887642  68999999999987431                         1258999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q psy17231        137 SCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~  154 (189)
                      ||++|.|++++|+++.+.
T Consensus       172 Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          172 SVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             BTTTTBSHHHHHHHHHTT
T ss_pred             ECCcCCCHHHHHHHHHhh
Confidence            999999999999998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=6.2e-30  Score=184.46  Aligned_cols=146  Identities=17%  Similarity=0.284  Sum_probs=122.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+...+  .+|++.+...  +...  .+.+.+||+||++++...+..+++.+|+
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            45799999999999999999999998876444  5666655432  3333  4688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++++.+..|+..+....  .++|+++|+||+|+...                  ..+++++||++|.|++
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            999999999999999999998887642  68999999999997532                  1258999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        146 EMFADIGRQLIL  157 (189)
Q Consensus       146 ~~~~~i~~~i~~  157 (189)
                      ++|+++.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=6.6e-30  Score=183.39  Aligned_cols=147  Identities=20%  Similarity=0.350  Sum_probs=119.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.++|+++|++|||||||+++|.+..+.   ...+|.+..  ...+..+  .+.+.+||+||++.+...+..+++.+|
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~   85 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTD   85 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            357899999999999999999999977542   235666533  3344444  368899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...                  ..++++|||++|.|+
T Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            9999999999999999999998876542  58999999999997532                  125899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy17231        145 EEMFADIGRQLILS  158 (189)
Q Consensus       145 ~~~~~~i~~~i~~~  158 (189)
                      +++|+++.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          166 QDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=6.9e-30  Score=188.08  Aligned_cols=154  Identities=25%  Similarity=0.362  Sum_probs=128.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ...+||+++|++|||||||+++|.+..+....  .++.+........... +..+.+.+||+||++.+...+..++..+|
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            45799999999999999999999988775433  5566555555555443 33488999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...               ..+++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999999988775 45999999999996532               2379999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy17231        149 ADIGRQLILSNRS  161 (189)
Q Consensus       149 ~~i~~~i~~~~~~  161 (189)
                      +++.+.+.+....
T Consensus       167 ~~l~~~~~~~~~~  179 (218)
T 4djt_A          167 LHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHCCTTC
T ss_pred             HHHHHHHhccccc
Confidence            9999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.1e-29  Score=178.71  Aligned_cols=142  Identities=16%  Similarity=0.380  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||++++.++.+..   ..+|++..  ...+...  .+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC---CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc---ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence            589999999999999999999888753   25566533  3333333  4688999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~  148 (189)
                      |||++++++|+.+..|+..+....  .+.|+++|+||+|+....                  .+++++||++|.|++++|
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999999999998887643  689999999999975321                  158999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=195.47  Aligned_cols=150  Identities=37%  Similarity=0.532  Sum_probs=123.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34699999999999999999999988775544  5666667777888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++|+.+..|+..+.... .++|+++|+||+|+...               ..+++++||++|.|++++|+
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999987765 57999999999996422               23789999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        150 DIGRQLIL  157 (189)
Q Consensus       150 ~i~~~i~~  157 (189)
                      ++.+.+.+
T Consensus       189 ~l~~~l~~  196 (199)
T 3l0i_B          189 TMAAEIKK  196 (199)
T ss_dssp             HHTTTTTT
T ss_pred             HHHHHHHH
Confidence            99877643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.5e-29  Score=182.03  Aligned_cols=145  Identities=14%  Similarity=0.337  Sum_probs=116.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|..+.+..   ..+|++.  ....+...  .+.+.+||+||++++...+..+++.+|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF--NVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTE--EEEEEEET--TEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCce--eEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            4568999999999999999999999877642   2556653  23334444  368899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++++++.+..|+..+....  .++|+++|+||+|+....                  .++++|||++|.|+
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            9999999999999999999998887643  589999999999975421                  15899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        145 EEMFADIGRQLI  156 (189)
Q Consensus       145 ~~~~~~i~~~i~  156 (189)
                      +++|+++.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=4e-29  Score=179.59  Aligned_cols=146  Identities=16%  Similarity=0.295  Sum_probs=121.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||++++.+.. ...+  .+|++..  ...+..+  ...+.+||+||++++...+..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~--~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   88 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI--SPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDG   88 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC--CCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc--cccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            568999999999999999999999877 3333  5666533  3344444  3688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++++.+..|+..+....  .+.|+++|+||+|+...                  ..+++++||++|.|++
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           89 LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999999999998887652  68999999999986432                  1268999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.8e-29  Score=179.48  Aligned_cols=146  Identities=21%  Similarity=0.378  Sum_probs=118.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||+++|.++.+.   .+.+|++..  ...+..++  ..+.+||+||++++...+..+++.+|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   86 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   86 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            56899999999999999999999988775   235666533  33444544  688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++|+.+..|+..+....  .+.|+++|+||+|+...                  ..+++++||++|.|++
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           87 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999999999999888752  68999999999987431                  1268999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++++.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.7e-29  Score=180.36  Aligned_cols=151  Identities=26%  Similarity=0.294  Sum_probs=126.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||+++|.+..+...+  .++.+... ......++..+.+.+||+||++++...+..++..+|+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   82 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA   82 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence            56799999999999999999999998876544  45555333 3445667778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++++.+..|+..+....   ++.|+++|+||+|+...              ..+++++||++|.|++++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999999988887776643   47899999999997532              2378999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy17231        149 ADIGRQLILSN  159 (189)
Q Consensus       149 ~~i~~~i~~~~  159 (189)
                      +++.+.+.+..
T Consensus       163 ~~l~~~~~~~~  173 (199)
T 2gf0_A          163 QELLTLETRRN  173 (199)
T ss_dssp             HHHHHHCSSSC
T ss_pred             HHHHHHHhhhh
Confidence            99998876554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2.9e-29  Score=179.79  Aligned_cols=143  Identities=20%  Similarity=0.363  Sum_probs=118.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ..+.+||+++|++|||||||+++|.+..+   ....+|.+...  ..+..++  ..+.+||+||++++...+..+++.+|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            35679999999999999999999998877   22355665443  3444444  68899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHh--CCCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i  144 (189)
                      ++++|||++++++++.+..|+..+...  ..++|+++|+||+|+...                  ..+++++||++|.|+
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  170 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  170 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            999999999999999999999888765  268999999999997431                  116899999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        145 EEMFADIGRQ  154 (189)
Q Consensus       145 ~~~~~~i~~~  154 (189)
                      +++|+++.+.
T Consensus       171 ~~l~~~l~~~  180 (181)
T 2h17_A          171 CQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=177.73  Aligned_cols=147  Identities=18%  Similarity=0.246  Sum_probs=119.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDT-FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ..+.+||+++|++|||||||+++|.+.. +....  .+|++  .....+..++  ..+.+||+||++++...+..+++.+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            3567999999999999999999999877 44333  56665  3334445544  6889999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc------------------CCceEEeeccCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTG  141 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~  141 (189)
                      |++++|||++++++++.+..|+..+....    .++|+++|+||+|+...                  ..+++++||++|
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            99999999999999999999999887763    47999999999987432                  126899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGRQLIL  157 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~  157 (189)
                      .|++++|+++.+.+.+
T Consensus       172 ~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             BTHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999887643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=4.7e-29  Score=178.57  Aligned_cols=146  Identities=19%  Similarity=0.345  Sum_probs=118.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.++|+++|++|||||||++++.++.+.   .+.+|++...  ..+.+++  ..+.+||+||++++...+..+++.+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA   88 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            57899999999999999999999977762   2255665333  3344443  688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++++.+..|+..+....  .+.|+++|+||+|+...                  ..+++++||++|.|++
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           89 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999999999998887653  68999999999996432                  1168999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.9e-29  Score=179.74  Aligned_cols=151  Identities=16%  Similarity=0.264  Sum_probs=115.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE---CCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV---DDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ++||+++|++|||||||+++|.+........+.+|++.++....+..   ++..+.+.+||++|++++..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            58999999999999999999997521112233667777766655443   234678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCc----eEEeeccCC
Q psy17231         85 AAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISS----TYKTSCKTG  141 (189)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~----~~~~Sa~~~  141 (189)
                      ++++|||++++ .+++.+..|+..+....++.|+++|+||+|+...                  ..+    ++++||++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 5899999999998877668999999999886421                  123    899999999


Q ss_pred             C-CHHHHHHHHHHHHHHh
Q psy17231        142 E-GVEEMFADIGRQLILS  158 (189)
Q Consensus       142 ~-~i~~~~~~i~~~i~~~  158 (189)
                      . +++++++.+.+.+.+.
T Consensus       162 ~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          162 SDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             chhHHHHHHHHHHHHhcc
Confidence            7 9999999998877653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=6.4e-29  Score=179.03  Aligned_cols=146  Identities=20%  Similarity=0.339  Sum_probs=122.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||++++..+.+..   +.+|++..  ...+..+  ...+.+|||||++++...+..+++.+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   92 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDA   92 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence            578999999999999999999998777643   24565533  3334444  3688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++|+|++++++++.+..|+..+....  .+.|+++|+||+|+...                  ..++++|||++|.|++
T Consensus        93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           93 VIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999999999998887653  58999999999997532                  1158999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|+++.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=5.3e-27  Score=170.54  Aligned_cols=152  Identities=35%  Similarity=0.505  Sum_probs=130.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...++|+++|++|||||||++++.+..+...+  .++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~   80 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG   80 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence            45789999999999999999999998876554  5666667777888888988899999999999999889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||+++..+++.+..|+..+.... .+.|+++|+||+|+...               ...++++||+++.|++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999989998876654 57999999999987532               12689999999999999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      ++.+.+.+..
T Consensus       161 ~l~~~~~~~~  170 (199)
T 2f9l_A          161 NILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=2.2e-28  Score=177.50  Aligned_cols=145  Identities=20%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEE--EEC-CeEEEEEEEeCCCccccccch---HH
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY--KVD-DRSIQMQLWDTGGMERVASIT---SS   78 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~~~~i~D~~g~~~~~~~~---~~   78 (189)
                      ..+.+||+++|++|||||||++++.+... .    .++.+.++.....  .+. +..+.+.+||++|+++|....   ..
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS-P----NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCC-G----GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCC-C----cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            35679999999999999999998876432 2    2333334433322  232 456789999999999987766   89


Q ss_pred             HhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------------------cC
Q psy17231         79 YYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------------------LI  130 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------------------~~  130 (189)
                      +++.++++++|||++++  +++..+..|+..+....++.|+++|+||+|+..                          ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            99999999999999997  788888888888876667899999999999421                          23


Q ss_pred             CceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        131 SSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       131 ~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      .+|++|||++ .|++++|+.+++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            3799999999 99999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.7e-27  Score=185.39  Aligned_cols=149  Identities=25%  Similarity=0.394  Sum_probs=128.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...++|+++|++|+|||||++++..+.+...+  .+|++ +.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  229 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  229 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC--CCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCccc--CCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence            34689999999999999999999988875554  55554 3345566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231         86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~  136 (189)
                      +++|||++++.+++.+. .|+..+....+++|+++|+||+|+...                           . .++++|
T Consensus       230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          230 FLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            99999999999999996 788888877678999999999997531                           1 279999


Q ss_pred             eccCCCCHHHHHHHHHHHHHH
Q psy17231        137 SCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      ||++|.|++++|+++.+.+.+
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999998864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=9.6e-28  Score=176.13  Aligned_cols=145  Identities=16%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcccccc-chHHHhcC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGMERVAS-ITSSYYKF   82 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~   82 (189)
                      +.+.+||+++|++|||||||+++|.+..+...+  . +++.+...  +.+++. .+.+.+|||||++++.. ++..+++.
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   78 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--T-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS   78 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBC--C-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccc--C-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence            456899999999999999999999998876544  2 23323333  455543 57899999999999887 78888999


Q ss_pred             CcEEEEEEeCCChh-hHHHHHHHHHHHHHh----CCCCcEEEEeeccccccc----------------------------
Q psy17231         83 AEAAILVFSLDNAA-SFHVLSQHLLEIVTY----AENAKIFLCGNNEQCHNL----------------------------  129 (189)
Q Consensus        83 ~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~----~~~~p~ivv~nK~d~~~~----------------------------  129 (189)
                      ++++++|||+++.+ ++.....|+..+...    ..++|+++|+||+|+...                            
T Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred             CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence            99999999999854 466665554444332    257999999999996422                            


Q ss_pred             ------------------------CCceEEeeccCC------CCHHHHHHHHHHH
Q psy17231        130 ------------------------ISSTYKTSCKTG------EGVEEMFADIGRQ  154 (189)
Q Consensus       130 ------------------------~~~~~~~Sa~~~------~~i~~~~~~i~~~  154 (189)
                                              ..+|++|||++|      .||+++|+++.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                    236999999999      9999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=3.2e-30  Score=188.13  Aligned_cols=147  Identities=24%  Similarity=0.384  Sum_probs=122.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.+..+....  .+|.+ +.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            45799999999999999999999988775443  44443 3334445566667888999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccccC----------------------------CceEEe
Q psy17231         86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNLI----------------------------SSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------------------~~~~~~  136 (189)
                      +++|||++++++++.+. .|+..+....+++|+++|+||+|+....                            .+++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            99999999999999996 8888877765689999999999985421                            178999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q psy17231        137 SCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i  155 (189)
                      ||++|.|++++|+++.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.7e-27  Score=169.56  Aligned_cols=149  Identities=17%  Similarity=0.194  Sum_probs=116.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc
Q psy17231          2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK   81 (189)
Q Consensus         2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   81 (189)
                      +++..+.++|+++|++|||||||+++|.+..+....  .++.+.+.....+..++.  .+.+|||||++++...+...+.
T Consensus         2 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~   77 (178)
T 2lkc_A            2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQ   77 (178)
T ss_dssp             CTTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCC
T ss_pred             CCcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHh
Confidence            356678899999999999999999999998876554  333333444555666664  5789999999999998888899


Q ss_pred             CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEee
Q psy17231         82 FAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTS  137 (189)
Q Consensus        82 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~S  137 (189)
                      .+|++++|+|+++   .++++.+.    .+..  .++|+++|+||+|+...                     ..+++++|
T Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~l~----~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           78 VTDIVILVVAADDGVMPQTVEAIN----HAKA--ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             CCCEEEEEEETTCCCCHHHHHHHH----HHGG--GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             hCCEEEEEEECCCCCcHHHHHHHH----HHHh--CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            9999999999988   44443332    2222  37999999999997531                     02789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        138 CKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      |++|.|++++|+++.+.+...+.
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHhhhhhcc
Confidence            99999999999999998876543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=186.15  Aligned_cols=145  Identities=17%  Similarity=0.367  Sum_probs=115.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+|+|++|||||||+++|.+..+...   .+|++....  .+...  .+.+.+|||||++.+..++..+++.+|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  235 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG  235 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc---ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            3567999999999999999999998876432   345544432  33333  4689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|||++++++|+.+..|+..+....  +++|+++|+||+|+....                  .+++++||++|.||+
T Consensus       236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999999998888876654  589999999999975431                  158999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        146 EMFADIGRQLIL  157 (189)
Q Consensus       146 ~~~~~i~~~i~~  157 (189)
                      ++|++|.+.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=9.6e-27  Score=164.42  Aligned_cols=141  Identities=15%  Similarity=0.202  Sum_probs=106.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY   79 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~   79 (189)
                      |+.++|+++|++|||||||+++|.+..+....  .++.+.+.....+..++  ..+.+|||||++++..      +...+
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~   76 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   76 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHH
Confidence            45789999999999999999999987664433  33333455555555555  5789999999987752      33455


Q ss_pred             hc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCC
Q psy17231         80 YK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~  143 (189)
                      ++  .++++++|+|+++.+.   ...|+..+...  +.|+++|+||+|+...              ..+++++||++|.|
T Consensus        77 ~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           77 IINEKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             HHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             HhcCCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCC
Confidence            54  8999999999998653   44577776654  7999999999886421              23799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQL  155 (189)
Q Consensus       144 i~~~~~~i~~~i  155 (189)
                      ++++|+++.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.95  E-value=5.6e-26  Score=164.26  Aligned_cols=147  Identities=35%  Similarity=0.539  Sum_probs=128.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..++++++|++|||||||++++.+..+...+  .+|++.++....+.+++..+.+.+||++|++++...+..+++.++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            3589999999999999999999998876555  67777788888888899888899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||+++..+++.+..|+..+.... .+.|+++++||+|+...               ...++++||+++.|++++|++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999989998876654 57899999999987532               126899999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.7e-26  Score=164.39  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=109.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS   78 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   78 (189)
                      +.++|+++|++|||||||+++|.+........ .++...+.....+.+++.  .+.+|||||++++...        ...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence            56899999999999999999999876432222 222233555566666664  5799999998764321        123


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHH
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      .++.+|++++|+|++++.+++ ...|+..+.... .++|+++|+||+|+...        ..+++++||++|.|++++|+
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  158 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN  158 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHH
Confidence            578999999999999988876 446777776654 57999999999997432        23789999999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++.+.+.
T Consensus       159 ~l~~~~~  165 (172)
T 2gj8_A          159 HLKQSMG  165 (172)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9987764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=3e-27  Score=178.35  Aligned_cols=150  Identities=16%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             CCCceEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCcccc-eeeeeEEEE--------------EECCe
Q psy17231          5 KVPEQKVILCGEY---------GVGKSSLFRRYAY---DTFISSSSRKSTL-GLDNFNKEY--------------KVDDR   57 (189)
Q Consensus         5 ~~~~~~i~i~G~~---------g~GKTtli~~l~~---~~~~~~~~~~~t~-~~~~~~~~~--------------~~~~~   57 (189)
                      .++.+||+++|.+         |||||||+++|..   ..+...+  .+|+ +.++....+              ..++.
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~--~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDH--TSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCC--CCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCcccccc--CCcccccccceeEeecccccccccccccccCCc
Confidence            3567999999999         9999999999998   4454333  3332 223322211              13456


Q ss_pred             EEEEEEEe-----------------------CCCccccccchHHHhc---------------------CCcEEEEEEeCC
Q psy17231         58 SIQMQLWD-----------------------TGGMERVASITSSYYK---------------------FAEAAILVFSLD   93 (189)
Q Consensus        58 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~   93 (189)
                      .+.+.+||                       ++|+++|..++..+++                     .+|++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       5666666666666666                     799999999999


Q ss_pred             Ch--hhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc--------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231         94 NA--ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus        94 ~~--~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      ++  ++|+.+..|+..+....  .++|+++|+||+|+..              ...+++++||++|.|++++|+++.+.+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            98  99999999999887652  6899999999999642              134899999999999999999998876


Q ss_pred             H
Q psy17231        156 I  156 (189)
Q Consensus       156 ~  156 (189)
                      .
T Consensus       254 ~  254 (255)
T 3c5h_A          254 D  254 (255)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=9.4e-27  Score=179.60  Aligned_cols=146  Identities=17%  Similarity=0.097  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---chHHHhcCCcE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---ITSSYYKFAEA   85 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~   85 (189)
                      ||+++|++|||||||++++.++.+.. .....+|++.++..  +  + ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999987654332 12246777776653  2  2 347899999999999964   46889999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------------------cCCceEEee
Q psy17231         86 AILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------------------LISSTYKTS  137 (189)
Q Consensus        86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~S  137 (189)
                      +++|||++++  ++++.+..|+..+....+++|+++++||+|+..                          ....||+||
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            9999999998  444455555666655567899999999988632                          123789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        138 CKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      |++ .||.++|..+++.+......
T Consensus       156 Akd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             cCC-CcHHHHHHHHHHHHHhhHHH
Confidence            998 69999999999988765443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=2.2e-25  Score=165.29  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=108.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------cc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA---------SI   75 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~   75 (189)
                      ....++|+++|++|||||||+++|.+..+........|.  +.........+  ..+.+|||||+.+..         ..
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  101 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTK--NLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT  101 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcce--eeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH
Confidence            456799999999999999999999988764222111121  22233333333  578999999983211         11


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C--Cce
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I--SST  133 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~--~~~  133 (189)
                      ...++..+|++++|||++++.+|+  ....|+..+....+++|+++|+||+|+...                  .  .++
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            234577889999999999988764  234566666554458999999999986421                  1  478


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      ++|||++|.|++++|+++.+.+.+.+.
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=8.4e-26  Score=174.71  Aligned_cols=147  Identities=19%  Similarity=0.298  Sum_probs=116.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccchHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-----ASITSSYY   80 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   80 (189)
                      ..+||+++|++|||||||++++.++... ....+.+|++.....  +.+.+ .+.+.+||+||++++     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999876322 222446666555443  33434 578999999999988     67888999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCCCcEEEEeecccccc---------------------c---CCce
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLL---EIVTYAENAKIFLCGNNEQCHN---------------------L---ISST  133 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~p~ivv~nK~d~~~---------------------~---~~~~  133 (189)
                      +.+|++++|||++++++++.+..|..   .+....+++|+++|+||+|+..                     .   ..++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877654   4444457899999999999753                     0   1589


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      +++||++ .++.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999998876543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=2.3e-25  Score=160.01  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=111.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc------cchH
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA------SITS   77 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~   77 (189)
                      ..++.++|+++|++|||||||+++|.+..+....  .++...+.....+..++  ..+.+|||||++++.      .++.
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   78 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIAR   78 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHH
Confidence            4567899999999999999999999986653333  23333355555555554  678999999998875      2345


Q ss_pred             HHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCC
Q psy17231         78 SYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTG  141 (189)
Q Consensus        78 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~  141 (189)
                      .++.  .++++++|+|.++   ++....|+..+...  +.|+++|+||+|+...              ..+++++||++|
T Consensus        79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (188)
T 2wjg_A           79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKK  153 (188)
T ss_dssp             HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred             HHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCC
Confidence            5554  5899999999876   45667788777664  7999999999886421              248999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q psy17231        142 EGVEEMFADIGRQLILSN  159 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~~~  159 (189)
                      .|++++|+++.+.+.+..
T Consensus       154 ~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          154 MGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BSHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhcc
Confidence            999999999998876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=4.6e-25  Score=154.42  Aligned_cols=141  Identities=21%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------ccchHHHhc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-------ASITSSYYK   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   81 (189)
                      .||+++|++|+|||||++++.+..+..... .++...+.....+...+.  .+.+||+||+..+       ...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            689999999999999999999887532221 222233444555556554  7899999998873       334566788


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------CC-ceEEeeccCCCCHHHHHHH
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------IS-STYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~~-~~~~~Sa~~~~~i~~~~~~  150 (189)
                      .++++++|+|++++.+..  ..|+...... .+.|+++|+||+|+...          .. +++++||++|.|++++|++
T Consensus        79 ~~~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  155 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEA  155 (161)
T ss_dssp             TCSEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHH
T ss_pred             hCCEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHH
Confidence            999999999999864332  1222222222 37999999999987532          22 7899999999999999999


Q ss_pred             HHHHH
Q psy17231        151 IGRQL  155 (189)
Q Consensus       151 i~~~i  155 (189)
                      +.+.+
T Consensus       156 l~~~l  160 (161)
T 2dyk_A          156 IWERL  160 (161)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=8.5e-26  Score=162.36  Aligned_cols=145  Identities=14%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------ccccccchH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG-----------MERVASITS   77 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~   77 (189)
                      +||+++|++|||||||+++|.+..+.....  ++.  +.....+...    .+.+||+||           ++.+...+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR--PGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS--TTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCC--CCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence            689999999999999999999888765543  332  2223333333    578999999           556666667


Q ss_pred             HHhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHHh--CCCCcEEEEeeccccccc------------CC--
Q psy17231         78 SYYKF-AEAAILVFSLDNAASFHVL-SQHLLE--------IVTY--AENAKIFLCGNNEQCHNL------------IS--  131 (189)
Q Consensus        78 ~~~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~ivv~nK~d~~~~------------~~--  131 (189)
                      .+++. ++++++||++.+..++..+ ..|...        +...  ..++|+++|+||+|+...            ..  
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  153 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL  153 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh
Confidence            77776 8888888888888888777 666642        2221  158999999999997532            11  


Q ss_pred             -----ceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        132 -----STYKTSCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       132 -----~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                           +++++||++|.|++++|+++.+.+.+.+..
T Consensus       154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                 369999999999999999999988765443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=4e-25  Score=159.66  Aligned_cols=143  Identities=17%  Similarity=0.187  Sum_probs=100.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   75 (189)
                      ...++|+++|++|||||||+++|.+..+....  .++.+.+.....+..+.   .+.+|||||          ++.+..+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLART--SSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcccc--CCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            35699999999999999999999988754433  33333344334444443   589999999          5666666


Q ss_pred             hHHHhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceE
Q psy17231         76 TSSYYKFA---EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTY  134 (189)
Q Consensus        76 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~  134 (189)
                      +..+++.+   +++++|+|++++.++.... ++..+..  .+.|+++|+||+|+...                  ..+++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            77777776   9999999999877665542 2222222  37999999999886421                  23789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      ++||++|.|++++|+++.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988763

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.92  E-value=5.6e-24  Score=160.67  Aligned_cols=142  Identities=25%  Similarity=0.215  Sum_probs=107.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch------HHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT------SSY   79 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~   79 (189)
                      ++.++|+++|++|||||||+++|.+..+.....  ++...+.....+...+  ..+.+||+||+..+...+      ..+
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~   78 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDY   78 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHH
Confidence            467899999999999999999999877643332  2222344444444444  688999999998776532      444


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCC
Q psy17231         80 Y--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~  143 (189)
                      +  ..+|++++|+|+++.++.   ..|...+...  ++|+++|+||+|+..              ...+++++||++|.|
T Consensus        79 ~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           79 LLKGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             HhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC
Confidence            4  589999999999987643   3466666554  799999999988632              134899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLI  156 (189)
Q Consensus       144 i~~~~~~i~~~i~  156 (189)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=3.2e-25  Score=183.14  Aligned_cols=149  Identities=21%  Similarity=0.323  Sum_probs=110.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE------E--EECCeEEEEEEEeCCCccccccch
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE------Y--KVDDRSIQMQLWDTGGMERVASIT   76 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~   76 (189)
                      ..+.+||+++|.+|||||||++++.+..+....  .+|++.+.....      +  ..++..+.+.+||+||++.+...+
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~--~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~  115 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKE--SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH  115 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence            356799999999999999999999988876444  667766665432      1  112335789999999999999999


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCC
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG  141 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~  141 (189)
                      ..+++.++++++|||+++.   +.+..|+..+....++.|+++|+||+|+...               ..+++++||++|
T Consensus       116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            9999999999999999765   4667889888888778999999999997432               225999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q psy17231        142 EGVEEMFADIGRQLILS  158 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~~  158 (189)
                      .|++++++++.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999988654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=5.8e-24  Score=153.24  Aligned_cols=140  Identities=20%  Similarity=0.183  Sum_probs=101.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   75 (189)
                      ...++|+++|++|||||||+++|.+..+...   .++.+.+........+.   .+.+||+||          ++.+..+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV---SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC---CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccc---cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            4468999999999999999999998874322   33333333333333333   468999999          5556666


Q ss_pred             hHHHhcCC---cEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCc
Q psy17231         76 TSSYYKFA---EAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISS  132 (189)
Q Consensus        76 ~~~~~~~~---~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~  132 (189)
                      +..+++.+   +++++|+|+++..  ....+..|+..   .  +.|+++|+||+|+...                  ..+
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            66677665   8999999988753  33344444433   2  7999999999996421                  138


Q ss_pred             eEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        133 TYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       133 ~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      ++++||++|.|++++|+++.+.+.
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999998774

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=4.2e-24  Score=161.17  Aligned_cols=137  Identities=12%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----------chHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----------ITSS   78 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~   78 (189)
                      .+|+++|++|||||||+|+|.+..+....  .+++..+.....+..++.  .+.+|||||...+..          +...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHH
Confidence            48999999999999999999988754444  233334555666666664  789999999987753          4455


Q ss_pred             Hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCC
Q psy17231         79 YY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGE  142 (189)
Q Consensus        79 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~  142 (189)
                      ++  ..+|++++|+|+++.+++..+..|+   ...  ++|+++|+||+|+...              ..+++++||++|.
T Consensus        78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           78 SVIDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHHHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTB
T ss_pred             HHhhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence            56  8899999999999977665544443   332  7999999999885321              3489999999999


Q ss_pred             CHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQ  154 (189)
Q Consensus       143 ~i~~~~~~i~~~  154 (189)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998775

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=6.5e-24  Score=161.65  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=105.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI----------   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------   75 (189)
                      |++++|+++|.+|||||||+|+|.+..+....  .+++..+.....+...+  ..+.+|||||+.++...          
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i   76 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQI   76 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHH
Confidence            46799999999999999999999987754433  23333355555555554  46789999999877631          


Q ss_pred             hHHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeecc
Q psy17231         76 TSSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCK  139 (189)
Q Consensus        76 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~  139 (189)
                      ...+  .+.+|++++|+|+++.+....+   ...+...  ++|+++|+||+|+..              ...+++++||+
T Consensus        77 ~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           77 ACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCG
T ss_pred             HHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcC
Confidence            2222  3799999999999987655444   4444444  799999999988542              23589999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGRQLI  156 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~  156 (189)
                      +|.|++++|+++.+.+.
T Consensus       152 ~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GGHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999887654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=1.4e-23  Score=162.27  Aligned_cols=149  Identities=15%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----------c
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----------S   74 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~   74 (189)
                      ..+.-.|+++|.+|||||||+|+|.+..+........+. ........... ....+.+|||||+.++.          .
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT-~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTT-RMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCC-CSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCce-eeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            355678999999999999999999988875433222221 13333333443 13678999999986544          4


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc-c----------------cCCceEEee
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-N----------------LISSTYKTS  137 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-~----------------~~~~~~~~S  137 (189)
                      ....++..+|++++|+|+++..++.....|+..+...  +.|+++|+||+|+. .                ...+++++|
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            5567788999999999999988888887778777764  79999999999975 1                124799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~  157 (189)
                      |++|.|++++|+++.+.+.+
T Consensus       163 A~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          163 ALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHSCB
T ss_pred             CCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999887743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.91  E-value=1.5e-23  Score=159.36  Aligned_cols=140  Identities=15%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc------cchHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA------SITSSYY   80 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   80 (189)
                      ..++|+++|++|||||||+|+|.+........  +  |.+.......+.. ...+.+|||||++.+.      .+...++
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~   76 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW--P--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL   76 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--S--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCC--C--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence            35799999999999999999999876433332  2  2233333334444 4578999999998775      3445555


Q ss_pred             c--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCH
Q psy17231         81 K--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        81 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i  144 (189)
                      .  .+|++++|+|+++.+++   ..|...+...  ++|+++|+||+|+...              ..+++++||++|.|+
T Consensus        77 ~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           77 LSQRADSILNVVDATNLERN---LYLTTQLIET--GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             HTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             hcCCCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCH
Confidence            5  69999999999987644   4566666553  7999999999886421              348999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        145 EEMFADIGRQLI  156 (189)
Q Consensus       145 ~~~~~~i~~~i~  156 (189)
                      +++|+++.+.+.
T Consensus       152 ~el~~~i~~~~~  163 (272)
T 3b1v_A          152 DQVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=2.9e-23  Score=157.81  Aligned_cols=145  Identities=19%  Similarity=0.157  Sum_probs=110.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY   79 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~   79 (189)
                      |+.++|+++|++|||||||+++|.+..+....  .++.+.+.....+.+.+.  .+.+||+||+..+..      ....+
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~   76 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGN--WPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNF   76 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEE--CTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHh
Confidence            46789999999999999999999988764333  334444555666666654  589999999987765      44555


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCC
Q psy17231         80 Y--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~  143 (189)
                      +  ..+|++++|+|+++.+   ....|...+... ...|+++|+||+|+..              ...+++++||++|.|
T Consensus        77 ~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred             hhccCCcEEEEEecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence            5  6899999999998864   334455555554 1399999999988432              234899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy17231        144 VEEMFADIGRQLILS  158 (189)
Q Consensus       144 i~~~~~~i~~~i~~~  158 (189)
                      ++++|+++.+.+...
T Consensus       153 i~~l~~~i~~~~~~~  167 (271)
T 3k53_A          153 VEELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=7.2e-24  Score=163.30  Aligned_cols=150  Identities=19%  Similarity=0.165  Sum_probs=106.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------c
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------V   72 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~   72 (189)
                      |+.. .+..+|+++|.+|||||||+|+|.+..+........|.. +.....+...  ..++.+|||||+.+        +
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~   76 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFM   76 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC--CcEEEEecCccccchhhHHHHHH
Confidence            5654 556789999999999999999999887753322222221 2222233333  46889999999876        3


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHH-HHHHhCCCCcEEEEeeccccccc-------------CCceEEeec
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSC  138 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa  138 (189)
                      ......+++.+|++++|+|++++.+..  ..|+. .+....++.|+++|+||+|+...             ..+++++||
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA  154 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSA  154 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCT
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeC
Confidence            344566788999999999998864432  34543 34333347999999999997531             136799999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q psy17231        139 KTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~  156 (189)
                      ++|.|++++++++.+.+.
T Consensus       155 ~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          155 LDERQVAELKADLLALMP  172 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhcc
Confidence            999999999999887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=9.5e-24  Score=155.60  Aligned_cols=148  Identities=14%  Similarity=0.078  Sum_probs=100.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcc----------cccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGME----------RVAS   74 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~----------~~~~   74 (189)
                      ...++|+++|.+|+|||||+++|.+.......  ..+.+........... .....+.+|||||..          .+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA--SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT--TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceee--cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            44689999999999999999999987632111  1111222222233333 334578999999953          3344


Q ss_pred             chHHHhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------
Q psy17231         75 ITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-----------------------  128 (189)
Q Consensus        75 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-----------------------  128 (189)
                      ....+++.   +|++++|+|+++..+. ....|+..+..  .++|+++|+||+|+..                       
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            44455554   7789999999875332 22344444444  3799999999988632                       


Q ss_pred             -cCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        129 -LISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                       ...+++++||++|.|++++|+++.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             223689999999999999999999887544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=5.2e-23  Score=167.10  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch--------HHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT--------SSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   79 (189)
                      .++|+++|++|+|||||+|+|.+........ .+++..+.....+..++  ..+.+|||||+.++...+        ..+
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            5789999999999999999999875322211 22223355555566665  578999999997765433        335


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +..+|++++|+|++++.+++++..+...+. ...++|+++|+||+|+...            ..+++++||++|.|++++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~-~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKA-AHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHH-HCTTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHH-hcCCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHH
Confidence            788999999999999887754333332222 2237999999999997532            247999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        148 FADIGRQLI  156 (189)
Q Consensus       148 ~~~i~~~i~  156 (189)
                      ++++.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999998886

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=2.8e-23  Score=152.63  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=91.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC-
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF-   82 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   82 (189)
                      +.+.++|+++|++|+|||||+++|.+..+.... ...++.+.++         ....+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            356799999999999999999999988764321 1233332222         34578999999999998888888877 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh-----CCCCcEEEEeecccccc
Q psy17231         83 ---AEAAILVFSLD-NAASFHVLSQHLLEIVTY-----AENAKIFLCGNNEQCHN  128 (189)
Q Consensus        83 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~d~~~  128 (189)
                         ++++++|+|++ +++++..+..|+..+...     ..++|+++|+||+|+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence               89999999999 889999999998888764     25899999999999754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.88  E-value=2.3e-21  Score=152.75  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=111.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------ch
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------IT   76 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~   76 (189)
                      ...++++++|++|||||||+++|.+........+..|.  ..........  ...+.+|||||..+...         ..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTR--GINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSS--CEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeee--ceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHH
Confidence            45689999999999999999999987643322223332  2222333333  35789999999865321         11


Q ss_pred             HHHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCC
Q psy17231         77 SSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTG  141 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~  141 (189)
                      ..+...+|++++|+|+++..  +++....|+..+.....+.|+++|+||+|+..             ...+++++||++|
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence            23445689999999999887  67888889888887655899999999999743             1347999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q psy17231        142 EGVEEMFADIGRQLILSN  159 (189)
Q Consensus       142 ~~i~~~~~~i~~~i~~~~  159 (189)
                      .|++++++++.+.+....
T Consensus       321 ~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999886543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=1.6e-22  Score=163.24  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   76 (189)
                      ..++|+++|.+|||||||+|+|.+........ .+++..+.....+..++.  .+.+|||||+.          .|....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            46899999999999999999999876532211 222233555555666664  58999999983          333332


Q ss_pred             H-HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231         77 S-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK  135 (189)
Q Consensus        77 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~  135 (189)
                      . ..++.+|++++|+|+++..+++.. .|+..+...  ++|+++|+||+|+...                    ..++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            2 477889999999999998877665 576666553  7999999999986421                    237899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      +||++|.|++++|+.+.+.+.+..
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EecccCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.5e-22  Score=163.40  Aligned_cols=144  Identities=17%  Similarity=0.251  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccchHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME--------RVASITSSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~   79 (189)
                      ..+|+++|.+|||||||+|+|.+..+...   .++.|.+..............+.+|||||++        .+......+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee---cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            47899999999999999999998765322   2333434433333343334578999999985        455566778


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++.+|++++|+|+++..++..  .|+..+.+. .++|+++|+||+|+...           ..+++++||++|.|+++++
T Consensus        80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~  156 (436)
T 2hjg_A           80 MDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLL  156 (436)
T ss_dssp             HHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred             HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHH
Confidence            899999999999988655432  344443333 47999999999996431           1378999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++.+.+.+
T Consensus       157 ~~i~~~l~~  165 (436)
T 2hjg_A          157 DAVAEHFKN  165 (436)
T ss_dssp             HHHHHTGGG
T ss_pred             HHHHHhcCc
Confidence            999887753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=2.2e-21  Score=156.68  Aligned_cols=141  Identities=17%  Similarity=0.203  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccchHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV---------ASITSSY   79 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~   79 (189)
                      .+|+++|.+|||||||+|+|.+........ .+.+..+.......+.+.  .+.+|||||++..         ......+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~-~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecC-CCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHH
Confidence            479999999999999999999876432111 333334555666677664  5799999997642         2345667


Q ss_pred             hcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCH
Q psy17231         80 YKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i  144 (189)
                      ++.+|++++|+|+++..+..  .+..|+.   ..  ++|+++|+||+|+...             ..+++++||++|.|+
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~--~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv  153 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDESLADFLR---KS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL  153 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHH---HH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence            89999999999998754432  2333332   22  7999999999996321             126899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy17231        145 EEMFADIGRQLIL  157 (189)
Q Consensus       145 ~~~~~~i~~~i~~  157 (189)
                      +++++++.+.+.+
T Consensus       154 ~~L~~~i~~~l~~  166 (439)
T 1mky_A          154 DTMLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999999988864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=7.6e-21  Score=152.00  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-cccee------------eeeEEEEEE---CCeEEEEEEEeCCC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRK-STLGL------------DNFNKEYKV---DDRSIQMQLWDTGG   68 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~-~t~~~------------~~~~~~~~~---~~~~~~~~i~D~~g   68 (189)
                      ..+.++|+++|.+|+|||||+++|.+.......... .+.+.            +........   ......+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            467899999999999999999999865432111000 00000            000000000   11236899999999


Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------  129 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------  129 (189)
                      +++|.......+..+|++++|+|+++..++.+...|+..+.... ..|+++|+||+|+...                   
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~  163 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA  163 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence            99999988899999999999999998876777777777665552 4699999999886321                   


Q ss_pred             -CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 -ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 -~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                       ..+++++||++|.|++++++++.+.+..
T Consensus       164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          164 ENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence             2379999999999999999999887643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=7.6e-22  Score=160.44  Aligned_cols=142  Identities=20%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-cccc--------chHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-RVAS--------ITSS   78 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~   78 (189)
                      .++|+++|.+|+|||||+|+|.+........ .+.+..+.....+.+++  ..+.+|||||.. ++..        ....
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            3799999999999999999999876432222 22223355556666665  468999999987 5542        2346


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHH
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +++.+|++++|+|++++.+++... ++..+    .++|+++|+||+|+...            ..+++++||++|.|+++
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~e  394 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK  394 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHH
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHH
Confidence            788999999999999887775543 22222    37999999999998532            13799999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        147 MFADIGRQLIL  157 (189)
Q Consensus       147 ~~~~i~~~i~~  157 (189)
                      +++++.+.+..
T Consensus       395 L~~~l~~~~~~  405 (482)
T 1xzp_A          395 LEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=1.1e-21  Score=159.09  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=107.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI   75 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   75 (189)
                      ...++|+++|.+|+|||||+++|.+........ .+++..+.....+..++.  .+.+|||||          ++.|...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            457899999999999999999999765321111 223333544555666664  789999999          5555554


Q ss_pred             hH-HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceE
Q psy17231         76 TS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTY  134 (189)
Q Consensus        76 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~  134 (189)
                      .. .+++.+|++++|+|+++... +....|...+..  .++|+++|+||+|+...                    ..+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            44 36789999999999987543 233445555544  37999999999997431                    24899


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      ++||++|.|++++|+++.+.+.+...
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998866543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.86  E-value=1.4e-21  Score=158.12  Aligned_cols=143  Identities=17%  Similarity=0.189  Sum_probs=97.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH--------HH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS--------SY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~   79 (189)
                      .++|+++|++|+|||||+|+|.+..+..... .++...+.....+.+++  ..+.+|||||+.++.....        ..
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            5789999999999999999998865432222 22223344445566666  4679999999876544332        25


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +..+|++++|+|++++.+... ..|+..+    ...|+++|+||+|+...           ..+++++||++|.|+++++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~  375 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLE  375 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHH
Confidence            678999999999998766544 3444433    25899999999997532           2378999999999999999


Q ss_pred             HHHHHHHHHh
Q psy17231        149 ADIGRQLILS  158 (189)
Q Consensus       149 ~~i~~~i~~~  158 (189)
                      +++.+.+...
T Consensus       376 ~~i~~~~~~~  385 (462)
T 3geh_A          376 TAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcc
Confidence            9999887543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.6e-21  Score=139.39  Aligned_cols=130  Identities=15%  Similarity=0.237  Sum_probs=95.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC--
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF--   82 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   82 (189)
                      .+.++|+++|++|||||||+++|.+..+.... ...++.+.+         .....+.+||+||++.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            45789999999999999999999988764311 112222111         123578999999999988877777766  


Q ss_pred             --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231         83 --AEAAILVFSLD-NAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus        83 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                        ++++++|||++ +++++..+..|+..+....     .+.|+++|+||+|+...            ..++++.+.+.+.
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~l~~~  184 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA------------RPPSKIKDALESE  184 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC------------CCHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC------------CCHHHHHHHHHHH
Confidence              89999999999 8999999999988876542     47999999999998653            2455656555544


Q ss_pred             HH
Q psy17231        155 LI  156 (189)
Q Consensus       155 i~  156 (189)
                      +.
T Consensus       185 l~  186 (193)
T 2ged_A          185 IQ  186 (193)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.86  E-value=5e-22  Score=155.22  Aligned_cols=147  Identities=17%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHHhc---
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSYYK---   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---   81 (189)
                      .+|+++|.+|||||||+++|..........+..|.  ......+.+++ ...+.+||+||+.+    +..+...+++   
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl--~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTL--VPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCC--CCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCcccc--CceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            36889999999999999999877643333223333  22233344443 24789999999643    3334444544   


Q ss_pred             CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-----------C--CceEEeeccCCC
Q psy17231         82 FAEAAILVFSLDN---AASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-----------I--SSTYKTSCKTGE  142 (189)
Q Consensus        82 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-----------~--~~~~~~Sa~~~~  142 (189)
                      .++++++|+|+++   +++++.+..|+..+..+.   .++|+++|+||+|+...           .  .+++++||+++.
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE  315 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence            5999999999998   788999999999988764   47999999999996421           1  378999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy17231        143 GVEEMFADIGRQLILS  158 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~  158 (189)
                      |++++++++.+.+.+.
T Consensus       316 gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          316 GLRELLFEVANQLENT  331 (342)
T ss_dssp             TTHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHhhC
Confidence            9999999999888543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=6.5e-21  Score=143.86  Aligned_cols=151  Identities=17%  Similarity=0.077  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch--------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT--------   76 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------   76 (189)
                      .+.++|+|+|++|||||||+++|.+... .....+.+ +..........+.+  ..+.+|||||+.++....        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT-LTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCC-CCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-eeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            4578999999999999999999998763 32222111 22234444455554  478999999987654322        


Q ss_pred             ---HHHhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEee-ccccccc---------------------C
Q psy17231         77 ---SSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGN-NEQCHNL---------------------I  130 (189)
Q Consensus        77 ---~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~n-K~d~~~~---------------------~  130 (189)
                         ...++.+|++++|+|+++... ...+..|+..+.......|.++++| |+|+...                     .
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence               226688999999999986222 2223344444332212356666666 9987431                     0


Q ss_pred             Cc---e--EEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        131 SS---T--YKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       131 ~~---~--~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      ..   +  +++||++|.|++++|+++.+.+....
T Consensus       177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            11   2  78999999999999999999887643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.86  E-value=5.1e-22  Score=158.98  Aligned_cols=145  Identities=16%  Similarity=0.123  Sum_probs=104.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-------hHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-------TSS   78 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~   78 (189)
                      ...++|+++|.+|+|||||+++|.+..+..... .+....+.....+...+. ..+.+|||||+.++..+       ...
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~-~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSD-YAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCC-CCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            347899999999999999999999877532221 222223555555665553 37899999999887654       345


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHH
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~  145 (189)
                      ++..+|++++|+|+...+   ....|+..+...  ++|+++|+||+|+...             ..+++++||++|.|++
T Consensus       110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~  184 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD  184 (423)
T ss_dssp             HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred             HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence            788999999999993333   345677766666  7999999999886432             2388999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        146 EMFADIGRQLIL  157 (189)
Q Consensus       146 ~~~~~i~~~i~~  157 (189)
                      ++|+++.+.+.+
T Consensus       185 eL~~~L~~~l~~  196 (423)
T 3qq5_A          185 DIGKTISEILPG  196 (423)
T ss_dssp             THHHHHHHHSCC
T ss_pred             HHHHHHHHhhhh
Confidence            999999988843

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.85  E-value=3.2e-21  Score=160.19  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=102.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC--C---------CCCCCCcccceeeeeEE--EEEE---CCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT--F---------ISSSSRKSTLGLDNFNK--EYKV---DDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~---------~~~~~~~~t~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~   70 (189)
                      +..+|+|+|+.++|||||+++|....  +         .+..+.+.+.|.++...  .+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45789999999999999999997521  1         11111112223333322  2222   4556899999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceE
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTY  134 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~  134 (189)
                      +|...+...++.+|++++|+|+++..+.+....|.....   .++|+|+|+||+|+...                ..+++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi  159 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV  159 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence            999988999999999999999998776667766765443   27999999999997542                11589


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      ++||++|.|++++++++.+.+..
T Consensus       160 ~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          160 RCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             EECTTTCTTHHHHHHHHHHHSCC
T ss_pred             EeecccCCCchhHHHHHhhcCCC
Confidence            99999999999999999887754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=8.8e-22  Score=159.72  Aligned_cols=146  Identities=17%  Similarity=0.258  Sum_probs=99.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC--------ccccccch
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG--------MERVASIT   76 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~   76 (189)
                      .|...+|+|+|.+|||||||+|+|.+..+...   ..+.|.+..............+.+|||||        ++++....
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCccc---CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            46678999999999999999999998765322   23344455554445544456889999999        55666677


Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHH
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~  145 (189)
                      ..+++.+|++++|+|..+.-  .....|+....+. .++|+++|+||+|+...           ....+++||++|.|+.
T Consensus        97 ~~~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~  173 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGV--TAADEEVAKILYR-TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLG  173 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT-CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred             HhhHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH-cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchH
Confidence            88889999999999987632  2333444444443 48999999999986432           1256899999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        146 EMFADIGRQLI  156 (189)
Q Consensus       146 ~~~~~i~~~i~  156 (189)
                      ++++.+.+.+.
T Consensus       174 ~L~~~i~~~l~  184 (456)
T 4dcu_A          174 DLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHTTGG
T ss_pred             HHHHHHHhhcc
Confidence            99999887654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=9.4e-21  Score=148.56  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=89.0

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      .+.+.+||++|++.+...|..++++++++|+|||+++          ..++++...|+..+....  .+.|+|+++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4789999999999999999999999999999999998          567999999999888743  6899999999988


Q ss_pred             ccc-----------------------------------------cCCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        126 CHN-----------------------------------------LISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       126 ~~~-----------------------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                      +..                                         ....+++|||+++.||+++|+++.+.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            731                                         1125789999999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=9.1e-21  Score=157.26  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=105.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC--CC---------CCCCCcccceeeee--EEEEEE---CCeEEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT--FI---------SSSSRKSTLGLDNF--NKEYKV---DDRSIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~~---------~~~~~~~t~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~   70 (189)
                      +..+|+++|..++|||||+++|....  +.         +....+.+.|.++.  ...+.+   ++..+.+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            35799999999999999999997521  11         11111111122221  112222   4556899999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceE
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTY  134 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~  134 (189)
                      +|.......++.+|++++|+|+++..+.+....|.....   .++|+|+|+||+|+....                .+++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi  161 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI  161 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence            999888889999999999999999877777777765443   379999999999975321                1489


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      ++||++|.|++++++++.+.+..
T Consensus       162 ~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          162 LASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             EEEeecCCCchHHHHHHHHhccc
Confidence            99999999999999999887754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.85  E-value=1.1e-20  Score=154.12  Aligned_cols=144  Identities=19%  Similarity=0.169  Sum_probs=104.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDT-------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI   75 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   75 (189)
                      ...++.++|+++|..++|||||+++|.+..       ...+..+..|+  +.....+.+++  ..+.+||+||+++|...
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi--~~~~~~~~~~~--~~i~iiDtPGh~~~~~~   89 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITI--DIGFSAFKLEN--YRITLVDAPGHADLIRA   89 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETT--EEEEECCCSSHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEE--ecceEEEEECC--EEEEEEECCChHHHHHH
Confidence            345678999999999999999999998765       22222222232  22222344444  57899999999999888


Q ss_pred             hHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CC
Q psy17231         76 TSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------IS  131 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~  131 (189)
                      ....+..+|++++|+|+++   +++++.+.    .+..  .++|+++|+||+|+...                     ..
T Consensus        90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~  163 (482)
T 1wb1_A           90 VVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS  163 (482)
T ss_dssp             HHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred             HHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence            8888999999999999987   45554443    2222  27899999999886320                     24


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      +++++||++|.|++++++++.+.+.
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhc
Confidence            7999999999999999999998875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=5e-21  Score=159.10  Aligned_cols=147  Identities=17%  Similarity=0.198  Sum_probs=105.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CcccceeeeeEEEE------------EECCeEEEEEEEeCCCcc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS--RKSTLGLDNFNKEY------------KVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~t~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~   70 (189)
                      +++.++|+++|++++|||||+++|.+..+.....  ..++++..+.....            ..+.....+.+|||||++
T Consensus         2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            3567899999999999999999998765432211  11222222211100            000011258999999999


Q ss_pred             ccccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231         71 RVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------  129 (189)
Q Consensus        71 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------  129 (189)
                      +|..++...++.+|++++|+|+++   +++++.+..    +..  .++|+++++||+|+.+.                  
T Consensus        82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            999988888999999999999998   777765542    222  37999999999998531                  


Q ss_pred             -----------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 -----------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 -----------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                                                         ..+++.+||++|.|++++++++...+..
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                                               0168999999999999999999887753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=5.1e-20  Score=145.12  Aligned_cols=148  Identities=18%  Similarity=0.091  Sum_probs=103.2

Q ss_pred             ceE-EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc---------cccchH
Q psy17231          8 EQK-VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER---------VASITS   77 (189)
Q Consensus         8 ~~~-i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~   77 (189)
                      .++ |+++|++|+|||||+|+|.+..+.....+..|.  +.....+.+++  ..+.+|||+|...         |...+ 
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-  252 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-  252 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence            355 889999999999999999987764444334443  45555666766  4679999999732         11122 


Q ss_pred             HHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc-----------------C--CceEE
Q psy17231         78 SYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-----------------I--SSTYK  135 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-----------------~--~~~~~  135 (189)
                      ..+..+|++++|+|++++.  ..+.+..|...+.... .+.|+|+|+||+|+...                 .  .++++
T Consensus       253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            2467899999999999876  5666666666555543 57999999999987421                 1  15789


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      +||++|.|++++++++.+.+.....
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             EECCCCcCHHHHHHHHHHHhcccCC
Confidence            9999999999999999887765543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=3e-22  Score=164.24  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=106.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ++++|+++|++|+|||||+++|.+..+....  .+++..++....+...+ ...+.+|||||++.|..++...+..+|++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~v   79 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIV   79 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence            5688999999999999999999876654433  22222233333333322 23689999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCCCCHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~~~i~  145 (189)
                      ++|+|+++....+... ++..+..  .++|+++|+||+|+...                     ..+++++||++|.|++
T Consensus        80 ILVVDa~dg~~~qt~e-~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           80 ILVVAADDGVMKQTVE-SIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EEECBSSSCCCHHHHH-HHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            9999999865443332 2333333  37999999999997531                     1268999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        146 EMFADIGRQLI  156 (189)
Q Consensus       146 ~~~~~i~~~i~  156 (189)
                      ++++++...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999987664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=7.6e-20  Score=147.71  Aligned_cols=146  Identities=18%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-----------   75 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   75 (189)
                      ..++++++|++|||||||+|+|.+........ .++...+.....+.+++.  .+.+|||+|..+....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            45899999999999999999999876421111 222223445556667765  5789999997543221           


Q ss_pred             -hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceE
Q psy17231         76 -TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTY  134 (189)
Q Consensus        76 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~  134 (189)
                       ....++.++++++|+|+++..+.... .+...+..  .++|+++|+||+|+...                    ..+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             13456789999999999876555432 22222222  37999999999986421                    23789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998877654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.84  E-value=1.4e-20  Score=153.71  Aligned_cols=142  Identities=17%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCeE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDRS   58 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~~   58 (189)
                      .+.+||+++|.+|+|||||+++|......                           +........|.++......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            56799999999999999999999754110                           011111111333333333343445


Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHH-----HHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-----LSQHLLEIVTYAENAKIFLCGNNEQCHNL----  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----  129 (189)
                      ..+.+|||||+++|.......+..+|++++|+|+++..++..     ...++..+.......|+|+|+||+|+...    
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            689999999999999988999999999999999998754322     12222222232234679999999997541    


Q ss_pred             --------------------CCceEEeeccCCCCHHHH
Q psy17231        130 --------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       130 --------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                                          ..+++++||++|.|++++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence                                237899999999999853

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.83  E-value=9.8e-20  Score=145.78  Aligned_cols=147  Identities=16%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEE-------------C--C----eEEEEE
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKV-------------D--D----RSIQMQ   62 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~-------------~--~----~~~~~~   62 (189)
                      ..+.++|+++|..++|||||+++|.+..   +..+..+.-|+...+....+..             .  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998432   2222222224433333222211             1  1    136899


Q ss_pred             EEeCCCccccccchHHHhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         63 LWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +||+||+++|.......+..+|++++|+|+++    +++++.+..|    . .....|+++|+||+|+...         
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            99999999887766666778899999999985    4555544332    2 2224689999999886431         


Q ss_pred             -----------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 -----------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 -----------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                 ..+++++||++|.|++++++++.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence                       237899999999999999999987664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=7e-20  Score=147.80  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=96.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCC--CCcccceeeeeEEEEEEC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSS--SRKSTLGLDNFNKEYKVD   55 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~--~~~~t~~~~~~~~~~~~~   55 (189)
                      ..+.++|+++|.+++|||||+++|....-.                           +..  .+.+.+..+.....+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            356799999999999999999999543110                           000  011222223333333333


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhCCCCc-EEEEeecccccc
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---FH---VLSQHLLEIVTYAENAK-IFLCGNNEQCHN  128 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~  128 (189)
                        ...+.+|||||+++|.......+..+|++++|+|+++...   |+   +....+..+..  .++| +|+|+||+|+..
T Consensus        94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence              4589999999999998888888999999999999987532   21   22222222222  2566 999999999732


Q ss_pred             c---------------------------CCceEEeeccCCCCHHHHHH
Q psy17231        129 L---------------------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus       129 ~---------------------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      .                           ..+++++||++|.|++++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            0                           12689999999999999765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=6.1e-21  Score=156.77  Aligned_cols=116  Identities=10%  Similarity=0.044  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCC------------------CCCCCC--cccceeeeeEEEEEECCeEEEEEEEeC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTF------------------ISSSSR--KSTLGLDNFNKEYKVDDRSIQMQLWDT   66 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~------------------~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~   66 (189)
                      +..+|+|+|.+|+|||||+++|....-                  .+....  ...+........+.+.  .+.+++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence            457999999999999999999962110                  000000  0111112222233343  468899999


Q ss_pred             CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ||+.+|.......++.+|++++|+|+++.........|. .+...  ++|+++|+||+|+.
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl~  147 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDRD  147 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTSC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCCc
Confidence            999999999999999999999999999876665555443 33333  79999999998864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.83  E-value=1.1e-19  Score=140.85  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      .+.+++||++|++.++..|..++++++++++|||++          +.+++++...|+..+....  .+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            378999999999999999999999999999999664          6778888888888887653  6899999999988


Q ss_pred             cccc-----------------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        126 CHNL-----------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       126 ~~~~-----------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      +...                                         ...+++|||+++.||+++|+.+.+.+++..-
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            5321                                         1146889999999999999999999987653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.82  E-value=2.2e-19  Score=143.81  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=102.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEE-------------C--C----eEEEEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKV-------------D--D----RSIQMQL   63 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~-------------~--~----~~~~~~i   63 (189)
                      .+.++|+++|..++|||||+++|.+..   +..+..+.-|+...+....+..             .  +    ....+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            556899999999999999999998432   2222222224433332222211             0  1    1368999


Q ss_pred             EeCCCccccccchHHHhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------
Q psy17231         64 WDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-----------  128 (189)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-----------  128 (189)
                      ||+||+++|.......+..+|++++|+|+++    +++.+.+..|    ... ...|+++|+||+|+..           
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            9999999887766667778899999999985    4455544332    222 2468999999988642           


Q ss_pred             ---------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        129 ---------LISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                               ...+++++||++|.|++++++++.+.+.
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence                     1237999999999999999999887664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=1.8e-19  Score=134.39  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=95.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-----------ccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-----------VAS   74 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~   74 (189)
                      ...++|+++|++|||||||+|+|.+..+.....+..++..........+.+  ..+.+|||||..+           +..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            456999999999999999999999888755443222333344455555655  4779999999543           223


Q ss_pred             chHHHhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CC
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------IS  131 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~  131 (189)
                      .....++.++++++|+|+++...  ...+..+...+... ...|+++|+||+|+...                     ..
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~  183 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD  183 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence            33445567899999999875432  22222222222111 24799999999886321                     12


Q ss_pred             ceEEeeccCC-----CCHHHHHHHHHHHHHHh
Q psy17231        132 STYKTSCKTG-----EGVEEMFADIGRQLILS  158 (189)
Q Consensus       132 ~~~~~Sa~~~-----~~i~~~~~~i~~~i~~~  158 (189)
                      .|+.+++..+     .++.++|+.+.+.+.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          184 RYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            5666666543     68899999887777654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.82  E-value=3.7e-20  Score=142.66  Aligned_cols=145  Identities=19%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-c--------cccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-R--------VASI   75 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~   75 (189)
                      ..+..+|+++|++|+|||||+|+|.+..+........+. .......+..+  ...+.+|||||+. .        +...
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT-r~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~   81 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-RHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKA   81 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC-SSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcc-eeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHH
Confidence            345568999999999999999999987653222111121 12222233333  3578999999987 2        3333


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--c-------------C-CceEEeecc
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--L-------------I-SSTYKTSCK  139 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--~-------------~-~~~~~~Sa~  139 (189)
                      ....++.+|++++|+|+++   +.....|+...... .+.|+++++||.|+..  .             . ..++++||+
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            4556778899999999976   33334455443332 3799999999998754  1             1 258999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy17231        140 TGEGVEEMFADIGRQLI  156 (189)
Q Consensus       140 ~~~~i~~~~~~i~~~i~  156 (189)
                      +|.|++++++.+.+.+.
T Consensus       158 ~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999887543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=1.5e-19  Score=141.76  Aligned_cols=103  Identities=15%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeecc
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNE  124 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~  124 (189)
                      ..+.+++|||+|++.+...|..++++++++++|||++          +.++|++...|+..+....  ++.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          7889999999999887653  689999999998


Q ss_pred             ccccc--------------------------------------------------CC--ceEEeeccCCCCHHHHHHHHH
Q psy17231        125 QCHNL--------------------------------------------------IS--STYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus       125 d~~~~--------------------------------------------------~~--~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |+...                                                  ..  .+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            86210                                                  01  258999999999999999999


Q ss_pred             HHHHHhh
Q psy17231        153 RQLILSN  159 (189)
Q Consensus       153 ~~i~~~~  159 (189)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=8.1e-20  Score=142.02  Aligned_cols=100  Identities=20%  Similarity=0.221  Sum_probs=87.8

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ  125 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d  125 (189)
                      .+.+++||++|++.++..|..++++++++++|||++          +.+++.+...|+..+....  .+.|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            478999999999999999999999999999999998          7888999989998887753  6899999999988


Q ss_pred             cccc---------------------------------------------------------CCceEEeeccCCCCHHHHH
Q psy17231        126 CHNL---------------------------------------------------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       126 ~~~~---------------------------------------------------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +...                                                         ...+++|||++..||+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            5320                                                         1246889999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +.+.+.+++
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999987

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=3.3e-20  Score=148.40  Aligned_cols=136  Identities=15%  Similarity=0.085  Sum_probs=96.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC--------CCCC-----CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD--------TFIS-----SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--------~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ..+.++|+++|.+++|||||+++|...        .+..     ......+.|.++......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999863        1110     000011223333333334433346789999999999


Q ss_pred             cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231         72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------  129 (189)
Q Consensus        72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------  129 (189)
                      |.......+..+|++++|+|+++... .+...|+..+...  ++| +++++||+|+...                     
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            98888888999999999999987643 3445566555544  688 8999999997520                     


Q ss_pred             --CCceEEeeccCCCC
Q psy17231        130 --ISSTYKTSCKTGEG  143 (189)
Q Consensus       130 --~~~~~~~Sa~~~~~  143 (189)
                        ..+++++||++|.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence              14799999999987

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.82  E-value=3.7e-20  Score=140.90  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-------   72 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------   72 (189)
                      ...++|+++|.+|+|||||+|+|..........      ..+|++.+.....+..++..+.+.+|||||..+.       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            346899999999999999999987665433321      1455555655555555565679999999997432       


Q ss_pred             ccch-------HHHhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231         73 ASIT-------SSYYK-------------FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----  128 (189)
Q Consensus        73 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----  128 (189)
                      ..+.       ..++.             .+|+++++++.++......-..++..+..   ++|+|+|+||+|+..    
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence            1111       22222             26788888876653211122233333333   799999999988531    


Q ss_pred             -------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        129 -------------LISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                   ...+++.+||+++.|++++++++.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence                         123788999999999999998887654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=9.3e-21  Score=154.25  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+..+|+++|++++|||||+++|....+.....+..|.  +.....+.+++  ..+.+|||||++.|...+...+..+|+
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~--~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~   77 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQ--HIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDI   77 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCC--CSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeE--eEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence            46789999999999999999999876554332212222  22222222333  467999999999999988888999999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231         86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG  141 (189)
Q Consensus        86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~  141 (189)
                      +++|+|+++   +++.+.+    ..+..  .++|+++++||+|+...                     ..+++++||++|
T Consensus        78 aILVVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           78 VVLVVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEEEEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EEEEeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            999999987   4444333    22222  37999999999987421                     026899999999


Q ss_pred             CCHHHHHHHHHH
Q psy17231        142 EGVEEMFADIGR  153 (189)
Q Consensus       142 ~~i~~~~~~i~~  153 (189)
                      .|++++|+++..
T Consensus       152 ~gI~eLle~I~~  163 (501)
T 1zo1_I          152 TGIDELLDAILL  163 (501)
T ss_dssp             TTCTTHHHHTTT
T ss_pred             cCcchhhhhhhh
Confidence            999999999864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.80  E-value=4.4e-21  Score=154.76  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=96.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCcccceeeeeEEEEE
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISS-----------------------------SSRKSTLGLDNFNKEYK   53 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~   53 (189)
                      +++.++|+++|.+++|||||+++|...  .+...                             ..+..|+  +...  ..
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi--~~~~--~~   78 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTI--NLTF--MR   78 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC---------------CE
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCcee--EeeE--EE
Confidence            356799999999999999999999764  22110                             0011122  2211  22


Q ss_pred             ECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CC-CcEEEEeeccccc
Q psy17231         54 VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN-AKIFLCGNNEQCH  127 (189)
Q Consensus        54 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~-~p~ivv~nK~d~~  127 (189)
                      +......+.+|||||+++|.......+..+|++++|+|+++ .+|+....|..+..+..     .+ .|+++++||+|+.
T Consensus        79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence            23334679999999999998888888999999999999998 67775544333322221     24 4699999999975


Q ss_pred             cc--------------------------CCceEEeeccCCCCHHHHHH
Q psy17231        128 NL--------------------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus       128 ~~--------------------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ..                          ..+++++||++|.|+.++++
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            41                          13699999999999986654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.80  E-value=1.1e-19  Score=145.12  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC-------CCC-----CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT-------FIS-----SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~-------~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   74 (189)
                      +.++|+++|.+++|||||+++|....       +..     ........+.+.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            57899999999999999999998631       110     000011122222223333433346789999999999887


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeecccccc--------------------c---C
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHN--------------------L---I  130 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~--------------------~---~  130 (189)
                      .....+..+|++++|+|+++....+ ...++..+...  ++| +++++||+|+..                    .   .
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            7778889999999999998854322 22333333333  688 789999999752                    0   1


Q ss_pred             CceEEeeccCCCC----------HHHHHHHHHHHHH
Q psy17231        131 SSTYKTSCKTGEG----------VEEMFADIGRQLI  156 (189)
Q Consensus       131 ~~~~~~Sa~~~~~----------i~~~~~~i~~~i~  156 (189)
                      .+++++||++|.|          ++++++.+.+.+.
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            3889999999765          8888888776554

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.80  E-value=3.2e-19  Score=140.89  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      +|+++|.+++|||||+++|.        .+..|++  ...  ..+......+.+|||||+++|.......+..+|++++|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~--~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSD--ITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESS--SEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEE--eeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence            89999999999999999998        1122332  222  22333345789999999999987777788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEee-ccccccc--------------------CCceEE--eeccC---CC
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN-NEQCHNL--------------------ISSTYK--TSCKT---GE  142 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~d~~~~--------------------~~~~~~--~Sa~~---~~  142 (189)
                      +| + ...+.+...++..+...  ++|. |+++| |+|+ ..                    ..++++  +||++   +.
T Consensus        91 vd-~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           91 IP-P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             EC-T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             Ec-C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            99 4 33445566666655554  6777 88999 9996 21                    137899  99999   99


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy17231        143 GVEEMFADIGRQLILS  158 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~  158 (189)
                      |++++++.+.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999998887654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.79  E-value=5.9e-20  Score=144.77  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCC-CC------CcccceeeeeEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISS-SS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-------ERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~-~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   72 (189)
                      ..++|+++|++|+|||||+++|.+...... ..      ..+|++.......+...+....+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            468999999999999999999875433221 11      1245444444444444566678999999998       556


Q ss_pred             ccchH-------HHhcCCc-----------EEEEEEeCCC-hhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231         73 ASITS-------SYYKFAE-----------AAILVFSLDN-AASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN----  128 (189)
Q Consensus        73 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~----  128 (189)
                      ..+..       .+++.++           +.+++|++++ ..++..+. .|+..+   ..++|+|+|+||+|+..    
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev  192 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER  192 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence            66654       5554433           2346666665 45555554 344333   25799999999988632    


Q ss_pred             -------------cCCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        129 -------------LISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                                   ...+++++||++|.+ ++.|.++.+.+.+..
T Consensus       193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence                         134889999999999 889999888886543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=2.4e-19  Score=137.60  Aligned_cols=147  Identities=15%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----Ccccc-----------------e---eee--------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS----RKSTL-----------------G---LDN--------------   47 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~----~~~t~-----------------~---~~~--------------   47 (189)
                      ...++|+++|.+|||||||+|+|.+..+.+...    ..++.                 |   .++              
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            456799999999999999999999887642210    11210                 0   000              


Q ss_pred             ---------eEEEEEEC-CeEEEEEEEeCCCccc-------------cccchHHHhcCCcEEE-EEEeCCChhhHHHHHH
Q psy17231         48 ---------FNKEYKVD-DRSIQMQLWDTGGMER-------------VASITSSYYKFAEAAI-LVFSLDNAASFHVLSQ  103 (189)
Q Consensus        48 ---------~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~  103 (189)
                               ....+... .....+.+|||||...             +......+++.++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                     00000000 0024789999999642             3345566777888766 6999987544333333


Q ss_pred             HHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        104 HLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       104 ~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      ++..+..  .+.|+++|+||+|+...                  ..+++++||++|.|++++++++.+.
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            4444332  37999999999886421                  1256789999999999999998773

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.79  E-value=3.5e-19  Score=143.65  Aligned_cols=142  Identities=16%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCC---CCC-------CCCcccc-------------------eeeeeEEEEEECC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTF---ISS-------SSRKSTL-------------------GLDNFNKEYKVDD   56 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~---~~~-------~~~~~t~-------------------~~~~~~~~~~~~~   56 (189)
                      .+.++|+++|.+++|||||+++|.....   ...       .....+.                   |.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3458999999999999999999976531   000       0000110                   1111112222223


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------  128 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------  128 (189)
                      ....+.+|||||+++|.......+..+|++++|+|+++... .+...++..+... ...|+++|+||+|+..        
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence            34678999999999998888888999999999999988542 2334444443333 2246999999999753        


Q ss_pred             -----------cC-----CceEEeeccCCCCHHHHHH
Q psy17231        129 -----------LI-----SSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus       129 -----------~~-----~~~~~~Sa~~~~~i~~~~~  149 (189)
                                 ..     .+++++||++|.|++++++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence                       11     3689999999999998543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=2.7e-18  Score=129.78  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=84.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc---
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK---   81 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---   81 (189)
                      .++.++|+++|.+|+|||||+++|.+..+.......++ ........+..++  ..+.+|||||+.++......+++   
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~  109 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIK  109 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHH
Confidence            35789999999999999999999998775333322222 1233334445554  48899999999888765544443   


Q ss_pred             ------CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC-C--CCcEEEEeecccccc
Q psy17231         82 ------FAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-E--NAKIFLCGNNEQCHN  128 (189)
Q Consensus        82 ------~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~--~~p~ivv~nK~d~~~  128 (189)
                            .++++++|++++... +... ..|+..+.... .  ..|+++|+||+|+..
T Consensus       110 ~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          110 GFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                  789999999998755 4333 46666666543 2  259999999999853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.78  E-value=3.3e-18  Score=144.84  Aligned_cols=151  Identities=13%  Similarity=0.141  Sum_probs=105.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------EEEEEE--------------------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------NKEYKV--------------------------   54 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------~~~~~~--------------------------   54 (189)
                      ..++|+|+|.+|+|||||+|+|.+..+.+......|......      ..+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            568999999999999999999998775443322222100000      001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccc---cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q psy17231         55 --------------------DDRS--IQMQLWDTGGMER---VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV  109 (189)
Q Consensus        55 --------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  109 (189)
                                          ....  ..+.+|||||...   .......++..+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                0000  2589999999765   33455677889999999999998877777766654443


Q ss_pred             HhCCCCcEEEEeeccccccc--------------------------------------CCceEEeecc------------
Q psy17231        110 TYAENAKIFLCGNNEQCHNL--------------------------------------ISSTYKTSCK------------  139 (189)
Q Consensus       110 ~~~~~~p~ivv~nK~d~~~~--------------------------------------~~~~~~~Sa~------------  139 (189)
                      ..  +.|+++|+||+|+...                                      ..+++.|||+            
T Consensus       228 ~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~  305 (695)
T 2j69_A          228 GR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA  305 (695)
T ss_dssp             TS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred             hh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence            32  6899999999986321                                      1268999999            


Q ss_pred             --CCCCHHHHHHHHHHHHHHhh
Q psy17231        140 --TGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       140 --~~~~i~~~~~~i~~~i~~~~  159 (189)
                        ++.|++++++++.+.+....
T Consensus       306 ~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          306 DLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhhccCHHHHHHHHHHHHHHhH
Confidence              99999999999988775543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.77  E-value=1.3e-19  Score=146.95  Aligned_cols=137  Identities=17%  Similarity=0.153  Sum_probs=94.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCcccceeeeeEEEEE
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISS-----------------------------SSRKSTLGLDNFNKEYK   53 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~   53 (189)
                      +++.++|+++|.+++|||||+++|...  .+...                             ..+..|+  +.....+.
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi--~~~~~~~~   81 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI--DIALWKFE   81 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCC--SCSCEEEE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEE--EEEEEEEe
Confidence            467899999999999999999999764  11100                             0011122  22222223


Q ss_pred             ECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhCCCCc-EEEEeecccc
Q psy17231         54 VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAK-IFLCGNNEQC  126 (189)
Q Consensus        54 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~d~  126 (189)
                        .....+.+|||||+++|.......+..+|++++|+|+++..   +|+   +...++..+..  .++| +|+|+||+|+
T Consensus        82 --~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl  157 (458)
T 1f60_A           82 --TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             --CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred             --cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEcccc
Confidence              33467999999999999888888899999999999998763   332   23333332222  2565 9999999997


Q ss_pred             ccc------------------------CCceEEeeccCCCCHHHH
Q psy17231        127 HNL------------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       127 ~~~------------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ...                        ..+++++||++|.|+.++
T Consensus       158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            520                        147999999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.77  E-value=1.3e-19  Score=147.23  Aligned_cols=139  Identities=16%  Similarity=0.134  Sum_probs=82.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCcccceeeeeEEEEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFIS-----------------------------SSSRKSTLGLDNFNKEYKV   54 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~-----------------------------~~~~~~t~~~~~~~~~~~~   54 (189)
                      .+.++|+++|..++|||||+++|...  .+..                             +..+..|++  .....+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFET  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEec
Confidence            45689999999999999999999642  1110                             000112221  11122333


Q ss_pred             CCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC-CCCc-EEEEeeccccccc
Q psy17231         55 DDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA-ENAK-IFLCGNNEQCHNL  129 (189)
Q Consensus        55 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p-~ivv~nK~d~~~~  129 (189)
                      +  ...+.+|||||+++|.......+..+|++++|+|+++.   .+|+....|...+.... .++| +|+|+||+|+...
T Consensus       119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred             C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence            3  35789999999999988888888999999999999986   34432222222222111 3677 9999999998320


Q ss_pred             ----------------------------CCceEEeeccCCCCHHHHH
Q psy17231        130 ----------------------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       130 ----------------------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                                                  ..+++++||++|.|+++++
T Consensus       197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                                        1258999999999998866

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.77  E-value=7.1e-19  Score=153.20  Aligned_cols=149  Identities=14%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCC-------C-----CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDT-------F-----ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~-------~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      .++.++|+++|.+++|||||+++|....       +     .+....+.+.|.++......+......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4567999999999999999999997631       1     011111223333333333334344568899999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc----------------------
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL----------------------  129 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~----------------------  129 (189)
                      .......+..+|++++|+|+++... .+...++..+...  ++| +|+++||+|+...                      
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            8877788899999999999988532 2334455444444  688 7899999997520                      


Q ss_pred             -CCceEEeeccCC--------CCHHHHHHHHHHHHH
Q psy17231        130 -ISSTYKTSCKTG--------EGVEEMFADIGRQLI  156 (189)
Q Consensus       130 -~~~~~~~Sa~~~--------~~i~~~~~~i~~~i~  156 (189)
                       ..+++++||++|        .|++++++.+.+.+.
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence             137899999999        468888888766543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.76  E-value=2.7e-18  Score=141.20  Aligned_cols=117  Identities=10%  Similarity=0.042  Sum_probs=76.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CCCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFIS------------------SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG   68 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   68 (189)
                      +..+|+++|.+|+|||||+++|....-..                  ......+.|.+.......+....+.+++|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            46899999999999999999998632100                  000011222222222222222346889999999


Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      +.+|.......++.+|++++|+|+++.... +...++..+..  .++|+++++||+|+
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~~--~~ipiivviNK~Dl  146 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTRL--RDTPILTFMNKLDR  146 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHTT--TTCCEEEEEECTTS
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHHH--cCCCEEEEEcCcCC
Confidence            999988888899999999999999875321 22223322222  37999999999774

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.4e-19  Score=148.82  Aligned_cols=140  Identities=19%  Similarity=0.241  Sum_probs=94.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------------cccceeeeeEEEEEEC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-----------------------------KSTLGLDNFNKEYKVD   55 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~   55 (189)
                      ..+.++|+++|.+|+|||||+++|...........                             .+.+..+.....+.. 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            35679999999999999999999986532111100                             011111222223333 


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                       ....+.+|||||+++|.......+..+|++++|+|+++..   +|   .+....+ .+.......|+|+|+||+|+...
T Consensus       243 -~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          243 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSLGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             -SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTTTCCEEEEEEECTTTTTT
T ss_pred             -CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHcCCCeEEEEEecccccch
Confidence             3467899999999999888888899999999999998743   11   1111122 22222223569999999997541


Q ss_pred             ------------------------CCceEEeeccCCCCHHHH
Q psy17231        130 ------------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus       130 ------------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                                              ..+++++||++|.|++++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                                    237899999999999876

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=1e-17  Score=127.11  Aligned_cols=136  Identities=20%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHH-------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSS-------   78 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------   78 (189)
                      .+.++|+++|.+|+|||||+|+|.+..+........+. ...........  ...+.+|||||+.++......       
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~  113 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKS  113 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc-eeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHH
Confidence            45799999999999999999999987753322222221 12222223333  467899999999876543321       


Q ss_pred             --HhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC-CC--CcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHH
Q psy17231         79 --YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-EN--AKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        79 --~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~--~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                        ..+.+|++++|+|++.. ++... ..|+..+.... .+  .|+++|+||+|+...          .+..+++..+...
T Consensus       114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~----------~~~~~~~~~~~~~  182 (270)
T 1h65_A          114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP----------DGLPYDEFFSKRS  182 (270)
T ss_dssp             HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG----------GGCCHHHHHHHHH
T ss_pred             HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc----------CCCCHHHHHHHHH
Confidence              12368999999999764 24333 46776666543 22  699999999997532          2345666554444


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      ..+
T Consensus       183 ~~l  185 (270)
T 1h65_A          183 EAL  185 (270)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=4.3e-18  Score=144.04  Aligned_cols=115  Identities=13%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC--CCC------CC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFI------SS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG   67 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~------~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   67 (189)
                      .+..+|+|+|.+|+|||||+++|...  .+.      ..          ..+..|+.  .....+.+.  .+.+++||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~--~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWK--DHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEECCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEEC--CeEEEEEECc
Confidence            44689999999999999999999732  110      00          01122221  222233333  4688999999


Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      |+.+|...+...++.+|++++|+|+++..++.....|.. +...  ++|+++|+||+|+.
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~  142 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKT  142 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence            999999889999999999999999998777766665553 3333  79999999997753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.75  E-value=4.8e-18  Score=123.84  Aligned_cols=140  Identities=13%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----------ccch
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----------ASIT   76 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~   76 (189)
                      +..+|+++|++|||||||++++.+..+....  .++.|.......+.+.+   .+.+||+||....          ....
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~--~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLART--SKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccc--cCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            4679999999999999999999876643222  33444344333333333   4689999997431          2122


Q ss_pred             HHHh---cCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCc
Q psy17231         77 SSYY---KFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISS  132 (189)
Q Consensus        77 ~~~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~  132 (189)
                      ..++   ..++++++|+|+++..++.  .+..|+.   .  .+.|+++|+||+|....                   ...
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            2233   4678999999998765442  2333332   2  37999999999885321                   125


Q ss_pred             eEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        133 TYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       133 ~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      ++++||+++.|++++++++.+.+.
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHh
Confidence            688999999999999999877653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.74  E-value=4.1e-19  Score=147.91  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCe
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDR   57 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~   57 (189)
                      ..+.++|+++|.+++|||||+++|......                           +........|.+.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            355789999999999999999999532100                           00000001122222222223333


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCc-EEEEeeccccccc-
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL-  129 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~-  129 (189)
                      ...+.||||||+++|.......+..+|++++|+|+++..   ++   .+....+..+...  ++| +|+|+||+|+... 
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~  331 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS  331 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence            467899999999999888888889999999999998532   11   1111222222222  565 9999999997430 


Q ss_pred             -------------------C-----CceEEeeccCCCCHH
Q psy17231        130 -------------------I-----SSTYKTSCKTGEGVE  145 (189)
Q Consensus       130 -------------------~-----~~~~~~Sa~~~~~i~  145 (189)
                                         .     .+++++||++|.|+.
T Consensus       332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence                               1     168999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.73  E-value=3e-17  Score=138.49  Aligned_cols=124  Identities=15%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             CCCCC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------Ccc---cceeeeeEEEEEECCeEEEEEEEe
Q psy17231          1 MASIK-VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS-----------RKS---TLGLDNFNKEYKVDDRSIQMQLWD   65 (189)
Q Consensus         1 m~~~~-~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~-----------~~~---t~~~~~~~~~~~~~~~~~~~~i~D   65 (189)
                      |.+.. .+..+|+|+|+.|+|||||+++|..........           ..+   ..+..+......+....+.+++||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            44444 345789999999999999999998433211000           000   011122222222222346889999


Q ss_pred             CCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      |||+.+|.......++.+|++++|+|+++.... +...++..+...  ++|+++++||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHHc--cCCEEEEecCCchh
Confidence            999999988888999999999999998765432 233455454443  79999999998863

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.73  E-value=5e-17  Score=129.79  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccchH---HHhc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----ASITS---SYYK   81 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~   81 (189)
                      ..+.|+|++|+|||||++++.+........+..|.  ......+..++ ...+.+||+||..+.    ..+..   ....
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl--~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e  234 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL--SPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA  234 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS--CCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCccccee--cceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence            35889999999999999999876432222222222  22223344433 246799999997432    22222   2345


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-------------CCceEEeeccCCCCHH
Q psy17231         82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~  145 (189)
                      .++.+++|+|++ ...+.++..|..++....   ...|.++|+||+|....             ..+++.+||+++.|++
T Consensus       235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            789999999998 666778888877776653   36899999999886421             2378999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy17231        146 EMFADIGRQLILSNR  160 (189)
Q Consensus       146 ~~~~~i~~~i~~~~~  160 (189)
                      ++++++.+.+.+...
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999876543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.71  E-value=1.1e-16  Score=135.61  Aligned_cols=116  Identities=9%  Similarity=0.027  Sum_probs=80.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------C----CCcccceeeeeEEEEEEC-----CeEEEEE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFISS------------S----SRKSTLGLDNFNKEYKVD-----DRSIQMQ   62 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~------------~----~~~~t~~~~~~~~~~~~~-----~~~~~~~   62 (189)
                      .+..+|+|+|..|+|||||+++|...  .+...            .    .+..|+.  .....+.+.     +..+.++
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT--SAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceee--eceEEEEECCccccCCceeEE
Confidence            45689999999999999999999743  11100            0    0111221  111222222     2347899


Q ss_pred             EEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      +|||||+.+|.......++.+|++++|+|+++.........|. .+..  .++|+++|+||+|+
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~  146 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDR  146 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCc
Confidence            9999999999888899999999999999999876554444443 3333  37999999999764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=8.5e-17  Score=136.20  Aligned_cols=114  Identities=12%  Similarity=0.127  Sum_probs=80.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh--CCCCCC---------C-------CCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY--DTFISS---------S-------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTG   67 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~--~~~~~~---------~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   67 (189)
                      .+..+|+|+|.+|+|||||+++|..  +.+...         .       .+..|+  ......+.+.  ...+++||||
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi--~~~~~~~~~~--~~~i~liDTP   83 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI--TSAATTAAWE--GHRVNIIDTP   83 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceE--eeeeEEEEEC--CeeEEEEECc
Confidence            4468999999999999999999984  222100         0       011111  1122233344  3688999999


Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      |+.+|.......++.+|++++|+|+++..+......|. .+...  ++|+++|+||+|+
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl  139 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDK  139 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTS
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCc
Confidence            99999988899999999999999999876666655554 34443  7999999999774

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.70  E-value=7.1e-17  Score=126.95  Aligned_cols=115  Identities=15%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             ccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHH
Q psy17231         41 STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVT  110 (189)
Q Consensus        41 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~  110 (189)
                      +|+|++.  ..+..+  .+.+.+||++|++.+...|..++++++++|+|||+++          ..++++...|+..+..
T Consensus       187 ~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          187 PTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             CCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             CccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            4555543  334444  3789999999999999999999999999999999999          7899999999998886


Q ss_pred             hC--CCCcEEEEeecccccc------------------------------------------cCCceEEeeccCCCCHHH
Q psy17231        111 YA--ENAKIFLCGNNEQCHN------------------------------------------LISSTYKTSCKTGEGVEE  146 (189)
Q Consensus       111 ~~--~~~p~ivv~nK~d~~~------------------------------------------~~~~~~~~Sa~~~~~i~~  146 (189)
                      ..  .+.|+|+++||+|+..                                          ....+++|||+++.||++
T Consensus       263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            53  6899999999988641                                          112568999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy17231        147 MFADIGRQLILSN  159 (189)
Q Consensus       147 ~~~~i~~~i~~~~  159 (189)
                      +|+++.+.+.+..
T Consensus       343 vF~~v~~~i~~~~  355 (362)
T 1zcb_A          343 VFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.69  E-value=1.8e-16  Score=125.83  Aligned_cols=115  Identities=15%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             cceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh
Q psy17231         42 TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTY  111 (189)
Q Consensus        42 t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~  111 (189)
                      |+|++.  ..+.+++  +.+++||++|++.+...|..++++++++++|||+++          ..+|+++..|+..+...
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            445443  3344443  789999999999999999999999999999999999          89999999999998875


Q ss_pred             C--CCCcEEEEeecccccc------c----------------------------------------------------CC
Q psy17231        112 A--ENAKIFLCGNNEQCHN------L----------------------------------------------------IS  131 (189)
Q Consensus       112 ~--~~~p~ivv~nK~d~~~------~----------------------------------------------------~~  131 (189)
                      .  .+.|++||+||+|+..      .                                                    ..
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence            3  6899999999988521      0                                                    01


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQLILSNR  160 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  160 (189)
                      .+++|||+++.||+++|.++.+.+.+...
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence            25689999999999999999988876653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.69  E-value=2.4e-16  Score=121.77  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCccc-------------cccchHHHhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231         59 IQMQLWDTGGMER-------------VASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNE  124 (189)
Q Consensus        59 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (189)
                      ..+.+|||||..+             +......++..+|++++|+|.++.... .....+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4689999999754             334556778899999999997443211 111122222222  379999999998


Q ss_pred             ccccc-------------C--CceEEeecc---C---CCCHHHHHHHHHHHHHH
Q psy17231        125 QCHNL-------------I--SSTYKTSCK---T---GEGVEEMFADIGRQLIL  157 (189)
Q Consensus       125 d~~~~-------------~--~~~~~~Sa~---~---~~~i~~~~~~i~~~i~~  157 (189)
                      |+...             .  ..|+++|++   +   +.|++++++.+...+..
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            86421             0  256666554   4   78999999988777654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.68  E-value=2.7e-17  Score=126.63  Aligned_cols=148  Identities=17%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC-CCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD-TFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-------ERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~-~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   72 (189)
                      ..++|+++|++|+|||||+++|.+. .++....      ..++.............+....+.+||++|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999998765 3332220      0122221221122222344568899999998       444


Q ss_pred             ccchH-------HHhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231         73 ASITS-------SYYKF-------------AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----  128 (189)
Q Consensus        73 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----  128 (189)
                      ..+..       .+++.             +++++++.+.+ ..+++.+..  ..+.......|+++|+||+|+..    
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence            44433       33322             23333333322 123333321  22222334689999999988631    


Q ss_pred             -------------cCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        129 -------------LISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                                   ...++|++||++| |++++|+++.+.+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence                         1248899999999 9999999999888644

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.66  E-value=2.4e-16  Score=124.15  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=92.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccce-eee--------------------------------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLG-LDN--------------------------------------   47 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~-~~~--------------------------------------   47 (189)
                      ...+|+|+|++|||||||+|+|.+..+.+......|.. ...                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34599999999999999999999987643332111100 000                                      


Q ss_pred             -----------eEEEEEE-CCeEEEEEEEeCCCcccc-------------ccchHHHhcCCcEEEEEEeCCChhhHHHHH
Q psy17231         48 -----------FNKEYKV-DDRSIQMQLWDTGGMERV-------------ASITSSYYKFAEAAILVFSLDNAASFHVLS  102 (189)
Q Consensus        48 -----------~~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  102 (189)
                                 ....+.+ ......+.+|||||..++             ..+...+++.++++++|+|.++.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                       0000000 001235799999998776             345677889999999999876543221  2


Q ss_pred             HHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231        103 QHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus       103 ~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      .|+..+.... .+.|+|+|+||+|+...               ..+|+++|++++.++++.+...
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            3333333332 47899999999886421               2378999999999888765543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=1.3e-16  Score=127.07  Aligned_cols=87  Identities=16%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEE-------------------EECC-eEEEEEEEeCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY-------------------KVDD-RSIQMQLWDTGG   68 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------------~~~~-~~~~~~i~D~~g   68 (189)
                      ++|+++|.+|||||||+|+|.+........+..|.........+                   .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999977633222222222111111111                   1122 246799999999


Q ss_pred             cccc----ccchH---HHhcCCcEEEEEEeCCCh
Q psy17231         69 MERV----ASITS---SYYKFAEAAILVFSLDNA   95 (189)
Q Consensus        69 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   95 (189)
                      ....    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22222   346889999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.65  E-value=5.5e-17  Score=124.91  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=97.3

Q ss_pred             HHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh-hHHH
Q psy17231         23 SLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHV  100 (189)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~  100 (189)
                      +|+.++..+.|. ..+  .+|+| +........++   .+.+||+  +++|..++..+++++|++++|||+++++ ++..
T Consensus        32 sl~~~~~~~~f~~~~~--~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~  103 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNL--KIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI  103 (301)
T ss_dssp             CEEEEEECGGGTTTTC--CCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred             cEEEEEEcccccccCC--CCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence            678888888876 444  78888 43333322222   6899999  8899999999999999999999999997 7899


Q ss_pred             HHHHHHHHHHhCCCCcEEEEeeccccccc-------------C--CceEEeeccCCCCHHHHHHHHHH
Q psy17231        101 LSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I--SSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus       101 ~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                      +..|+..+...  ++|+++|+||+|+...             .  .++++|||++|.|++++|..+..
T Consensus       104 l~~~l~~~~~~--~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          104 IDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHHHC--CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99999887653  7999999999997421             1  47999999999999999988753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.65  E-value=8.5e-16  Score=132.53  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCC----CCCcccceeeeeEEEEE------------ECCe
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT------------FISS----SSRKSTLGLDNFNKEYK------------VDDR   57 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~----~~~~~t~~~~~~~~~~~------------~~~~   57 (189)
                      .+..+|+|+|..|+|||||+++|....            +.+.    ..+..|+........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            346799999999999999999997541            1110    11112322222222222            1334


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      .+.+++|||||+.+|...+...++.+|++++|+|+++..+++....|... ..  .++|+++|+||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~--~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG--ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH--cCCCeEEEEECCCcch
Confidence            68899999999999999999999999999999999998777776656543 23  3799999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.64  E-value=1.7e-16  Score=124.74  Aligned_cols=146  Identities=14%  Similarity=0.187  Sum_probs=87.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----cccc--------------------------------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR----KSTL--------------------------------------   43 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~----~~t~--------------------------------------   43 (189)
                      ....+|+++|.+|||||||+|+|.+..+.+....    .++.                                      
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            3457999999999999999999998876422110    1110                                      


Q ss_pred             -----eeeeeEEEEEEC-CeEEEEEEEeCCCccc-------------cccchHHHhcCCcEEEE-EEeCCChhhHHHHHH
Q psy17231         44 -----GLDNFNKEYKVD-DRSIQMQLWDTGGMER-------------VASITSSYYKFAEAAIL-VFSLDNAASFHVLSQ  103 (189)
Q Consensus        44 -----~~~~~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~  103 (189)
                           ++......+... .....+.+|||||...             +..+...++..++.+++ |.|.+....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 000000001110 0124689999999642             23344556666655555 555543221111112


Q ss_pred             HHHHHHHhCCCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHHHHHH
Q psy17231        104 HLLEIVTYAENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus       104 ~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                      ++..+..  .+.|+++|+||+|+....                  .+++++||+++.|++++++++.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333222  479999999999864210                  14577999999999999998876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=3.4e-15  Score=123.32  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=77.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC------------------CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD------------------TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      .-+|.|+|..++|||||..+|+..                  .+.+..+-+..-|+.+......+.++.+.++|+||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            468999999999999999999511                  11111111222233333332333333478999999999


Q ss_pred             cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      .+|.......++.+|++++|+|+...-.-+...-| +...++  ++|.|++.||.|.
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr  164 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDR  164 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTS
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccc
Confidence            99999999999999999999999875433333444 344444  7999999999663

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.61  E-value=6.1e-16  Score=123.60  Aligned_cols=146  Identities=15%  Similarity=0.186  Sum_probs=72.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------   74 (189)
                      -.++|+|+|++|+|||||++.|.+..+.....      ..++.+...........+....+.+||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            35789999999999999999999876532211      012222121111112233345789999999865421      


Q ss_pred             -------------------chHHHhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc-----
Q psy17231         75 -------------------ITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN-----  128 (189)
Q Consensus        75 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~-----  128 (189)
                                         +...++.++++.+++|+.... .++..+. .|+..+.   .+.|+|+|+||+|+..     
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence                               012233455666666666543 4555553 5666554   3799999999998632     


Q ss_pred             ------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        129 ------------LISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       129 ------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                  ...+++++|++++.+++++|..+...+
T Consensus       187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence                        124789999999999999887776544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=1.9e-15  Score=118.90  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.+|||||...   ........+|++++|+|....+.+..+..+       ....|+++|+||+|+.+.         
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~~  241 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAARE  241 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHHH
Confidence            5789999999533   234556899999999998765544332211       124799999999986411         


Q ss_pred             ---------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                                     ..+++.+||++|.|++++++++.+.+..
T Consensus       242 l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          242 LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                           2479999999999999999999887754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.57  E-value=3.5e-15  Score=109.52  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------------EEEEEE------------------CC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------------NKEYKV------------------DD   56 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------------~~~~~~------------------~~   56 (189)
                      ...+|+++|.+|||||||+++|........  ....+..++.            ......                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~--~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEV--KIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF  106 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTS--CEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCC--eEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence            356899999999999999999986522110  0010000000            000111                  11


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------  129 (189)
                      ....+.+|||+|+.....   .+....+.+++|+|+++...  ....+..   ..  +.|+++|+||+|+...       
T Consensus       107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~---~~--~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPE---IF--RVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHH---HH--HTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhh---hh--hcCCEEEEecccCCcchhhHHHH
Confidence            234678999998521111   11125688999999876532  1111111   11  4889999999997421       


Q ss_pred             ----------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        130 ----------ISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       130 ----------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                                ..+++++||++|.|++++++++.+.+...
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                      23789999999999999999998877543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.57  E-value=4e-15  Score=122.94  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCcccceeeeeEEEEE------------------------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFIS--SSSRKSTLGLDNFNKEYK------------------------------   53 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~------------------------------   53 (189)
                      ....+|+|+|.+|+|||||+|+|.+..+..  ... .++.  +.......                              
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCC--CSEEEEECCSSSEEECCC------------------CC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            356899999999999999999999887631  111 1111  11000000                              


Q ss_pred             --------ECCe-EEEEEEEeCCCccc-----------cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC
Q psy17231         54 --------VDDR-SIQMQLWDTGGMER-----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE  113 (189)
Q Consensus        54 --------~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  113 (189)
                              .... ...+.+|||||...           |......++..+|++++|+|+++.........|+..+...  
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--  217 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--  217 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence                    0000 02579999999864           3345566788999999999998865555666666665443  


Q ss_pred             CCcEEEEeeccccc
Q psy17231        114 NAKIFLCGNNEQCH  127 (189)
Q Consensus       114 ~~p~ivv~nK~d~~  127 (189)
                      +.|+++|+||+|+.
T Consensus       218 ~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          218 EDKIRVVLNKADMV  231 (550)
T ss_dssp             GGGEEEEEECGGGS
T ss_pred             CCCEEEEEECCCcc
Confidence            68999999999974

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.56  E-value=5.1e-14  Score=110.38  Aligned_cols=84  Identities=19%  Similarity=0.138  Sum_probs=56.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   73 (189)
                      ++|+++|.+|||||||+|+|.+..+.....+..|++.+.  ..+.+.+.               ...+.+||+||+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            689999999999999999999877533332233432222  22333332               1478999999987653


Q ss_pred             ----cc---hHHHhcCCcEEEEEEeCCC
Q psy17231         74 ----SI---TSSYYKFAEAAILVFSLDN   94 (189)
Q Consensus        74 ----~~---~~~~~~~~~~~i~v~d~~~   94 (189)
                          .+   ....++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                22   2345789999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.55  E-value=9.6e-17  Score=118.30  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------------EEEEEEC-Ce----------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------------NKEYKVD-DR----------------   57 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~----------------   57 (189)
                      +.++|+++|.+|||||||+++|....+..  .+.++++.++.            ......+ +.                
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  114 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL  114 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence            46899999999999999999998765533  22344433332            1111111 10                


Q ss_pred             ---EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----
Q psy17231         58 ---SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----  129 (189)
Q Consensus        58 ---~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----  129 (189)
                         ...+.++|++|.-...   ..+-...+..+.+.|........  .. +...  .  ..|.++|+||+|+...     
T Consensus       115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~-~~~~--~--~~~~iiv~NK~Dl~~~~~~~~  184 (226)
T 2hf9_A          115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EK-HPGI--M--KTADLIVINKIDLADAVGADI  184 (226)
T ss_dssp             CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TT-CHHH--H--TTCSEEEEECGGGHHHHTCCH
T ss_pred             hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hh-hhhH--h--hcCCEEEEeccccCchhHHHH
Confidence               1134555555521100   01111234455666643211100  00 0011  1  4788999999996431     


Q ss_pred             ------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 ------------ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 ------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                                  ..+++++||++|.|++++|+++.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence                        2478999999999999999999887754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.54  E-value=7.9e-14  Score=109.34  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.++||+|....   .......+|.+++|+|+++......+..   .+    ...|.++|+||+|+...         
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~  236 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQAE  236 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHHH
Confidence            46799999996422   2455778999999999987543322221   11    24688999999997420         


Q ss_pred             ---------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                     ..+++.+||++|.|++++++++.+.+.
T Consensus       237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                           236789999999999999999988654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.53  E-value=5.2e-14  Score=105.85  Aligned_cols=96  Identities=15%  Similarity=0.036  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCccccccchH------HHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         59 IQMQLWDTGGMERVASITS------SYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      +.+.+|||||+.+......      ..+.. +++++++|...   +..+.....+....... .+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-cCCCeEEEEeccccccc
Confidence            4789999999876543221      13345 77778887643   33333222222111111 36899999999886311


Q ss_pred             -------------------------------------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 -------------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 -------------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                                                 ..+++++||++|.|++++++++.+.+.
T Consensus       187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence                                                       127899999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.50  E-value=3e-14  Score=111.47  Aligned_cols=88  Identities=10%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.+|||||..+..   ......+|++++|+|.+....+..+..   ..    .+.|.++|+||+|+.+.         
T Consensus       149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~  218 (341)
T 2p67_A          149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARHM  218 (341)
T ss_dssp             CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHHH
Confidence            578999999975433   235689999999999876543221111   11    14788999999886321         


Q ss_pred             ---------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                     ..+++.+||++|.|++++++++.+.+.
T Consensus       219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                           235789999999999999999988764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.49  E-value=1e-14  Score=122.50  Aligned_cols=116  Identities=11%  Similarity=0.086  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh--CCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY--DTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~--~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      .-+|.|+|..++|||||..+|+.  +..            .+..+-+..-|+++......+.++.+.++++||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            35789999999999999999952  111            1111111111334444434444455789999999999999


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      ......++.+|++++|+|+...-.-+. ...++.+...  ++|.|++.||.|.
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~--~lp~i~~INKmDr  131 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM--GIPTIFFINKIDQ  131 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH--TCSCEECCEECCS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc--CCCeEEEEecccc
Confidence            999999999999999999976422222 2333344444  7999999999663

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.2e-13  Score=106.40  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---hHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----I---TSSYY   80 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~   80 (189)
                      ..+|.|+|.||||||||+|+|.+........+..|.  +.....+.+.+  .+++++|+||..+-..    .   .-...
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~--~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTL--VTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCC--CEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCcee--eeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            358999999999999999999987765554444444  55555666666  4789999999754321    1   22456


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEeecccccccCCceEEeeccCCCCHHH
Q psy17231         81 KFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~  146 (189)
                      +.+|++++|+|++++.. ++.+...+..........|.+++.||.|....  .+.......+.+.++
T Consensus       148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi--~i~~~~~~~~l~~ee  212 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI--SITNTVPLTHLGNDE  212 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE--EEEESSCCSSCCHHH
T ss_pred             HhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh--hhhcchhhhhccHHH
Confidence            78999999999998742 22333332221111256889999999987654  333333334444443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.48  E-value=2.7e-13  Score=106.69  Aligned_cols=84  Identities=18%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-------------------eEEEEEEEeCCCc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-------------------RSIQMQLWDTGGM   69 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~   69 (189)
                      ++|+++|.+|||||||+|+|.+........+..|+..+..  .....+                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5899999999999999999987643222212223221111  112211                   2357899999998


Q ss_pred             cccc----cch---HHHhcCCcEEEEEEeCCC
Q psy17231         70 ERVA----SIT---SSYYKFAEAAILVFSLDN   94 (189)
Q Consensus        70 ~~~~----~~~---~~~~~~~~~~i~v~d~~~   94 (189)
                      .++.    .+.   ...++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            7653    222   235789999999999975

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.4e-12  Score=110.84  Aligned_cols=116  Identities=11%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC--------C------CCCCCCCcccceeeeeE--EEEEECC-----eEEEEEEEeC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD--------T------FISSSSRKSTLGLDNFN--KEYKVDD-----RSIQMQLWDT   66 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~--------~------~~~~~~~~~t~~~~~~~--~~~~~~~-----~~~~~~i~D~   66 (189)
                      .-+|.|+|..++|||||..+|+..        .      +.+..+-+..-|+++..  ..+.+.+     ..+.++++||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            358999999999999999999511        1      11111111111223322  2333322     3588999999


Q ss_pred             CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      ||+.+|.......++.+|++++|+|+...-.-+...-| +...+.  ++|.|++.||.|.
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~--~lp~i~~iNKiDr  149 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY--GVPRIVYVNKMDR  149 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH--TCCEEEEEECSSS
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc--CCCeEEEEccccc
Confidence            99999999999999999999999998764332223333 344444  7999999999664

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.39  E-value=1.6e-12  Score=110.21  Aligned_cols=146  Identities=15%  Similarity=0.156  Sum_probs=90.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc------------------------------------------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL------------------------------------------   43 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~------------------------------------------   43 (189)
                      ....+|+++|.+++|||||+|+|.+..+.+......|-                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            34679999999999999999999988763322111110                                          


Q ss_pred             -----eeeee--EEEEEECCeEEEEEEEeCCCcccc-------------ccchHHHh-cCCcEEEEEEeCCChhhHHHHH
Q psy17231         44 -----GLDNF--NKEYKVDDRSIQMQLWDTGGMERV-------------ASITSSYY-KFAEAAILVFSLDNAASFHVLS  102 (189)
Q Consensus        44 -----~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~  102 (189)
                           ++...  ...+...+ ...+.++||||...-             ......++ ..+|++++|+|++....-....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                 00000  00111111 124789999996541             11222333 5789999999997643222222


Q ss_pred             HHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231        103 QHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       103 ~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      .++..+..  .+.|+|+|+||.|+...                  ..+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            23333333  37999999999886421                  0145668999999999999988763

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=102.83  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMER   71 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   71 (189)
                      ..+++.++|.+|||||||+|+|.+..+.....+..|+  +.....+.+.+.               ...+.+||+||...
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi--~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTI--DPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcccc--CceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            4579999999999999999999987664333333333  333333443331               23589999999876


Q ss_pred             ccc-------chHHHhcCCcEEEEEEeCCChhhH
Q psy17231         72 VAS-------ITSSYYKFAEAAILVFSLDNAASF   98 (189)
Q Consensus        72 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~   98 (189)
                      ...       .+...++.+|++++|+|+++.+++
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            443       345678899999999999865443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.30  E-value=7.3e-12  Score=97.72  Aligned_cols=88  Identities=10%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------  128 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------  128 (189)
                      ..+.++||+|..+-   .......+|.+++|+|....+..+.+...   +.    ..|.+++.||+|+..          
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~~~  217 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAAAS  217 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHHHH
Confidence            57899999997532   23456789999999998654322212111   11    245677789999421          


Q ss_pred             ---------c------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        129 ---------L------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       129 ---------~------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                               .      ..+++.+||+++.|++++++.+.+.+.
T Consensus       218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                     0      246789999999999999999887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.21  E-value=8.2e-12  Score=90.06  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=63.2

Q ss_pred             CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhC---CCCcEEEEeecc-cccccC---------
Q psy17231         67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI---VTYA---ENAKIFLCGNNE-QCHNLI---------  130 (189)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~---~~~p~ivv~nK~-d~~~~~---------  130 (189)
                      +|+..++.+|..++..+|++|+|+|.+|++.++ ....+..+   ....   .+.|++|++||. |..+..         
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L  188 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL  188 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence            378889999999999999999999999886543 33333222   2221   478999999994 554321         


Q ss_pred             --------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        131 --------SSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       131 --------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                              ..+..|||++|+|+.|.++|+.+.+..+
T Consensus       189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence                    2568899999999999999998777543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.16  E-value=1.1e-10  Score=89.82  Aligned_cols=82  Identities=21%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             ccccccchHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------------cCC
Q psy17231         69 MERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------LIS  131 (189)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------~~~  131 (189)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+...  ++|+++|+||+|+..                ...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~--~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF--KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            5667777788899999999999999986 899899999877653  799999999999732                123


Q ss_pred             ceEEeeccCCCCHHHHHHHHH
Q psy17231        132 STYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      +++++||++|.|++++++.+.
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHhhcc
Confidence            789999999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.08  E-value=8.2e-11  Score=88.80  Aligned_cols=92  Identities=9%  Similarity=0.005  Sum_probs=67.1

Q ss_pred             CCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hh--CCCCcEEEEeec-ccccccC--------
Q psy17231         66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL---EIV-TY--AENAKIFLCGNN-EQCHNLI--------  130 (189)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~--~~~~p~ivv~nK-~d~~~~~--------  130 (189)
                      .+|+...+..|..++.++|++|+|+|.+|++.++ ....+.   .+. ..  ..+.|++|++|| +|..+..        
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578888999999999999999999999987543 322222   222 11  258999999997 5654332        


Q ss_pred             ---------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        131 ---------SSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       131 ---------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                               ..+..|||.+|+|+.|.++|+.+.+..+
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence                     2568899999999999999999887543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.97  E-value=2.7e-09  Score=84.54  Aligned_cols=86  Identities=20%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~   70 (189)
                      +..++.++|++|+|||||+|.|.+... .....+..|+  +.....+.+.+.               ...+.+||+||..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi--~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI--DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC--CTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee--cceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            357899999999999999999998765 3333222232  444444444431               1357999999965


Q ss_pred             cc-------ccchHHHhcCCcEEEEEEeCCC
Q psy17231         71 RV-------ASITSSYYKFAEAAILVFSLDN   94 (189)
Q Consensus        71 ~~-------~~~~~~~~~~~~~~i~v~d~~~   94 (189)
                      ..       .......++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            32       2234456788999999999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.76  E-value=1.5e-08  Score=79.82  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------  129 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------  129 (189)
                      ..++|..+...+.+.++++++|+|++++.     ..|...+.+...++|+++|+||+|+...                  
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            34678888889999999999999999864     4566666666568999999999997432                  


Q ss_pred             CC---ceEEeeccCCCCHHHHHHHHHHH
Q psy17231        130 IS---STYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       130 ~~---~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      ..   +++.+||++|.|++++++.+.+.
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            11   67999999999999999998654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.75  E-value=1.9e-09  Score=88.01  Aligned_cols=142  Identities=10%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH------hCCCC--CCCCCcccc-----------eeeeeEEEEE-------------E
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA------YDTFI--SSSSRKSTL-----------GLDNFNKEYK-------------V   54 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~------~~~~~--~~~~~~~t~-----------~~~~~~~~~~-------------~   54 (189)
                      +...|+++|.+||||||++++|.      +.+..  ..+.+.+..           ++........             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999997      33210  000001100           0111110000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc-chHH---H--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeeccccc
Q psy17231         55 DDRSIQMQLWDTGGMERVAS-ITSS---Y--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQCH  127 (189)
Q Consensus        55 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~~  127 (189)
                      ....+.+.|+||||...... +...   .  ...+|.+++|+|+.........   ...+..   ..|+ .+|.||.|..
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~---~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD---KVDVASVIVTKLDGH  253 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH---HHCCCCEEEECTTSC
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh---hcCceEEEEeCCccc
Confidence            00235789999999753221 1111   1  2378999999998764321111   122222   2675 8899997753


Q ss_pred             ccC-----------------------------CceEEeeccCCCC-HHHHHHHHHHH
Q psy17231        128 NLI-----------------------------SSTYKTSCKTGEG-VEEMFADIGRQ  154 (189)
Q Consensus       128 ~~~-----------------------------~~~~~~Sa~~~~~-i~~~~~~i~~~  154 (189)
                      ...                             .+.+.+|+..|.| ++++++++.+.
T Consensus       254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            211                             1224479999999 99999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.73  E-value=2.7e-08  Score=75.15  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .++++++|++|+|||||++.|.+..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999999999999997643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.71  E-value=8.4e-08  Score=76.62  Aligned_cols=62  Identities=19%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE--CCeEEEEEEEeCCCcc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV--DDRSIQMQLWDTGGME   70 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~D~~g~~   70 (189)
                      ++++|+|++|+|||||++.|.+..+..........+.......+..  .+....+.++|++|..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            5699999999999999999987754221111101111111111212  2223367899998864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.59  E-value=2.9e-09  Score=83.98  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----ch----
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFIS---SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----IT----   76 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~----   76 (189)
                      ..+++++|.+|+|||||+|+|.+.....   ........+.+.....+...+.   +.++||||......    +.    
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4589999999999999999998753211   0000111222333333444332   68999999754321    11    


Q ss_pred             HHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         77 SSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        77 ~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      ..+  ....+.++++++.....-+..+.. +..+.  ..+.|+++++||.|....
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCcccccc
Confidence            111  245677888887632110001100 00001  136899999999987543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.59  E-value=4.3e-09  Score=83.02  Aligned_cols=111  Identities=18%  Similarity=0.117  Sum_probs=63.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD------TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------   74 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------   74 (189)
                      ..+++++|.+|+|||||+|+|.+.      .......    .+.+.....+....   .+.++||||......       
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~----~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~  234 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF----PGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDA  234 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEEC----TTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCC----CCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhH
Confidence            457999999999999999999875      2211111    12222233344433   268999999753321       


Q ss_pred             -chHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         75 -ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        75 -~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                       ....++  ...+.++++.+....--+..+.. +..+.  ..+.|+++++||.|...
T Consensus       235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVH  288 (369)
T ss_dssp             TTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEE
T ss_pred             HHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccc
Confidence             112222  56788888888632210001100 00001  14689999999998754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.59  E-value=2.6e-08  Score=74.97  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      ++++++|.+|+|||||+|+|.+......   .++.|.+.....+..+.   .+.+|||||....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~---~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV---GAQPGITKGIQWFSLEN---GVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSCEEECTT---SCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc---CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence            5999999999999999999997765322   22223233222233322   5789999997643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.59  E-value=1.3e-06  Score=69.64  Aligned_cols=143  Identities=13%  Similarity=0.136  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH-----hc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY-----YK   81 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   81 (189)
                      ...+.++|++|+|||||+|.+.+...+..... .............. ....-.+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            34789999999999999999987432221100 00000000011111 1111146899999864221111111     22


Q ss_pred             CCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc------------------------------cc
Q psy17231         82 FAEAAILVFSLD--NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH------------------------------NL  129 (189)
Q Consensus        82 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~------------------------------~~  129 (189)
                      ..+..++ ++..  .++.. .   ....+...  ++|+++|.||.|..                              ..
T Consensus       148 ~~~~~~~-lS~G~~~kqrv-~---la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDI-D---IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHH-H---HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEE-eCCCCccHHHH-H---HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            3354444 6654  22211 1   22222332  68999999993311                              11


Q ss_pred             ---CCceEEeec--cCCCCHHHHHHHHHHHHHHh
Q psy17231        130 ---ISSTYKTSC--KTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       130 ---~~~~~~~Sa--~~~~~i~~~~~~i~~~i~~~  158 (189)
                         ....+.+|+  ..+.|++++.+.+.+.+.+.
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence               125688899  66678999999988766443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.58  E-value=6.4e-08  Score=73.56  Aligned_cols=60  Identities=25%  Similarity=0.353  Sum_probs=36.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ...++++++|.+|||||||+|+|.+........   ..+.+.....+..+.   .+.+|||||...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~---~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD---RPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC---CCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            456899999999999999999999766422221   112122222233332   578999999753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.54  E-value=8.5e-08  Score=75.58  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231         68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------  129 (189)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------  129 (189)
                      .+++|..+...++..++++++|+|++++.+     .|...+.+...+.|+++|+||+|+...                  
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~  131 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL  131 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence            467788888888899999999999999874     355555555568999999999997432                  


Q ss_pred             C---CceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 I---SSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 ~---~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      .   .+++.+||++|.|++++++.+.+..
T Consensus       132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            1   1578999999999999999886543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.25  E-value=1.6e-06  Score=72.01  Aligned_cols=66  Identities=24%  Similarity=0.201  Sum_probs=39.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER   71 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   71 (189)
                      ..+..+|+|+|.+|+|||||+|+|.+.......   ....|.+......... ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence            455688999999999999999999987632111   1111222111110010 11234689999999754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.24  E-value=1.9e-06  Score=65.44  Aligned_cols=87  Identities=10%  Similarity=0.046  Sum_probs=62.0

Q ss_pred             EeCCCcc-ccccchHHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeecccccc------------
Q psy17231         64 WDTGGME-RVASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHN------------  128 (189)
Q Consensus        64 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~------------  128 (189)
                      -..||+. .........+..+|+++.|+|+.++.+..  .+..|+       .++|.++|+||+|+..            
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~   76 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFE   76 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence            3467764 23334566788999999999999987654  344433       4799999999998642            


Q ss_pred             -cCCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        129 -LISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                       ...+++.+||+++.|++++++.+.+.+..
T Consensus        77 ~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           77 NQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence             12378899999999999999988776654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.20  E-value=1e-07  Score=77.45  Aligned_cols=110  Identities=9%  Similarity=0.015  Sum_probs=63.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--ccch-------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--ASIT-------   76 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~-------   76 (189)
                      ..+.+|+++|.+|+||||+.++|........   .++..++.........+......+||..|.+.+  ...+       
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~---~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG---VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC---CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999975422110   222211111110011111123467898886322  2222       


Q ss_pred             -HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEe
Q psy17231         77 -SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG  121 (189)
Q Consensus        77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~  121 (189)
                       ..++....+.++|+|.++. +.+....|+..+...  ..+++.+-
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEE
Confidence             4455567888999999988 456667777666655  34554444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.11  E-value=1.3e-05  Score=64.37  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh------CCC--CCCCCCccc-----------ceeeeeEEEEEEC------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY------DTF--ISSSSRKST-----------LGLDNFNKEYKVD------------   55 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~------~~~--~~~~~~~~t-----------~~~~~~~~~~~~~------------   55 (189)
                      ++..|+++|++|+||||++.+|..      .+.  ...+.+.+.           .+..........+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999963      111  001111110           0111110000000            


Q ss_pred             -CeEEEEEEEeCCCcccccc-----ch-HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         56 -DRSIQMQLWDTGGMERVAS-----IT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        56 -~~~~~~~i~D~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                       ...+.+.++||+|......     +. ......++.+++|.|+.....-...   ...+...  -.+..+|.||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh--CCCeEEEEECCCCc
Confidence             0125789999999543221     11 1123357889999998754322121   2222222  35667999997743

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.02  E-value=2.4e-06  Score=68.58  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +..|+++|++||||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999964

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.76  E-value=2.4e-05  Score=54.68  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=24.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |...+++...|+++|++|+||||+++.|..
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            555566677899999999999999999864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=2.3e-05  Score=55.31  Aligned_cols=23  Identities=39%  Similarity=0.687  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.67  E-value=7.4e-05  Score=62.56  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ..++|+|++|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.63  E-value=4.1e-05  Score=55.04  Aligned_cols=30  Identities=20%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |.+..++...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            455455567899999999999999999964

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.62  E-value=0.00019  Score=54.76  Aligned_cols=64  Identities=9%  Similarity=-0.002  Sum_probs=37.9

Q ss_pred             EEEEEEEeCCCccc--ccc-chH-----HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccc
Q psy17231         58 SIQMQLWDTGGMER--VAS-ITS-----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCH  127 (189)
Q Consensus        58 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~  127 (189)
                      .+.+.++||||...  ... +..     .....++.+++|.|......   .......+..   ..| ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~---~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ---ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence            35689999999765  211 111     13447899999999864321   1112222222   355 67899998854

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.59  E-value=0.00018  Score=57.91  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +-.-|.|+|++++|||||+|+|.+.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3455669999999999999999853

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.58  E-value=5.2e-05  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++|+|++|||||||++.|...
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346889999999999999999763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.57  E-value=5.3e-05  Score=54.00  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=24.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |-+++.++..|+|.|++||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            5667788899999999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.54  E-value=6e-05  Score=53.29  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...++++|++|||||||++.+.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            457889999999999999999865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.52  E-value=5.8e-05  Score=55.81  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .+...|+|+|++|||||||++.+.
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999998

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.52  E-value=5e-05  Score=54.40  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.++|+|++|+|||||++.+.+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999975

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.49  E-value=8.2e-05  Score=53.65  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +..-|+|+||+|||||||++.|...
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4456889999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.48  E-value=7.5e-05  Score=53.35  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..-++|+|++|||||||++.+.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346889999999999999999764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.43  E-value=0.00011  Score=52.71  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.-.|+|+||+|+|||||+++|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4457889999999999999999753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.42  E-value=9.4e-05  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.41  E-value=8.7e-05  Score=52.74  Aligned_cols=21  Identities=29%  Similarity=0.683  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.41  E-value=0.00039  Score=53.14  Aligned_cols=23  Identities=43%  Similarity=0.611  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ..++++|++|+|||||+|.+. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            467899999999999999998 54

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.40  E-value=0.00011  Score=53.02  Aligned_cols=26  Identities=38%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+.|+|++|+|||||++.+.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.40  E-value=9e-05  Score=54.05  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|+||+|||||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.40  E-value=0.0001  Score=51.78  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=9.2e-05  Score=53.29  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|+|++|||||||++.+.+-
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35789999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.39  E-value=0.00013  Score=50.94  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...|++.|++||||||+.+.|...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.39  E-value=0.0001  Score=51.00  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRY   28 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l   28 (189)
                      +.|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=0.00012  Score=51.71  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++..|++.|++||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.38  E-value=0.00014  Score=52.11  Aligned_cols=25  Identities=24%  Similarity=0.082  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+...|+|.|++||||||+++.|..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999999975

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.37  E-value=0.0001  Score=53.60  Aligned_cols=23  Identities=30%  Similarity=0.772  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++|+|++|+|||||++.+.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46889999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.37  E-value=0.00013  Score=56.68  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=20.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |++|.|+ ..|+|+|++|||||||..+|..
T Consensus         1 ~~~m~m~-~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            1 MTEMTKP-FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             -----CC-EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCC-ceEEEECCCcCcHHHHHHHHHH
Confidence            7777665 4688999999999999999964

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.36  E-value=0.00013  Score=52.07  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      +...++|+|++||||||+++.|....
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578999999999999999997653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.36  E-value=0.00015  Score=52.75  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             CCCCCceEE-EEEcCCCCCHHHHHHHHH
Q psy17231          3 SIKVPEQKV-ILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         3 ~~~~~~~~i-~i~G~~g~GKTtli~~l~   29 (189)
                      ..+.++.|| +|+|+|||||+|...+|.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHH
Confidence            344555555 478999999999999985

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.36  E-value=0.00014  Score=52.86  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|.|+|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999964

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.36  E-value=0.00012  Score=53.45  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+|.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999963

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.35  E-value=0.00014  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.00013  Score=52.12  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+|+|++||||||+++.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.33  E-value=0.00013  Score=50.97  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999964

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.33  E-value=0.00012  Score=50.77  Aligned_cols=23  Identities=35%  Similarity=0.608  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..|+|+|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.32  E-value=0.00019  Score=50.58  Aligned_cols=26  Identities=23%  Similarity=0.370  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++..+|+++|++||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.31  E-value=0.00014  Score=52.23  Aligned_cols=24  Identities=29%  Similarity=0.688  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...|+|+|++|||||||+++|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.31  E-value=0.00014  Score=52.49  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999963

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.31  E-value=6.3e-05  Score=57.65  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999997643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.31  E-value=0.00015  Score=50.13  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.30  E-value=0.00016  Score=51.91  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...|.|+|++|||||||++.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.29  E-value=0.00015  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.29  E-value=0.00012  Score=54.76  Aligned_cols=78  Identities=6%  Similarity=-0.106  Sum_probs=53.7

Q ss_pred             CCCcccc-ccchHHHhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc-------------
Q psy17231         66 TGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------  129 (189)
Q Consensus        66 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------  129 (189)
                      .||+... .......+..+|+++.|+|+.++.+...  +. ++        ++|.++|+||+|+...             
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~   74 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQ   74 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence            3665432 2244667789999999999998865532  22 21        6999999999996421             


Q ss_pred             CCceEEeeccCCCCHHHHHHHHHH
Q psy17231        130 ISSTYKTSCKTGEGVEEMFADIGR  153 (189)
Q Consensus       130 ~~~~~~~Sa~~~~~i~~~~~~i~~  153 (189)
                      ..++ .+||+++.|++++++.+..
T Consensus        75 g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           75 GKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCeE-EEECCCCcCHHHHHHHHHH
Confidence            2356 9999999999999887644

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.29  E-value=0.00016  Score=52.19  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.28  E-value=0.00012  Score=51.03  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRY   28 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l   28 (189)
                      --++++|++|||||||++.+
T Consensus        10 ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            45789999999999999964

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.27  E-value=0.00019  Score=50.39  Aligned_cols=24  Identities=38%  Similarity=0.422  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|+++|++||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999963

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.27  E-value=0.00019  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.+.|+++|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.26  E-value=0.00022  Score=52.65  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++++|+|.|++||||||+.++|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999964

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.26  E-value=0.00017  Score=50.95  Aligned_cols=21  Identities=43%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.25  E-value=0.00021  Score=50.39  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++..|++.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999964

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.25  E-value=0.00021  Score=51.07  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+|+|++|||||||++.|..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999964

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.24  E-value=0.00025  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..++.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999964

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.23  E-value=0.00016  Score=53.24  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|||||||++.+.+-.
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            367899999999999999998543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.23  E-value=0.0002  Score=49.50  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468899999999999999998755

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.00023  Score=50.85  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999963

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.22  E-value=0.00023  Score=49.80  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ....|++.|++|+||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345799999999999999999963

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.22  E-value=0.00022  Score=50.77  Aligned_cols=22  Identities=27%  Similarity=0.458  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.|+|.|++||||||+++.|..
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCccCHHHHHHHHHH
Confidence            3689999999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.20  E-value=0.00023  Score=50.08  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+|.|++||||||+++.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.20  E-value=0.0002  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++.++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999999753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.20  E-value=0.00028  Score=52.44  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ++...|.|+|++||||||+++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.18  E-value=7.4e-05  Score=52.95  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999963

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.18  E-value=0.00024  Score=50.74  Aligned_cols=25  Identities=24%  Similarity=0.162  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|+|+|++|+||||+.+.|...
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999998643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.18  E-value=0.0002  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.17  E-value=0.0002  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.|+|++|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999854

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.15  E-value=0.00026  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.15  E-value=0.00026  Score=51.11  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.15  E-value=0.00042  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|++.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.14  E-value=0.00028  Score=52.16  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.++|+.|+|||||++.+.+-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            35779999999999999999854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.13  E-value=0.00026  Score=55.34  Aligned_cols=25  Identities=36%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      -.++++|++|+|||||+|.|.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            3688999999999999999996543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.13  E-value=0.00035  Score=49.72  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|+|.|++||||||+++.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.13  E-value=0.00026  Score=52.16  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|+|||||++.+.+-
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999999999999999754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.12  E-value=0.00029  Score=51.14  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999964

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.11  E-value=0.00028  Score=52.79  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.++|+|++|||||||++.+.+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            34688999999999999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.11  E-value=0.00026  Score=53.02  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+-.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999998643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.11  E-value=0.00026  Score=53.42  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|+|||||++.+.+-.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            357899999999999999998643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.10  E-value=0.00036  Score=53.47  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             chHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEe
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKT  136 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~  136 (189)
                      +.......+|.+++|+|+.++. +...+.+++......  ++|.++|.||+|+...                 .-+++.+
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~  156 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT  156 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence            4445678899999999998764 334455555444333  7999999999997421                 2267889


Q ss_pred             eccCCCCHHHHHHH
Q psy17231        137 SCKTGEGVEEMFAD  150 (189)
Q Consensus       137 Sa~~~~~i~~~~~~  150 (189)
                      ||.++.|++++++.
T Consensus       157 sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          157 SSKDQDSLADIIPH  170 (307)
T ss_dssp             CHHHHTTCTTTGGG
T ss_pred             ecCCCCCHHHHHhh
Confidence            99999988876543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.10  E-value=0.00028  Score=51.26  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.|+|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.10  E-value=0.00034  Score=51.48  Aligned_cols=25  Identities=36%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.++.|+|.|++||||||+.+.+..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999963

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.09  E-value=0.00035  Score=50.12  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|+|.|++||||||+++.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999974

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.09  E-value=0.0003  Score=52.03  Aligned_cols=23  Identities=26%  Similarity=0.363  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|+|||||++.+.+-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999999754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.09  E-value=0.00029  Score=50.99  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.++|+++|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999964

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.09  E-value=0.00031  Score=53.73  Aligned_cols=23  Identities=22%  Similarity=0.223  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.++|+|++|+|||||++.|.+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            45789999999999999999974

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.09  E-value=0.00033  Score=49.20  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45789999999999999999854

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.09  E-value=0.00053  Score=48.24  Aligned_cols=25  Identities=32%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++...|+++|.+|+||||+++.+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999999964

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.09  E-value=0.00037  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999975

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.09  E-value=0.00052  Score=48.93  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ....|+|.|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999963

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.08  E-value=0.00038  Score=52.77  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+..|++.|++||||||+.++|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999999999964

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.08  E-value=0.00031  Score=52.13  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|+|||||++.+.+-.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999997653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.07  E-value=0.00033  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.07  E-value=0.00042  Score=50.69  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...++|+++|++||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.07  E-value=0.00029  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+-.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999997543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.05  E-value=0.00045  Score=53.08  Aligned_cols=26  Identities=23%  Similarity=0.103  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+.|+|++|||||||++.+.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44678889999999999999999753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.05  E-value=0.00045  Score=49.48  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|.|+|++|+||||+++.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467889999999999999999754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.05  E-value=0.00033  Score=52.56  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|+|||||++.+.+-.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            357899999999999999998643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.04  E-value=0.00036  Score=52.31  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|+.|+|||||++.+.+-
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcC
Confidence            36789999999999999999754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.04  E-value=0.00043  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.|.|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999975

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.03  E-value=0.00037  Score=51.77  Aligned_cols=23  Identities=43%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.03  E-value=0.00036  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|+|||||++.+.+-
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            36889999999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.03  E-value=0.00037  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.|+|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.03  E-value=0.00028  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.02  E-value=0.00025  Score=49.59  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999964

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.02  E-value=0.00035  Score=52.15  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+-.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999998653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.02  E-value=0.00042  Score=51.50  Aligned_cols=22  Identities=41%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.02  E-value=0.00038  Score=52.59  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36789999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.02  E-value=0.00042  Score=51.99  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|+.|+|||||++.+.+-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.02  E-value=0.00037  Score=50.48  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --+.|+|++|+|||||++.+...
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.01  E-value=0.00043  Score=50.38  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.01  E-value=0.00022  Score=52.12  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH-hC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA-YD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~-~~   31 (189)
                      .-++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            467899999999999999998 54

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.01  E-value=0.00039  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.++|+|++|+|||||++.+.+-.
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999997643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.01  E-value=0.0006  Score=52.56  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..++-|.|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.99  E-value=0.00043  Score=52.81  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ..++++|++|+|||||+|.+.+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc
Confidence            3578999999999999999986543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.99  E-value=0.00056  Score=50.47  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|.|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999975

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.99  E-value=0.00041  Score=52.24  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.99  E-value=0.0005  Score=47.92  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.98  E-value=0.00069  Score=51.45  Aligned_cols=24  Identities=21%  Similarity=0.103  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .++..|.|+|++|||||||++.|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999885

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.96  E-value=0.00046  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.95  E-value=0.00047  Score=51.72  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|+.|+|||||++.+.+-
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36789999999999999999754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.00049  Score=51.57  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.94  E-value=0.00062  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      +.-.++++|++||||||+++.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            34578899999999999999996

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.94  E-value=0.00068  Score=47.37  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...|+++|++||||||+.+.|..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.94  E-value=0.0005  Score=50.87  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.94  E-value=0.00056  Score=48.40  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999964

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.93  E-value=0.00045  Score=54.03  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|||||||++.+.+-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            357899999999999999998654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.00024  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.93  E-value=0.00058  Score=50.05  Aligned_cols=30  Identities=27%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+-...-++++.++|++||||||+.++|..
T Consensus         1 ~~~~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            1 MAHHHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --------CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcccccccceeeECCCCCCHHHHHHHHHH
Confidence            555566789999999999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.93  E-value=0.00059  Score=48.05  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.92  E-value=0.0007  Score=48.39  Aligned_cols=24  Identities=17%  Similarity=0.113  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|.|+|++|+|||||++.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.92  E-value=0.00043  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.92  E-value=0.00067  Score=47.36  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+.++|++|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999974

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.91  E-value=0.0056  Score=47.82  Aligned_cols=70  Identities=11%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------------cCCceEEeeccCCCC
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------LISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------~~~~~~~~Sa~~~~~  143 (189)
                      ...+|.+++|....-..+...+..++......  ++|.++|+||+|+..                ..-+++.+||.++.|
T Consensus       128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g  205 (358)
T 2rcn_A          128 AANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG  205 (358)
T ss_dssp             EECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred             HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence            56789888886654223444556666555444  788899999999632                123789999999999


Q ss_pred             HHHHHHHH
Q psy17231        144 VEEMFADI  151 (189)
Q Consensus       144 i~~~~~~i  151 (189)
                      ++++...+
T Consensus       206 l~~L~~~~  213 (358)
T 2rcn_A          206 LKPLEEAL  213 (358)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99876643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.91  E-value=0.0004  Score=51.58  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+..|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.91  E-value=0.00056  Score=50.86  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999999963

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.90  E-value=0.00078  Score=48.61  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++.|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.90  E-value=0.0007  Score=50.48  Aligned_cols=23  Identities=39%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35789999999999999999974

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.88  E-value=0.00056  Score=53.42  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.87  E-value=0.00084  Score=51.91  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...++++|++|+||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999964

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.86  E-value=0.0006  Score=53.38  Aligned_cols=24  Identities=29%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            357899999999999999998653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.00061  Score=53.39  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            357899999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.86  E-value=0.0006  Score=53.34  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.++|+|++|||||||++.+.+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999964

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.86  E-value=0.00039  Score=47.47  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++++|++|+|||||++.+.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.85  E-value=0.00062  Score=53.64  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            357899999999999999998654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.85  E-value=0.00062  Score=47.74  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999964

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.83  E-value=0.00087  Score=49.63  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +..+++.|++|+|||+|++.+...
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            446999999999999999999753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.83  E-value=0.00066  Score=53.36  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            357899999999999999997643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.82  E-value=0.00093  Score=51.12  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...|.|+|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999999975

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.82  E-value=0.00065  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|+.|+|||||++.+.+-
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            36789999999999999999754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.82  E-value=0.00067  Score=53.37  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            57899999999999999998654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.82  E-value=0.00074  Score=46.70  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.82  E-value=0.001  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999964

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.80  E-value=0.00097  Score=50.96  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.++++|++||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45788999999999999999963

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.80  E-value=0.00059  Score=47.44  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.80  E-value=0.00075  Score=50.70  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.79  E-value=0.00043  Score=52.99  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.+.|+|++|+|||||++.+.+-
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            347899999999999999988753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.79  E-value=0.00031  Score=50.44  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999964

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.79  E-value=0.00074  Score=52.22  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999854

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.78  E-value=0.00076  Score=52.86  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|++|+|||||++.+.+-.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            357899999999999999998654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.77  E-value=0.00091  Score=48.53  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999974

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.76  E-value=0.0012  Score=48.39  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|++.|++||||||++++|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.75  E-value=0.00086  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.++|+|++|+|||||++.+.+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            44689999999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.74  E-value=0.001  Score=52.13  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRY   28 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l   28 (189)
                      .+..||+++|.+|||||||++++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45789999999999999999998

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.73  E-value=0.00078  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++|+|++|+|||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999999854

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.72  E-value=0.0013  Score=47.31  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...|+++|++|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.72  E-value=0.00096  Score=48.24  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      --++++|++|+|||||++.+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999999973

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.72  E-value=0.0008  Score=52.05  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.++|+|++|+|||||++.+.+--
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.71  E-value=0.0012  Score=48.87  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +++.|.|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999965

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.71  E-value=0.0014  Score=49.53  Aligned_cols=25  Identities=32%  Similarity=0.238  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999963

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.71  E-value=0.00086  Score=53.07  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|||||||++.+.+-
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            36889999999999999999753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.70  E-value=0.00056  Score=53.30  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            357899999999999999998653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.70  E-value=0.00071  Score=50.43  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=22.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+...|+|.|..||||||+++.|...
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999998743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.69  E-value=0.0012  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.68  E-value=0.0014  Score=50.23  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-|+|+||+|||||||...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45789999999999999999743

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.68  E-value=0.00099  Score=48.66  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +..-|+|.|+.|+|||||++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3567899999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.65  E-value=0.0014  Score=45.24  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999964

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.64  E-value=0.0013  Score=49.30  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4457999999999999999999754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.64  E-value=0.0013  Score=49.92  Aligned_cols=25  Identities=20%  Similarity=0.032  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456777899999999999999753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.64  E-value=0.0013  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..|+++|++||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999975

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.64  E-value=0.0013  Score=49.65  Aligned_cols=25  Identities=36%  Similarity=0.538  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||+|++.+...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999999853

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.63  E-value=0.0015  Score=51.15  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.-.++++|++||||||+++.+.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345788999999999999999963

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.63  E-value=0.0011  Score=52.98  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.++|+|++|+|||||++.+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            35889999999999999999754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.63  E-value=0.0015  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+..+++.|++|+|||+|++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999975

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.62  E-value=0.0016  Score=49.36  Aligned_cols=25  Identities=24%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999987753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.62  E-value=0.0012  Score=46.12  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999964

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.61  E-value=0.0015  Score=44.17  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999998653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0012  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|+|+|++|+||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999964

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.58  E-value=0.00057  Score=53.40  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            357899999999999999998654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.57  E-value=0.0018  Score=46.07  Aligned_cols=21  Identities=43%  Similarity=0.417  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .|.|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999964

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.56  E-value=0.0014  Score=47.20  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +++.|+|.|++||||||+.+.|..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.56  E-value=0.0023  Score=48.53  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999999754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.56  E-value=0.0021  Score=47.97  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45678999999999999999999854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.56  E-value=0.0017  Score=52.75  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +...++|+|++|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345788999999999999999953

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.55  E-value=0.0012  Score=54.04  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ..++|+|++|||||||++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            458999999999999999997543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.55  E-value=0.0015  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .--++++|++|+|||||+..+..
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999986

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.54  E-value=0.0017  Score=49.43  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||+|++.+...
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            3456999999999999999999854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.54  E-value=0.0015  Score=47.18  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999964

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.54  E-value=0.0012  Score=50.74  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .-++|+|+.|+|||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356799999999999999998653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.53  E-value=0.0015  Score=46.52  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.53  E-value=0.0012  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.+++.||||+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999988874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.53  E-value=0.0014  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      --++|+|++|+|||||+..+..
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.53  E-value=0.0016  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|+|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46789999999999999999863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0013  Score=53.27  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++|+|+.|||||||++.+.+-
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            357899999999999999999653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.50  E-value=0.00078  Score=51.16  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.+.|.|.|++||||||+.+.|..
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3556799999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.50  E-value=0.002  Score=45.84  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -++.|.+.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.50  E-value=0.0021  Score=46.50  Aligned_cols=26  Identities=31%  Similarity=0.186  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .|+..-|++.|++|+||||+++.|..
T Consensus         3 ~m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            3 AMTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            36678899999999999999999853

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.48  E-value=0.0088  Score=48.10  Aligned_cols=65  Identities=23%  Similarity=0.297  Sum_probs=37.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh------------------CCCCCC-CCCcccceeeeeEEEEE---ECCeEEEEEEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY------------------DTFISS-SSRKSTLGLDNFNKEYK---VDDRSIQMQLW   64 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~------------------~~~~~~-~~~~~t~~~~~~~~~~~---~~~~~~~~~i~   64 (189)
                      +-.-|.|+|+.++|||+|+|.|..                  ..|... .....|.|+-.....+.   .++....+.+.
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            334555999999999999996641                  122111 11123334333322211   14556789999


Q ss_pred             eCCCccc
Q psy17231         65 DTGGMER   71 (189)
Q Consensus        65 D~~g~~~   71 (189)
                      ||.|...
T Consensus       146 DTEG~~d  152 (457)
T 4ido_A          146 DTQGTFD  152 (457)
T ss_dssp             EECCBTC
T ss_pred             eccCCCC
Confidence            9999643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.48  E-value=0.0026  Score=48.82  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+++.|++|+|||+|++.+...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999999753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.46  E-value=0.0023  Score=49.04  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.-|+|+||+|||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            446889999999999999999743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0023  Score=51.33  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++-.|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.42  E-value=0.0019  Score=50.26  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -++.|+|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.42  E-value=0.0023  Score=50.44  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.-.++++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            345788999999999999999985

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.41  E-value=0.0021  Score=49.69  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999976

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.41  E-value=0.0026  Score=48.89  Aligned_cols=26  Identities=35%  Similarity=0.493  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+++.|++|+|||+|++.+...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHH
Confidence            34467999999999999999999854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.40  E-value=0.0025  Score=46.59  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...|.|+|++||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.40  E-value=0.0019  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.40  E-value=0.002  Score=48.68  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0025  Score=50.97  Aligned_cols=25  Identities=36%  Similarity=0.578  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++--+++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4456999999999999999999853

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0026  Score=50.99  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++--|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            35568999999999999999999853

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.31  E-value=0.0023  Score=51.37  Aligned_cols=24  Identities=42%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -++.|+|++|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.31  E-value=0.002  Score=47.13  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=18.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++..-|++.|++||||||++++|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999999863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.30  E-value=0.0023  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.30  E-value=0.0027  Score=43.17  Aligned_cols=20  Identities=35%  Similarity=0.502  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -.+|+|+.|+|||||+.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999985

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.29  E-value=0.0032  Score=48.65  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +++.|++|+||||+++.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.27  E-value=0.0032  Score=50.21  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.-|+++|++||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999974

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.24  E-value=0.0036  Score=48.64  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.|++|+|||+|++.+...
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.24  E-value=0.0026  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.+.|+|++|+|||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4577999999999999999964

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0029  Score=50.20  Aligned_cols=26  Identities=38%  Similarity=0.447  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++--|++.||||+|||.|++++.+.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            34567999999999999999999853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.23  E-value=0.0028  Score=52.27  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .-.+.++|+.|+|||||++.+.+..
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.22  E-value=0.003  Score=49.27  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.20  E-value=0.0016  Score=43.91  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...|++.|++|+|||++.+.+..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            35699999999999999998874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.20  E-value=0.0033  Score=49.03  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.20  E-value=0.0028  Score=47.60  Aligned_cols=22  Identities=32%  Similarity=0.193  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      --++|+|++|+|||||+..+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.18  E-value=0.0037  Score=47.53  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      +.-.++++|++|+||||++..|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999985

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.17  E-value=0.0035  Score=49.13  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ....+++.|++|+|||++++.+...
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.16  E-value=0.0028  Score=52.78  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.+.++|++|+|||||++.+.+-
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhc
Confidence            347899999999999999999754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.15  E-value=0.0043  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .-.++++|++|+||||++..+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHH
Confidence            4568899999999999999995

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.14  E-value=0.0034  Score=48.96  Aligned_cols=25  Identities=36%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|++.|++|+|||+|++.+...
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.14  E-value=0.0032  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.543  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~   29 (189)
                      --++++|++|+|||||+..+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999988775

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.12  E-value=0.0014  Score=48.67  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+++.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3488999999999999999975

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.11  E-value=0.0032  Score=52.40  Aligned_cols=23  Identities=30%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.++|++|+|||||++.+.+-
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47889999999999999999754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.10  E-value=0.0044  Score=45.41  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...|++-|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999999753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.10  E-value=0.0033  Score=44.98  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ...|+|+|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4578999999999999999998543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.08  E-value=0.003  Score=49.12  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999743

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.07  E-value=0.0043  Score=45.65  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=21.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .|+..-|++.|++|+||||+++.|..
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999999853

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.06  E-value=0.0043  Score=48.36  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||+|++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.06  E-value=0.0038  Score=48.02  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            356899999999999999999754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.06  E-value=0.0037  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.05  E-value=0.0053  Score=47.52  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-|+|+|++|||||||...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999974

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.01  E-value=0.0045  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++.+|++.|++|+|||++.+++..
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999953

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0048  Score=49.25  Aligned_cols=26  Identities=38%  Similarity=0.521  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++--|++.||||+|||+|++++.+.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHH
Confidence            34567999999999999999999853

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.99  E-value=0.0036  Score=51.59  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|+.|+|||||++.+.+..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0052  Score=51.38  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      --.+.|+|+.|+|||||++.+.+...
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            34688999999999999999986543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0043  Score=50.01  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++--|++.||||+|||+|++++.+.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            35668999999999999999999853

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.97  E-value=0.0054  Score=50.61  Aligned_cols=25  Identities=36%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...++++|++|+|||||++.+...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999743

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.96  E-value=0.0043  Score=48.62  Aligned_cols=19  Identities=42%  Similarity=0.679  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999986

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.96  E-value=0.0053  Score=46.95  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ...+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.96  E-value=0.0046  Score=45.89  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ...++|.|++|+|||+|++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            4579999999999999999998653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.95  E-value=0.0065  Score=47.35  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ..+|+++|++|+||||+.+.|.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4679999999999999998874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.94  E-value=0.0046  Score=47.39  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999999754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.94  E-value=0.0048  Score=43.41  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++|+|.+|||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0047  Score=48.16  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++|.|++|+|||+|++.+...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.0036  Score=48.10  Aligned_cols=26  Identities=8%  Similarity=-0.008  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.-.++|.|+||+|||++++.+...
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34568899999999999999999743

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.93  E-value=0.0043  Score=51.91  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.|+|+.|+|||||++.+.+
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhC

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.91  E-value=0.0055  Score=49.25  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...+++.|++|+|||+|++.+...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.91  E-value=0.0045  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.|+|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.90  E-value=0.0045  Score=48.20  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35779999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.90  E-value=0.005  Score=50.78  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.|+|+.|+|||||++.+.+..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.90  E-value=0.0045  Score=50.53  Aligned_cols=22  Identities=45%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999854

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.89  E-value=0.0042  Score=50.29  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-+++++|++|+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.89  E-value=0.0058  Score=49.58  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..++++|++|+|||+|++.+.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999985

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.88  E-value=0.0047  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.+++.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999975

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.88  E-value=0.007  Score=48.79  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...+++.||||+|||+|.+.+..
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHH
Confidence            3456799999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-30
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-30
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-28
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-26
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-25
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-25
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-25
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-25
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-24
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-24
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-23
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-23
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-22
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-21
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-21
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-20
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-20
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-20
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-19
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-18
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-18
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-18
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-18
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-16
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-16
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-16
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-15
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	9e-15
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-14
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-14
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-14
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-14
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-13
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-13
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-13
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-13
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-12
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-12
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-11
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-11
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-10
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-10
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-10
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-09
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-08
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-08
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-07
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (269), Expect = 1e-30
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGK+ +  R++ D F S+    ST+G+D   +  ++D + I++Q+WDT G 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  + GN    ++
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 125

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQL 155
               +                +TS K    VE  F  + R +
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 7e-30
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGK+ L RR+    F       +T+G+D   K  +++   +++Q+WDT G 
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQCHN 128
           ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L GN      
Sbjct: 65  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 124

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQLILSNR 160
               +                +TS K  + VE++F D+  +LI   R
Sbjct: 125 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ GVGKS L  R+  D F  S    +T+G+D   K   ++ + +++Q+WDT G 
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
           ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A +    L   N      
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                         L     ++S K  + V E+F  + + +
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 2e-26
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           +   K+++ GE GVGKSSL  R+  DTF    +  +T+G+D   K   VD    ++ +WD
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWD 62

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE---NAKIFLCGN 122
           T G ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY        + +   
Sbjct: 63  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 122

Query: 123 NEQCHNLISST-------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLE 164
            ++ +  +                 + S KT +GV+  F ++  + I+      E
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK-IIQTPGLWE 176

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.7 bits (237), Expect = 1e-25
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G  GVGKS L  R++ DT+ +     ST+G+D   K  ++D +++++Q+WDT G 
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV-TYAENAKIFLCGNNEQCHN 128
           ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI           L GN     +
Sbjct: 66  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 125

Query: 129 LIS---------------STYKTSCKTGEGVEEMFADIGRQLI 156
                                +TS      VE+ F  + RQ+ 
Sbjct: 126 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 2e-25
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGKS+L  R+  + F   S  KST+G++   +  +VD ++I+ Q+WDT G 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
           ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L GN      
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 123

Query: 123 ---------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
                             S  +TS      VEE F +I  ++ 
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (232), Expect = 4e-25
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G+ GVGK+ L  R+    F++ +   ST+G+D  NK   VD   +++Q+WDT G 
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA  +  + L GN     +
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQL 155
                                +TS KTG  V+  F  I ++L
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.4 bits (231), Expect = 6e-25
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGK+S   RYA D+F  +    ST+G+D   K    +D+ I++Q+WDT G 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L GN     +
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQLI 156
               +               ++ S K    V++ F  +   + 
Sbjct: 125 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-24
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F++      T+G++   +  +V  + I++Q+WDT G 
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L GN      
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQL 155
               T                + S KTGE VE+ F +  +++
Sbjct: 124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 4e-24
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  GE  VGK+SL  R+ YD+F ++   ++T+G+D  +K   ++DR+I++QLWDT G 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 59

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L GN     +
Sbjct: 60  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 119

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQL 155
               +                +TS K G  V+++F  +   L
Sbjct: 120 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 2e-23
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G  G GKS L  ++    F   S    T+G++  +K   V  + +++Q+WDT G 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNNEQCHN 128
           ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +     ++N  I LCGN +    
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 124

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQLI 156
               T                +TS  TGE VEE F    R+++
Sbjct: 125 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 3e-23
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K I+ G+ GVGKS L  ++    F        T+G++   +   +D + I++Q+WDT G 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
           E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L GN     +
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQLI 156
                                +TS KT   VEE F +  +++ 
Sbjct: 123 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 7e-22
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 18/167 (10%)

Query: 5   KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
           K+ + K++L GE  VGKSSL  R+    F      +ST+G     +   +DD +++ ++W
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 65  DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNN 123
           DT G ER  S+   YY+ A+AAI+V+ + N  SF      +       + N  I L GN 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 124 EQCHNLISST---------------YKTSCKTGEGVEEMFADIGRQL 155
               N  +                  +TS KT   V E+F  I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 83.4 bits (205), Expect = 4e-21
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 20/167 (11%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           +   KVI+ G  GVGKS+L  ++ YD F+           D++ K+  +D   +Q+ + D
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILD 58

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNN 123
           T G E  A+I  +Y++  E  + VFS+    SF   +    +I+     EN    L GN 
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 124 EQCHNLISST---------------YKTSCKTGEGVEEMFADIGRQL 155
               +    +                +TS KT   V+++F D+ R++
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 8e-21
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L GE  VGK+SL  RY  + F       +TLG     K+  +  + + + +WDT G 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129
           ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N        N+     
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 130 ISST----------------YKTSCKTGEGVEEMFADIGRQLI 156
                               Y TS K  +G+EE+F D+ +++I
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 1e-20
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
           K++  G+ GVGK++   RY  + F       +T+G+D   K    + +           +
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 60  QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKI 117
            +QLWDT G ER  S+T+++++ A   +L+F L +  SF  +   + ++      EN  I
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 124

Query: 118 FLCGNNEQCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLI 156
            L GN     +                    ++TS  TG+ VE+    +   ++
Sbjct: 125 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 1e-20
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 22/169 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVIL G+ GVGKSSL  RY  + F +      T+G++  NK+ +VD   + MQ+WDT G 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-----NAKIFLCGNNE 124
           ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+     +    + GN  
Sbjct: 66  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 125

Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILS 158
                  ST               ++TS K    V   F +  R+++ +
Sbjct: 126 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.6 bits (200), Expect = 2e-20
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV L G+ GVGKSS+  R+  D+F  +     T+G     K  +  +   +  +WDT G+
Sbjct: 6   KVCLLGDTGVGKSSIMWRFVEDSFDPNI--NPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI-VTYAENAKIFLCGNNEQCHN 128
           ER  ++   YY+ + AAI+V+ +    +F  L   + E+      +  + + GN     +
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 129 LISST---------------YKTSCKTGEGVEEMFADIGRQL 155
           +                    +TS K    + E+F +I R++
Sbjct: 124 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 3e-20
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV++ G  GVGKS+L  ++   TFI           D + KE +VD     +++ DT G 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKY---DPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNN---- 123
           E+ AS+   Y K  +  ILV+SL N  SF  +     +I+     E   + L GN     
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 124 -----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                                 +TS K+   V+E+FA+I RQ+
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           V   K++L GE  VGKSS+  R+  + F  +   + T+G     +   +++ +++ ++WD
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWD 58

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125
           T G ER AS+   YY+ A+AA++V+ +    SF      + E+   A    I     N+ 
Sbjct: 59  TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKI 118

Query: 126 CHNLISST-------------------YKTSCKTGEGVEEMFADIGRQLIL 157
                                      ++TS KTGE V ++F  IG ++ L
Sbjct: 119 DMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 2e-19
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 7   PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
            E K+++ G  GVGKS+L  +   + F+           D++ K+  +D  +  + + DT
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVIDGETCLLDILDT 58

Query: 67  GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNE 124
            G E  +++   Y +  E  + VF+++N  SF  + Q+  +I      ++  + L GN  
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118

Query: 125 QCHNLISST--------------YKTSCKTGEGVEEMFADIGRQL 155
                   +               +TS KT +GVE+ F  + R++
Sbjct: 119 DLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 25/174 (14%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSI-QMQLWDTGG 68
           KVI+ G+ GVGK+SL  RY  D +      K+T+G D   KE  VD   +  MQ+WDT G
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 69  MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNN 123
            ER  S+  ++Y+ A+  +LV+ + NA+SF  +     E + +A     E     + GN 
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 124 EQCHNLISST-----------------YKTSCKTGEGVEEMFADIGRQLILSNR 160
                                      + TS K    V+  F +I R  +  N+
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G   VGKSS+ +RY    F      K T+G+D   ++ +V+D  +++ LWDT G 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129
           E   +IT +YY+ A+A +LVFS  +  SF  +S    ++V    +    L  N     + 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 130 ISST---------------YKTSCKTGEGVEEMFADIGRQLI 156
                              Y+TS K    V E+F  +  + +
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 23/176 (13%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KVI+ G+ GVGK+SL  +Y    F +    K+T+G D   KE  VDDR + MQ+WDT G 
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
           ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN    + GN  
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
              N   +T               ++TS K    VE+ F  I R   L   + +EL
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVEL 176

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 5e-18
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G  GVGKS+L  ++    F+S          D++ K   VD    ++ + DT G 
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYFVSDYDPT---IEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN----- 122
           E   ++   Y +     +LVF++++  SF+ + +   +I+     ++  + L GN     
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 123 ----------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                     +    +   + ++ S K    V+E F  + R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 9e-18
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 21/164 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G  GVGKS+L  ++    F+           D++ K+ +VD +   +++ DT G 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNEQCH 127
           E+  ++   Y K  +   LV+S+   ++F+ L     +I+     E+  + L GN     
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 NLISST----------------YKTSCKTGEGVEEMFADIGRQL 155
           +                      ++S K+   V E+F D+ RQ+
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           ++++ G    GK+++  +              T           V+ ++I   +WD GG 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 54

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNEQCH 127
           +++  +   Y++  +  I V   ++    +   + L+ ++      +A + +  N +   
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 128 NLISST------------------YKTSCKTGEGVEEMFADIGRQL 155
           N +++                     T   +G+G+ E    +  QL
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 4e-16
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G+ G GK++  +R+    F       +TLG++     +  +   I+  +WDT G 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
           E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN       
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122

Query: 123 ------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
                            Y  S K+    E+ F  + R+LI      LE 
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI--GDPNLEF 169

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 8e-16
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 32/176 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F            DN++    VD + + + LWDT G 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN----- 123
           E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L G       
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 124 ----------------------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
                                      + +  Y + S  T  G++ +F +  R ++
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 21/168 (12%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           +P  K+++ G+ GVGKS+L  ++    F+           D++ K  ++D++   + + D
Sbjct: 2   LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDY---DPTIEDSYLKHTEIDNQWAILDVLD 58

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNN 123
           T G E  +++   Y +  +  ++V+S+ + ASF  + +    I+   +  +  + L  N 
Sbjct: 59  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 118

Query: 124 ---------------EQCHNLISSTYKTSCKTGE-GVEEMFADIGRQL 155
                          E          +TS K     V++ F D+ R +
Sbjct: 119 VDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 9e-15
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+I+ G+  VGK+ L  R+    F   +  ++T+G+D   +   +D   I++QLWDT G 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 70  ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQC 126
           ER   S+   YY+   A + V+ + N ASFH L   + E   +    +    L GN    
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 127 HNLISST---------------YKTSCKT---GEGVEEMFADI 151
            + I                  ++TS K     + VE +F  +
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           ++++ G  GVGKS+L  ++    F++          D++ K+  +DDR+ ++ + DT G 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDY---DPTIEDSYTKQCVIDDRAARLDILDTAGQ 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV----------------TYAE 113
           E   ++   Y +  E  +LVFS+ +  SF  + +   +I+                   +
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 114 NAKIFLCGNNEQCHNLISSTY-KTSCKTGEGVEEMFADIGRQL 155
           + +       +Q    +  TY + S K    V++ F ++ R +
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-14
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 24/178 (13%)

Query: 6   VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
           +PE ++ + G+   GKSSL  R+   ++      +S    + + KE  VD ++  + + +
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES----EQYKKEMLVDGQTHLVLIRE 58

Query: 66  TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125
             G         +         L       A   +  Q             + L G  ++
Sbjct: 59  EAGAPDAKFSGWADA-VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117

Query: 126 CHNLISST------------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
                                     Y+T    G  V+ +F ++ ++ +++ R + +L
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK-VVTLRKQQQL 174

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 3e-14
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 32/176 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   Y  + F S      T+  DN+     +      + L+DT G 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVF-DNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
           E    +    Y   +  ++ FS+ + +SF +V  + + EI  +       L G       
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 123 -----------------NEQCHNL-----ISSTYKTSCKTGEGVEEMFADIGRQLI 156
                             E    L          + S  T +G++ +F +     +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 9e-14
 Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V + G  GVGKSSL  R+   TF  S         D + +    D     +Q+ DT G 
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESY---IPTVEDTYRQVISCDKSICTLQITDTTGS 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQC 126
            +  ++         A ILV+S+ +  S   L      + EI    E+  I L GN    
Sbjct: 61  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 120

Query: 127 HNLISST---------------YKTSCKTGEGVEEMFADIGRQL 155
                                  +TS K    V+E+F ++    
Sbjct: 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 1e-13
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+ + G   VGKSSL  ++    F+ S         + F K   V+ +   +QL DT G 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCH 127
           +  +    +Y       ILV+S+ +  SF V+     +++         I L GN +  H
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 NLISST---------------YKTSCKTGEGVEEMFADIGRQ 154
                +                ++S K  +   ++F  I  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 1e-13
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 32/176 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK+ L    + D F        T+  +N+  + +VD + +++ LWDT G+
Sbjct: 4   KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128
           E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L GN +   N
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 LISSTYK----------------------------TSCKTGEGVEEMFADIGRQLI 156
              +  +                             S KT +GV E+F    R  +
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++++ G    GK+++  +      +++                 V  ++++  +WD G
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-------VGFNVETVTYKNVKFNVWDVG 64

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
           G +++  +   YY   +  I V    +        Q L  I+   E  +A I +  N + 
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 124

Query: 126 CHNLISST------------------YKTSCKTGEGVEEMFADIGRQL 155
             + +                       +   +G+G+ E    +    
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 3e-13
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 33/177 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K+++ G+   GK++L   +A D F  +         +N+   +++D + I++ LWDT G 
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENY---VPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
               ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L G       
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 123 -----------------NEQCHNL-----ISSTYKTSCKTGE-GVEEMFADIGRQLI 156
                             +Q  N+      ++  + S    E  V ++F       +
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 59.2 bits (142), Expect = 6e-12
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 27/168 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++++ G  G GK+++  R      +++   K T+G +     YK    ++++ +WD G
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTT---KPTIGFNVETLSYK----NLKLNVWDLG 69

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC------- 120
           G   +      YY    A I V    +       S+ L  ++   E     L        
Sbjct: 70  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 129

Query: 121 -------------GNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
                         N  +  +   S   +S   GEG+ E    +   +
Sbjct: 130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 7e-12
 Identities = 38/166 (22%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           +V+L GE GVGKS+L   +A     S  S    LG D + +   VD  S  + L D    
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLE---IVTYAENAKIFLCGNNEQC 126
           +        +      A L+       +    +  L          E+  I L GN    
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 127 HNLISST---------------YKTSCKTGEGVEEMFADIGRQLIL 157
                 +                +TS      V+E+F  I RQ+ L
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K ++ G+  VGK+ L   YA D F            D++     V  +   + L+DT G 
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN----- 123
           E    +    Y   +  ++ FS+ N ASF +V  + + E+  YA N    L G       
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127

Query: 124 ------------------EQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLI 156
                             EQ   L          + S  T +G++ +F +    ++
Sbjct: 128 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-11
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV+L G  GVGKS+L R +           ++      +++   VD     + ++D    
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED----GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF--LCGNNEQCH 127
           +    +        +A ++V+S+ +  SF   S+  +++    +   +   L GN     
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 128 NLISSTYK---------------TSCKTGEGVEEMFADIGRQLILSNRSR 162
                +                 TS      V+ +F  + RQ+ L   S+
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-11
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K+ + G  GVGKS+L  R+    FI          L++  +     D  +        
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT----LESTYRHQATIDDEVVSMEILDT 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNN-- 123
             +        + ++ E  +LV+ + +  SF  +      +    +  N  + L GN   
Sbjct: 58  AGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 117

Query: 124 -------------EQCHNLISSTYKTSCKTGEG-VEEMFADIGRQLI 156
                        +    L  + Y+ S  TGEG + E+F ++ R++ 
Sbjct: 118 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++++ G  G GK+++  R              T           V  ++++ Q+WD G
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEV-------VTTIPTIGFNVETVTYKNLKFQVWDLG 57

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
           G+  +      YY   +A I V    +     +    L+ ++   E  K  L     +  
Sbjct: 58  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 117

Query: 128 NLISST--------------------YKTSCKTGEGVEEMFADIGRQL 155
              + T                    +KTS   G G++E    +   L
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++++ G    GK+++ +++  +          T+          ++ R  ++ +WD G
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-------DTISPTLGFNIKTLEHRGFKLNIWDVG 54

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125
           G + + S   +Y++  +  I V    +        + L  ++       A + +  N + 
Sbjct: 55  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 114

Query: 126 CHNLISST------------------YKTSCKTGEGVEEMFADIGRQL 155
               +S                       S  TGE +      +   +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 21/166 (12%), Positives = 43/166 (25%), Gaps = 34/166 (20%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++  G    GK++L      D         +TL         ++   +I+   +D GG 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-------ATLQPTWHPTSEELAIGNIKFTTFDLGGH 54

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129
            +   +   Y+      + +    +   F      L  +   AE   +       +    
Sbjct: 55  IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 114

Query: 130 ISST---------------------------YKTSCKTGEGVEEMF 148
            + +                           +  S     G  E F
Sbjct: 115 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E KVI+ G    GK+++  +++ +                 +   ++   + +  +WD G
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMN-------EVVHTSPTIGSNVEEIVINNTRFLMWDIG 67

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
           G E + S  ++YY   E  I+V    +     V  + L +++ + +  K  L     +  
Sbjct: 68  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 127

Query: 128 NLISST--------------------YKTSCKTGEGVEEMFADIGRQL 155
                T                          TGEG+ +    +  +L
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 27/175 (15%)

Query: 1   MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
           + S    E +++L G    GK++L ++ A +     S    T G +  + + +      +
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQ----GFK 61

Query: 61  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIF 118
           + +WD GG  ++     SY++  +  I V    +   F    Q L E++   +     + 
Sbjct: 62  LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121

Query: 119 LCGNNEQCHNLISST------------------YKTSCKTGEGVEEMFADIGRQL 155
           +  N +       ++                     S  TGEGV++    + + +
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 10/131 (7%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           K++L G    GKS+  ++           +  T G+     EY  + +++  ++ D GG 
Sbjct: 4   KILLLGAGESGKSTFLKQMRII-----HGQDPTKGI----HEYDFEIKNVPFKMVDVGGQ 54

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFLCGNNEQCHN 128
                     +    + + + S        +  +    +         I           
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 129 LISSTYKTSCK 139
           ++        +
Sbjct: 115 ILFLNKTDLLE 125

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 8e-08
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K++L G    GKS+  ++          S   T G+     EY  D +S+  ++ D G
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG----SGVPTTGII----EYPFDLQSVIFRMVDVG 53

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHV 100
           G           ++   + + + +L       V
Sbjct: 54  GQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 86

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 8e-08
 Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 26/168 (15%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E ++ L G    GK++     A   F                   K+   ++ ++LWD G
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT------VGFNMRKITKGNVTIKLWDIG 55

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125
           G  R  S+   Y +   A + +    +          L  ++     +   + + GN   
Sbjct: 56  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 115

Query: 126 CHNLISST------------------YKTSCKTGEGVEEMFADIGRQL 155
               +                     Y  SCK  + ++     + +  
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 24/185 (12%), Positives = 54/185 (29%), Gaps = 21/185 (11%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
            V+  G    GK+ LF R     +  +    +++   +   +   +  +    +   G  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGHE 58

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASF-----HVLSQHLLEIVTYAENAKIFLCGNNE 124
                +   +   A A + V                L Q L++ +    +  + +  N  
Sbjct: 59  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN-- 116

Query: 125 QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIGTDSFKLGGRG 184
                     K      +  + +   + ++L     +R            T   +LG +G
Sbjct: 117 ----------KQDIAMAKSAKLIQQQLEKELNTLRVTR-SAAPSTLDSSSTAPAQLGKKG 165

Query: 185 SEEVF 189
            E  F
Sbjct: 166 KEFEF 170

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 17/180 (9%), Positives = 44/180 (24%), Gaps = 39/180 (21%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
             K++  G    GK++L      D                     ++    +    +D G
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLG 65

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
           G  +   +  +Y       + +    +        + L  ++T    A + +     +  
Sbjct: 66  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125

Query: 128 NLISST--------------------------------YKTSCKTGEGVEEMFADIGRQL 155
              + +                                +  S    +G  E F  + + +
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
             +++L G    GKS++ ++      +       T G+     E K     +   ++D G
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHVV------LTSGIF----ETKFQVDKVNFHMFDVG 55

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHV 100
           G           +    A I V +  +      
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 88

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           E K++L G    GKS++ ++             +  G+     E     + +  +++D G
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHE-------AGTGI----VETHFTFKDLHFKMFDVG 50

Query: 68  GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH 104
           G           ++   A I   +L +        + 
Sbjct: 51  GQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 87

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 21/162 (12%)

Query: 10  KVILCGEYGVGKSSLFRRYA-YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
           ++++ G+  VGKS+L  R    D  I +       G        ++  R I  ++ DT G
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVT----DIPGTTRDVISEEIVIRGILFRIVDTAG 57

Query: 69  M---------ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL 119
           +               T    + A+  + V    +                        +
Sbjct: 58  VRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKV 117

Query: 120 CGNNEQCHNLISS-------TYKTSCKTGEGVEEMFADIGRQ 154
               +     I +         K S   GEG+E++   I R+
Sbjct: 118 DVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 159

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 20/160 (12%), Positives = 42/160 (26%), Gaps = 15/160 (9%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV++ G    GKSSL    A     +  +  +    D   +   +D   + +        
Sbjct: 3   KVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 70  ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129
                      +  +       +                +     A++          N 
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 130 ISST--------------YKTSCKTGEGVEEMFADIGRQL 155
              T               + S +TGEGV+ +   + + +
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 8   EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
           +  +I+ G    GK+SL      D+   +   +  L           D     + L D  
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS--------AADYDGSGVTLVDFP 54

Query: 68  GMERVASITSSYY-----KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
           G  ++    S Y             +V S  +       ++ L++I++  E++ 
Sbjct: 55  GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 108

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 32/171 (18%)

Query: 10  KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
           KV + G   VGKS+LF           S      G      + +V     +    DT G+
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALVSP---IPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 70  ERVASITSSYYKF----------AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL 119
            R + +     +            +A ++V  LD         Q +  ++     A + +
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126

Query: 120 CGNNEQCHN-------------------LISSTYKTSCKTGEGVEEMFADI 151
               +   +                     S    TS   G  ++ M   +
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.79
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.66
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.64
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.58
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.56
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.55
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.55
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.35
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.11
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.05
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.94
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.94
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.92
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.82
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.63
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.55
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.32
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.08
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.02
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.92
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.86
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.84
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.81
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.8
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.76
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.74
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.73
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.68
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.62
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.61
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.59
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.56
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.55
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.49
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.49
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.46
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.42
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.39
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.39
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.36
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.31
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.31
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.29
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.28
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.28
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.27
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.24
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.23
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.22
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.22
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.19
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.19
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.18
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.17
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.17
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.15
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.14
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.11
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.11
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.09
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.09
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.04
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.04
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.01
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.0
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.96
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.95
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.94
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.91
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.86
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.84
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.84
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.82
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.81
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.8
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.79
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.79
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.76
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.75
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.74
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.73
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.68
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.67
d1okkd2	207	GTPase domain of the signal recognition particle r	96.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.54
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.49
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.43
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.28
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.23
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.23
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.13
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.1
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.08
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.88
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.87
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.86
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.85
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.84
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.83
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.82
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.78
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.77
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.75
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.74
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.69
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.65
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.61
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.58
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.51
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.48
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.41
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.37
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.37
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.36
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.27
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.14
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.14
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.03
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.0
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.76
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.26
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.18
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.13
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.95
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.79
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.78
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.34
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.52
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.17
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.62
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.02
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.52
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.29
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.1
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.01
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.7
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.34
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.6
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.31
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.05
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.74
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.73
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.44
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.41
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.32
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.29
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.83
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.79
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.14
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.47
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	83.25
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.16
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.75
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.57

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-35  Score=206.24  Aligned_cols=148  Identities=30%  Similarity=0.491  Sum_probs=134.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||+++|..+.+...+  .+|++.+.........+..+.+.+||++|++++..++..+++.+++++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~--~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   79 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEE
Confidence            479999999999999999999999887665  778887888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      +|||++++++|+.+..|+..+.+..+++|+++|+||+|+...               ..+|++|||++|.||+++|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          80 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            999999999999999999999888789999999999996432               23899999999999999999999


Q ss_pred             HHHHH
Q psy17231        153 RQLIL  157 (189)
Q Consensus       153 ~~i~~  157 (189)
                      +.+++
T Consensus       160 ~~~lq  164 (164)
T d1z2aa1         160 EKHLQ  164 (164)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98863

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=212.27  Aligned_cols=149  Identities=26%  Similarity=0.478  Sum_probs=131.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||+++|..+.+...+  .+|++.++....+..++..+.+.+||++|+..+..++..+++.+++++
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~--~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCE--EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCccc--ccceeccccccccccccccccccccccccccccceecchhcccccchh
Confidence            589999999999999999999999886655  788888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~  154 (189)
                      +|||++++++|+++..|+..+.+..+++|+++|+||+|+...             ..+|++|||++|.||+++|+++++.
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  160 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  160 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             hccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999999998887789999999999986533             2389999999999999999999998


Q ss_pred             HHHh
Q psy17231        155 LILS  158 (189)
Q Consensus       155 i~~~  158 (189)
                      +.+.
T Consensus       161 l~~~  164 (170)
T d1i2ma_         161 LIGD  164 (170)
T ss_dssp             HHTC
T ss_pred             HccC
Confidence            8753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=209.75  Aligned_cols=154  Identities=24%  Similarity=0.356  Sum_probs=131.2

Q ss_pred             CCCCC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH
Q psy17231          1 MASIK-VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY   79 (189)
Q Consensus         1 m~~~~-~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   79 (189)
                      ||++. ...+||+++|++|||||||+++|..+.+...+  .+|++ +.....+...+..+.+.+||++|++.+..++..+
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~--~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~   77 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS   77 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC--CCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGG
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcC--CCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhc
Confidence            78775 55799999999999999999999999987655  66765 4556666777888999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc----------------------------cC
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN----------------------------LI  130 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~----------------------------~~  130 (189)
                      ++.++++++|||++++++|+++. .|...+....+++|+++|+||+|+..                            ..
T Consensus        78 ~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~  157 (185)
T d2atxa1          78 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  157 (185)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             ccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCC
Confidence            99999999999999999999875 55555555558899999999999642                            12


Q ss_pred             CceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        131 SSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       131 ~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      ..|+||||++|.||+++|+.++++++.
T Consensus       158 ~~~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         158 CCYVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CEEEEecCCCCcCHHHHHHHHHHHHcC
Confidence            489999999999999999999998853

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=204.38  Aligned_cols=151  Identities=23%  Similarity=0.411  Sum_probs=132.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|..+.+....  .++. .+.....+..++..+.+.+||++|++++...+..+++.+++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~--~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--DPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--CTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccc--cccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45689999999999999999999999987765  4443 36666778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+...               ..+|++|||++|.||+++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999999987653  68999999999996532               2388999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy17231        149 ADIGRQLILSN  159 (189)
Q Consensus       149 ~~i~~~i~~~~  159 (189)
                      +++++.+.+.+
T Consensus       161 ~~l~~~i~k~~  171 (173)
T d2fn4a1         161 EQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=203.38  Aligned_cols=151  Identities=34%  Similarity=0.540  Sum_probs=134.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|..+.+....  .++.+.++....+...+..+++.+|||+|++++..++..+++.++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            3589999999999999999999999987766  55666688888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++.+++.+..|+..+.+.. ...|+++|+||+|....               ..+|++|||++|.||+++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999987765 67999999999886532               238999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +++.++...
T Consensus       162 l~~~l~~~~  170 (171)
T d2ew1a1         162 LACRLISEA  170 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            998887653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=202.43  Aligned_cols=147  Identities=22%  Similarity=0.306  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||+++|.+..+...   .++.+ +.+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~---~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~il   77 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE---AEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   77 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC------------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc---CCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhce
Confidence            7999999999999999999998765332   23333 4555677888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      |||++++++|+.+..|+..+....  ..+|+++|+||+|+...               ..+|++|||++|.||+++|+++
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999999988765  56899999999996543               2388999999999999999999


Q ss_pred             HHHHHHhh
Q psy17231        152 GRQLILSN  159 (189)
Q Consensus       152 ~~~i~~~~  159 (189)
                      ++.+..++
T Consensus       158 ~~~i~~~~  165 (168)
T d2gjsa1         158 VRQIRLRR  165 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-34  Score=201.68  Aligned_cols=151  Identities=24%  Similarity=0.406  Sum_probs=132.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      ++|.+||+++|++|||||||++++.++.+...+  .+|.+ +.+......++..+.+.+||++|++.+...+..+++.++
T Consensus         1 ~~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   77 (169)
T d1x1ra1           1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDY--DPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   77 (169)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTC--CTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCccc--Cccee-eccccccccccccccccccccccccccccchhhhhhhcc
Confidence            367899999999999999999999999887665  55655 445566778888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCC-CHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGE-GVEE  146 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~-~i~~  146 (189)
                      ++++|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+...               ..+|++|||+++. ||++
T Consensus        78 ~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1          78 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  157 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHH
Confidence            9999999999999999999999987764  57999999999996433               2389999999986 9999


Q ss_pred             HHHHHHHHHHHh
Q psy17231        147 MFADIGRQLILS  158 (189)
Q Consensus       147 ~~~~i~~~i~~~  158 (189)
                      +|+.+++.+.++
T Consensus       158 ~F~~l~~~i~~~  169 (169)
T d1x1ra1         158 TFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=204.60  Aligned_cols=147  Identities=25%  Similarity=0.446  Sum_probs=126.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      +.||+++|++|||||||+++|..+.+...+  .+|++ +........++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   78 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL   78 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCc--CCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhh
Confidence            579999999999999999999999987665  66765 555566778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHH-HHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeec
Q psy17231         88 LVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~-~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa  138 (189)
                      +|||++++++|+++..|+. .+....++.|+++|+||+|+...                            ..+|+||||
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  158 (177)
T d1kmqa_          79 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA  158 (177)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999999999866554 44444578999999999997421                            127999999


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q psy17231        139 KTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       139 ~~~~~i~~~~~~i~~~i~~  157 (189)
                      ++|.||+++|+.+++++++
T Consensus       159 kt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         159 KTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhC
Confidence            9999999999999998863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=203.86  Aligned_cols=148  Identities=26%  Similarity=0.408  Sum_probs=130.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+++||+++|++|||||||++++..+.+...+  .++++.. ....+..++..+.+.+||++|+..+...+..+++.+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~--~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   77 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG   77 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSC--CCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccce
Confidence            67899999999999999999999999987665  6666634 45556778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +++|||++++++|+++..|+..+.+..  +++|+++|+||+|+...                ..+|++|||++|.||+++
T Consensus        78 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_          78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             eEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHH
Confidence            999999999999999999999887753  67999999999886432                238999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        148 FADIGRQLI  156 (189)
Q Consensus       148 ~~~i~~~i~  156 (189)
                      |+++++++.
T Consensus       158 F~~l~~~i~  166 (167)
T d1c1ya_         158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-34  Score=202.66  Aligned_cols=149  Identities=32%  Similarity=0.499  Sum_probs=132.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|..+.+....  .++.+.+.....+......+.+.+||+||++++..++..+++.++++
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCccc--ccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3589999999999999999999999887666  56666677788888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||+++++++..+..|+..+.... ...|+++|+||+|....               ..+|++|||++|.||+++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999998877665 77999999999886543               238999999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=202.19  Aligned_cols=148  Identities=34%  Similarity=0.460  Sum_probs=131.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||+++|.++.+...+  .++++ +........++..+.+.+||++|++.+...+..+++.+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~   77 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG   77 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCcc--CCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccc
Confidence            67899999999999999999999999887665  55655 5666777888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|.++..|+..+....  +++|+++|+||+|+...               ..+|++|||++|.||+++|
T Consensus        78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f  157 (167)
T d1kaoa_          78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF  157 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred             eeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHH
Confidence            999999999999999999999887754  67999999999996532               2389999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        149 ADIGRQLI  156 (189)
Q Consensus       149 ~~i~~~i~  156 (189)
                      +++++++.
T Consensus       158 ~~i~~~i~  165 (167)
T d1kaoa_         158 AEIVRQMN  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998774

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-34  Score=200.94  Aligned_cols=148  Identities=28%  Similarity=0.502  Sum_probs=133.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||+++|..+.+...+  .+|.+..........++....+.+||++|++++..++..+++.+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNI--NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   79 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccc
Confidence            67899999999999999999999999997765  6777777777888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++|+.+..|+..+.... ++.|+++|+||+|+...               ..+|++|||++|.||+++|.
T Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~  159 (167)
T d1z0ja1          80 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  159 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999999999999998887766 78999999999986432               34889999999999999999


Q ss_pred             HHHHHH
Q psy17231        150 DIGRQL  155 (189)
Q Consensus       150 ~i~~~i  155 (189)
                      +++++|
T Consensus       160 ~l~~~i  165 (167)
T d1z0ja1         160 EISRRI  165 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.5e-34  Score=201.39  Aligned_cols=149  Identities=30%  Similarity=0.473  Sum_probs=128.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .|.+||+++|++|||||||++++..+.+...+  .+|.+.+ +...+..++..+.+.+||++|++++..++..+++.+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~--~~T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~   78 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   78 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCccc--CCccccc-cccccccccccccccccccccccchhhhhhhcccccce
Confidence            57799999999999999999999999987666  6676644 45567788999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|+.+..|+..+.+..  +++|+++|+||+|+...               ..+|++|||++|.||+++|
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  158 (168)
T d1u8za_          79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             eEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999999999988764  68999999999997532               2378999999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        149 ADIGRQLIL  157 (189)
Q Consensus       149 ~~i~~~i~~  157 (189)
                      +++++.+..
T Consensus       159 ~~l~~~i~~  167 (168)
T d1u8za_         159 FDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999998754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=199.93  Aligned_cols=146  Identities=30%  Similarity=0.533  Sum_probs=131.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++.++.+....  .++.+.+........++..+.+.+||++|++++..++..+++.+++++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            589999999999999999999999987776  455555777788888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|+.+..|+..+.+.. +..|+++++||+|+...               ..+|++|||++|.||+++|+++
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999888766 78999999999886432               3489999999999999999999


Q ss_pred             HHHH
Q psy17231        152 GRQL  155 (189)
Q Consensus       152 ~~~i  155 (189)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=202.06  Aligned_cols=149  Identities=30%  Similarity=0.519  Sum_probs=126.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||+++|..+.+...+  .+|.+.+........++..+.+.+||++|++++..++..+++.++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   79 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   79 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCcee
Confidence            4689999999999999999999999987665  67777788888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.... ...|+++|+||+|+...               ..+|++|||++|.||+++|++
T Consensus        80 i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          80 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            99999999999999999998876654 67899999999996532               238999999999999999999


Q ss_pred             HHHHHHH
Q psy17231        151 IGRQLIL  157 (189)
Q Consensus       151 i~~~i~~  157 (189)
                      +++.+++
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-34  Score=201.03  Aligned_cols=151  Identities=35%  Similarity=0.515  Sum_probs=132.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||++++.++.+...+  .++.+.......+..++..+.+.+||++|+++|...+..+++.++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            3589999999999999999999999987766  44445566677788889899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|..+..|+..+.... +++|+++|+||+|+...               ..+|++|||++|.|++++|++
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998876 67999999999997643               238899999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +++.+.+..
T Consensus       161 l~~~i~~~~  169 (175)
T d2f9la1         161 ILTEIYRIV  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-34  Score=200.35  Aligned_cols=145  Identities=33%  Similarity=0.575  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||+++|.++++...+  .++.+..........++..+.+.+||++|++++...+..++..++++++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il   78 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVV   78 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEE
Confidence            69999999999999999999999987766  5666667777777788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      |||++++.+|+++..|+..+.... ++.|+++|+||+|+...               ..+|++|||++|.||+++|++|+
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999999888765 78999999999986532               23889999999999999999999


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      ++|
T Consensus       159 ~~l  161 (164)
T d1yzqa1         159 AAL  161 (164)
T ss_dssp             HHS
T ss_pred             Hhh
Confidence            876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=199.96  Aligned_cols=152  Identities=30%  Similarity=0.448  Sum_probs=130.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||++++.++++...+  .++.+...........+....+.+||++|++.+..++..++..+|++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   79 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   79 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCc--ccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEE
Confidence            3589999999999999999999999987766  44444466666777788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++|+.+..|+..+.+.. +++|+++|+||+|+...               ..+|++|||++|.||+++|.+
T Consensus        80 ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          80 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988875 78999999999986432               348999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy17231        151 IGRQLILSNR  160 (189)
Q Consensus       151 i~~~i~~~~~  160 (189)
                      +++.+.++..
T Consensus       160 i~~~i~~~~~  169 (173)
T d2a5ja1         160 TAKEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=199.46  Aligned_cols=148  Identities=24%  Similarity=0.301  Sum_probs=130.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|.++.+...+  .+|++.++ ...+..++..+.+.+||++|.+++..++..++..+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~   78 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY--DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   78 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCccc--Ccceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhh
Confidence            46789999999999999999999999887665  66766553 5667888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      +++|||++++++|+.+..|+..+.+..  +++|+++|+||+|+...               ..+|++|||++|.||+++|
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f  158 (167)
T d1xtqa1          79 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  158 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence            999999999999999999999987764  67999999999997532               2378999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        149 ADIGRQLI  156 (189)
Q Consensus       149 ~~i~~~i~  156 (189)
                      +.+++.+.
T Consensus       159 ~~li~~~~  166 (167)
T d1xtqa1         159 RRIILEAE  166 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998775

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=200.92  Aligned_cols=154  Identities=33%  Similarity=0.490  Sum_probs=136.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+|+|++|||||||+++|..+.+...+  .+|.+.......+...+..+.+.+|||+|++++..++..+++.+++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCc--CCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            45689999999999999999999999887665  6677767777788888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||+++++++..+..|+..+.+.. .+.|+++|+||+|+...               ...|++|||++|.||+++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            999999999999999999988887655 78999999999886542               23899999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy17231        150 DIGRQLILSNRS  161 (189)
Q Consensus       150 ~i~~~i~~~~~~  161 (189)
                      ++++.+.+....
T Consensus       162 ~l~~~i~~~~~~  173 (194)
T d2bcgy1         162 TMARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHHCCH
T ss_pred             HHHHHHHHHhhh
Confidence            999998876544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=202.67  Aligned_cols=150  Identities=20%  Similarity=0.315  Sum_probs=128.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||+++|..+.+...+  .+|++ +.........+..+.+.+||++|+++|..++..+++.+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~   77 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV   77 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCc--CCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccce
Confidence            56799999999999999999999999987665  67776 4455667778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHH-HHHHHHhCCCCcEEEEeecccccc----------------------------cCCceEEe
Q psy17231         86 AILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGNNEQCHN----------------------------LISSTYKT  136 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~d~~~----------------------------~~~~~~~~  136 (189)
                      +++|||+++++||+++..| ...+....++.|+++|+||.|+..                            ...+|+||
T Consensus        78 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (191)
T d2ngra_          78 FLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC  157 (191)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC
T ss_pred             eecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEE
Confidence            9999999999999999754 444444457899999999999631                            12489999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHh
Q psy17231        137 SCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                      ||++|.||+++|+.+++.+.+.
T Consensus       158 SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHHTSC
T ss_pred             eCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=198.84  Aligned_cols=150  Identities=32%  Similarity=0.523  Sum_probs=133.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||+++|..+.+...+  .++.+.......+..++....+.+||+||++++..++..+++.+++++
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            589999999999999999999999987666  566666767777788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||++++++|..+..|+..+.... +++|+++|+||+|+...               ..+|++|||++|.||+++|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            9999999999999999999988775 68999999999885432               2389999999999999999999


Q ss_pred             HHHHHHhh
Q psy17231        152 GRQLILSN  159 (189)
Q Consensus       152 ~~~i~~~~  159 (189)
                      ++.+.++.
T Consensus       163 ~~~i~~~~  170 (174)
T d2bmea1         163 ARKILNKI  170 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=198.22  Aligned_cols=149  Identities=23%  Similarity=0.426  Sum_probs=127.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      .++||+++|++|||||||++++..+.+...+  .+|.+ +.....+..++..+.+.+||++|..++...+..+++.++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDY--DPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGF   80 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSC--CTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCccc--Ccccc-cceeeeeeecccccccccccccccccccccccccccccceE
Confidence            4599999999999999999999999887665  55655 56667778889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      ++|||++++++|+.+..|+..+.+..  ...|+|+|+||+|+...               ..+|++|||++|.||+++|+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~  160 (171)
T d2erya1          81 LLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFH  160 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999999999877663  67999999999886432               23899999999999999999


Q ss_pred             HHHHHHHHh
Q psy17231        150 DIGRQLILS  158 (189)
Q Consensus       150 ~i~~~i~~~  158 (189)
                      ++++.+.+.
T Consensus       161 ~l~~~i~k~  169 (171)
T d2erya1         161 ELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=200.95  Aligned_cols=150  Identities=24%  Similarity=0.389  Sum_probs=129.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      +.+.+||+++|++|||||||+++|..+.+...+  .+|++ +.....+..++..+.+.+||++|++.+...+..+++.++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~--~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   78 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD   78 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC--CCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccc--cccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccc
Confidence            567899999999999999999999999987665  66765 555566778899999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHH-HHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEE
Q psy17231         85 AAILVFSLDNAASFHVLSQ-HLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYK  135 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~  135 (189)
                      ++++|||++++++|+++.. |...+.....++|+++|+||+|+...                            ..+|+|
T Consensus        79 ~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E  158 (183)
T d1mh1a_          79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             eeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEE
Confidence            9999999999999999965 55555555578999999999885311                            147999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHH
Q psy17231        136 TSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                      |||++|.||+++|+.+++.+++
T Consensus       159 ~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         159 CSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cCCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=197.45  Aligned_cols=149  Identities=26%  Similarity=0.381  Sum_probs=130.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      |+.+||+++|++|||||||+++|.++.+...+  .++.+... .......+..+.+.+||++|++.+...+..+++.+++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~   77 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   77 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSC--CCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCcc--CCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccc
Confidence            57899999999999999999999999987655  56665444 4445677888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++.+|+.+..|+..+.+..  +++|+++|+||+|+...              ..+|++|||++|.||+++|+
T Consensus        78 ~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_          78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             cceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Confidence            999999999999999999999988764  67999999999996432              23899999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        150 DIGRQLIL  157 (189)
Q Consensus       150 ~i~~~i~~  157 (189)
                      ++++.+.+
T Consensus       158 ~i~~~i~~  165 (166)
T d1ctqa_         158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=198.29  Aligned_cols=149  Identities=34%  Similarity=0.496  Sum_probs=133.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      ...+||+++|++|||||||+++|..+.+....  .++.+.+............+.+.+||++|++++..++..+++.+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   81 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcce
Confidence            45689999999999999999999999987766  6677777777788888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA  149 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~  149 (189)
                      +++|||++++++|+++..|+..+.+.. ++.|+++|+||+|+...               ..+|++|||++|.||+++|+
T Consensus        82 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~  161 (170)
T d1r2qa_          82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHH
Confidence            999999999999999999999887765 78999999999996432               23899999999999999999


Q ss_pred             HHHHHHH
Q psy17231        150 DIGRQLI  156 (189)
Q Consensus       150 ~i~~~i~  156 (189)
                      ++++.|.
T Consensus       162 ~l~~~i~  168 (170)
T d1r2qa_         162 AIAKKLP  168 (170)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHHh
Confidence            9988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=200.59  Aligned_cols=147  Identities=27%  Similarity=0.322  Sum_probs=126.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.++.+...+  .+|++ +........++..+.+.+||++|++.+...+..+++.++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~--~~T~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~   77 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVE-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAF   77 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--Cccee-eccccceeeccccceeccccccccccccccccccccceeEE
Confidence            4689999999999999999999999887655  67776 34455667788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      ++|||++++++|+.+..|+..+.+..   .++|+++|+||+|+...               ..+|++|||++|.||+++|
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f  157 (171)
T d2erxa1          78 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF  157 (171)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999999998876642   67999999999997432               2389999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        149 ADIGRQLI  156 (189)
Q Consensus       149 ~~i~~~i~  156 (189)
                      +.+++.+.
T Consensus       158 ~~l~~~~~  165 (171)
T d2erxa1         158 QELLNLEK  165 (171)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHH
Confidence            99987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-34  Score=200.85  Aligned_cols=151  Identities=30%  Similarity=0.472  Sum_probs=106.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|.+|||||||+++|.++.+....  .+|++.+.....+..++..+.+.+||+||++.+..++..+++.++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--CccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            4589999999999999999999998886555  67777788888889999899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++.+|+.+..|+..+.... .+.|+++|+||+|....               ..+|++|||++|.||+++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999987665 78999999999885432               238899999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +++.+..+.
T Consensus       163 l~~~i~~k~  171 (173)
T d2fu5c1         163 LARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999886553

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-33  Score=198.14  Aligned_cols=148  Identities=20%  Similarity=0.390  Sum_probs=126.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      ++||+++|++|||||||++++..+.+...+  .+|++ +.....+..++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   78 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   78 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCcc--CCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhh
Confidence            589999999999999999999999997665  66665 455556677888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHH-HHHhCCCCcEEEEeeccccccc----------------------------CCceEEeec
Q psy17231         88 LVFSLDNAASFHVLSQHLLE-IVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSC  138 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~-~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa  138 (189)
                      +|||+++++||+.+..|+.. +....+++|+++||||+|+...                            ...|+||||
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SA  158 (179)
T d1m7ba_          79 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  158 (179)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             eeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeC
Confidence            99999999999999765554 4445589999999999996421                            247999999


Q ss_pred             cCCCC-HHHHHHHHHHHHHHh
Q psy17231        139 KTGEG-VEEMFADIGRQLILS  158 (189)
Q Consensus       139 ~~~~~-i~~~~~~i~~~i~~~  158 (189)
                      ++|.| ++++|+.+++.++++
T Consensus       159 k~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhcC
Confidence            99985 999999999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-32  Score=196.99  Aligned_cols=158  Identities=34%  Similarity=0.505  Sum_probs=138.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|.+|||||||++++.++.+...+  .+|++.+.........+..+.+.+||++|..++...+...+..+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   79 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCc--CCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE
Confidence            479999999999999999999999987665  678887888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +|||.+++.++..+..|+..+....     .++|+++|+||+|+...               ..+|++|||++|.||+++
T Consensus        80 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          80 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             EeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            9999999999999999999887753     46899999999996432               238999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhh
Q psy17231        148 FADIGRQLILSNRSRLELQT  167 (189)
Q Consensus       148 ~~~i~~~i~~~~~~~~~~~~  167 (189)
                      |+++++.+.+++......+.
T Consensus       160 f~~l~~~i~~~~~~~~~~~~  179 (184)
T d1vg8a_         160 FQTIARNALKQETEVELYNE  179 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccccCC
Confidence            99999998887665544433

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=194.02  Aligned_cols=147  Identities=31%  Similarity=0.536  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      ..+||+++|++|||||||++++.++.+...+  .+|.+.++....+...+..+.+.+||++|++++..++..++..++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~--~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAA   79 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccc--cccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceE
Confidence            3589999999999999999999999997766  67777788888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++|||++++++|+.+..|+..+.... ...|+++++||+|+...                  ..+|++|||++|.||+++
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          80 LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            99999999999999999998877765 67999999999886432                  238999999999999999


Q ss_pred             HHHHHHHH
Q psy17231        148 FADIGRQL  155 (189)
Q Consensus       148 ~~~i~~~i  155 (189)
                      |+.|+++|
T Consensus       160 F~~i~~~i  167 (170)
T d1ek0a_         160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            99988765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=192.96  Aligned_cols=148  Identities=26%  Similarity=0.398  Sum_probs=124.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++..+.|...+  .+|++.++. .....++..+.+.+||++|++.+. ....+++.+++++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~--~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~i   77 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFV   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcc--CCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccce
Confidence            479999999999999999999999987765  677776654 444567888999999999998764 5567888999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCC-CHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGE-GVEEMFA  149 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~-~i~~~~~  149 (189)
                      +|||++++++|..+..|+.......  .+.|+++|+||+|+...               ..+|++|||++|. ||+++|.
T Consensus        78 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~  157 (168)
T d2atva1          78 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  157 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             eecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHH
Confidence            9999999999999988876554432  68999999999997532               2389999999998 6999999


Q ss_pred             HHHHHHHHhh
Q psy17231        150 DIGRQLILSN  159 (189)
Q Consensus       150 ~i~~~i~~~~  159 (189)
                      .+++.+.+++
T Consensus       158 ~l~~~i~~~r  167 (168)
T d2atva1         158 ELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=193.52  Aligned_cols=149  Identities=30%  Similarity=0.517  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      -+||+++|++|||||||++++..+++...+  .+|.+.+.....+..++..+++.+||+||++.+..++..+++.+++++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc--CCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            479999999999999999999999987665  677777888888888998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      +|||++++++++.+..|+..+.... ...|++++++|.|....              ..+|++|||++|.||+++|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          80 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999988887776 67899999999775432              23899999999999999999999


Q ss_pred             HHHHHh
Q psy17231        153 RQLILS  158 (189)
Q Consensus       153 ~~i~~~  158 (189)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=193.43  Aligned_cols=148  Identities=36%  Similarity=0.573  Sum_probs=122.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||++++..+.+.... ..++++.+.....+..++..+.+.+|||+|++.+..++..+++.+++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccc-ccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            589999999999999999999998875443 2455667888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI  151 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i  151 (189)
                      +|||+++++++..+..|+..+.... ...|+++|+||+|....               ..+|++|||++|.||+++|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999999999998877765 67899999999775432               2399999999999999999999


Q ss_pred             HHHHH
Q psy17231        152 GRQLI  156 (189)
Q Consensus       152 ~~~i~  156 (189)
                      ++.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=194.26  Aligned_cols=152  Identities=34%  Similarity=0.537  Sum_probs=131.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ++.+.+||+++|++|||||||+++|..+.+...+  .+|++...........+..+.+.+||++|..++...+...+..+
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   79 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   79 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhcc
Confidence            5677899999999999999999999999987665  66677677777888888899999999999999988999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~  143 (189)
                      +++++|||++++.+|+.+..|+..+....     .+.|+++|+||+|+...               ..+|++|||++|.|
T Consensus        80 ~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~g  159 (174)
T d1wmsa_          80 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN  159 (174)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             ceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcC
Confidence            99999999999999999999998887653     57999999999886431               23899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLIL  157 (189)
Q Consensus       144 i~~~~~~i~~~i~~  157 (189)
                      |+++|+++++.++.
T Consensus       160 I~e~f~~l~~~il~  173 (174)
T d1wmsa_         160 VAAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-32  Score=193.00  Aligned_cols=151  Identities=34%  Similarity=0.521  Sum_probs=132.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.++.+....  .++.+.......+..++..+.+.+||+||++++..++..++..++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            4689999999999999999999999987776  44445566667778888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc--------------cCCceEEeeccCCCCHHHHHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGVEEMFAD  150 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i~~~~~~  150 (189)
                      ++|||++++++++.+..|+..+.+..  ...|+++++||.|...              ...+|++|||++|.||+++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999987754  5699999999977532              2348999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17231        151 IGRQLILSN  159 (189)
Q Consensus       151 i~~~i~~~~  159 (189)
                      +++++.+..
T Consensus       164 l~~~l~~~p  172 (177)
T d1x3sa1         164 LVEKIIQTP  172 (177)
T ss_dssp             HHHHHHTSG
T ss_pred             HHHHHccCc
Confidence            999998653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-32  Score=193.10  Aligned_cols=150  Identities=34%  Similarity=0.537  Sum_probs=114.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      .+||+++|++|||||||+++|.++++...+  .++.+.......... +.....+.+||++|++++...+..+++.++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   79 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   79 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCcc--CcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceE
Confidence            589999999999999999999999887665  445444444444433 34456789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc-----------------CCceEEeeccCCCCH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGV  144 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i  144 (189)
                      ++|||++++.+|+.+..|+..+....     .++|+++|+||+|+...                 ..+|++|||++|.||
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          80 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999887653     47899999999996421                 138999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy17231        145 EEMFADIGRQLILSN  159 (189)
Q Consensus       145 ~~~~~~i~~~i~~~~  159 (189)
                      +++|+++++.+++++
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-33  Score=197.37  Aligned_cols=152  Identities=28%  Similarity=0.444  Sum_probs=127.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC----------CeEEEEEEEeCCCccccccchH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD----------DRSIQMQLWDTGGMERVASITS   77 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   77 (189)
                      .+||+++|++|||||||+++|.++.+...+  .++.+.++....+..+          ...+.+.+||++|+++|..++.
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEE--EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCcc--CCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            589999999999999999999999886655  5555545545444332          2347899999999999999999


Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT  140 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~  140 (189)
                      .++++++++++|||++++++|+.+..|+..+....  ..+|+++|+||+|+...               ..+|++|||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999999999999999999998776553  67899999999886432               23899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhh
Q psy17231        141 GEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       141 ~~~i~~~~~~i~~~i~~~~~~  161 (189)
                      |.||+++|+++++.+.++..+
T Consensus       163 ~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999998866443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-31  Score=187.70  Aligned_cols=149  Identities=22%  Similarity=0.415  Sum_probs=124.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE   84 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   84 (189)
                      .+|.+||+++|++|||||||++++.++.+...   .++.+ +.+...+..++..+.+.+||++|+..+     .+++.+|
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~---~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad   72 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL---EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWAD   72 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC---CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc---CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccc
Confidence            57889999999999999999999999988543   33333 445666788899999999999998764     4788999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc------------------CCceEEeeccCCC
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGE  142 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~  142 (189)
                      ++++|||++++++|+.+..|+..+....    ..+|+++|+||.|+...                  ..+|++|||++|.
T Consensus        73 ~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1          73 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             eeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence            9999999999999999999999887653    57899999998664211                  2388999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhh
Q psy17231        143 GVEEMFADIGRQLILSNRSR  162 (189)
Q Consensus       143 ~i~~~~~~i~~~i~~~~~~~  162 (189)
                      |++++|..+++.+...+.+.
T Consensus       153 ~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             THHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhhc
Confidence            99999999999998877554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-32  Score=190.86  Aligned_cols=148  Identities=28%  Similarity=0.342  Sum_probs=122.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC---ccccccchHHHhcCCc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG---MERVASITSSYYKFAE   84 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~   84 (189)
                      -+||+++|++|||||||+++|....+..... .++.+.+.....+..++..+.+.+||+++   ++++  ++..+++.++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCcccc-ccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            4899999999999999999999876543332 44566678888888899999999999764   4444  4567789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++|||++++++|+.+..|+..+....  +++|+++|+||+|+...               ..+|++|||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999999887654  68999999999996432               238999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy17231        148 FADIGRQLILS  158 (189)
Q Consensus       148 ~~~i~~~i~~~  158 (189)
                      |+++++.+..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998655

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.7e-31  Score=183.64  Aligned_cols=144  Identities=29%  Similarity=0.509  Sum_probs=123.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-chHHHhcCCcE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-ITSSYYKFAEA   85 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~   85 (189)
                      +.+||+++|++|||||||+++|..+.+....  .++.+................+.+||++|...+.. .+..+++.+|+
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   78 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   78 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--CcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCc
Confidence            3589999999999999999999999987766  55666677777788888889999999999877654 56788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC---CCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT---GEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~---~~~i~  145 (189)
                      +++|||++++++|+++..|+..+.+..  +++|+++||||+|+...               ..+|++|||++   +.||+
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~  158 (165)
T d1z06a1          79 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  158 (165)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             eEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHH
Confidence            999999999999999999999988765  68999999999996432               23899999997   55999


Q ss_pred             HHHHHHH
Q psy17231        146 EMFADIG  152 (189)
Q Consensus       146 ~~~~~i~  152 (189)
                      ++|++++
T Consensus       159 e~F~~lA  165 (165)
T d1z06a1         159 AIFMTLA  165 (165)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999863

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.8e-31  Score=186.12  Aligned_cols=141  Identities=18%  Similarity=0.318  Sum_probs=120.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|++|||||||+++|..+.+...+  .+|++.+..  .+..++  +.+.+||+||++.+...+..++..+++++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~--~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   75 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcc--cccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhh
Confidence            689999999999999999999999887655  667765543  334443  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHH
Q psy17231         88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +|||++++++|+....|+..+....  +++|+++|+||.|+.+.                  ..+++++||++|.|++++
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999999999988887654  78999999999886432                  127799999999999999


Q ss_pred             HHHHHHH
Q psy17231        148 FADIGRQ  154 (189)
Q Consensus       148 ~~~i~~~  154 (189)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=183.18  Aligned_cols=144  Identities=15%  Similarity=0.271  Sum_probs=118.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.+..+..   ..+|.+....  .+...  .+.+.+||+||++.+...+..+++.++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~---~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   73 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDT---ISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGL   73 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSS---CCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCc---ccceEeeeee--ecccc--ccceeeeecCcchhhhhHHHhhhhhhhcc
Confidence            46899999999999999999998876632   3566654433  33444  47889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHH
Q psy17231         87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~  146 (189)
                      ++|||+++..++.....++.......  .+.|+++|+||+|+.+.                  ..++++|||++|.|+++
T Consensus        74 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          74 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999999988877776665433  78999999999986432                  12689999999999999


Q ss_pred             HHHHHHHHHHH
Q psy17231        147 MFADIGRQLIL  157 (189)
Q Consensus       147 ~~~~i~~~i~~  157 (189)
                      +|+||++++.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.3e-30  Score=183.17  Aligned_cols=145  Identities=21%  Similarity=0.364  Sum_probs=119.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC
Q psy17231          3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF   82 (189)
Q Consensus         3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   82 (189)
                      +...+.+||+++|++|||||||+++|.++.+...   .++.+.+.  ..+...  .+.+.+||++|++.+...+..+++.
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~---~~~~~~~~--~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~   83 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI---TPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFEN   83 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE---EEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc---eeeeeeeE--EEeccC--CeeEeEeeccccccchhHHHHHhhc
Confidence            4456789999999999999999999998877432   33343332  334444  3688999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCC
Q psy17231         83 AEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGE  142 (189)
Q Consensus        83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~  142 (189)
                      ++++++|||++++.++.++..|+..+....  .++|+++|+||+|+...                  ..++++|||++|.
T Consensus        84 ~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999999988888776654  67999999999886432                  1268999999999


Q ss_pred             CHHHHHHHHHHH
Q psy17231        143 GVEEMFADIGRQ  154 (189)
Q Consensus       143 ~i~~~~~~i~~~  154 (189)
                      |++++|+|+++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=6.4e-31  Score=187.22  Aligned_cols=148  Identities=19%  Similarity=0.320  Sum_probs=117.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+.+||+++|++|||||||+++|....+...   .+|.+....  .....  .+.+.+||++|++.+...+..++..+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~---~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT---KPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADT   85 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE---CSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc---ccccceEEE--EEeeC--CEEEEEEecccccccchhHHhhhccc
Confidence            356789999999999999999999987776432   345443332  23333  46889999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCC
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~  143 (189)
                      +++++|+|++++.++.+...|+.......  .+.|+++|+||+|+...                  ..++++|||++|+|
T Consensus        86 ~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          86 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             eeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999999988887765543  67999999999987432                  12689999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy17231        144 VEEMFADIGRQLILS  158 (189)
Q Consensus       144 i~~~~~~i~~~i~~~  158 (189)
                      |+++|+++++.+.+.
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=3.7e-30  Score=181.84  Aligned_cols=143  Identities=16%  Similarity=0.347  Sum_probs=117.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||+++|..+.+...   .+|.+....  ....  ..+.+.+||+||+..+...+..+++.+++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~---~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   82 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQG   82 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE---EEETTEEEE--EEEE--TTEEEEEEEESCCGGGHHHHGGGTTTCCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc---cceeeeeEE--Eeec--cceeeEEecCCCcchhhhHHHhhhcccce
Confidence            5679999999999999999999997775332   344443332  2222  34688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|+|+++.+++..+..|+.......  .+.|+++|+||+|+....                  ..+++|||++|+||+
T Consensus        83 ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          83 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999999988888776643  689999999999875321                  158999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        146 EMFADIGRQL  155 (189)
Q Consensus       146 ~~~~~i~~~i  155 (189)
                      |+|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=170.18  Aligned_cols=140  Identities=16%  Similarity=0.349  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL   88 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   88 (189)
                      +||+++|++|||||||+++|.++++........     .  .........+.+.+||++|...+...+..++..++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-----F--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-----C--CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccccee-----e--EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEE
Confidence            589999999999999999999888755432111     1  112233445789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHH
Q psy17231         89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~  148 (189)
                      |||++++.++..+..|+..+....  ...|+++++||.|....                  ..++++|||++|.||+++|
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999999988888877654  67999999999765432                  2278999999999999999


Q ss_pred             HHHHHHH
Q psy17231        149 ADIGRQL  155 (189)
Q Consensus       149 ~~i~~~i  155 (189)
                      ++|++++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=4.5e-26  Score=160.79  Aligned_cols=143  Identities=21%  Similarity=0.396  Sum_probs=111.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|.+|||||||++++.+.++...   .++.+..  .......  ..++.+||+++.+.+...+...+..+++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~---~~~~~~~--~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~   85 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT---SPTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEF   85 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE---ECCSCSS--CEEEEET--TEEEEEEECCC----CGGGHHHHTTCCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc---cccccee--EEEEeec--ceEEEEeccccccccccchhhhhcccee
Confidence            5679999999999999999999998877432   2222222  2223333  3688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~  145 (189)
                      +++|+|.++..++.....+........  ...|+++|+||+|+....                  .++++|||++|+|++
T Consensus        86 ~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          86 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999999988877666555443  689999999998864321                  269999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        146 EMFADIGRQL  155 (189)
Q Consensus       146 ~~~~~i~~~i  155 (189)
                      +++++|++++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.8e-26  Score=163.32  Aligned_cols=141  Identities=16%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|+.|||||||+++|....++.       .+.  ....+...  ...+.+||++|++.+...+..+++.++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-------~~~--~~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~   69 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-------TGI--VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAI   69 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC-------CSE--EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-------ccE--EEEEEEee--eeeeeeeccccccccccchhhcccCCcee
Confidence            46899999999999999999998776542       222  12223333  46889999999999999999999999999


Q ss_pred             EEEEeCCChhhH-----------HHHHHHHHHHHHhC-CCCcEEEEeeccccccc-------------------------
Q psy17231         87 ILVFSLDNAASF-----------HVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-------------------------  129 (189)
Q Consensus        87 i~v~d~~~~~s~-----------~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-------------------------  129 (189)
                      ++|||+++.+++           +....|...+.... ...|+++++||+|....                         
T Consensus        70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (195)
T d1svsa1          70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA  149 (195)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHH
T ss_pred             eeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHH
Confidence            999999988765           33344444443333 67999999999663110                         


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  158 (189)
                                      ...+++|||++|.||+++|+.+.+.+++.
T Consensus       150 ~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         150 YIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                            01457899999999999999999888764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-25  Score=161.15  Aligned_cols=145  Identities=17%  Similarity=0.147  Sum_probs=117.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|+.|||||||+++|..+.+.    +.||+|.++...  .  ...+.+.+||++|++.+...+..+++.++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~----~~pTiG~~~~~~--~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   72 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS----GVPTTGIIEYPF--D--LQSVIFRMVDVGGQRSERRKWIHCFENVTSI   72 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS----CCCCCSCEEEEE--E--CSSCEEEEEECCCSTTGGGGGGGGCSSCSEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC----CCceeeEEEEEE--e--ccceeeeecccccccccccccccccccccee
Confidence            4689999999999999999999888762    368888775432  2  3346889999999999999999999999999


Q ss_pred             EEEEeCCChh-----------hHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc-------------------------
Q psy17231         87 ILVFSLDNAA-----------SFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-------------------------  129 (189)
Q Consensus        87 i~v~d~~~~~-----------s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-------------------------  129 (189)
                      ++|||+++..           .++....|...+.... .+.|+++++||+|+...                         
T Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
T d2bcjq2          73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR  152 (200)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHH
T ss_pred             eEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHH
Confidence            9999987753           4566677777665554 78999999999764211                         


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                                      ...+++|||++|.||+++|+.+.+.|++.+
T Consensus       153 ~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         153 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence                            002579999999999999999999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=8.7e-25  Score=152.45  Aligned_cols=146  Identities=19%  Similarity=0.358  Sum_probs=115.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA   85 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   85 (189)
                      .+.+||+++|++|||||||++++.++.+...   .++.+  .........  ...+.+||.++...+.......+...++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~---~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDA   75 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce---ecccc--eeeeeeccC--ceEEEEeeccccccccccchhhhhhhhh
Confidence            3569999999999999999999999887543   33332  222233333  3678999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231         86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE  145 (189)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~  145 (189)
                      +++++|+.+..++.....+........  ...|+++++||.|+...                  ..+|++|||++|.||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~  155 (169)
T d1upta_          76 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  155 (169)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             hhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence            999999999888888876665554433  68999999999886432                  1278999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy17231        146 EMFADIGRQLILS  158 (189)
Q Consensus       146 ~~~~~i~~~i~~~  158 (189)
                      ++|++|++.+.++
T Consensus       156 e~~~~l~~~l~~k  168 (169)
T d1upta_         156 EAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.9e-25  Score=154.43  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSSYY   80 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~   80 (189)
                      +||+++|++|||||||+|+|.+.+...... .++.........+...+  ..+.+||+||..+...        .....+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHH
Confidence            799999999999999999999776543222 22222233333444454  4778999999765432        224557


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIG  152 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~  152 (189)
                      ..++++++++|..+..+++....|...+.......|+++|+||+|+...        ..+++++||++|.||++++++|.
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~iSAk~~~gi~~L~~~l~  158 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLK  158 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHHHHhCCCcEEEEECCCCCCHHHHHHHHH
Confidence            8899999999999988877777776666665568999999999997543        23889999999999999999998


Q ss_pred             HHH
Q psy17231        153 RQL  155 (189)
Q Consensus       153 ~~i  155 (189)
                      +.+
T Consensus       159 ~~l  161 (161)
T d2gj8a1         159 QSM  161 (161)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-24  Score=150.45  Aligned_cols=137  Identities=17%  Similarity=0.273  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV   89 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   89 (189)
                      ||+++|++|||||||+++|.++.+...   .+|.+....  .....  .....+||++|...+...+...+..+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~---~~t~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPTSE--ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC---CCCCSCEEE--EECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee---eceeeEeEE--EeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeee
Confidence            799999999999999999999887432   455443332  22232  35678999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------CCceEEeeccCCC
Q psy17231         90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------ISSTYKTSCKTGE  142 (189)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------~~~~~~~Sa~~~~  142 (189)
                      +|.++..++.....|........  .+.|+++++||.|+...                         ...+++|||++|+
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999999988888777766654  68999999999885432                         1158999999999


Q ss_pred             CHHHHHHHHHH
Q psy17231        143 GVEEMFADIGR  153 (189)
Q Consensus       143 ~i~~~~~~i~~  153 (189)
                      ||+|+|+||++
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=7.4e-24  Score=149.87  Aligned_cols=145  Identities=17%  Similarity=0.238  Sum_probs=108.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA   83 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   83 (189)
                      ...+..||+++|++|||||||+++|.+..+...   .++.+...  ..+...+  ..+.+||+.+...+...+.......
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~---~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   81 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI   81 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcce---ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhccc
Confidence            346789999999999999999999998876533   33333232  3344444  4678999999999998999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------------------C
Q psy17231         84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------------------S  131 (189)
Q Consensus        84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------------------~  131 (189)
                      +++++++|+++...+.....+........  .+.|+++++||+|+....                              .
T Consensus        82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (186)
T d1f6ba_          82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  161 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence            99999999999998888876665555433  789999999998865431                              1


Q ss_pred             ceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        132 STYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       132 ~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      .+++|||++|+||+|+|+|+++++
T Consensus       162 ~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         162 EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHhh
Confidence            589999999999999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.2e-24  Score=154.00  Aligned_cols=144  Identities=18%  Similarity=0.140  Sum_probs=101.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSSY   79 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   79 (189)
                      .-.|+++|.+|||||||+|+|.+...........+. ...........+  ..+.+|||||.......        ....
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTT-RKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCC-CSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcc-cccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            347999999999999999999987653333222222 133333344444  47899999998654332        2344


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEE  146 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~  146 (189)
                      +..+|++++|+|++++.... -..|...+.....+.|+++|+||+|+...             ...++++||++|.|+++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~-~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             cccccceeeeechhhhhccc-ccchhhheeccccchhhhhhhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            67899999999998764432 23444444444468999999999996432             23778999999999999


Q ss_pred             HHHHHHHHH
Q psy17231        147 MFADIGRQL  155 (189)
Q Consensus       147 ~~~~i~~~i  155 (189)
                      +++++++.+
T Consensus       161 L~~~i~~~l  169 (178)
T d1wf3a1         161 LKADLLALM  169 (178)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhC
Confidence            999998755

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.8e-23  Score=146.94  Aligned_cols=144  Identities=17%  Similarity=0.253  Sum_probs=103.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA   86 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   86 (189)
                      +.+||+++|++|||||||+++|.   +...+  .||+|....  .+...  ...+.+||++|++.+...+..+++.++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~--~pTiG~~~~--~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~   71 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQ--DPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSI   71 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSC--CCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCC--CCeeeeEEE--EEeee--eeeeeeecccceeeeccccccccccccee
Confidence            35899999999999999999994   22233  678876543  34444  46789999999999999999999999999


Q ss_pred             EEEEeCCChhh----------HHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------
Q psy17231         87 ILVFSLDNAAS----------FHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------  129 (189)
Q Consensus        87 i~v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------  129 (189)
                      ++++|.++..+          ++....++..+....  .+.|+++++||+|+...                         
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~  151 (200)
T d1zcba2          72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ  151 (200)
T ss_dssp             EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHH
T ss_pred             EEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHH
Confidence            99999987533          344555555555433  68999999999775311                         


Q ss_pred             -----------------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        130 -----------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       130 -----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                                       ..-+++|||+++.||+++|+.+.+.|.+.+
T Consensus       152 ~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         152 KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence                             002457999999999999999988887653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=4.6e-23  Score=145.91  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=103.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcc---cceeee--eEEEEEECCeEEEEEEEeCCCccccccchHH
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKS---TLGLDN--FNKEYKVDDRSIQMQLWDTGGMERVASITSS   78 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~---t~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   78 (189)
                      |+++.++|.++|.+|+|||||+|+|.+..........+   ..+...  ....+...  ...+.++|+||+.+|......
T Consensus         1 ~~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~   78 (179)
T d1wb1a4           1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVS   78 (179)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccC--Cccccccccccccccccchhh
Confidence            57889999999999999999999998543221111111   111111  11122233  357899999999988888888


Q ss_pred             HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEee
Q psy17231         79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTS  137 (189)
Q Consensus        79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~S  137 (189)
                      .+..+|++++|+|+++....+.. ..+..+..  .++|+++|+||.|+...                     ..+++++|
T Consensus        79 ~l~~~d~~ilv~d~~~g~~~~~~-~~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iS  155 (179)
T d1wb1a4          79 AADIIDLALIVVDAKEGPKTQTG-EHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS  155 (179)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred             hhhhccccccccccccccchhhh-hhhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            89999999999999875332221 22222233  37999999999885321                     13789999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHh
Q psy17231        138 CKTGEGVEEMFADIGRQLILS  158 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i~~~  158 (189)
                      |++|.|++++++.|.+.+.+.
T Consensus       156 A~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         156 AKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHS
T ss_pred             ccCCcCHHHHHHHHHhcCCcc
Confidence            999999999999999888654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.1e-22  Score=142.41  Aligned_cols=145  Identities=14%  Similarity=0.015  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-------cchHHHhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-------SITSSYYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~   82 (189)
                      .|.|+|.+|||||||+|+|.+...........+.  ..... .........+.+|||||.....       ......+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~--~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL--SPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR   79 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS--CCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCce--eeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHh
Confidence            4899999999999999999877654443333332  22222 2222233468999999954321       122345678


Q ss_pred             CcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCCCCHHHH
Q psy17231         83 AEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        83 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~~~i~~~  147 (189)
                      ++++++++|....  +.......|+........++|+|+|+||+|+..             ...+++.+||++|.|++++
T Consensus        80 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2          80 TRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             hhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence            8999999998653  334444444443322224689999999998632             1348999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17231        148 FADIGRQLIL  157 (189)
Q Consensus       148 ~~~i~~~i~~  157 (189)
                      ++.+.+.+..
T Consensus       160 ~~~i~~~l~~  169 (180)
T d1udxa2         160 KEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9998888754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1e-21  Score=137.75  Aligned_cols=145  Identities=15%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSYY   80 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~   80 (189)
                      +|+++|++|||||||+++|.+...........+. .......+...  ...+.+||++|......         .....+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT-RDPVQDTVEWY--GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEET--TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCcee-ecccccccccc--ccccccccccceeeeecccccccccccccccc
Confidence            6899999999999999999876543222112211 12222233333  35789999999543221         223446


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCCCCHHHH
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~~~i~~~  147 (189)
                      ..+|+++++.+.+..... ....++..+...  ++|+|+|+||+|+..             ...+++++||++|.|++++
T Consensus        79 ~~ad~i~~~~~~~~~~~~-~~~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L  155 (171)
T d1mkya1          79 READLVLFVVDGKRGITK-EDESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTM  155 (171)
T ss_dssp             TTCSEEEEEEETTTCCCH-HHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             ccCcEEEEeecccccccc-cccccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHH
Confidence            789999999998765433 223444444544  799999999988521             1347799999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy17231        148 FADIGRQLILSNR  160 (189)
Q Consensus       148 ~~~i~~~i~~~~~  160 (189)
                      +++|.+.+.++..
T Consensus       156 ~~~i~~~l~e~~~  168 (171)
T d1mkya1         156 LETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCCC
Confidence            9999998866543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=4.9e-22  Score=137.73  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------cchHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA---------SITSSY   79 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~   79 (189)
                      +||+++|.+|||||||+|+|.+.+.........+ ........+...+  ..+.+||+||.....         ......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGT-TRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCC-SSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccc-cccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            6899999999999999999987664333222222 1133333444554  578899999953211         112234


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHHH
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEEM  147 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~~  147 (189)
                      +..+|++++|+|++++........     .......++++++||.|....            ..+++++||++|.||+++
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~~-----~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L  152 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRKI-----LERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKL  152 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-----HHHHTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHH
T ss_pred             HHhCCEEEEEEeCCCCcchhhhhh-----hhhcccccceeeeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHH
Confidence            578999999999998765433322     222246899999999775432            238999999999999999


Q ss_pred             HHHHHH
Q psy17231        148 FADIGR  153 (189)
Q Consensus       148 ~~~i~~  153 (189)
                      +++|.+
T Consensus       153 ~~~I~k  158 (160)
T d1xzpa2         153 EESIYR  158 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.8e-21  Score=138.71  Aligned_cols=115  Identities=15%  Similarity=0.244  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cchHHHhcCCcEEEE
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-SITSSYYKFAEAAIL   88 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~   88 (189)
                      +|+++|++|||||||+++|..+.+...   .+|.+.+.....+. ....+.+.+||++|++.+. ..+..++..++++++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~   77 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF   77 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccce
Confidence            699999999999999999999887543   34444344333222 3445789999999998875 467788899999999


Q ss_pred             EEeCCChhhH-HHHHHHHHHHHHh----CCCCcEEEEeecccccc
Q psy17231         89 VFSLDNAASF-HVLSQHLLEIVTY----AENAKIFLCGNNEQCHN  128 (189)
Q Consensus        89 v~d~~~~~s~-~~~~~~~~~~~~~----~~~~p~ivv~nK~d~~~  128 (189)
                      |+|+++..++ .....|+..+...    ..++|++||+||+|+..
T Consensus        78 v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            9999997653 4555555554432    25689999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.6e-21  Score=136.13  Aligned_cols=138  Identities=17%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------------c
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA---------------S   74 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------~   74 (189)
                      .|+++|.+|||||||+|+|.+.+......+..|.    ....+...    .+.+||+||.....               .
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~----~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR----KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT----SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEee----cccccccc----cceecccCCceeccccccccccccchhhhh
Confidence            5899999999999999999987764333222232    22333333    25789999953211               1


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHH----------HHHHHHHHHhCCCCcEEEEeeccccccc---------------
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVL----------SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------  129 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------  129 (189)
                      ......+.+|++++|+|..........          ...+..+..  .++|+|+|+||+|+...               
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~  151 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP  151 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhccc
Confidence            223445678999999998765322111          112222333  37999999999985321               


Q ss_pred             ----CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231        130 ----ISSTYKTSCKTGEGVEEMFADIGRQLIL  157 (189)
Q Consensus       130 ----~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  157 (189)
                          ...++++||++|.|++++++++.+.+.+
T Consensus       152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         152 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                0147889999999999999999988865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=2.7e-20  Score=131.92  Aligned_cols=144  Identities=18%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------------   74 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------   74 (189)
                      ..+||+++|.+|||||||+|+|.+...........+. .......+..++  ..+.++|+||......            
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccc-cccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            4699999999999999999999976642222212221 123333445555  3578999999753222            


Q ss_pred             chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceE
Q psy17231         75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTY  134 (189)
Q Consensus        75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~  134 (189)
                      .....+..+|++++|+|++.... ++...+...+...  +.|+|+|+||+|+...                    ..+++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc--CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            23445678899999999976533 2333444444444  7999999999884211                    23789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHH
Q psy17231        135 KTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       135 ~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                      .+||++|.|+++++++|.+.+.
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999876654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=4.7e-21  Score=140.30  Aligned_cols=152  Identities=17%  Similarity=0.163  Sum_probs=99.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEE--------------EEEECCeEEEEEEEeCCCcccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNK--------------EYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~--------------~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      ++..|+|+|.+++|||||+++|.............+........              ...+......+.++||||+.+|
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            33449999999999999999997543211110001100000000              0111222357899999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------------
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------------  130 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------------  130 (189)
                      .......+..+|++++|+|+.+.-.- +....+..+...  ++|+|+|.||+|+....                      
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEGFKP-QTQEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             cccchhcccccceEEEEEecccCccc-chhHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            88777788899999999999764221 222333334443  79999999998853211                      


Q ss_pred             -------------------------------CceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231        131 -------------------------------SSTYKTSCKTGEGVEEMFADIGRQLILSNRS  161 (189)
Q Consensus       131 -------------------------------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  161 (189)
                                                     .+++.+||++|.|++++++.+.....+...+
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                           1578999999999999999988766554433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.6e-20  Score=135.77  Aligned_cols=142  Identities=15%  Similarity=0.188  Sum_probs=106.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI   87 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   87 (189)
                      .+||+++|+.|||||||++++..+.+      .||+|+...  .+..++  +.+.+||++|++.+...|..++..+++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~------~pTiG~~~~--~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV------VLTSGIFET--KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC------CCCCSCEEE--EEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc------CCCCCeEEE--EEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            58999999999999999999987654      467775543  344444  68899999999999999999999999999


Q ss_pred             EEEeCCChh----------hHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------------
Q psy17231         88 LVFSLDNAA----------SFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------------  130 (189)
Q Consensus        88 ~v~d~~~~~----------s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------------  130 (189)
                      +|+|+++..          ...+...++..+....  .++|++|++||+|+....                         
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999987542          2333333344444432  689999999997742110                         


Q ss_pred             -------------------------------C--ceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        131 -------------------------------S--STYKTSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       131 -------------------------------~--~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                                                     .  -.+++||.++.||+.+|+.+.+.|++..
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                                           0  1257888888888888888877777654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.8e-21  Score=138.08  Aligned_cols=145  Identities=18%  Similarity=0.125  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----ch---HHHhcC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----IT---SSYYKF   82 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~---~~~~~~   82 (189)
                      .|.|+|++|||||||+|+|.+...........|.  ..........+ ...+.+|||||..+...    ..   ...+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~--~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTL--VPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCC--CCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceE--eeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            6899999999999999999876654333333333  22222333322 23678999999643221    11   223456


Q ss_pred             CcEEEEEEeCCChhhH---HHHHHHHHHHHHhC---CCCcEEEEeeccccccc-------------CCceEEeeccCCCC
Q psy17231         83 AEAAILVFSLDNAASF---HVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        83 ~~~~i~v~d~~~~~s~---~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~  143 (189)
                      ++.++++++.......   +....+........   .++|+++|+||+|+...             ..+++.+||++|.|
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~G  159 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREG  159 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSST
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCC
Confidence            7888888876544322   11112211112111   46899999999885422             23889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQLIL  157 (189)
Q Consensus       144 i~~~~~~i~~~i~~  157 (189)
                      ++++++++.+.+.+
T Consensus       160 i~~L~~~i~~~L~~  173 (185)
T d1lnza2         160 LRELLFEVANQLEN  173 (185)
T ss_dssp             THHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999887743

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.79  E-value=8e-19  Score=125.40  Aligned_cols=150  Identities=15%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---CCcccceeeeeEEEEE-------------------ECCeEEEEE
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---SRKSTLGLDNFNKEYK-------------------VDDRSIQMQ   62 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~-------------------~~~~~~~~~   62 (189)
                      +.+.++|+++|..++|||||+++|.+.......   ....|....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999753211110   0011111111111010                   112245689


Q ss_pred             EEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------
Q psy17231         63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------  129 (189)
Q Consensus        63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------  129 (189)
                      ++|+||+.+|.......+..+|++++|.|+.+..........+..+... ...++|++.||.|+...             
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999887777788999999999988753222333333333333 23568889999775321             


Q ss_pred             -------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 -------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 -------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                             ..+++.+||++|.|++++++.+.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence                   12789999999999999999886643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=1.9e-18  Score=123.28  Aligned_cols=139  Identities=17%  Similarity=0.181  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------------c
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------------I   75 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------------~   75 (189)
                      .+|+|+|.+|||||||+|+|.+.+........++.  ...........   .+.+.|+++......             .
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~--t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK--TQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccce--eeecccccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            48999999999999999999976542222112221  11122222222   334566666422111             1


Q ss_pred             hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231         76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS  137 (189)
Q Consensus        76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S  137 (189)
                      ....+..++++++|+|++.+.. .....++..+...  ++|+++|+||+|+...                  ..+++.+|
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             hhccccchhhhhhhhhcccccc-ccccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            1223345689999999876532 1223444444444  7999999999885321                  12689999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q psy17231        138 CKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       138 a~~~~~i~~~~~~i~~~i  155 (189)
                      |++|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988776

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=7.6e-19  Score=126.49  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---CCcccceeeeeEEEEEE------------------------CC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---SRKSTLGLDNFNKEYKV------------------------DD   56 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~------------------------~~   56 (189)
                      ...|+++|+++|..++|||||+++|.+.......   ....+............                        ..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            3467799999999999999999999752211000   00000000000000000                        01


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------  129 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------  129 (189)
                      ....+.++|+||+.+|.......+..+|++++|+|+.+.-.-.+.+..+..+... .-.|+||+.||+|+...       
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCccchHHHHHH
Confidence            1246899999999999877777788899999999997642111222222222222 23589999999886321       


Q ss_pred             -------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231        130 -------------ISSTYKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       130 -------------~~~~~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                                   ..+++.+||++|.||+++++.+...+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence                         13789999999999999999877654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.74  E-value=1.3e-18  Score=124.20  Aligned_cols=147  Identities=13%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC-----CC-------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD-----TF-------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~-----~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      +|+++|+++|..++|||||+++|...     ..       ......+...|.+.......+......+.++|+||+.+|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            46799999999999999999999641     00       0001112222334444444444445678999999999998


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------C
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------I  130 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~  130 (189)
                      ......+..+|++++|+|+++... .+....+..+... ...|+||+.||.|+...                       .
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI-GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT-TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh-cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            877777889999999999987532 2333334344443 24689999999885311                       1


Q ss_pred             CceEEeeccCC----------CCHHHHHHHHHHH
Q psy17231        131 SSTYKTSCKTG----------EGVEEMFADIGRQ  154 (189)
Q Consensus       131 ~~~~~~Sa~~~----------~~i~~~~~~i~~~  154 (189)
                      .+++.+||++|          .+++++++.+.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            26789999988          5888887776543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.6e-18  Score=123.46  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH----hcC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY----YKF   82 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~   82 (189)
                      ...+|+|+|++|||||||+|+|.+..+...      +..+.....  .......+.+||+||+..+...+...    ...
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~------tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   73 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT------VVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   73 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB------CCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe------EEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhh
Confidence            456899999999999999999998876432      211222222  23333467899999998776544433    445


Q ss_pred             CcEEEEEEeCC-ChhhHHHHHHHHHHHHH----hC-CCCcEEEEeeccccccc
Q psy17231         83 AEAAILVFSLD-NAASFHVLSQHLLEIVT----YA-ENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        83 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~----~~-~~~p~ivv~nK~d~~~~  129 (189)
                      ++.+++++|+. +..+++....|+..+..    .. .++|+++|+||+|+...
T Consensus        74 ~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          74 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            57888888866 46667777666654432    22 68999999999998653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.9e-17  Score=114.55  Aligned_cols=140  Identities=19%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSY   79 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~   79 (189)
                      -.|+++|.+|||||||+|+|.+.+.........+.. .........+.  ..+..||++|......         .....
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceE-EEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccc
Confidence            358899999999999999999876543332233321 22223333333  3556788887543211         11222


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCC
Q psy17231         80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~  143 (189)
                      ...+++++++.|..+..  .....+...+..  ...|.++|.||.|....                ..+++++||++|.|
T Consensus        83 ~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCCEEEEEEEEETTCCC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hhhcceeEEEEecCccc--hhHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            33456777777766532  222223333333  36889999999663211                23789999999999


Q ss_pred             HHHHHHHHHHHH
Q psy17231        144 VEEMFADIGRQL  155 (189)
Q Consensus       144 i~~~~~~i~~~i  155 (189)
                      ++++++.+.+.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999987765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=2.4e-16  Score=117.36  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             Cce-EEEEEcCCCCCHHHHHHHHHhC--CCCC------------CC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231          7 PEQ-KVILCGEYGVGKSSLFRRYAYD--TFIS------------SS--SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM   69 (189)
Q Consensus         7 ~~~-~i~i~G~~g~GKTtli~~l~~~--~~~~------------~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   69 (189)
                      .++ +|.++|..|+|||||+.+|...  ....            ..  .....+.+......+.++  ..+++++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCch
Confidence            344 6999999999999999999521  1100            00  001111112222344444  468899999999


Q ss_pred             cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231         70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN  123 (189)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (189)
                      .+|.......++.+|++|+|+|+.+.-.-....-| +....+  ++|.|++.||
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~--~lP~i~fINK  132 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY--KVPRIAFANK  132 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT--TCCEEEEEEC
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc--CCCEEEEEec
Confidence            99999999999999999999999876443333444 344444  7999999999

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.8e-16  Score=113.65  Aligned_cols=119  Identities=16%  Similarity=0.112  Sum_probs=79.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC--------CCCC-----CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD--------TFIS-----SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV   72 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~--------~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   72 (189)
                      +|+++|+++|..++|||||+++|...        ....     ..+.+...|+.+......+......++++||||+.+|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            46799999999999999999999521        0000     0000000123333333333333457899999999999


Q ss_pred             ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccc
Q psy17231         73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCH  127 (189)
Q Consensus        73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~  127 (189)
                      .......+..+|++++|+|+++.-.. +....+..+...  ++| ++|+.||.|+.
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~~--gi~~iiv~iNK~D~~  133 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMV  133 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEecccC
Confidence            98888889999999999999875433 223333333443  665 77889999973

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.4e-16  Score=108.27  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSS   78 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~   78 (189)
                      ...++|+++|.+|||||||+|+|.+.+........++..  ..............+..++.++......       ....
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT--QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccce--eeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            446899999999999999999998776543332222221  1111111111122222222222211111       1111


Q ss_pred             H---hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEe
Q psy17231         79 Y---YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKT  136 (189)
Q Consensus        79 ~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~  136 (189)
                      .   ......++.+.+...... .....++..+...  ..++++++||.|+...                   ..+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  168 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  168 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             hhhhhhheeEEEEeecccccch-hHHHHHHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence            1   122334445555544332 2233444444444  6899999999774221                   1268999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q psy17231        137 SCKTGEGVEEMFADIGRQ  154 (189)
Q Consensus       137 Sa~~~~~i~~~~~~i~~~  154 (189)
                      ||++|.||+++++.|.+-
T Consensus       169 SA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         169 SSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999999987654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.64  E-value=1.4e-15  Score=110.20  Aligned_cols=137  Identities=16%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC--CCCC-------------C--------------CCcccceeeeeEEEEEECC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT--FISS-------------S--------------SRKSTLGLDNFNKEYKVDD   56 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~--~~~~-------------~--------------~~~~t~~~~~~~~~~~~~~   56 (189)
                      ...+||+++|..++|||||+.+|+...  ....             .              ..+...+.........+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            456899999999999999999995321  1000             0              0000011122222222223


Q ss_pred             eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCC-cEEEEeecccccccC-----
Q psy17231         57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA-KIFLCGNNEQCHNLI-----  130 (189)
Q Consensus        57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~ivv~nK~d~~~~~-----  130 (189)
                      ....+.++|+||+.+|..........+|++++|+|+.+.-.- +....+ .+.... ++ .+|++.||.|+.+..     
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~-Qt~e~~-~~~~~~-gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHS-YIASLL-GIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHH-HHHHHT-TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc-chHHHH-HHHHHc-CCCEEEEEEEccccccccceehh
Confidence            345789999999999988888888999999999999764221 222222 223332 54 478899998864321     


Q ss_pred             -------------------CceEEeeccCCCCHH
Q psy17231        131 -------------------SSTYKTSCKTGEGVE  145 (189)
Q Consensus       131 -------------------~~~~~~Sa~~~~~i~  145 (189)
                                         .+++.+||++|.|+.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                               156788888888873

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.63  E-value=9.3e-16  Score=113.81  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-CCC-------CCCC--------cccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT-FIS-------SSSR--------KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~-~~~-------~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      +|+++|..++|||||+.+|.... ...       ....        ...+........+.+++  .+++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            68999999999999999995221 110       0000        00011122233445554  578999999999999


Q ss_pred             cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ......++.+|++++|+|+.+.-.-....-| +.+.+.  ++|.+++.||.|
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~--~~p~~i~iNk~D  130 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL--GLPRMVVVTKLD  130 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCEEEEEECGG
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc--cccccccccccc
Confidence            9889999999999999999875443333333 344444  799999999955

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=2.8e-15  Score=110.27  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC--CC-------------------------CCCCCcccceeeeeEEEEEECCeE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT--FI-------------------------SSSSRKSTLGLDNFNKEYKVDDRS   58 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~--~~-------------------------~~~~~~~t~~~~~~~~~~~~~~~~   58 (189)
                      .++++|+++|..++|||||+.+|....  ..                         .........+..............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            457799999999999999999994211  00                         000000011111111111222233


Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhCCCC-cEEEEeecccccccC-
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENA-KIFLCGNNEQCHNLI-  130 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~-p~ivv~nK~d~~~~~-  130 (189)
                      ..+.+.|+||+.+|..........+|++++|+|+....   ++.   +....+..+...  ++ +++++.||.|+.... 
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccch
Confidence            57899999999999988888889999999999997632   110   222222222222  44 588999998864321 


Q ss_pred             ---------------------------CceEEeeccCCCCHHHHH
Q psy17231        131 ---------------------------SSTYKTSCKTGEGVEEMF  148 (189)
Q Consensus       131 ---------------------------~~~~~~Sa~~~~~i~~~~  148 (189)
                                                 .+++.+||++|.||.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence                                       157888888888886643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.57  E-value=6.8e-16  Score=112.26  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCC--CC-------------------------CCCCCcccceeeeeEEEEEECCeE
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDT--FI-------------------------SSSSRKSTLGLDNFNKEYKVDDRS   58 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~--~~-------------------------~~~~~~~t~~~~~~~~~~~~~~~~   58 (189)
                      +|+++|+++|..++|||||+.+|+...  ..                         .....+...+..............
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            367999999999999999999985210  00                         000000011222222222333334


Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAKIFLCGNNEQCH  127 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~  127 (189)
                      ..++++|+||+.+|.......++.+|++++|+|+.+..   ++   .+....+ .+.......++|++.||.|+.
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~~~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTMGLDQLIVAVNKMDLT  154 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHTTCTTCEEEEECGGGS
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHHHhCCCceEEEEEcccCC
Confidence            68899999999999998889999999999999998742   11   1122212 122222346789999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.4e-14  Score=108.67  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             Cce-EEEEEcCCCCCHHHHHHHHHh--CCC----------CC----CCCCcccceeeeeEEEEEE--------------C
Q psy17231          7 PEQ-KVILCGEYGVGKSSLFRRYAY--DTF----------IS----SSSRKSTLGLDNFNKEYKV--------------D   55 (189)
Q Consensus         7 ~~~-~i~i~G~~g~GKTtli~~l~~--~~~----------~~----~~~~~~t~~~~~~~~~~~~--------------~   55 (189)
                      ..+ +|+|+|..++|||||+.+|..  +..          .+    +..+.-|+  ......+.+              +
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi--~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITI--KSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCB--CCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceE--eCCEEEEEeccCcccccchhcccc
Confidence            445 599999999999999999952  111          10    11111111  111112211              3


Q ss_pred             CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCCceEE
Q psy17231         56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYK  135 (189)
Q Consensus        56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~~~~~  135 (189)
                      ++.+.++++||||+.+|.......++.+|++++|+|+...-..+...-|. .....  ++|++++.||.|....      
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~-~a~~~--~~p~i~viNKiDr~~~------  163 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALGE--RIKPVVVINKVDRALL------  163 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCEEEEEEECHHHHHH------
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHH-HHHHc--CCCeEEEEECcccccc------
Confidence            35678999999999999999999999999999999998764443333333 33443  7999999999998774      


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHhh
Q psy17231        136 TSCKTGEGVEEMFADIGRQLILSN  159 (189)
Q Consensus       136 ~Sa~~~~~i~~~~~~i~~~i~~~~  159 (189)
                         --.....++++.+.+.+...+
T Consensus       164 ---el~~~~~~~~~~l~~~i~~vn  184 (341)
T d1n0ua2         164 ---ELQVSKEDLYQTFARTVESVN  184 (341)
T ss_dssp             ---TSCCCHHHHHHHHHHHHHHHH
T ss_pred             ---cHHhhHHHHHHHHcCcccccc
Confidence               234567788888777766654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.6e-14  Score=110.63  Aligned_cols=146  Identities=12%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch-----HHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSS-RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT-----SSYY   80 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~   80 (189)
                      .+++|+|+|.+|+|||||+|+|.+........ .....+.+.....+...+ ...+.+|||||........     ....
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            47899999999999999999999754322111 011111122222232222 1246899999976433222     2234


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc---------------------------------
Q psy17231         81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH---------------------------------  127 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~---------------------------------  127 (189)
                      ..+|.++++.|..-.+.   -...+..+...  ++|+++|.||+|..                                 
T Consensus       134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN---DIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GGCSEEEEEESSCCCHH---HHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcceEEEEecCCCCCHH---HHHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            46777777766432222   12333444444  79999999997731                                 


Q ss_pred             ccCCceEEeeccC--CCCHHHHHHHHHHHHHHh
Q psy17231        128 NLISSTYKTSCKT--GEGVEEMFADIGRQLILS  158 (189)
Q Consensus       128 ~~~~~~~~~Sa~~--~~~i~~~~~~i~~~i~~~  158 (189)
                      -...++|.+|...  ..+++++.+.+.+.+.+.
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            0022678888764  458999988887765443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.1e-14  Score=106.51  Aligned_cols=122  Identities=16%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC--CCC---------------CCC----------CCcccceeeeeEEEEEECCe
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFI---------------SSS----------SRKSTLGLDNFNKEYKVDDR   57 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~---------------~~~----------~~~~t~~~~~~~~~~~~~~~   57 (189)
                      +.++++|+++|..++|||||+.+|+..  ...               ...          +.+...|.++......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            456799999999999999999999521  110               000          00011122333332333333


Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhCCCCc-EEEEeecccccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---F---HVLSQHLLEIVTYAENAK-IFLCGNNEQCHN  128 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~  128 (189)
                      ..+++++|+||+.+|......-...+|++++|+|+.....   +   .+....+......  ++| +||+.||.|+.+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~--gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc--CCCeEEEEEECCCCCC
Confidence            4689999999999998888888899999999999976421   1   1222222222222  554 888999988654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.50  E-value=3e-13  Score=99.98  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch-------H
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT-------S   77 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~   77 (189)
                      ....++|+++|.+|+|||||+|++.+..........+++ ...........+  ..+.++||||..+.....       .
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T-~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcc-eeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHH
Confidence            356799999999999999999999987654433322322 133344445555  468999999975432211       1


Q ss_pred             --HHhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231         78 --SYYKFAEAAILVFSLDNAA---SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus        78 --~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                        ......+++++|++++...   .-...-.++..+....-..++|+|+||+|...
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence              1123457888998886532   11222233333332212368999999999754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.35  E-value=1.5e-12  Score=94.81  Aligned_cols=97  Identities=14%  Similarity=-0.005  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCccccccchHH---H--hcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-
Q psy17231         59 IQMQLWDTGGMERVASITSS---Y--YKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-  129 (189)
                      ..+.+.|+||+.++......   .  ....+.++++.|+.   +++.+............. -..|.++|.||.|+... 
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH-hCCCceeeeeccccccHH
Confidence            35789999998765432211   1  22456888898864   445443332222222222 27999999999774421 


Q ss_pred             ------------------------------------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ------------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ------------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                                                ..+++.+||++|+|+++++..+.+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence                                                      237899999999999999999887654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.3e-10  Score=88.25  Aligned_cols=71  Identities=11%  Similarity=0.079  Sum_probs=45.6

Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------------CCce
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------------ISST  133 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------------~~~~  133 (189)
                      .+...+|.+++|.+....+   .++....-+.+    .+-++|.||+|....                        ..++
T Consensus       163 ~i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         163 EVARMVDCFISLQIAGGGD---DLQGIKKGLME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHHTTCSEEEEEECC---------CCCCHHHHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhhccceEEEEecCCCch---hhhhhchhhhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            4667789888887765443   33322223333    344788899885321                        1368


Q ss_pred             EEeeccCCCCHHHHHHHHHHHH
Q psy17231        134 YKTSCKTGEGVEEMFADIGRQL  155 (189)
Q Consensus       134 ~~~Sa~~~~~i~~~~~~i~~~i  155 (189)
                      +.|||++|.|++++++.|.+..
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHH
Confidence            9999999999999999986643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.05  E-value=7.2e-10  Score=83.95  Aligned_cols=88  Identities=10%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------  129 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------  129 (189)
                      +.+.++.|.|.-.   ........+|..++|......+..+.+.   .-+.    ..+-++|.||+|..+.         
T Consensus       144 ~d~iiiETVG~gq---~e~~~~~~~D~~v~v~~p~~GD~iQ~~k---~gil----E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         144 FDVILVETVGVGQ---SETAVADLTDFFLVLMLPGAGDELQGIK---KGIF----ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CCEEEEEECSSSS---CHHHHHTTSSEEEEEECSCC------CC---TTHH----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEeehhhhh---hhhhhhcccceEEEEeeccchhhhhhhh---hhHh----hhhheeeEeccccccchHHHHHHHH
Confidence            4566777776432   1234556789999999988765433222   1222    2556899999884321         


Q ss_pred             ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231        130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI  156 (189)
Q Consensus       130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  156 (189)
                                      ..+++.+||++|.|+++++++|.+...
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                            237999999999999999999876543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=9.7e-10  Score=83.13  Aligned_cols=85  Identities=21%  Similarity=0.251  Sum_probs=44.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc----eeeeeEE----------------EEEECCeEEEEEEEeCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL----GLDNFNK----------------EYKVDDRSIQMQLWDTGG   68 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~----~~~~~~~----------------~~~~~~~~~~~~i~D~~g   68 (189)
                      ++|.++|.||||||||+|+|.+.+......++.|+    |+.....                .+........+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999987765555444443    2111000                000011236789999999


Q ss_pred             ccccc----cchH---HHhcCCcEEEEEEeCC
Q psy17231         69 MERVA----SITS---SYYKFAEAAILVFSLD   93 (189)
Q Consensus        69 ~~~~~----~~~~---~~~~~~~~~i~v~d~~   93 (189)
                      .....    .+..   ..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            64321    1222   2346789999999985

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=1.2e-09  Score=81.19  Aligned_cols=84  Identities=19%  Similarity=0.110  Sum_probs=54.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERV   72 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   72 (189)
                      .+||.|+|.|+||||||++++..........+..|+  +.....+.+.+.               ...+.++|+||...-
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti--~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTI--EPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCC--CCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCC--CCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            469999999999999999999988765555445554  222233333221               135789999996432


Q ss_pred             c----c---chHHHhcCCcEEEEEEeCC
Q psy17231         73 A----S---ITSSYYKFAEAAILVFSLD   93 (189)
Q Consensus        73 ~----~---~~~~~~~~~~~~i~v~d~~   93 (189)
                      .    .   ..-..++.+|++++|+|+.
T Consensus        80 a~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cccCCCccHHHHHHHHhccceEEEeecc
Confidence            2    1   2345678999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.92  E-value=3.1e-09  Score=79.58  Aligned_cols=86  Identities=21%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGME   70 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~   70 (189)
                      ..++|.|+|.|+||||||+|++..... .....+..|+  +.....+...+.               ...+.+.|.||..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi--~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI--DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC--CTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCc--cCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            468999999999999999999997754 3344444444  333333333321               2468999999865


Q ss_pred             ccc----c---chHHHhcCCcEEEEEEeCCC
Q psy17231         71 RVA----S---ITSSYYKFAEAAILVFSLDN   94 (189)
Q Consensus        71 ~~~----~---~~~~~~~~~~~~i~v~d~~~   94 (189)
                      .-.    .   -.-..++.+|++++|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            322    1   23455779999999999854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=3.8e-08  Score=73.38  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEE------EEEE---CC---------------------
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNK------EYKV---DD---------------------   56 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~------~~~~---~~---------------------   56 (189)
                      ...+|+|+|..++|||||+|+|.+.++.+......|-.......      ....   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            45689999999999999999999988744433222210000000      0000   00                     


Q ss_pred             ------------------eEEEEEEEeCCCccccc-------------cchHHHhcCCc-EEEEEEeCCChhhHHHHHHH
Q psy17231         57 ------------------RSIQMQLWDTGGMERVA-------------SITSSYYKFAE-AAILVFSLDNAASFHVLSQH  104 (189)
Q Consensus        57 ------------------~~~~~~i~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~  104 (189)
                                        ....+.++|+||.....             .+...+....+ ++++|.+.+...+-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              01137899999964321             12334455565 45556666655444455555


Q ss_pred             HHHHHHhCCCCcEEEEeecccccc
Q psy17231        105 LLEIVTYAENAKIFLCGNNEQCHN  128 (189)
Q Consensus       105 ~~~~~~~~~~~p~ivv~nK~d~~~  128 (189)
                      .+.+...  ..++++|.||.|...
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~  206 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSC
T ss_pred             HHHhCcC--CCceeeEEecccccc
Confidence            5554333  579999999988643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.68  E-value=4.2e-08  Score=73.46  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISS   36 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~   36 (189)
                      ...+|+|+|..++|||||+|+|.+.++.+.
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            345899999999999999999998887444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=2.1e-08  Score=74.13  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=37.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME   70 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   70 (189)
                      ...++|+|+|.||||||||+|+|.+......   .++.|.+.....+..+.   .+.++||||.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~---~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT---GDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEE---CCcccccccceEEECCC---CeEEecCCCcc
Confidence            4578999999999999999999998765333   23333333333333332   47899999963

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=3.4e-08  Score=70.50  Aligned_cols=62  Identities=26%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc--e--eeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL--G--LDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~--~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      ...+++|++|||||||+|+|.......+.......  |  .+.....+.+.+.   -.++||||..++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            46789999999999999999765432221111111  1  1222223444432   2689999987654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=9.7e-08  Score=68.30  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS-------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA   73 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   73 (189)
                      .-..+++|++|||||||+|+|.......+.       ...+|   +.....+..++.    .++||||..++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHT---Tt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT---TRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCcee---eeeEEEEecCCC----EEEECCcccccc
Confidence            346789999999999999999754322111       11112   111112334442    488999987764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.08  E-value=9.7e-07  Score=60.19  Aligned_cols=23  Identities=39%  Similarity=0.687  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.02  E-value=1.8e-06  Score=58.46  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=23.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999999974

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.99  E-value=1.7e-06  Score=58.45  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.++|+|+|++||||||+.++|..
T Consensus         3 ~~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           3 LLPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=2.2e-06  Score=58.44  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999974

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.86  E-value=4.7e-06  Score=55.17  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |++.|+||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            779999999999999998643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.84  E-value=4.4e-06  Score=57.65  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+++|+|+|++||||||++++|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999963

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.81  E-value=7.3e-06  Score=56.73  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=23.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+.++|+|+|+|||||||+..+|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.80  E-value=6.7e-06  Score=56.70  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.++|+++|+|||||||+..+|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999963

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.80  E-value=5.9e-06  Score=56.42  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999853

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=3.1e-05  Score=54.80  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231         80 YKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG  143 (189)
Q Consensus        80 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~  143 (189)
                      ..+.|.+++|+.+.+|+ +...+.+++-.....  ++|.++|+||+|+...               .-+++.+|++++.|
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g   85 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG   85 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchh
Confidence            35779999999988764 556778888776666  8999999999986321               23778999999999


Q ss_pred             HHHHHHHH
Q psy17231        144 VEEMFADI  151 (189)
Q Consensus       144 i~~~~~~i  151 (189)
                      ++++.+++
T Consensus        86 ~~~L~~~l   93 (225)
T d1u0la2          86 IEELKEYL   93 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HhhHHHHh
Confidence            99988776

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.76  E-value=7.6e-06  Score=56.08  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|+|||||||+.++|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=8.6e-06  Score=55.71  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|+|+|||||||+.++|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999963

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8e-06  Score=54.84  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -+.|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.73  E-value=1.2e-05  Score=55.51  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++..|+|+|+|||||||++++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4456788999999999999999964

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.1e-05  Score=55.06  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~   29 (189)
                      +||+++|+|||||||..++|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999995

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.5e-05  Score=54.53  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999964

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.3e-05  Score=53.96  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHH
Q psy17231          9 QKVI-LCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~-i~G~~g~GKTtli~~l~   29 (189)
                      +||+ |+|.+|||||||+++|.
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            3554 99999999999999995

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.4e-05  Score=52.99  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.61  E-value=1.6e-05  Score=53.37  Aligned_cols=21  Identities=43%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -|+|.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999974

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.2e-05  Score=54.16  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++.|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999953

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=3e-05  Score=52.73  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..++.-|+++|++|||||||++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567888999999999999999963

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2e-05  Score=53.34  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999963

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=0.00017  Score=52.58  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCCCC
Q psy17231         77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTGEG  143 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~~~  143 (189)
                      ...+..+|++++|.|+.++.+...  ..+..+   ..++|.|+|.||+|+..             ....++.+|++++.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---HcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence            456789999999999988755422  122222   23789999999999642             234788999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy17231        144 VEEMFADIGRQLILS  158 (189)
Q Consensus       144 i~~~~~~i~~~i~~~  158 (189)
                      +.++...+.+.+.+.
T Consensus        85 ~~~~~~~~~~~l~~~   99 (273)
T d1puja_          85 LNQIVPASKEILQEK   99 (273)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhh
Confidence            999888877666544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.50  E-value=3.8e-05  Score=51.68  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.5e-05  Score=52.56  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999963

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.49  E-value=3.4e-05  Score=54.18  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+++.|+|-||+||||||..+.|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            5678899999999999999999963

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=5.6e-05  Score=50.61  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.-++|+|++||||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344566899999999999999964

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00066  Score=49.42  Aligned_cols=100  Identities=20%  Similarity=0.136  Sum_probs=54.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhCCCCC--CC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYDTFIS--SS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------   74 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------   74 (189)
                      .+-.-|.|+|+.++|||+|+|+|.+....-  .. ....|.|+-....... .+....+.++||.|......        
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~~~~~~~~~~~~~  108 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDVEKGDNQNDSW  108 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEecccccccccccchhHHH
Confidence            334456699999999999999998765321  11 1123444333222221 23345688999999643221        


Q ss_pred             chHHHhcCCcEEEE-EEeCCChhhHHHHHHHHH
Q psy17231         75 ITSSYYKFAEAAIL-VFSLDNAASFHVLSQHLL  106 (189)
Q Consensus        75 ~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~  106 (189)
                      +.-....-+++.|+ ++...+...++.+.....
T Consensus       109 i~~l~~llSs~~i~N~~~~~~~~~l~~L~~~~~  141 (277)
T d1f5na2         109 IFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE  141 (277)
T ss_dssp             HHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHHHHhCEEEEeccccCcHHHHHHHHHHHH
Confidence            11111223454444 555556666555544333

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=4.6e-05  Score=52.84  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.4e-05  Score=52.43  Aligned_cols=21  Identities=29%  Similarity=0.683  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.39  E-value=5.9e-05  Score=54.38  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+.-|++.||||||||||++++...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445889999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.39  E-value=4.4e-05  Score=51.19  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999953

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=5.7e-05  Score=51.71  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..++-|.|-|++|||||||+++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567788999999999999999963

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.36  E-value=5.1e-05  Score=51.39  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -|+|.|++||||||++++|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36789999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=5.4e-05  Score=51.66  Aligned_cols=21  Identities=38%  Similarity=0.524  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.34  E-value=5.8e-05  Score=51.30  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=17.9

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHH
Q psy17231          9 QKVI-LCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~-i~G~~g~GKTtli~~l~   29 (189)
                      +||+ |.|.+||||||+++.|.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4665 67999999999999995

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.3e-05  Score=51.35  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+|+||+|+||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999974

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=7.4e-05  Score=53.11  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+...+++.||||+||||+++.+...
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.0001  Score=50.72  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-.|+|+|+|||||||+..+|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44677999999999999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=4.3e-05  Score=52.29  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.+.|+++|++||||||+.+.|..
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567888999999999999999964

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=7.9e-05  Score=52.88  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457999999999999999999743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=7.2e-05  Score=51.53  Aligned_cols=20  Identities=40%  Similarity=0.707  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.27  E-value=9.8e-05  Score=49.44  Aligned_cols=22  Identities=32%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|+|.|++||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4667799999999999999753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=8e-05  Score=53.32  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-++.|+|++|+|||||++.+.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            357999999999999999999754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.9e-05  Score=52.70  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.++|++|||||||++.+.+-
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            46789999999999999998644

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=8.8e-05  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      =|+|+||+|||||||+++|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3679999999999999999753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.22  E-value=9.4e-05  Score=49.83  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999996

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.21  E-value=3.3e-05  Score=53.30  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..-|+|+|+|||||||+..+|..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34477999999999999999964

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=6.1e-05  Score=53.44  Aligned_cols=69  Identities=19%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEeeccCCC
Q psy17231         81 KFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGE  142 (189)
Q Consensus        81 ~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~  142 (189)
                      .+.|.+++|+++.+|+ +...+.+++-.....  +++.++|+||+|+...                 .-+++.+|++++.
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~   86 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQD   86 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHT
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChh
Confidence            5789999999988764 567777777665555  8999999999997421                 2378999999999


Q ss_pred             CHHHHHHHH
Q psy17231        143 GVEEMFADI  151 (189)
Q Consensus       143 ~i~~~~~~i  151 (189)
                      |++++.+++
T Consensus        87 gl~~L~~~l   95 (231)
T d1t9ha2          87 SLADIIPHF   95 (231)
T ss_dssp             TCTTTGGGG
T ss_pred             HHHHHHHhh
Confidence            999887655

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=9.3e-05  Score=53.37  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-++.|+|++|||||||++.+.+-
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            347999999999999999999743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=0.00015  Score=48.53  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|+|.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999999743

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=9.6e-05  Score=51.41  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999998543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.17  E-value=0.00014  Score=52.22  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+...|++.||||||||+|++.+..
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3456799999999999999999975

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.17  E-value=9.7e-05  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.++|++|||||||++.+.+-
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCcchhhHhccCC
Confidence            36789999999999999987754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.17  E-value=0.00011  Score=52.65  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-++.|+|++|+|||||++.+.+-
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=0.00012  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .++++||+|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999997543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00012  Score=52.78  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.+.|+|++|||||||++.+.+-
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcc
Confidence            347899999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00014  Score=51.94  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            357899999999999999997543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00017  Score=50.20  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++-|.|.|++|||||||.+.|..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999999999853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00014  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.+.|+|++|+|||||++.+.+-
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            347899999999999999999854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00015  Score=53.80  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++-.++++||||||||.|++++...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4567899999999999999999754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.04  E-value=0.00017  Score=51.46  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            367899999999999999998654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00026  Score=48.84  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+-+++++|++|||||++++.|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            4558999999999999999998743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00015  Score=51.74  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --+.++|++|||||||++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            357899999999999999998643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.00019  Score=49.22  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            356788999999999999999999743

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.01  E-value=0.00015  Score=51.37  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -+.++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            57899999999999999998654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.00  E-value=0.00023  Score=50.14  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+++.||+|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00028  Score=50.30  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...+++.||+|+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999854

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.96  E-value=0.00029  Score=50.37  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..-.++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00025  Score=50.43  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..++++.||+|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346999999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00033  Score=50.80  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+-+++++|++|||||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            4468999999999999999998643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.00014  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .-+++|+|++|||||||++.+.+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            35899999999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00017  Score=51.21  Aligned_cols=22  Identities=41%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -+.++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=50.83  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00041  Score=49.67  Aligned_cols=24  Identities=42%  Similarity=0.556  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +-.+++.||+|+|||+|++.+...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            346999999999999999999853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00052  Score=46.79  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      .++-|.|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            56788999999999999999987543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.0006  Score=47.67  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .++..|+++|++||||||.+-+|.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456778899999999999988885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.82  E-value=0.00016  Score=51.66  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -.+.++|++|||||||++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            468899999999999999998654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.81  E-value=0.00032  Score=50.60  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -.+.|+|++|||||||++.+.+-
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            36789999999999999999754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.00043  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --+.++|+.|+|||||++.+.+-.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999998654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.81  E-value=0.00032  Score=50.18  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.++|.|++|+|||||++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00037  Score=48.46  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -|+|.|||||||||+...|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46778999999999999995

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.00032  Score=52.30  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .+|+|.|++|||||||++.|...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999853

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00046  Score=49.68  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++-.+++.||||+|||+|++.+...
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3456999999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00046  Score=49.68  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +-.+++.||||||||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            44699999999999999999984

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.76  E-value=0.00023  Score=51.26  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999743

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.75  E-value=0.00057  Score=47.60  Aligned_cols=25  Identities=24%  Similarity=0.174  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.+-|.+.|.||+|||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999999963

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.75  E-value=0.00045  Score=48.25  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=15.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ++.-|+++|++||||||.+-+|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45667789999999999988885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.74  E-value=0.00038  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            46899999999999999998653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00067  Score=50.10  Aligned_cols=27  Identities=22%  Similarity=0.156  Sum_probs=22.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ....++-|.|.|++|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            346678999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.00047  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+-+|+++||+|||||-|+++|..
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHH
Confidence            355999999999999999999963

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00042  Score=48.56  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++++.||+|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            35899999999999999988643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00076  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ..+.-|+++|++||||||.+-+|.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345667899999999999999995

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00051  Score=48.31  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..+++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.66  E-value=0.00075  Score=46.96  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .++.-|+++|++||||||.+-+|.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345567899999999999998885

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00052  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++++.||+|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999999754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00086  Score=48.43  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +...|++.|++|+|||+|++++...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3456999999999999999999744

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.0057  Score=40.38  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST   42 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t   42 (189)
                      +..-|++-|+=|+|||||++.+...--.......||
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPT   67 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT   67 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCc
Confidence            445688999999999999999986543333333444

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00087  Score=46.13  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998863

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.43  E-value=0.00093  Score=46.47  Aligned_cols=62  Identities=13%  Similarity=0.028  Sum_probs=34.6

Q ss_pred             EEEEEEeCCCccccccc----hHHH--hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231         59 IQMQLWDTGGMERVASI----TSSY--YKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQC  126 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~  126 (189)
                      ..+.++||+|.......    +..+  ....+-+++|.|.+.. +..+.+..+.    ...  .+-=+++||.|.
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~----~~~--~~~~~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFD----EKV--GVTGLVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHH----HHT--CCCEEEEECGGG
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHH----hhC--CCCeeEEeecCc
Confidence            46799999996544331    1111  2356788889987654 3333333322    221  223378899774

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.39  E-value=0.0013  Score=49.69  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++-.+++.||||+|||+|+..+..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            4455789999999999999999974

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.29  E-value=0.0013  Score=49.76  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      +.++-+++++||+|||||-|.++|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            34677899999999999999999964

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0019  Score=47.72  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+.-.++++||+|||||.|.+.+..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3444788999999999999999963

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0021  Score=46.80  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=20.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHH
Q psy17231          5 KVPEQKVILCGEYGVGKSSLFRRY   28 (189)
Q Consensus         5 ~~~~~~i~i~G~~g~GKTtli~~l   28 (189)
                      ...++=|.|-|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            456788899999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.00091  Score=50.97  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=18.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .+-+++++|+||||||++++.|.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHH
Confidence            34568999999999999986664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.22  E-value=0.00056  Score=50.94  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++++.|+||+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999999963

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --+.|.|++|+|||+|+..+...-
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357799999999999999997543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.10  E-value=0.001  Score=49.63  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=25.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          4 IKVPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ++|..++|+|=|+-|+||||+++.|...
T Consensus         1 ~~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           1 VKMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CCEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999999999754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0017  Score=44.82  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0021  Score=44.98  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|.|++|+|||+|+..+...
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            35779999999999999998744

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.87  E-value=0.0036  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..-|.|.|++|+|||||+..+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345779999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0025  Score=44.22  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      =|+|-|+.||||||+++.|.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36777999999999888874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.85  E-value=0.0024  Score=45.00  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --++|.|+||+|||+|.-.+...-
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            357799999999999999997544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.84  E-value=0.0027  Score=46.98  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.83  E-value=0.0034  Score=42.28  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ..-|++.|++|+||||+.-.|....+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            34689999999999999999886543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0039  Score=43.01  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      +-|.|.|..||||||+++.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4577999999999999999865544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0021  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -.|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.77  E-value=0.0014  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      ++.-|.|.|++||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34458999999999999999884

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0028  Score=44.37  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-++|.|--|+|||||++++...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            34678999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0047  Score=42.64  Aligned_cols=24  Identities=13%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +..+++.|++|+||||+++.+...
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Confidence            455999999999999999988653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.65  E-value=0.004  Score=41.96  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ..-+++.|++|+||||+.-.|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            4568999999999999999998544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.00055  Score=46.52  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      .+|+|+.|+|||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999995

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0056  Score=42.08  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +-|.|.|..||||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56789999999999999988643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.55  E-value=0.0037  Score=43.82  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .--++|.|+||+|||+|+.++...
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            346789999999999999999654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0057  Score=43.08  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ..+++.|++|+||||+++.+..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.41  E-value=0.0058  Score=40.88  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDTF   33 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~~   33 (189)
                      ..-|++.|++|+||||+.-.+....+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            45689999999999999988876543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0056  Score=42.89  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      --|+|=|..||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.37  E-value=0.0045  Score=43.14  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      --++|.|++|+|||+|+..+...
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45779999999999999999743

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.005  Score=43.18  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .--++|.|++|+|||+|...+...
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.0028  Score=46.16  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      .+++|+.||||||++.++.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4799999999999999883

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.20  E-value=0.0061  Score=41.85  Aligned_cols=26  Identities=19%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .++-.+++.||+++|||.|+.++..-
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHH
Confidence            45567899999999999999998743

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.14  E-value=0.0052  Score=45.69  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ..++|+|=|+-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999999743

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.14  E-value=0.0065  Score=42.15  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy17231         11 VILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~~   31 (189)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.03  E-value=0.0066  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy17231         10 KVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|++.|+.|+||||.+..+...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3889999999999999999764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.007  Score=41.93  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      =|++-|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.012  Score=43.28  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      .-.++++||+|+|||.+.+.|...
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHH
Confidence            336789999999999999999644

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.82  E-value=0.0082  Score=41.48  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=18.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~   29 (189)
                      .--++|.|++|+|||+|+..+.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3457799999999999987764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.0076  Score=45.52  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      -+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999984

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.70  E-value=0.0089  Score=44.29  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++|.|=|+-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46799999999999999999973

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.62  E-value=0.01  Score=42.45  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -++|.|+||+|||+|+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999988885

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0095  Score=45.43  Aligned_cols=22  Identities=41%  Similarity=0.762  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -+++|+|++|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999887753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.26  E-value=0.0088  Score=43.19  Aligned_cols=19  Identities=16%  Similarity=0.328  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHH-HHHH
Q psy17231         10 KVILCGEYGVGKSSL-FRRY   28 (189)
Q Consensus        10 ~i~i~G~~g~GKTtl-i~~l   28 (189)
                      .++|+|++|+||||. ++++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            378999999999974 4544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.014  Score=41.58  Aligned_cols=20  Identities=35%  Similarity=0.248  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -.+|.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46699999999999998875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.13  E-value=0.011  Score=43.08  Aligned_cols=19  Identities=21%  Similarity=0.427  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCHHHH-HHHH
Q psy17231         10 KVILCGEYGVGKSSL-FRRY   28 (189)
Q Consensus        10 ~i~i~G~~g~GKTtl-i~~l   28 (189)
                      .++|.|++||||||. ++++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHH
Confidence            478999999999964 4443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.95  E-value=0.022  Score=40.80  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .++-.+++.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4456778999999999999999974

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.79  E-value=0.021  Score=39.88  Aligned_cols=21  Identities=19%  Similarity=0.131  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -|.|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999964

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.021  Score=41.38  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|++|+|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999988753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.025  Score=42.35  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRY   28 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l   28 (189)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            5678999999999987554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.048  Score=34.01  Aligned_cols=25  Identities=12%  Similarity=0.062  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          6 VPEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      .+-+.|++-|.+|+||+||.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4568899999999999999999963

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.17  E-value=0.044  Score=38.66  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      ...|+|.|++|+||+.+.+.+...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHh
Confidence            446899999999999999999753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.62  E-value=0.052  Score=38.94  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|+.|+|++|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999988754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.49  E-value=0.064  Score=37.91  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCccccccc-hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcE-EEEeeccc
Q psy17231         59 IQMQLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNNEQ  125 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~d  125 (189)
                      +.+.++|+|+....... .......+|.++++... +..++......+..+....  .+.++ -++.|+.+
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~  185 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRK  185 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCS
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeec
Confidence            56889999875433222 22334567877777765 5666665555555554433  23333 36778744

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.073  Score=37.89  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy17231         10 KVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~~   30 (189)
                      -+.+.|++|+|||||+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            456999999999999988853

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.1  Score=35.39  Aligned_cols=24  Identities=8%  Similarity=-0.053  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~   30 (189)
                      ....+++-|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.093  Score=37.33  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeecc
Q psy17231         85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNE  124 (189)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~  124 (189)
                      .+++|-. -++.+..+..+.+..+...  ++|+ -+|.||.
T Consensus       200 ~~~lVt~-pe~~~~~~~~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVAR-LQKSTLQEVARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEE-SCHHHHHHHHHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             eeeEecC-cchhHHHHHHHHHHHHHhc--CCCceEEEEcCC
Confidence            4444443 3566677777777777766  5665 4777883

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.091  Score=36.67  Aligned_cols=20  Identities=35%  Similarity=0.441  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -++|.||..+||||+++.+.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHH
Confidence            36799999999999999983

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.1  Score=35.22  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=17.6

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHH
Q psy17231          9 QKVILCGEY-GVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~-g~GKTtli~~l~   29 (189)
                      -|+.|.|-. ||||||+.--|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            478999996 999999887773

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.099  Score=36.98  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=16.7

Q ss_pred             CCceEEE-EEcCCCCCHHHHHHHH
Q psy17231          6 VPEQKVI-LCGEYGVGKSSLFRRY   28 (189)
Q Consensus         6 ~~~~~i~-i~G~~g~GKTtli~~l   28 (189)
                      .+..+|+ +.|..||||||+.-.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHH
Confidence            3445666 5599999999975555

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.70  E-value=0.11  Score=36.06  Aligned_cols=19  Identities=37%  Similarity=0.597  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      ++|.||..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999983

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.34  E-value=0.13  Score=36.76  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=34.2

Q ss_pred             EEEEEEeCCCccccccchHHH-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEE-EEeeccc
Q psy17231         59 IQMQLWDTGGMERVASITSSY-YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNNEQ  125 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i-vv~nK~d  125 (189)
                      +.+.++|+|+........... ...++.++++.. .+..+...+...+..+....  .+.++. +|.|+.+
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~  188 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN  188 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhc
Confidence            567889988654332222222 234565555544 45555555554444443322  345544 6778743

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.60  E-value=0.094  Score=38.15  Aligned_cols=15  Identities=33%  Similarity=0.598  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q psy17231         11 VILCGEYGVGKSSLF   25 (189)
Q Consensus        11 i~i~G~~g~GKTtli   25 (189)
                      -++.|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            469999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.31  E-value=0.097  Score=38.21  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHH
Q psy17231         10 KVILCGEYGVGKSSLF   25 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli   25 (189)
                      --++.|.+|+|||||.
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            3589999999999965

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.26  E-value=0.15  Score=31.85  Aligned_cols=21  Identities=29%  Similarity=0.175  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17231          9 QKVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~   29 (189)
                      -..+|.++.|+|||+++-.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            455789999999999887654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.05  E-value=0.12  Score=37.11  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231          9 QKVILCGEYGVGKSSLFRRYAYD   31 (189)
Q Consensus         9 ~~i~i~G~~g~GKTtli~~l~~~   31 (189)
                      -|+.|+|++|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            48899999999999998877643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.74  E-value=0.19  Score=33.48  Aligned_cols=20  Identities=20%  Similarity=0.192  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy17231         11 VILCGEYGVGKSSLFRRYAY   30 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~~   30 (189)
                      ++|+|...||||.+..++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999874

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.44  E-value=0.13  Score=37.64  Aligned_cols=16  Identities=31%  Similarity=0.524  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCHHHHH
Q psy17231         10 KVILCGEYGVGKSSLF   25 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli   25 (189)
                      .-++.|.+|+|||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3469999999999987

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.41  E-value=1.1  Score=28.35  Aligned_cols=25  Identities=36%  Similarity=0.377  Sum_probs=18.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          7 PEQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         7 ~~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      ++.||.|+|...+|-+ +...+....
T Consensus         4 ~~~KI~IIGaG~VG~~-~A~~l~~~~   28 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSS-YAFAMAQQG   28 (146)
T ss_dssp             TBCEEEEECCSHHHHH-HHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHH-HHHHHHhcC
Confidence            3679999999889966 566665443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.32  E-value=0.13  Score=31.76  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=14.7

Q ss_pred             CCceEEEEEcCCCCCHHH
Q psy17231          6 VPEQKVILCGEYGVGKSS   23 (189)
Q Consensus         6 ~~~~~i~i~G~~g~GKTt   23 (189)
                      .+..++++.+++|+|||.
T Consensus         5 ~~~~~~il~~~tGsGKT~   22 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTR   22 (140)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             HcCCcEEEEcCCCCChhH
Confidence            445678888999999993

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.29  E-value=0.2  Score=35.81  Aligned_cols=25  Identities=16%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231          8 EQKVILCGEYGVGKSSLFRRYAYDT   32 (189)
Q Consensus         8 ~~~i~i~G~~g~GKTtli~~l~~~~   32 (189)
                      --|+.|+|++|+|||+|+..+....
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             CceEeeccCCCCChHHHHHHHHhhh
Confidence            3488999999999999998765443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.83  E-value=0.26  Score=35.04  Aligned_cols=20  Identities=15%  Similarity=0.209  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~~l~   29 (189)
                      -+.+.|++++|||+|+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            35699999999999987775

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.79  E-value=0.25  Score=35.08  Aligned_cols=19  Identities=21%  Similarity=0.198  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy17231         11 VILCGEYGVGKSSLFRRYA   29 (189)
Q Consensus        11 i~i~G~~g~GKTtli~~l~   29 (189)
                      +-+.|++++|||+|+-.+.
T Consensus        60 tei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHH
Confidence            4589999999999998885

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.14  E-value=0.28  Score=31.12  Aligned_cols=16  Identities=6%  Similarity=0.179  Sum_probs=14.0

Q ss_pred             CCcEEEEeeccccccc
Q psy17231        114 NAKIFLCGNNEQCHNL  129 (189)
Q Consensus       114 ~~p~ivv~nK~d~~~~  129 (189)
                      ++++++.|-..|..+.
T Consensus       106 g~~Viv~GLd~Df~~~  121 (139)
T d2b8ta1         106 GFVVIISGLDKNFKGE  121 (139)
T ss_dssp             TCEEEEECCSBCTTSS
T ss_pred             CceEEEEEeccccccC
Confidence            7999999999888765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.47  E-value=3.3  Score=27.54  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=44.0

Q ss_pred             EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeecccc
Q psy17231         58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQC  126 (189)
Q Consensus        58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~  126 (189)
                      .+.+.++|+++..  .......+..+|.++++... +..++....+.+..+.+.  +.|++ +|.|+.+.
T Consensus       111 ~~d~IiiD~~~~~--~~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~  175 (237)
T d1g3qa_         111 KFDFILIDCPAGL--QLDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA--GLAILGFVLNRYGR  175 (237)
T ss_dssp             GCSEEEEECCSSS--SHHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT--TCEEEEEEEEEETS
T ss_pred             cCCEEEEcccccc--cccchhhhhhhhcccccccc-cceecchhhHHHHHHhhh--hhhhhhhhhccccc
Confidence            3568899998753  23345567789988888875 455666666666555544  67877 88899654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=1.2  Score=27.82  Aligned_cols=46  Identities=4%  Similarity=-0.006  Sum_probs=29.8

Q ss_pred             HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231         78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL  129 (189)
Q Consensus        78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~  129 (189)
                      ......++  +.+  +..+=|+.+..+...+...  ++++++.|-..|..+.
T Consensus        69 ~~~~~~d~--I~I--DEaQFf~dl~~~~~~~~~~--~~~Viv~GLd~Df~~~  114 (133)
T d1xbta1          69 QEALGVAV--IGI--DEGQFFPDIVEFCEAMANA--GKTVIVAALDGTFQRK  114 (133)
T ss_dssp             HHHHTCSE--EEE--SSGGGCTTHHHHHHHHHHT--TCEEEEECCSBCTTSS
T ss_pred             hhhcccce--EEe--ehhHHHHHHHHHHHHHHhc--CCcEEEEEeccccccC
Confidence            34556664  222  3455555666666666654  8999999999887664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.16  E-value=0.41  Score=31.72  Aligned_cols=17  Identities=18%  Similarity=0.315  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHHH
Q psy17231         10 KVILCGEYGVGKSSLFR   26 (189)
Q Consensus        10 ~i~i~G~~g~GKTtli~   26 (189)
                      ++++.+|+|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            57899999999997433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.75  E-value=4.7  Score=25.20  Aligned_cols=49  Identities=8%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             HHHhcCCcEEEEEEeCCC-----hh-----hHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231         77 SSYYKFAEAAILVFSLDN-----AA-----SFHVLSQHLLEIVTYAENAKIFLCGNNEQ  125 (189)
Q Consensus        77 ~~~~~~~~~~i~v~d~~~-----~~-----s~~~~~~~~~~~~~~~~~~p~ivv~nK~d  125 (189)
                      ...++++|++++..-...     +.     ...-++.....+.++.++.-++++.|=.|
T Consensus        63 ~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             HHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            456788998888766432     11     11333566666666666666666666555

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.57  E-value=0.58  Score=31.62  Aligned_cols=62  Identities=13%  Similarity=0.034  Sum_probs=37.9

Q ss_pred             EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccc
Q psy17231         59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQ  125 (189)
Q Consensus        59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d  125 (189)
                      +.+.++|+|+...  ......+..+|.+++|... +..+.......+....+.  +.+++ +|.|+.+
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~-~~~~~~~~~~~~~~~~~~--~~~~~~iv~N~~~  172 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL--GTKVLGVVVNRIT  172 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH--TCEEEEEEEEEEC
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeeccc-cccchhhhhhhhhhhhhc--ccccccccccccc
Confidence            4578899887543  3334556678988888876 444455554444444444  34544 7889843