Psyllid ID: psy17253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEccccccccccHHHHcccccccccEEEccccccccccHHHHccccccEEEEEcccccccccccccccccccccccccccHHHHHcccccccEEEcccccccccHHHHHccccccEEEccccccccccccccccccccccccEEEccccccccHHHHHHccccccEEEcccccccccccccccccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccccEEEEccccccHHHHHHHcccccccccEEEEEcccccccccHHHHHccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHcccHcccEEEccccccccccHHHcccccccEEEcccccccEcccHHHcccHHHHHHHEEEccccccccccHHHcccccccEEEcccccccEccHHHHcccHcccEEEccccccEEcccccc
Coil and Loop (DISEMBL)
mrreinpctckcrtspispivVECEKMTSFGQVVDALQDRFGNDSISLKIAVSnlndlpsktFQELGLQIVNLKltknnlrpdgaalrpidvcappstldnlknQVQGVTNIFELKLQHNeienldgalmgihglsrldlshnklrtispddfigldsvTNIFELKLQHNeienldgalmgihglsrldlshnklrtispddfigldslkmLDISHNLLTTLEETSK
Flexible Loop (DISEMBL)
mrreinpctckcrtspispIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHnllttleetsk
Low Complexity Region (SEG)
MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK
Disordered region (IsUnstruct)
******PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT*******
Disordered Region (DISOPRED)
**REINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL***L*****
Disordered Region (DISEMBL)
MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK
Disordered Region (DISPRO)
****INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q66JT1	795	Leucine-rich repeat-conta	yes	N/A	0.744	0.212	0.331	6e-11
P35859	603	Insulin-like growth facto	yes	N/A	0.506	0.190	0.358	5e-10
Q8BGR2	859	Leucine-rich repeat-conta	no	N/A	0.511	0.135	0.319	7e-10
P70389	603	Insulin-like growth facto	no	N/A	0.506	0.190	0.366	8e-10
Q5U308	858	Leucine-rich repeat-conta	no	N/A	0.511	0.135	0.319	1e-09
Q7L1W4	858	Leucine-rich repeat-conta	yes	N/A	0.488	0.129	0.324	3e-09
Q6UXM1	1119	Leucine-rich repeats and	no	N/A	0.779	0.158	0.271	3e-09
Q6R6I6	758	Relaxin receptor 1 OS=Rat	no	N/A	0.533	0.159	0.365	7e-09
Q5R5V8	757	Relaxin receptor 1 OS=Pon	no	N/A	0.533	0.159	0.357	9e-09
Q9HBX9	757	Relaxin receptor 1 OS=Hom	no	N/A	0.533	0.159	0.357	9e-09

>sp|Q66JT1|LRC8E_MOUSE Leucine-rich repeat-containing protein 8E OS=Mus musculus GN=Lrrc8e PE=2 SV=2

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 15/184 (8%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ-- 105
           L++    L  +P   F    LQ ++LK   N+LR     L     C    TL    NQ  
Sbjct: 586 LELVACGLERIPHAIFSLGALQELDLK--DNHLRSIEEILS-FQHCRKLVTLRLWHNQIA 642

Query: 106 -----VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
                V+ + ++ +L L HN++E L   L    GL  LDLSHN LR++ P+  +GL  + 
Sbjct: 643 YVPEHVRKLRSLEQLYLSHNKLETLPTQLGQCFGLRLLDLSHNGLRSLPPE--LGL--LQ 698

Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           ++  L L +N +E+L   L   H L  L L +N L  +SP D   L +L  L++  N L 
Sbjct: 699 SLQHLALSYNALESLPDELFFCHKLRTLLLGYNHLTQLSP-DVAALQALSRLELKGNRLE 757

Query: 221 TLEE 224
           TL E
Sbjct: 758 TLPE 761

Mus musculus (taxid: 10090)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
            QG+ N+ EL L  N++  L  AL  G+  L  LDLS N LR++  + F+ L  +  ++ 
Sbjct: 190 FQGLGNLHELVLAGNKLTYLQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLY- 248

Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
             L  N I  +  GA +G+  L  LDLSHN++  +  D F GL  L +L ++HN + +L 
Sbjct: 249 --LDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLR 306

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
           N ++ + N+ EL+LQ+ E+E +  A+  +  L  LDL  N +RTI  ++ I    +  + 
Sbjct: 630 NSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTI--EEIISFQHLKRLT 687

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            LKL HN+I  +  ++  +  L  L  S+NKL ++ P     L  L+ LD+S+N ++T+
Sbjct: 688 CLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL-PTAVFSLQKLRCLDVSYNNISTI 745

Mus musculus (taxid: 10090)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
            QG+ N+ EL L  N++  L  AL+ G+  L  LDLS N LR++  + FI L  +  ++ 
Sbjct: 190 FQGLGNLHELVLAGNKLTYLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLY- 248

Query: 165 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
             L  N I  +   A +G+  L  LDLSHN++  +  D F GL  L +L ++HN +T+L 
Sbjct: 249 --LDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLR 306

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|Q5U308|LRC8D_RAT Leucine-rich repeat-containing protein 8D OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
           N ++ + N+ EL+LQ+ E+E +  A+  +  L  LDL  N +RTI  ++ I    +  + 
Sbjct: 629 NSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNSIRTI--EEIISFQHLKRLT 686

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            LKL HN+I  +  ++  +  L  L  S+NKL ++ P     L  L+ LD+S+N ++T+
Sbjct: 687 CLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL-PVAVFSLQKLRCLDVSYNNISTI 744

Rattus norvegicus (taxid: 10116)

>sp|Q7L1W4|LRC8D_HUMAN Leucine-rich repeat-containing protein 8D OS=Homo sapiens GN=LRRC8D PE=1 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
           N ++ + N+ EL+LQ+ E+E +  A+  +  L  LDL  N +RTI  ++ I    +  + 
Sbjct: 629 NSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTI--EEIISFQHLKRLT 686

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            LKL HN+I  +  ++  +  L  L  S+NKL ++ P     L  L+ LD+S+N
Sbjct: 687 CLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESL-PVAVFSLQKLRCLDVSYN 739

Homo sapiens (taxid: 9606)

>sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Homo sapiens GN=LRIG3 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 70/247 (28%)

Query: 39  DRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR-PDGAALRPIDVCAPPS 97
           D   N  + LK+  + ++ +P K F+   LQ  +L+L +N ++  DG   + +       
Sbjct: 188 DNLANTLLVLKLNRNRISAIPPKMFKLPQLQ--HLELNRNKIKNVDGLTFQGL------G 239

Query: 98  TLDNLKNQVQGVTNIFE-----------LKLQHNEI-ENLDGALMGIHGLSRLDLSHNKL 145
            L +LK Q  GVT + +           L+L HN + E   G L G+  L  L LS N +
Sbjct: 240 ALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLQELHLSQNAI 299

Query: 146 RTISPD------------------------DFIGLD---------------------SVT 160
             ISPD                         F+GL                       ++
Sbjct: 300 NRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNRVSYIADCAFRGLS 359

Query: 161 NIFELKLQHNEI----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
           ++  L L++NEI    E+++GA  G+  L RL L  N++R+I+   F GLD+L+ LD+S 
Sbjct: 360 SLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHLDLSD 419

Query: 217 NLLTTLE 223
           N + +L+
Sbjct: 420 NAIMSLQ 426

Homo sapiens (taxid: 9606)

>sp|Q6R6I6|RXFP1_RAT Relaxin receptor 1 OS=Rattus norvegicus GN=Rxfp1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
           NL+      +N+  + LQ N I  L   +    H L +L L +NK+R++S   F GL S+
Sbjct: 117 NLRAVPSVSSNVTVMSLQWNFIRTLPPNSFRKYHDLQKLCLQNNKIRSVSVSAFRGLHSL 176

Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
           T   +L L HN I  L  G    +H L  L +  N L  ISP  F GL+SL +L + +N 
Sbjct: 177 T---KLYLSHNRITFLKPGVFEDLHRLEWLIIEDNHLSRISPLTFYGLNSLILLVLMNNA 233

Query: 219 LTTLEE 224
           LT L +
Sbjct: 234 LTRLPD 239

Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5V8|RXFP1_PONAB Relaxin receptor 1 OS=Pongo abelii GN=RXFP1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
           NL+      +N+  + LQ N I  L        H L +L L +NK+ +IS   F GL+S+
Sbjct: 117 NLRAVPSVSSNVTAMSLQWNLIRKLPPDCFKNYHDLQKLYLQNNKITSISIYAFRGLNSL 176

Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
           T ++   L HN I  L  G    +H L  L +  N L  ISP  F GL+SL +L + +N+
Sbjct: 177 TKLY---LSHNRITFLKPGVFEDLHRLEWLIIEDNHLSRISPPTFYGLNSLILLVLMNNV 233

Query: 219 LTTLEE 224
           LT L +
Sbjct: 234 LTRLPD 239

Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP.

Pongo abelii (taxid: 9601)

>sp|Q9HBX9|RXFP1_HUMAN Relaxin receptor 1 OS=Homo sapiens GN=RXFP1 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
           NL+      +N+  + LQ N I  L        H L +L L +NK+ +IS   F GL+S+
Sbjct: 117 NLRAVPSVSSNVTAMSLQWNLIRKLPPDCFKNYHDLQKLYLQNNKITSISIYAFRGLNSL 176

Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
           T ++   L HN I  L  G    +H L  L +  N L  ISP  F GL+SL +L + +N+
Sbjct: 177 TKLY---LSHNRITFLKPGVFEDLHRLEWLIIEDNHLSRISPPTFYGLNSLILLVLMNNV 233

Query: 219 LTTLEE 224
           LT L +
Sbjct: 234 LTRLPD 239

Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
242003810	543	leucine-rich transmembrane protein, puta	0.502	0.209	0.449	4e-22
270003207	584	hypothetical protein TcasGA2_TC002411 [T	0.414	0.160	0.555	1e-19
91080065	509	PREDICTED: similar to AGAP005962-PA [Tri	0.308	0.137	0.555	1e-19
193575713	577	PREDICTED: malignant fibrous histiocytom	0.920	0.362	0.338	7e-17
170045937	686	leucine-rich repeat-containing protein 4	0.568	0.188	0.407	8e-16
157115103	630	leucine-rich transmembrane protein [Aede	0.502	0.180	0.384	1e-15
312376719	939	hypothetical protein AND_12362 [Anophele	0.524	0.126	0.377	2e-14
158295080	830	AGAP005962-PA [Anopheles gambiae str. PE	0.854	0.233	0.347	3e-14
194751195	817	GF10651 [Drosophila ananassae] gi|190625	0.876	0.243	0.302	1e-13
357612148	523	putative leucine-rich transmembrane prot	0.568	0.246	0.446	2e-13

>gi|242003810|ref|XP_002422869.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis] gi|212505751|gb|EEB10131.1| leucine-rich transmembrane protein, putative [Pediculus humanus corporis]

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 88/138 (63%), Gaps = 24/138 (17%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV-------------- 159
           +++L HN ++NL+ A + +  L  L+L+HN L   S  +  GL ++              
Sbjct: 211 DIQLGHNHLKNLNRAFLPMRRLRSLNLTHNLLEEFSFQEIRGLQNLKIVDLSFNKISQLN 270

Query: 160 ----------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
                     T + EL+L+HNEI+ L+G+LMGIHGL +L+LSHNKL TI+PDDFIGL+ L
Sbjct: 271 GKMENLVELETRVEELRLEHNEIKALEGSLMGIHGLQKLNLSHNKLMTIAPDDFIGLEDL 330

Query: 210 KMLDISHNLLTTLEETSK 227
            +LDIS+NLL TL+ETSK
Sbjct: 331 TILDISYNLLQTLDETSK 348

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003207|gb|EEZ99654.1| hypothetical protein TcasGA2_TC002411 [Tribolium castaneum]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 129 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL 188
           ++G+  L  +DLS+N+++T+       ++    + ELKL HNEIE+LDGAL G+  L RL
Sbjct: 414 IVGLQELKSIDLSYNRIKTLIGPATNLVEWNIKLTELKLDHNEIESLDGALSGLPELLRL 473

Query: 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           +LS NKLR ISPDD IGLD L++LD+SHN LTTLEETSK
Sbjct: 474 NLSFNKLRRISPDDLIGLDQLRLLDVSHNYLTTLEETSK 512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080065|ref|XP_966986.1| PREDICTED: similar to AGAP005962-PA [Tribolium castaneum]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 129 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL 188
           ++G+  L  +DLS+N+++T+       ++    + ELKL HNEIE+LDGAL G+  L RL
Sbjct: 339 IVGLQELKSIDLSYNRIKTLIGPATNLVEWNIKLTELKLDHNEIESLDGALSGLPELLRL 398

Query: 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           +LS NKLR ISPDD IGLD L++LD+SHN LTTLEETSK
Sbjct: 399 NLSFNKLRRISPDDLIGLDQLRLLDVSHNYLTTLEETSK 437

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193575713|ref|XP_001949578.1| PREDICTED: malignant fibrous histiocytoma-amplified sequence 1-like [Acyrthosiphon pisum]

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 30/239 (12%)

Query: 1   MRREINPCTCKCRTSPISP-IVVECEKMTSFGQVVDALQDRFGNDSI---SLKIAVSNLN 56
           +RR I+PCTC   T  + P I+V C+KM SF  V+ ALQ++F  D++    L I  S L+
Sbjct: 35  VRRSISPCTCSYFTGMVRPKIMVICQKMVSFESVIGALQNKF--DAVFDYVLNIEYSELH 92

Query: 57  DLPSKTFQELGLQIVNLKLTKNNLR--PDGA----------ALRPIDVCAPPSTLDNLKN 104
           DL ++ F ELG  IV+LKLTKNNL   PD A           L    +CA P+ +     
Sbjct: 93  DLDTRRFNELGFPIVDLKLTKNNLSTLPDEAFIGMNRIRILYLSDNRLCAVPTQI----- 147

Query: 105 QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
             + + +I  L L  N I ++  G    +  ++   ++ N L  I+   F      T + 
Sbjct: 148 -FKHMPSIEVLDLARNSIHSVASGDFQSLSLMNTFVMATNNLTDITNGSF-----PTTLR 201

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           +++L  N +  L+G L     L  L LS+N+L+ +  +  I  D L +LD+S N LT L
Sbjct: 202 KVQLAANNLTELNGNLRNQKELEWLYLSNNRLKNLDGELPIDNDRLIVLDVSKNRLTHL 260

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045937|ref|XP_001850546.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus] gi|167868779|gb|EDS32162.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus]

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
           L NL   +Q +  +      +N +       + G+  L  LDLSHNK+  ++      +D
Sbjct: 268 LTNLNGSLQNMKGLIIANFSYNLLNEFSLQEVTGLRKLRILDLSHNKIEKLTGRMENLVD 327

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           S + I+EL+LQHN +++LDG LMG++ L  L+++HN L TI+PDD IG+++L+ LD+S N
Sbjct: 328 SGSIIYELRLQHNLLKSLDGTLMGLNNLKILNVAHNMLETITPDDLIGMENLEHLDLSFN 387

Query: 218 LLTTLEETSK 227
            L TLEE SK
Sbjct: 388 KLNTLEELSK 397

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115103|ref|XP_001658113.1| leucine-rich transmembrane protein [Aedes aegypti] gi|108877017|gb|EAT41242.1| AAEL007087-PA [Aedes aegypti]

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 24/138 (17%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL----------------- 156
           +L+L  N++ +L+G+L+ + GL   + S N+L   S  +  GL                 
Sbjct: 207 DLQLSENKLTSLNGSLLNMKGLIMANFSFNRLNEFSLQEVQGLRKLRILDLSHNRIEKLI 266

Query: 157 -------DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
                  DS + I+EL+LQHN I++LDG LMG++ L  L+++HN+L  I+PDD IG+++L
Sbjct: 267 GRMENLVDSGSIIYELRLQHNLIKSLDGTLMGLNNLKILNVAHNRLEMITPDDLIGMENL 326

Query: 210 KMLDISHNLLTTLEETSK 227
           + LD+S N L TLEE SK
Sbjct: 327 EHLDLSFNKLKTLEELSK 344

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376719|gb|EFR23726.1| hypothetical protein AND_12362 [Anopheles darlingi]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 24/143 (16%)

Query: 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------------ 156
           V  + EL L  N + +L+G+L+   GL   + S N+L+  S  +  GL            
Sbjct: 425 VERMEELNLAGNRLTHLNGSLLHCKGLINANFSENRLKEFSLQEVAGLRKLRLLDLSHNR 484

Query: 157 ------------DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 204
                       DS   I EL+L +N + +LDGALMG++ L  L+++HN+L+TI+PDD I
Sbjct: 485 IEVLAGRMENMIDSGLIISELRLNNNRLRSLDGALMGLNNLRILNVAHNQLQTITPDDLI 544

Query: 205 GLDSLKMLDISHNLLTTLEETSK 227
           G++ L+ LD+S N L TLEE SK
Sbjct: 545 GMEELERLDLSFNQLKTLEELSK 567

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295080|ref|XP_316002.4| AGAP005962-PA [Anopheles gambiae str. PEST] gi|157015864|gb|EAA11826.4| AGAP005962-PA [Anopheles gambiae str. PEST]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 36/230 (15%)

Query: 1   MRREINPCTCKCRTSP---ISPIVVECEKMTSFGQVVDALQDRFGND-SISLKIAVSNLN 56
           +RREI+PCTC    SP    + I V+CE+M SFGQVV+ALQDRF  D +I L I+ S L 
Sbjct: 21  VRREISPCTC----SPGLFANNIDVKCEQMESFGQVVNALQDRFTEDHNIWLTISHSQLL 76

Query: 57  DLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115
           DL + +F E+ + I +L++  +NL     ++ R +      S  DNL  ++    ++FE 
Sbjct: 77  DLAALSFWEMNMNIKSLRINFDNLSHLPVSSFRNLPRLDLFSAADNLLEEIP--PDMFE- 133

Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175
                           +  L  LD++ +++R IS D F  L    N+  L + +N+++ +
Sbjct: 134 ---------------QMPNLGTLDMARSRIRYISGDTFRHLQ---NLRHLIMGNNQLQRI 175

Query: 176 DGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           D   +   IH L    LS N+LR+++      LD LK+L I+ N LTTL+
Sbjct: 176 DTDALPKTIHSLQ---LSVNQLRSLN-GSIRHLDELKLLFINENNLTTLD 221

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751195|ref|XP_001957912.1| GF10651 [Drosophila ananassae] gi|190625194|gb|EDV40718.1| GF10651 [Drosophila ananassae]

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 26/225 (11%)

Query: 1   MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDS-ISLKIAVSNLNDLP 59
           +R EI+PCTC+   +  + + + CEK+ SF  VVD L ++F  D+ I LKI  S L+DL 
Sbjct: 18  VRPEISPCTCETGKA-WNHVELSCEKLESFNAVVDTLANKFNPDTKIDLKITHSQLDDLE 76

Query: 60  SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH 119
            ++F ++   +  L++  N LR                +L  +    +G++N+  L +  
Sbjct: 77  MRSFTDMNFNLYKLRMKWNGLR----------------SLPEVP--FRGLSNVTYLGIGD 118

Query: 120 NEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA 178
           NE+E +   ++  +  L  LD+    +R +  DDF G+ +VTN+    L  N I  LD  
Sbjct: 119 NELEEIPKHVLSHMPLLQTLDIGRGNIRAVQQDDFRGIQAVTNLI---LPSNNITRLDKG 175

Query: 179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
                 L  L L  N+L T++    + LD L+ L I+ N ++TL+
Sbjct: 176 SFP-RSLLILHLGRNRLETLN-GTLLDLDKLQSLFINANNISTLD 218

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612148|gb|EHJ67839.1| putative leucine-rich transmembrane protein [Danaus plexippus]

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
           L +L   ++ + ++  L L HN +       + G+ GL+ +DLSHNK+  IS      +D
Sbjct: 185 LRSLNGSLRALRSLRYLNLTHNFLTEFSLQEIKGLRGLAVIDLSHNKITKISGSIENLVD 244

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
             T + EL+L HN I NL GALMG+ GL RL+LSHN+L+ IS DD IGL+ L++LD+S+N
Sbjct: 245 VETRVMELRLNHNHILNLGGALMGLRGLLRLNLSHNQLQKISSDDLIGLEDLRLLDVSYN 304

Query: 218 LLTTLEETSK 227
            +TT+ +TSK
Sbjct: 305 HITTMADTSK 314

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
FB|FBgn0033250	470	CG14762 [Drosophila melanogast	0.929	0.448	0.313	8.3e-17
FB|FBgn0052372	817	ltl "larval translucida" [Dros	0.916	0.254	0.256	1.1e-12
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.757	0.284	0.320	2.3e-12
UNIPROTKB|F1MJZ4	610	IGFALS "Uncharacterized protei	0.731	0.272	0.329	3e-12
MGI|MGI:1919517	795	Lrrc8e "leucine rich repeat co	0.744	0.212	0.331	5.8e-12
UNIPROTKB|Q1KS52	606	ALS "Acid-labile subunit" [Sus	0.691	0.259	0.335	6.3e-12
UNIPROTKB|F1PLN5	376	FMOD "Uncharacterized protein"	0.885	0.534	0.313	6.6e-12
MGI|MGI:2144814	719	Lrfn5 "leucine rich repeat and	0.837	0.264	0.285	1.3e-11
RGD|1309357	719	Lrfn5 "leucine rich repeat and	0.837	0.264	0.285	1.3e-11
UNIPROTKB|P35858	605	IGFALS "Insulin-like growth fa	0.722	0.271	0.320	1.7e-11

FB|FBgn0033250 CG14762 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 72/230 (31%), Positives = 114/230 (49%)

Query:     4 EINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSIS--LKIAVSNLNDLPSK 61
             EI PC C  + + +    + CE  T    +  ++    G   I   LK+  +NL  L   
Sbjct:    44 EIAPCICTVKKNGLD---ILCET-TDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGF 99

Query:    62 TFQELGLQ---IVNLKLT---KNNLRPDGAALRPIDVCAPPSTLDNLKNQ-VQGVTNIFE 114
              F  L ++   I N  L    +N L   GA L  +DV    + +  + +Q +Q + ++  
Sbjct:   100 VFLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSL--NQMKTVPSQALQHLFHLLI 157

Query:   115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
             L L HN+I  + + A  G+  L  L L  NK+  I P+ F GL+   +I  L L  N++ 
Sbjct:   158 LNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGLED--HIKRLNLGGNDLT 215

Query:   174 NL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
             N+   AL  +  L +L++  NK+RTIS  DF GL SL  L ++HN++TT+
Sbjct:   216 NIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQSLDSLILAHNMITTV 265

GO:0048812 "neuron projection morphogenesis" evidence=IMP

FB|FBgn0052372 ltl "larval translucida" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 58/226 (25%), Positives = 115/226 (50%)

Query:     1 MRREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDS-ISLKIAVSNLNDLP 59
             +R EI+PCTC+   +  + + + CEK+ SF  VVD+L ++   D+ I LKI  S L+DL 
Sbjct:    18 VRPEISPCTCETGKA-WNHVELSCEKLESFNAVVDSLANKLNADTNIDLKITHSQLDDLE 76

Query:    60 SKTFQELGLQIVNLKLTKNNLR--PDGAALRPID----VCAPPSTLDNL-KNQVQGVTNI 112
              ++F ++   +  L++  N+L+  P+    R +     +    + LD + K+ +  + ++
Sbjct:    77 MRSFTDMNFNLYKLRMQWNSLKSLPE-VPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSL 135

Query:   113 FELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
               L +   +I  +      GI  ++ L L  N +  +    F       ++  L L  N+
Sbjct:   136 LTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSF-----PKSLLILHLGRNQ 190

Query:   172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
             +E+L+G+L  +H L  L ++ N + ++  D+      L++L ++HN
Sbjct:   191 LESLNGSLHDLHNLESLFINANNITSLD-DELPDGGQLRLL-MAHN 234

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005615 "extracellular space" evidence=IDA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 59/184 (32%), Positives = 88/184 (47%)

Query:    48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAALRPIDVCA---PPSTLDNL 102
             L++  + +  L  +TF  LG Q+  L L  N L+    GA L   +V       + +  L
Sbjct:   314 LQLGHNRIWSLAERTFDGLG-QLEVLSLNNNQLQDIKAGAFLGLYNVAVMHLSANCIKTL 372

Query:   103 KNQV-QGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
                V +GVT +  L L+H+ +  +       +  L RL L HN + TI    F  L    
Sbjct:   373 PEYVFEGVTKLHSLHLEHSCLSKIRANTFSSLTSLRRLFLQHNAISTIEDQSFRELHE-- 430

Query:   161 NIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
              + EL L+HN + +L   L +G+  L  L LS N++  IS + F  L  L  LD+SHN L
Sbjct:   431 -LLELDLKHNRLSHLSPQLFVGLSNLEYLFLSFNQIMDISQNTFSPLRRLFWLDLSHNQL 489

Query:   220 TTLE 223
              TL+
Sbjct:   490 ATLD 493

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MJZ4 IGFALS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 62/188 (32%), Positives = 91/188 (48%)

Query:    48 LKIAVSNLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPST--LDNLKN 104
             L +  ++L  LP   FQ L GL+   L L  N L    A L+P   C       LD  +N
Sbjct:   179 LNLGWNSLTVLPDTAFQGLAGLR--ELVLAGNKL----AYLQPPLFCGLGELRELDLSRN 232

Query:   105 QVQGV-TNIF-------ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG 155
              ++ V  N+F       +L L HN +  +  GA +G+  L  LDLSHN++ ++  D F G
Sbjct:   233 TLRSVKANVFVKLPKLQKLYLDHNLVAAVAPGAFLGMKALRWLDLSHNRVGSLLEDSFPG 292

Query:   156 LDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
             L     +  L+L HN +  L       +H L  L L HN+LR +  + F GL  L++L +
Sbjct:   293 L---LGLHVLRLSHNVLAGLRPRTFKDLHFLEELQLGHNRLRQLPEEAFAGLGQLEVLAL 349

Query:   215 SHNLLTTL 222
             + N L  L
Sbjct:   350 NDNQLQEL 357

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1919517 Lrrc8e "leucine rich repeat containing 8 family, member E" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 61/184 (33%), Positives = 89/184 (48%)

Query:    48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ-- 105
             L++    L  +P   F    LQ ++LK   N+LR     L     C    TL    NQ  
Sbjct:   586 LELVACGLERIPHAIFSLGALQELDLK--DNHLRSIEEILS-FQHCRKLVTLRLWHNQIA 642

Query:   106 -----VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
                  V+ + ++ +L L HN++E L   L    GL  LDLSHN LR++ P+  +GL  + 
Sbjct:   643 YVPEHVRKLRSLEQLYLSHNKLETLPTQLGQCFGLRLLDLSHNGLRSLPPE--LGL--LQ 698

Query:   161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
             ++  L L +N +E+L   L   H L  L L +N L  +SPD    L +L  L++  N L 
Sbjct:   699 SLQHLALSYNALESLPDELFFCHKLRTLLLGYNHLTQLSPD-VAALQALSRLELKGNRLE 757

Query:   221 TLEE 224
             TL E
Sbjct:   758 TLPE 761

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q1KS52 ALS "Acid-labile subunit" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 57/170 (33%), Positives = 87/170 (51%)

Query:    66 LGLQ-IVNLKLTKNNLRPDGA-ALRPIDVCAPPSTLDNLKNQV-----QGVTNIFELKLQ 118
             LGLQ + +L L +N LR   A         A     +NL ++V     QG+TN+++L L 
Sbjct:   119 LGLQNLYHLHLERNQLRSLAAHTFLHTPGLASLGLHNNLLSRVEEGLFQGLTNLWDLNLG 178

Query:   119 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG 177
              N +  L D A  G+  L  L L+ NKL  + P  F GL  +    EL L  N + ++  
Sbjct:   179 WNSLAVLPDTAFHGLANLRELVLAGNKLTYLQPALFCGLGELR---ELDLSRNALRSVKA 235

Query:   178 -ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEET 225
                + +  L +L L HN L  ++P  F+G+ +L+ LD+SHN +   LE+T
Sbjct:   236 NVFVKLPKLQKLYLDHNLLAAVAPGAFLGMKALRWLDLSHNRVGGLLEDT 285

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PLN5 FMOD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 70/223 (31%), Positives = 106/223 (47%)

Query:    10 CKCRTSPISPIVVECEKMTSF-GQVVDALQDR-FGNDSISLKIAVSNLNDLPS-----KT 62
             C  R     P V    K   F    + ++Q+  F N +  L IA+   N + S     K 
Sbjct:    92 CDNRNLKYLPFVPSRMKYVYFQNNQISSIQEGVFDNATGLLWIALHG-NQITSDKVGRKI 150

Query:    63 FQELGLQIVNLKLTKNNL-RPDGAALRPI-DVCAPPSTLDNLKNQ-VQGVTNIFELKLQH 119
             F +L   +  L L  NNL R  G   R + ++    + +  + N  ++G+ N+  L LQH
Sbjct:   151 FSKLR-HLERLYLDHNNLTRMPGPLPRSLKELHLDHNQISRVPNNALEGLENLTALYLQH 209

Query:   120 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGA 178
             NEI+ +  A+ G+  L  LDLS+N LR + PD   GL S     +L L+HN + ++ D  
Sbjct:   210 NEIQEVGSAMRGLRSLILLDLSYNHLRKV-PD---GLPSALE--QLYLEHNNVYSVPDSY 263

Query:   179 LMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDISHNLL 219
               G   L  + LSHN L    ++ + F    SL  LD+S+N L
Sbjct:   264 FRGSPKLLYVRLSHNSLTNNGLASNTF-NSSSLLELDLSYNQL 305

GO:0005615 "extracellular space" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

MGI|MGI:2144814 Lrfn5 "leucine rich repeat and fibronectin type III domain containing 5" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 60/210 (28%), Positives = 105/210 (50%)

Query:     1 MRREINPCTCKCRTSPISP-IVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLP 59
             +R +I P  C C+   +SP +   C K       V    DR    ++ L++A + + ++ 
Sbjct:    15 VRAQICPKRCVCQI--LSPNLATLCAKKGLL--FVPPNIDR---RTVELRLADNFVTNIK 67

Query:    60 SKTFQELGLQIVNLKLTKNNLR---PDGAA-LRPIDVCAPPST-LDNLKNQV-QGVTNIF 113
              K F  +   +V+L L++N +    P   A LR +      S  L  + N +  G++N+ 
Sbjct:    68 RKDFANM-TSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLH 126

Query:   114 ELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
              L L +N++  +   A   +  L  LDLS+N L TI P D +  + + ++  L L HN I
Sbjct:   127 HLILNNNQLTLISSTAFDDVFALEELDLSYNNLETI-PWDAV--EKMVSLHTLSLDHNMI 183

Query:   173 ENLD-GALMGIHGLSRLDLSHNKLRTISPD 201
             +N+  G    +H ++RLD++ NKL+ + PD
Sbjct:   184 DNIPKGTFSHLHKMTRLDVTSNKLQKLPPD 213

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309357 Lrfn5 "leucine rich repeat and fibronectin type III domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 60/210 (28%), Positives = 105/210 (50%)

Query:     1 MRREINPCTCKCRTSPISP-IVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLP 59
             +R +I P  C C+   +SP +   C K       V    DR    ++ L++A + + ++ 
Sbjct:    15 VRAQICPKRCVCQI--LSPNLATLCAKKGLL--FVPPNIDR---RTVELRLADNFVTNIK 67

Query:    60 SKTFQELGLQIVNLKLTKNNLR---PDGAA-LRPIDVCAPPST-LDNLKNQV-QGVTNIF 113
              K F  +   +V+L L++N +    P   A LR +      S  L  + N +  G++N+ 
Sbjct:    68 RKDFANM-TSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLH 126

Query:   114 ELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
              L L +N++  +   A   +  L  LDLS+N L TI P D +  + + ++  L L HN I
Sbjct:   127 HLILNNNQLTLISSTAFDDVFALEELDLSYNNLETI-PWDAV--EKMVSLHTLSLDHNMI 183

Query:   173 ENLD-GALMGIHGLSRLDLSHNKLRTISPD 201
             +N+  G    +H ++RLD++ NKL+ + PD
Sbjct:   184 DNIPKGTFSHLHKMTRLDVTSNKLQKLPPD 213

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P35858 IGFALS "Insulin-like growth factor-binding protein complex acid labile subunit" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 59/184 (32%), Positives = 88/184 (47%)

Query:    48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRP--IDVCAPPSTLDNLKNQ 105
             L +  ++L  LP   F+ LG  +  L L  N L    A L+P      A    LD  +N 
Sbjct:   175 LNLGWNSLAVLPDAAFRGLG-SLRELVLAGNRL----AYLQPALFSGLAELRELDLSRNA 229

Query:   106 VQGV-TNIF-------ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
             ++ +  N+F       +L L  N I  +  GA +G+  L  LDLSHN++  +  D F GL
Sbjct:   230 LRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGL 289

Query:   157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
                  +  L+L HN I +L       +H L  L L HN++R ++   F GL  L++L + 
Sbjct:   290 ---LGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLD 346

Query:   216 HNLL 219
             HN L
Sbjct:   347 HNQL 350

GO:0007155 "cell adhesion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0005520 "insulin-like growth factor binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	227
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
            L L +N +  + DGA  G+  L  LDLS N L +ISP+ F GL SL+ LD+S N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L +N +  + DGA  G+  L  LDLS N L +ISP+ F GL S+     L L  N +
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR---SLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 108 GVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
           G   +  L L  N+    +   L  +  L +L LS NKL    PD+   L S   +  L 
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE---LSSCKKLVSLD 529

Query: 167 LQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
           L HN++   +  +   +  LS+LDLS N+L    P +   ++SL  ++ISHN L
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            L  LDLS+N+L  I    F GL +LK+LD+S N LT++   +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA 43

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHN 193
           L  LDLS N+     P     L S++ + +LKL  N++   +   L     L  LDLSHN
Sbjct: 477 LENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLT 220
           +L    P  F  +  L  LD+S N L+
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
           +    +  +  +  L L  N + +    L+ +  L+ LDL +N +  I P         +
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG---LLKS 140

Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           N+ EL L  N+IE+L   L  +  L  LDLS N L  + P     L +L  LD+S N ++
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS 199

Query: 221 TLEETSK 227
            L    +
Sbjct: 200 DLPPEIE 206

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
           N+ EL L  N+IE+L   L  +  L  LDLS N L  +       L +++N+  L L  N
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLSGN 196

Query: 171 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           +I +L   +  +  L  LDLS+N +  +       L +L  L++S+N L  L E+
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPES 250

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR 196
           L L +  LR   P+D   L  + +I    L  N I  N+  +L  I  L  LDLS+N   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI---NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 197 TISPDDFIGLDSLKMLDISHNLLT 220
              P+    L SL++L+++ N L+
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG4237|consensus	498		99.83
KOG4194|consensus	873		99.82
KOG4194|consensus	873		99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG0617|consensus	264		99.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
KOG0444|consensus	1255		99.65
KOG0472|consensus	565		99.61
KOG4237|consensus	498		99.58
KOG0472|consensus	565		99.56
KOG0444|consensus	1255		99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.44
KOG0618|consensus	1081		99.43
KOG0532|consensus	722		99.42
KOG0617|consensus	264		99.39
KOG0618|consensus	1081		99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG0532|consensus	722		99.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.07
KOG1259|consensus	490		99.07
KOG1259|consensus	490		99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.91
KOG3207|consensus	505		98.88
PLN03150	623	hypothetical protein; Provisional	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
KOG3207|consensus	505		98.78
KOG1859|consensus	1096		98.67
PLN03150	623	hypothetical protein; Provisional	98.56
KOG1909|consensus	382		98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG0531|consensus	414		98.37
KOG4579|consensus	177		98.31
KOG1909|consensus	382		98.29
KOG0531|consensus	414		98.29
KOG1644|consensus	233		98.28
KOG1644|consensus	233		98.25
KOG4579|consensus	177		98.21
KOG1859|consensus	1096		98.15
KOG4658|consensus	889		98.11
KOG2982|consensus	418		97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.66
KOG3665|consensus	699		97.64
KOG4658|consensus	889		97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.47
KOG3665|consensus	699		97.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.27
KOG2739|consensus	260		97.2
KOG2120|consensus	419		97.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
PRK15386	426	type III secretion protein GogB; Provisional	97.1
KOG2982|consensus	418		97.01
KOG2123|consensus	388		96.99
KOG2739|consensus	260		96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.48
KOG2120|consensus	419		96.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.72
KOG2123|consensus	388		95.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.27
smart00370	26	LRR Leucine-rich repeats, outliers.	95.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.62
smart00370	26	LRR Leucine-rich repeats, outliers.	93.62
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.06
KOG0473|consensus	326		91.06
KOG3864|consensus	221		89.13
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.07
KOG4308|consensus	478		84.91
KOG3864|consensus	221		84.82
KOG3763|consensus	585		84.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.55

>KOG4237|consensus

Probab=99.83  E-value=2.2e-21  Score=153.24  Aligned_cols=213  Identities=23%  Similarity=0.440  Sum_probs=145.4

Q ss_pred             CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253          5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      ++|.+|+|.++.  +..|.|..     +.+..+|..+++..+.+++..|.|+.+|+.+|+.++ +|+.||+++|.|+. .
T Consensus        36 ~CP~pC~Cs~~~--g~~VdCr~-----~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~-~LRrLdLS~N~Is~I~  107 (498)
T KOG4237|consen   36 ACPAPCTCSDVE--GGIVDCRG-----KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLH-RLRRLDLSKNNISFIA  107 (498)
T ss_pred             cCCCCcccCCCC--CceEEccC-----CCcccCcccCCCcceEEEeccCCcccCChhhccchh-hhceecccccchhhcC
Confidence            567779998543  67899988     778888999999999999999999999999999998 99999999999999 8


Q ss_pred             CCCC------------CCCCCCCCcc-hhhchhhhhc-----------------CCCcccEEEccCCCcccccc-cccCC
Q psy17253         84 GAAL------------RPIDVCAPPS-TLDNLKNQVQ-----------------GVTNIFELKLQHNEIENLDG-ALMGI  132 (227)
Q Consensus        84 ~~~~------------~~~~l~~~~~-~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~l~~-~~~~l  132 (227)
                      +.+|            .+|++..+|. .+.++.....                 .++++..|.+.+|.++.++. +|..+
T Consensus       108 p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l  187 (498)
T KOG4237|consen  108 PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL  187 (498)
T ss_pred             hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch
Confidence            8888            5588888886 3444433222                 47788888888887766543 55555


Q ss_pred             CCCCEEEcCCCcC-cc-----------cCCCCCCCCC-------------------------------------------
Q psy17253        133 HGLSRLDLSHNKL-RT-----------ISPDDFIGLD-------------------------------------------  157 (227)
Q Consensus       133 ~~L~~L~l~~n~l-~~-----------~~~~~~~~~~-------------------------------------------  157 (227)
                      .+++.+.+..|.+ ..           ..+-.+++..                                           
T Consensus       188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~  267 (498)
T KOG4237|consen  188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA  267 (498)
T ss_pred             hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence            5555555544441 00           0000000000                                           


Q ss_pred             ----CCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        158 ----SVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       158 ----~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                          .+++|+.+++++|+++.+. .++.+...++.|.+..|++..+...+|.++..|+.|+|.+|+++.+.++
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence                2445666666666666664 4556666666666666666666555666666666666666666665544

>KOG4194|consensus

Probab=99.82  E-value=4.6e-21  Score=158.17  Aligned_cols=175  Identities=26%  Similarity=0.445  Sum_probs=111.8

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhh
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKN  104 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~  104 (227)
                      .+.+.+.++....|+.  ++++|++++|.|+.+..+.|..+. +|..|.+++|+++. |..+|.                
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk----------------  218 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFK----------------  218 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcccccCHHHhh----------------
Confidence            3444555555555555  566666666666666666666665 66666666666665 555553                


Q ss_pred             hhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCC
Q psy17253        105 QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGI  182 (227)
Q Consensus       105 ~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~  182 (227)
                         ++++|+.|+|.+|+|..+ --.|.++++|+.|.+.+|.+..+..+.|.++.+   +++|+|..|+++.+- +++.++
T Consensus       219 ---~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k---me~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  219 ---RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK---MEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             ---hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc---cceeecccchhhhhhccccccc
Confidence               246677777777766655 335666666777767777766666666666665   666677777666554 555666


Q ss_pred             CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       183 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .+|+.|+++.|.|.++.++.+...++|+.|+|++|++++++++
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            6667777777776666666666666677777777776666654

>KOG4194|consensus

Probab=99.77  E-value=1.1e-18  Score=144.23  Aligned_cols=73  Identities=21%  Similarity=0.382  Sum_probs=53.9

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|...     -+.|.+..-..--..++++.++...+.|++++|.+..+....|..++ +|+++.+.+|.++. |.
T Consensus        46 cpa~c~c~~~-----lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~  119 (873)
T KOG4194|consen   46 CPATCPCNTR-----LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPR  119 (873)
T ss_pred             CCCcCCCCce-----eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhccc
Confidence            4555777644     57887731111112334666667899999999999999999999998 99999999999987 53

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=6.8e-17  Score=148.02  Aligned_cols=180  Identities=19%  Similarity=0.266  Sum_probs=111.1

Q ss_pred             ccchhhcccCCCCC--CccEEEeCCCCCC-CCChhhhhcccccccEEEccCCCCCC--CCCCC--------CCCCCC-CC
Q psy17253         30 FGQVVDALQDRFGN--DSISLKIAVSNLN-DLPSKTFQELGLQIVNLKLTKNNLRP--DGAAL--------RPIDVC-AP   95 (227)
Q Consensus        30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~--------~~~~l~-~~   95 (227)
                      .+.+...++..+..  +++.|++++|.+. .+|...|..+. +|+.|++++|.+.+  +...+        +.|.+. .+
T Consensus        78 ~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~  156 (968)
T PLN00113         78 GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI  156 (968)
T ss_pred             CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccC
Confidence            33444445555544  7999999999987 68888887887 99999999999876  32222        233332 22


Q ss_pred             cchhhchhhhhcCCCcccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-
Q psy17253         96 PSTLDNLKNQVQGVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-  173 (227)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-  173 (227)
                      |.       .+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+.+..+..+..+.+   |+.|++++|.+. 
T Consensus       157 p~-------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~  226 (968)
T PLN00113        157 PN-------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSG  226 (968)
T ss_pred             Ch-------HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC---ccEEECcCCccCC
Confidence            32       33445677777777776654 4666667777777777777666555544444433   666666666654 


Q ss_pred             CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       174 ~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .+|..+..+++|+.|++++|.+....|..++.+++|+.|++++|.+.
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            34555555566666666666555444555555555555555555543

>KOG0617|consensus

Probab=99.68  E-value=5.5e-19  Score=125.60  Aligned_cols=156  Identities=24%  Similarity=0.340  Sum_probs=136.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|.+++|.++.+|++ +..+. +|+.|++.+|++.+ |..+-                    .++.|+.|+++-|++
T Consensus        34 ~ITrLtLSHNKl~~vppn-ia~l~-nlevln~~nnqie~lp~~is--------------------sl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVVPPN-IAELK-NLEVLNLSNNQIEELPTSIS--------------------SLPKLRILNVGMNRL   91 (264)
T ss_pred             hhhhhhcccCceeecCCc-HHHhh-hhhhhhcccchhhhcChhhh--------------------hchhhhheecchhhh
Confidence            789999999999999987 56676 89999999999876 44332                    257899999999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTI-SPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      ..+|..|+.++.|++||++.|++..- .|+.|..+..   |+.|++++|.+..+|+.++.+++|++|.+++|.+-.. |.
T Consensus        92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---lralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pk  167 (264)
T KOG0617|consen   92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---LRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PK  167 (264)
T ss_pred             hcCccccCCCchhhhhhccccccccccCCcchhHHHH---HHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cH
Confidence            99999999999999999999988653 3566666666   9999999999999999999999999999999998877 77


Q ss_pred             ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .++.+..|+.|.+++|.++-+|++
T Consensus       168 eig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChh
Confidence            889999999999999999999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=1.3e-15  Score=139.61  Aligned_cols=108  Identities=25%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             CCCcccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCC
Q psy17253        108 GVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGL  185 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L  185 (227)
                      .+++|+.|++++|.++. +|..+..+++|+.|++++|.+.+..+..+..+++   |+.|++++|.+. .+|..+..+.+|
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN---LQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC---CCEEECcCCeeeccCchhHhhccCc
Confidence            34455555555555443 3444555555555555555544433333333332   444444444433 223333334444


Q ss_pred             CEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253        186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  218 (227)
                      +.|++++|.+....|..+..+++|+.|++++|.
T Consensus       287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             CEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            444444444433333333333334444443333

>KOG0444|consensus

Probab=99.65  E-value=6.7e-18  Score=141.09  Aligned_cols=192  Identities=26%  Similarity=0.372  Sum_probs=130.2

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCC---
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPID---   91 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~---   91 (227)
                      .|.+++.+.+ ..+..  +.-.|++++|+|..||...|.++. .|-.||+++|++.. |+..-          +.|.   
T Consensus       110 LShNqL~EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  110 LSHNQLREVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             cchhhhhhcc-hhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence            3445554433 22222  566778888888888887777776 77777777777765 43211          1111   


Q ss_pred             --CCCCc--------------chhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253         92 --VCAPP--------------STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG  155 (227)
Q Consensus        92 --l~~~~--------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  155 (227)
                        +..+|              ..+.+++..+.++.+|..++++.|.+..+|.++..+++|+.|+|++|.|+.+.. ....
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~  266 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGE  266 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cHHH
Confidence              11122              233444555556789999999999999999999999999999999999988754 3344


Q ss_pred             CCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCcccc--C----------------------CccccCCCCCCCE
Q psy17253        156 LDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT--I----------------------SPDDFIGLDSLKM  211 (227)
Q Consensus       156 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~--~----------------------~~~~~~~~~~L~~  211 (227)
                      +.+   |+.|++++|+++.+|..++.+++|+.|.+.+|+++-  +                      -|+.++.+..|+.
T Consensus       267 W~~---lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  267 WEN---LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK  343 (1255)
T ss_pred             Hhh---hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence            555   888999999998888888888888888888777642  2                      1334445555666


Q ss_pred             EEcCCCcCcccCCC
Q psy17253        212 LDISHNLLTTLEET  225 (227)
Q Consensus       212 L~l~~n~l~~lp~~  225 (227)
                      |.|+.|.+-++|++
T Consensus       344 L~L~~NrLiTLPea  357 (1255)
T KOG0444|consen  344 LKLDHNRLITLPEA  357 (1255)
T ss_pred             hcccccceeechhh
Confidence            66666666666654

>KOG0472|consensus

Probab=99.61  E-value=1.7e-17  Score=131.91  Aligned_cols=111  Identities=34%  Similarity=0.481  Sum_probs=86.1

Q ss_pred             CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCE
Q psy17253        109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSR  187 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~  187 (227)
                      ++.|+.++...|-++.+|+.++.+.+|..|++.+|++..++  .|.++..   |.+++++.|++..+|. ....+.++.+
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~---L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSL---LKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHH---HHHHHhcccHHHhhHHHHhccccccee
Confidence            56788888888888888888889999999999999988776  5555555   7777788887777773 3457777778


Q ss_pred             EeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      ||+++|++++. |+.+.-+++|+.||+++|.++++|..
T Consensus       257 LDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  257 LDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             eeccccccccC-chHHHHhhhhhhhcccCCccccCCcc
Confidence            88888888777 66667777777888888888777764

>KOG4237|consensus

Probab=99.58  E-value=3.5e-16  Score=124.06  Aligned_cols=196  Identities=24%  Similarity=0.399  Sum_probs=143.8

Q ss_pred             CCCceEEEecCCCCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEE-ccCCCCCC-CCCCC----
Q psy17253         16 PISPIVVECEKMTSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLK-LTKNNLRP-DGAAL----   87 (227)
Q Consensus        16 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~-l~~n~~~~-~~~~~----   87 (227)
                      +.+.++++-+.    +.+..+++..|..  +++.||+++|.|+.|.+++|.++. ++..|- +++|+|+. +...|    
T Consensus        66 P~~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   66 PPETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CCcceEEEecc----CCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHH
Confidence            33444555544    5888888888888  999999999999999999999998 766654 55599999 88888    


Q ss_pred             -------CCCCCCCCcc-hhhchhhh-----------------hcCCCcccEEEccCCC---------------------
Q psy17253         88 -------RPIDVCAPPS-TLDNLKNQ-----------------VQGVTNIFELKLQHNE---------------------  121 (227)
Q Consensus        88 -------~~~~l~~~~~-~~~~~~~~-----------------~~~l~~L~~L~l~~n~---------------------  121 (227)
                             ..+.+..++. .+..++..                 +.++..++.+.+..|.                     
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence                   1111111111 11111111                 1112222222222111                     


Q ss_pred             ----------------------------------------cccc-c-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCC
Q psy17253        122 ----------------------------------------IENL-D-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV  159 (227)
Q Consensus       122 ----------------------------------------l~~l-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  159 (227)
                                                              +..+ | ..|..+++|+.|++++|+++.+...+|++... 
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~-  299 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE-  299 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh-
Confidence                                                    1111 2 35778999999999999999999999998888 


Q ss_pred             CcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253        160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       160 ~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  219 (227)
                        +++|.|.+|++..+. +.+.++..|++|++.+|+|+.+.+.+|..+.+|..|.+-+|++
T Consensus       300 --l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  300 --LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             --hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence              999999999999886 5678999999999999999999999999999999999999876

>KOG0472|consensus

Probab=99.56  E-value=6.8e-16  Score=122.88  Aligned_cols=168  Identities=22%  Similarity=0.355  Sum_probs=139.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccc-cccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGL-QIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVT  110 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~  110 (227)
                      ..+.|++++-.++.+|.++|...+. -+..++++.|++.+ |...-           +.+.+..+|..+..+       +
T Consensus       363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-------~  435 (565)
T KOG0472|consen  363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL-------Q  435 (565)
T ss_pred             hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-------h
Confidence            7889999999999999999987651 27789999999998 65433           666677777766655       7


Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEe
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLD  189 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~  189 (227)
                      ++..|++++|-+..+|..++.+..||.++++.|++...+ ..+..+..   ++.+-.+.|++..++ ..+..+.+|++||
T Consensus       436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP-~~~y~lq~---lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLP-ECLYELQT---LETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             cceeeecccchhhhcchhhhhhhhhheecccccccccch-HHHhhHHH---HHHHHhccccccccChHHhhhhhhcceec
Confidence            899999999999999999999999999999999886654 33333333   666667779999997 4589999999999


Q ss_pred             CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +.+|.+..+ |..++.|.+|++|++.||+|+ .|.
T Consensus       512 L~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  512 LQNNDLQQI-PPILGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             cCCCchhhC-ChhhccccceeEEEecCCccC-CCH
Confidence            999999999 668999999999999999999 554

>KOG0444|consensus

Probab=99.55  E-value=4.6e-16  Score=130.25  Aligned_cols=173  Identities=26%  Similarity=0.371  Sum_probs=109.8

Q ss_pred             CccEEEeCCCCCC--CCChhhhhcccccccEEEccCCCCCC-CCCC----------CCCCCCCCCcchhhchhhhhcCCC
Q psy17253         44 DSISLKIAVSNLN--DLPSKTFQELGLQIVNLKLTKNNLRP-DGAA----------LRPIDVCAPPSTLDNLKNQVQGVT  110 (227)
Q Consensus        44 ~l~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~----------~~~~~l~~~~~~~~~~~~~~~~l~  110 (227)
                      .++.+.++.|++.  .+|.+.|. +. .|.+||+++|++++ |...          ++.|.+..+|.++.      ..+.
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~-l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf------inLt  150 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFR-LK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF------INLT  150 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcc-cc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH------HhhH
Confidence            4667777777765  56666553 44 57777777777776 4321          15555666665332      2356


Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCC----------------------CCcccEEEcC
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS----------------------VTNIFELKLQ  168 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~----------------------~~~L~~l~l~  168 (227)
                      .|-.|+|++|+++.+|+.+..+.+|++|.|++|.+.......+..++.                      +.+|..++++
T Consensus       151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            777888888888888877777778888888887654322111111111                      2246666777


Q ss_pred             CCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       169 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .|.+..+|+-+..+.+|+.|++++|+|+.+. -..+.+.++++|+++.|+++.+|..
T Consensus       231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~LP~a  286 (1255)
T KOG0444|consen  231 ENNLPIVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVLPDA  286 (1255)
T ss_pred             ccCCCcchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccchHH
Confidence            7777777766667777777777777777652 2345566777777777777777753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=4.6e-14  Score=124.26  Aligned_cols=168  Identities=25%  Similarity=0.333  Sum_probs=104.5

Q ss_pred             ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhc
Q psy17253         37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQ  107 (227)
Q Consensus        37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~  107 (227)
                      +|...+..++.|++++|.++.+|...+   . +|+.|++++|.++. |....        +.|.+..+|..+.       
T Consensus       193 LP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~-nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~-------  261 (754)
T PRK15370        193 IPACIPEQITTLILDNNELKSLPENLQ---G-NIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP-------  261 (754)
T ss_pred             CCcccccCCcEEEecCCCCCcCChhhc---c-CCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh-------
Confidence            344455578889999999888887544   3 78888888888887 54322        4555555554331       


Q ss_pred             CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCC-------------CCCC--CCCcccEEEcCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF-------------IGLD--SVTNIFELKLQHNEI  172 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~~~--~~~~L~~l~l~~n~~  172 (227)
                        .+|+.|++++|.++.+|..+.  .+|+.|++++|.++.++....             ..++  -.++|+.|++++|.+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL  337 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence              357777777777776666443  367777777776665432110             0000  013466666666666


Q ss_pred             cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +.+|..+.  ++|+.|++++|+++.+ |..+  .+.|+.|++++|.++.+|+
T Consensus       338 t~LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        338 TSLPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPE  384 (754)
T ss_pred             ccCChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCH
Confidence            66664332  5677777777777765 3222  2467777777777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=1.2e-13  Score=121.63  Aligned_cols=160  Identities=21%  Similarity=0.295  Sum_probs=100.2

Q ss_pred             CCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253         41 FGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTN  111 (227)
Q Consensus        41 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~  111 (227)
                      +..+|+.|++++|.++.+|....   . +|+.|++++|.+.. |....        ++|.+..+|..+.         .+
T Consensus       218 l~~nL~~L~Ls~N~LtsLP~~l~---~-~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~---------~s  284 (754)
T PRK15370        218 LQGNIKTLYANSNQLTSIPATLP---D-TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLP---------EE  284 (754)
T ss_pred             hccCCCEEECCCCccccCChhhh---c-cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccC---------CC
Confidence            33468888888888887775422   2 57777777777766 43222        3444444443221         24


Q ss_pred             ccEEEccCCCccccccccc-------------------CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253        112 IFELKLQHNEIENLDGALM-------------------GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus       112 L~~L~l~~n~l~~l~~~~~-------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                      |+.|++++|+++.+|..+.                   ..++|+.|++++|.++.++. .+     .++|+.|++++|++
T Consensus       285 L~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~-~l-----~~sL~~L~Ls~N~L  358 (754)
T PRK15370        285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-SL-----PPELQVLDVSKNQI  358 (754)
T ss_pred             CcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-hh-----cCcccEEECCCCCC
Confidence            5555666555554433221                   11467777777777766542 22     13588999999999


Q ss_pred             cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +.+|..+.  .+|+.|++++|+++.+++. +.  ..|+.|++++|.++++|.
T Consensus       359 ~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        359 TVLPETLP--PTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPE  405 (754)
T ss_pred             CcCChhhc--CCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCch
Confidence            88886542  5788999999998877433 22  257777888888887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=2.2e-12  Score=113.51  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253         37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      +|..++.+++.|++.+|.++.+|..    .+ +|+.|++++|.++.
T Consensus       216 LP~~l~~~L~~L~L~~N~Lt~LP~l----p~-~Lk~LdLs~N~Lts  256 (788)
T PRK15387        216 LPDCLPAHITTLVIPDNNLTSLPAL----PP-ELRTLEVSGNQLTS  256 (788)
T ss_pred             CCcchhcCCCEEEccCCcCCCCCCC----CC-CCcEEEecCCccCc
Confidence            4445555677777777777777642    23 77777777777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.44  E-value=7.7e-13  Score=116.34  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=62.5

Q ss_pred             CcccEEEccCCCcccccccccC-----------------CCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253        110 TNIFELKLQHNEIENLDGALMG-----------------IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                      .+|+.|++++|+++.+|.....                 ..+|+.|++++|.+..++..       .++|+.|++++|++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l-------~s~L~~LdLS~N~L  414 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL-------PSELKELMVSGNRL  414 (788)
T ss_pred             cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc-------ccCCCEEEccCCcC
Confidence            3677777777777766532111                 02345555555555443321       12366667777766


Q ss_pred             cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      +.+|...   .+|+.|++++|+++.+ |..+..++.++.|++++|++++.
T Consensus       415 ssIP~l~---~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        415 TSLPMLP---SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCCcch---hhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCch
Confidence            6665422   3466777777777776 56677788888888888888654

>KOG0618|consensus

Probab=99.43  E-value=5.7e-15  Score=127.91  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=40.0

Q ss_pred             chhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253         32 QVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL   87 (227)
Q Consensus        32 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~   87 (227)
                      -+........+.+++++++++|.+..+| +.+.... +|+.+...+|++.. +...+
T Consensus       230 ~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~-nle~l~~n~N~l~~lp~ri~  284 (1081)
T KOG0618|consen  230 PLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACA-NLEALNANHNRLVALPLRIS  284 (1081)
T ss_pred             cceeeccccccccceeeecchhhhhcch-HHHHhcc-cceEecccchhHHhhHHHHh
Confidence            3333333434448999999999999999 6677776 89999999999877 66555

>KOG0532|consensus

Probab=99.42  E-value=1e-14  Score=120.69  Aligned_cols=166  Identities=23%  Similarity=0.377  Sum_probs=134.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI  112 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L  112 (227)
                      ....+|++.|++..+|.++ ..+. .|+.+.+++|++.. +..+.          +.|++..+|..++.++        |
T Consensus        76 dt~~aDlsrNR~~elp~~~-~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--------L  145 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEA-CAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--------L  145 (722)
T ss_pred             chhhhhccccccccCchHH-HHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc--------c
Confidence            5667888888888888763 3444 67788888888877 44322          6777778888877775        8


Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      +.|.+++|+++.+|..++.+..|..|+.+.|.+..++.. +.++.   +|+.+++.+|++..+|+.+..+ .|..||++.
T Consensus       146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~---slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLT---SLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             eeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHH---HHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence            999999999999988888778899999999999887653 34444   4899999999999998767644 488999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      |++..+ |-.|.+|+.|+.|-|.+|++++.|.+
T Consensus       221 Nkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  221 NKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             Cceeec-chhhhhhhhheeeeeccCCCCCChHH
Confidence            999999 78899999999999999999998864

>KOG0617|consensus

Probab=99.39  E-value=1.5e-14  Score=103.20  Aligned_cols=136  Identities=25%  Similarity=0.378  Sum_probs=113.1

Q ss_pred             hcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCC
Q psy17253         64 QELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  142 (227)
Q Consensus        64 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~  142 (227)
                      ..+. .++.|.+++|+++- ++.+             .       .+.+|+.|++.+|+|+++|..+..++.|+.|+++.
T Consensus        30 f~~s-~ITrLtLSHNKl~~vppni-------------a-------~l~nlevln~~nnqie~lp~~issl~klr~lnvgm   88 (264)
T KOG0617|consen   30 FNMS-NITRLTLSHNKLTVVPPNI-------------A-------ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM   88 (264)
T ss_pred             cchh-hhhhhhcccCceeecCCcH-------------H-------HhhhhhhhhcccchhhhcChhhhhchhhhheecch
Confidence            3444 67788899998875 4433             2       25789999999999999999999999999999999


Q ss_pred             CcCcccCCCCCCCCCCCCcccEEEcCCCCCc--CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       143 n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      |++.-.+. .|+.++.   |+.|++.+|++.  .+|+.+..+..|+.|.+++|-+..+ |..++.+++|+.|.+..|.+-
T Consensus        89 nrl~~lpr-gfgs~p~---levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   89 NRLNILPR-GFGSFPA---LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hhhhcCcc-ccCCCch---hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchh
Confidence            99876654 4555554   999999999987  5788888899999999999999877 667899999999999999998


Q ss_pred             ccCCC
Q psy17253        221 TLEET  225 (227)
Q Consensus       221 ~lp~~  225 (227)
                      ++|.+
T Consensus       164 ~lpke  168 (264)
T KOG0617|consen  164 SLPKE  168 (264)
T ss_pred             hCcHH
Confidence            88854

>KOG0618|consensus

Probab=99.35  E-value=6.4e-14  Score=121.54  Aligned_cols=106  Identities=28%  Similarity=0.401  Sum_probs=71.4

Q ss_pred             CCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS  186 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~  186 (227)
                      ++.+|+.|+|++|++..+|+ .+..+..|+.|+|++|+++.++ .++..+..   |+.|....|++..+| .+..++.|+
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~---L~tL~ahsN~l~~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGR---LHTLRAHSNQLLSFP-ELAQLPQLK  455 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhh---hHHHhhcCCceeech-hhhhcCcce
Confidence            56677777777777776654 4456666777777777776665 34444444   666667777776666 355667788


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  218 (227)
                      .+|++.|.++..........+.|++||++||.
T Consensus       456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             EEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            88888888877643333334788888888886

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=1.2e-12  Score=95.58  Aligned_cols=123  Identities=22%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             CccEEEeCCCCCCCCChhhhh-cccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      ++++|++++|.|+.+..  +. .+. +|+.|++++|.++.                ++++    ..++.|+.|++++|+|
T Consensus        20 ~~~~L~L~~n~I~~Ie~--L~~~l~-~L~~L~Ls~N~I~~----------------l~~l----~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN--LGATLD-KLEVLDLSNNQITK----------------LEGL----PGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ----------------S----TT-T-T--EEE-TTS--S------------------TT--------TT--EEE--SS--
T ss_pred             ccccccccccccccccc--hhhhhc-CCCEEECCCCCCcc----------------ccCc----cChhhhhhcccCCCCC
Confidence            67888888888887754  33 344 78888888888774                1111    1256788888888888


Q ss_pred             ccccccc-cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCEEeCC
Q psy17253        123 ENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLS  191 (227)
Q Consensus       123 ~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~  191 (227)
                      +.+...+ ..+++|+.|.+++|+|..+.  .+..+..+++|+.|++.+|.+...+.    .+..+++|+.||-.
T Consensus        77 ~~i~~~l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   77 SSISEGLDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -S-CHHHHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CccccchHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8775444 35778888888888876653  34445556668888888887764442    23566777777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=1.9e-11  Score=89.41  Aligned_cols=107  Identities=26%  Similarity=0.430  Sum_probs=43.0

Q ss_pred             CcccEEEccCCCccccccccc-CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh-cCCCCCCE
Q psy17253        110 TNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL-MGIHGLSR  187 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~L~~  187 (227)
                      ..++.|+|.+|.|+.+.. +. .+.+|+.|++++|.|+.+.  .   +..++.|+.|++++|.++.+.+.+ ..+++|+.
T Consensus        19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~---l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--G---LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS--S--T--T-------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--C---ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            457889999999988754 44 5788999999999998764  2   344555999999999999886544 46789999


Q ss_pred             EeCCCCccccCC-ccccCCCCCCCEEEcCCCcCccc
Q psy17253        188 LDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       188 l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      |++++|+|..+. -..+..+++|+.|++.+|+++.-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            999999998764 24677889999999999998754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=4.4e-11  Score=96.44  Aligned_cols=176  Identities=23%  Similarity=0.244  Sum_probs=94.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhccccc---ccEEEccCCCCCC-CCC-----------CC-----CCCCCCCCcchhhchh
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQ---IVNLKLTKNNLRP-DGA-----------AL-----RPIDVCAPPSTLDNLK  103 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~---L~~L~l~~n~~~~-~~~-----------~~-----~~~~l~~~~~~~~~~~  103 (227)
                      +++.|++++|.+.......+..+. .   |+.|++++|++.. ...           .+     ..+.+..  .....+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~  158 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--ASCEALA  158 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHh-ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc--hHHHHHH
Confidence            688888888888765555565554 4   8888888887762 110           00     1111110  1112223


Q ss_pred             hhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCch-
Q psy17253        104 NQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENLD-  176 (227)
Q Consensus       104 ~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~-  176 (227)
                      ..+.++++|+.|++++|.++.     ++..+..+++|+.|++++|.+.......+. ....+++|+.|++++|.++... 
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            333445566677776666652     233344455677777777666533221111 1223344777777777665321 


Q ss_pred             hhh-c----CCCCCCEEeCCCCccccCC----ccccCCCCCCCEEEcCCCcCccc
Q psy17253        177 GAL-M----GIHGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       177 ~~~-~----~~~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      ..+ .    ....|+.+++++|.++...    ...+..++.|+.+++++|.+..-
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            111 1    1356777777777665211    22344456677777777776643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=99.11  E-value=4.6e-12  Score=105.19  Aligned_cols=166  Identities=25%  Similarity=0.333  Sum_probs=134.7

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccc-cccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGL-QIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI  112 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L  112 (227)
                      ...|.+++-.+..+|..++. +.. .....|++.|++.+ |.+.-          ..|.++.+|..+..+       ..|
T Consensus        52 sg~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L-------~~l  123 (722)
T KOG0532|consen   52 SGRLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNL-------EAL  123 (722)
T ss_pred             hcccccccchhhcCCCcccc-ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhh-------hHH
Confidence            45678888889999888776 432 34457999999998 54322          667788888777766       779


Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      ++++++.|+++.+|..+..++ |+.|-+++|+++.++. .++....   |..++++.|.+..+|.-++++.+|+.|.++.
T Consensus       124 t~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~-~ig~~~t---l~~ld~s~nei~slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  124 TFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE-EIGLLPT---LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             HHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc-ccccchh---HHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence            999999999999998887775 8899999999988765 3444444   8999999999999998899999999999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      |++..+ |..+..++ |..||++.|++.+||-.
T Consensus       199 n~l~~l-p~El~~Lp-Li~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  199 NHLEDL-PEELCSLP-LIRLDFSCNKISYLPVD  229 (722)
T ss_pred             hhhhhC-CHHHhCCc-eeeeecccCceeecchh
Confidence            999998 55566554 88999999999999965

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.07  E-value=1.2e-10  Score=93.79  Aligned_cols=173  Identities=23%  Similarity=0.316  Sum_probs=109.6

Q ss_pred             CccEEEeCCCCCCCCCh----hhhhcc-cccccEEEccCCCCCC-CCC----CC-----------CCCCCCCCcchhhch
Q psy17253         44 DSISLKIAVSNLNDLPS----KTFQEL-GLQIVNLKLTKNNLRP-DGA----AL-----------RPIDVCAPPSTLDNL  102 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~----~~~~~~-~~~L~~L~l~~n~~~~-~~~----~~-----------~~~~l~~~~~~~~~~  102 (227)
                      ++++|++++|.+.....    ..+... + .|+.|++++|.+.. ...    .+           ..+.+..  ..+..+
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l  185 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--AGIRAL  185 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch--HHHHHH
Confidence            37788888887763221    223344 4 67888888887773 110    11           1111111  122223


Q ss_pred             hhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-C-CCCCcccEEEcCCCCCcC-
Q psy17253        103 KNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-L-DSVTNIFELKLQHNEIEN-  174 (227)
Q Consensus       103 ~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~-~~~~~L~~l~l~~n~~~~-  174 (227)
                      ...+...++|+.|++++|.++.     +...+..+++|+.|++++|.+.......+.. + ...+.|+.|++++|.++. 
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~  265 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD  265 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence            3334456799999999999874     3455677899999999999887532222211 1 012459999999999862 


Q ss_pred             ----chhhhcCCCCCCEEeCCCCccccCC----ccccCCC-CCCCEEEcCCCcC
Q psy17253        175 ----LDGALMGIHGLSRLDLSHNKLRTIS----PDDFIGL-DSLKMLDISHNLL  219 (227)
Q Consensus       175 ----~~~~~~~~~~L~~l~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~n~l  219 (227)
                          +...+..+++|+.+++++|.++...    ...+... +.++.+++..|++
T Consensus       266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         266 GAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                2344566689999999999998653    2334444 6788999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259|consensus

Probab=99.07  E-value=1.7e-11  Score=94.98  Aligned_cols=108  Identities=31%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEe
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD  189 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~  189 (227)
                      +.++.|++++|.|..+.. +..+++|+.||+++|.++.+.. .   -.++.+++.|.++.|.+..+.+ +..+-+|..||
T Consensus       307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G-w---h~KLGNIKtL~La~N~iE~LSG-L~KLYSLvnLD  380 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVG-W---HLKLGNIKTLKLAQNKIETLSG-LRKLYSLVNLD  380 (490)
T ss_pred             cceeEEeccccceeeehh-hhhcccceEeecccchhHhhhh-h---HhhhcCEeeeehhhhhHhhhhh-hHhhhhheecc
Confidence            455566666665555433 4555556666666665544321 1   1122235555566655544422 33444455556


Q ss_pred             CCCCccccCCc-cccCCCCCCCEEEcCCCcCcccC
Q psy17253        190 LSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       190 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +++|+|..++. ..++.++.|+++.+.+|++..+|
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            66665554431 23455556666666666655554

>KOG1259|consensus

Probab=99.05  E-value=6.7e-11  Score=91.70  Aligned_cols=108  Identities=31%  Similarity=0.396  Sum_probs=92.3

Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEe
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD  189 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~  189 (227)
                      ..|+.++|++|.|+.+..++.-.+.++.|+++.|.+..+..  ++.+.   +|+.|++++|.+.++.++-..+.++++|.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~---~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELP---QLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcc---cceEeecccchhHhhhhhHhhhcCEeeee
Confidence            56899999999999998888888999999999999987642  44444   49999999999999988777888999999


Q ss_pred             CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +++|.+...  +.+..+-+|..||+.+|++..+.+
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence            999999776  456778889999999999876654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.7e-10  Score=95.92  Aligned_cols=167  Identities=26%  Similarity=0.380  Sum_probs=106.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI  112 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L  112 (227)
                      .++.|++.++.+.+++......-. +|+.|++++|.+.. +....          ..+.+..+|..       .+..+.+
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-------~~~~~~L  188 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-------LSNLSNL  188 (394)
T ss_pred             ceeEEecCCcccccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-------hhhhhhh
Confidence            466677777777776653221101 56777777777665 32211          22222222221       1134677


Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      +.|++++|.++.+|........|+.+.+++|.+.... ..+.   ++..+..+.+..|++..++..+..+..++.|++++
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-~~~~---~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-SSLS---NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-hhhh---hcccccccccCCceeeeccchhccccccceecccc
Confidence            7788888887777775545556777777777533222 1222   33346777788888777666677788899999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      |.++.+..  ++.+..++.|++++|.+..+++
T Consensus       265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         265 NQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccccc--ccccCccCEEeccCccccccch
Confidence            99999854  8888999999999998876654

>PLN03210 Resistant to P

Probab=99.03  E-value=4e-09  Score=98.48  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=19.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN   79 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~   79 (227)
                      +++.|+++++.+..++.. +..++ +|+.|+++++.
T Consensus       612 ~L~~L~L~~s~l~~L~~~-~~~l~-~Lk~L~Ls~~~  645 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDG-VHSLT-GLRNIDLRGSK  645 (1153)
T ss_pred             CCcEEECcCccccccccc-cccCC-CCCEEECCCCC
Confidence            566666666666555543 34444 56666666543

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.8e-10  Score=68.82  Aligned_cols=59  Identities=37%  Similarity=0.623  Sum_probs=46.0

Q ss_pred             cccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253        161 NIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       161 ~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  219 (227)
                      +|+.|++++|+++.+| ..+..+++|++|++++|+++.+.+.+|.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4777788888777776 4667778888888888888887777888888888888888764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=9.9e-10  Score=66.42  Aligned_cols=60  Identities=32%  Similarity=0.547  Sum_probs=45.6

Q ss_pred             CcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253        110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                      ++|+.|++++|+++.+| ..|..+++|++|++++|.++.++++.|.++++   |+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~---L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN---LRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT---ESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC---CCEEeCcCCcC
Confidence            35778888888888875 46777888888888888888877777766666   77888887764

...

>PLN03210 Resistant to P

Probab=98.91  E-value=2.1e-08  Score=93.69  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             CCcccEEEccCCC-cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCC-CCcCchhhhcCCCCCC
Q psy17253        109 VTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENLDGALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~  186 (227)
                      +++|+.|+++++. +..+|. +..+++|+.|++.+|......+..+..+.+   |+.|++++| .++.+|..+ .+.+|+
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~---L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK---LEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC---CCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            4566666666543 344443 555566666666655422222333333333   666666654 355555433 455666


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .|++++|......|..   ..+|+.|++++|.+..+|.
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence            6666665422211221   2456667777777766664

syringae 6; Provisional

>KOG3207|consensus

Probab=98.88  E-value=6.6e-10  Score=89.87  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CccEEEeCCCCCCCC--ChhhhhcccccccEEEccCCCCCC
Q psy17253         44 DSISLKIAVSNLNDL--PSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~--~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      +++.||++.|-+..+  -......++ +|+.|+++.|++..
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSN  186 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccC
Confidence            466677777765543  222334454 67777777776654

>PLN03150 hypothetical protein; Provisional

Probab=98.88  E-value=8.3e-09  Score=90.44  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=90.3

Q ss_pred             cccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEE
Q psy17253        111 NIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRL  188 (227)
Q Consensus       111 ~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l  188 (227)
                      .++.|+|++|.+++ +|..+..+++|+.|+|++|.+.+..+..+..+..   |+.|++++|+++ .+|..+..+++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~---L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS---LEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCC---CCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            37889999999986 6888999999999999999998777766666655   999999999988 678888999999999


Q ss_pred             eCCCCccccCCccccCCC-CCCCEEEcCCCc-CcccC
Q psy17253        189 DLSHNKLRTISPDDFIGL-DSLKMLDISHNL-LTTLE  223 (227)
Q Consensus       189 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~-l~~lp  223 (227)
                      ++++|+++...|..++.. .++..+++.+|. +...|
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999987767766653 456788888886 44443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=3e-09  Score=88.50  Aligned_cols=171  Identities=28%  Similarity=0.425  Sum_probs=100.5

Q ss_pred             EEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc---hhhchhhhhcCCCcccEEEccCCC
Q psy17253         47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS---TLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        47 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~---~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      .++...+.+..-... ..... .+..|++.+|.+.. ++...... .+..+..   .+..++..+..+++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchh-hhccc-ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            466677766332222 33344 79999999999988 55443221 2222222   122222223445666666666666


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      +..+|......+.|+.|++++|.+..++.. .....   .|+.+.+++|.+...+..+..+.++..+.+.+|++..+ +.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~---~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLS---ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCccccCchh-hhhhh---hhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cc
Confidence            666655444556666666666666655432 11111   25666666665444444455556666666777766654 45


Q ss_pred             ccCCCCCCCEEEcCCCcCcccCC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .++.++.++.|++++|.+++++.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             hhccccccceecccccccccccc
Confidence            67778889999999999998875

>KOG3207|consensus

Probab=98.78  E-value=1.1e-09  Score=88.53  Aligned_cols=162  Identities=20%  Similarity=0.266  Sum_probs=96.6

Q ss_pred             CccEEEeCCCCCCCCCh-hhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPS-KTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +|+.+.+.++.+...+. .....++ .++.||+++|-+.                .+....++..++++|+.|+++.|.+
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~-~v~~LdLS~NL~~----------------nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILP-NVRDLDLSRNLFH----------------NWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCC-cceeecchhhhHH----------------hHHHHHHHHHhcccchhcccccccc
Confidence            46666777766665543 3344454 7777777777765                3334444555666777777776665


Q ss_pred             ccc---------------------------cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc
Q psy17253        123 ENL---------------------------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL  175 (227)
Q Consensus       123 ~~l---------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  175 (227)
                      ...                           .-....+++|+.|.+..|............   +..|+.|+|++|++...
T Consensus       185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  185 SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDF  261 (505)
T ss_pred             cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCccccc
Confidence            432                           111223445555555555311111111111   23477888888887766


Q ss_pred             h--hhhcCCCCCCEEeCCCCccccCC-ccc-----cCCCCCCCEEEcCCCcCcccCCC
Q psy17253        176 D--GALMGIHGLSRLDLSHNKLRTIS-PDD-----FIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       176 ~--~~~~~~~~L~~l~l~~n~l~~~~-~~~-----~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +  ...+.++.|..|+++.+.+.++. ++.     ....++|+.|++..|+++.++..
T Consensus       262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl  319 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL  319 (505)
T ss_pred             ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence            6  34467788888888888887653 222     34568899999999998877653

>KOG1859|consensus

Probab=98.67  E-value=3.5e-10  Score=96.80  Aligned_cols=119  Identities=30%  Similarity=0.369  Sum_probs=68.7

Q ss_pred             CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEc
Q psy17253         88 RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL  167 (227)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l  167 (227)
                      ++|.+..++.++..+       +.++.|+|++|+++.+. .+..++.|+.|||+.|.+..++.-...++.    |..|++
T Consensus       172 syN~L~~mD~SLqll-------~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~----L~~L~l  239 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQLL-------PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK----LQLLNL  239 (1096)
T ss_pred             chhhHHhHHHHHHHH-------HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh----heeeee
Confidence            455544444444433       56777777777766655 456666777777777776665432222221    666667


Q ss_pred             CCCCCcCchhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcC
Q psy17253        168 QHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       168 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l  219 (227)
                      .+|.++.+.+ +..+.+|+.||++.|-+.+.. ...+..+..|+.|.|.||++
T Consensus       240 rnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7776665533 455666677777777655432 12344455566667777665

>PLN03150 hypothetical protein; Provisional

Probab=98.56  E-value=1.3e-07  Score=83.08  Aligned_cols=87  Identities=30%  Similarity=0.446  Sum_probs=76.0

Q ss_pred             CCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEE
Q psy17253        135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD  213 (227)
Q Consensus       135 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~  213 (227)
                      ++.|+|.+|.+.+..+..+..+.+   |+.|++++|.+. .+|..+..+++|+.|++++|+++...|..++.+++|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~---L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRH---LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCC---CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            778999999998877776666655   999999999997 6788889999999999999999987789999999999999


Q ss_pred             cCCCcCc-ccCC
Q psy17253        214 ISHNLLT-TLEE  224 (227)
Q Consensus       214 l~~n~l~-~lp~  224 (227)
                      +++|.++ .+|.
T Consensus       497 Ls~N~l~g~iP~  508 (623)
T PLN03150        497 LNGNSLSGRVPA  508 (623)
T ss_pred             CcCCcccccCCh
Confidence            9999987 4553

>KOG1909|consensus

Probab=98.45  E-value=7.8e-08  Score=76.01  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             CccEEEeCCCCCCCCChhhhhc----ccccccEEEccCCCCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQE----LGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~----~~~~L~~L~l~~n~~~~   82 (227)
                      ++++|++|+|-+..-....|..    .. .|++|.+.+|.+..
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGP  134 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCCh
Confidence            7999999999887433333332    33 68889999999876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=2.9e-07  Score=51.38  Aligned_cols=39  Identities=31%  Similarity=0.608  Sum_probs=17.8

Q ss_pred             CCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       185 L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      |+.|++++|+|+.+ +..++.+++|+.|++++|+++++++
T Consensus         3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCcC
Confidence            44444444444444 2234445555555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=5.2e-07  Score=50.37  Aligned_cols=40  Identities=38%  Similarity=0.537  Sum_probs=30.6

Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccC
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS  149 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~  149 (227)
                      ++|++|++++|+|+.+|+.+..+++|+.|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3678888888888888877888888888888888887653

...

>KOG0531|consensus

Probab=98.37  E-value=4.5e-08  Score=82.00  Aligned_cols=36  Identities=39%  Similarity=0.557  Sum_probs=15.7

Q ss_pred             ccEEEccCCCcccccccccCCCCCCEEEcCCCcCccc
Q psy17253        112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI  148 (227)
Q Consensus       112 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  148 (227)
                      |+.|++++|.|..+.. +..+..|+.+++++|.+..+
T Consensus       142 L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  142 LKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             hhhheeccCcchhccC-CccchhhhcccCCcchhhhh
Confidence            4444444444444332 22244444444444444443

>KOG4579|consensus

Probab=98.31  E-value=3.1e-08  Score=68.48  Aligned_cols=108  Identities=24%  Similarity=0.310  Sum_probs=51.8

Q ss_pred             ccEEEccCCCcccccccc---cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEE
Q psy17253        112 IFELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL  188 (227)
Q Consensus       112 L~~L~l~~n~l~~l~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l  188 (227)
                      +..++|+.|.+-.++..+   .....|..++|++|.+...++..-.   .++.++.+++..|.+..+|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~---kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI---KFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhh---ccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            334455555544443322   2223444455555555544433211   1222555555555555555445555555555


Q ss_pred             eCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +++.|++... |..+..+.++..|+..+|.+-.||
T Consensus       106 Nl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  106 NLRFNPLNAE-PRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccccCccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence            5555555544 333333555555555555554444

>KOG1909|consensus

Probab=98.29  E-value=1.9e-07  Score=73.91  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=48.0

Q ss_pred             CccEEEeCCCCCCCC----ChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccC
Q psy17253         44 DSISLKIAVSNLNDL----PSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH  119 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  119 (227)
                      .++.|++++|.+..-    -...+...+ .|+..++++        .|.+.....+|..+-.+-+-+.+.+.|+.|+||+
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd--------~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSD--------MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHh--------hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            577788888877632    222333343 455544443        2233333444555555555455555677777776


Q ss_pred             CCccc-----ccccccCCCCCCEEEcCCCcCc
Q psy17253        120 NEIEN-----LDGALMGIHGLSRLDLSHNKLR  146 (227)
Q Consensus       120 n~l~~-----l~~~~~~l~~L~~L~l~~n~l~  146 (227)
                      |-+..     +..-+..+..|+.|.+.+|++.
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            65542     1122333445555555555543

>KOG0531|consensus

Probab=98.29  E-value=2.2e-07  Score=77.86  Aligned_cols=153  Identities=27%  Similarity=0.377  Sum_probs=105.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      ..+.++...+.+...... ...+. .++.+.+..|.+..                   ..+.+..+.+++.|++.+|.|+
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~-~l~~l~l~~n~i~~-------------------~~~~l~~~~~l~~l~l~~n~i~  108 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLT-SLKELNLRQNLIAK-------------------ILNHLSKLKSLEALDLYDNKIE  108 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhH-hHHhhccchhhhhh-------------------hhcccccccceeeeeccccchh
Confidence            556666666654433332 13333 56666677766653                   1111224578899999999988


Q ss_pred             cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCc-cc
Q psy17253        124 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DD  202 (227)
Q Consensus       124 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~  202 (227)
                      .+...+..+++|++|+++.|.|+.+..  +   ..++.|+.|++.+|.+..+.. +..+..|+.+++++|.+..+.. . 
T Consensus       109 ~i~~~l~~~~~L~~L~ls~N~I~~i~~--l---~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-  181 (414)
T KOG0531|consen  109 KIENLLSSLVNLQVLDLSFNKITKLEG--L---STLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-  181 (414)
T ss_pred             hcccchhhhhcchheeccccccccccc--h---hhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-
Confidence            877667778899999999999887642  2   333448889999999887764 4457888899999998888754 2 


Q ss_pred             cCCCCCCCEEEcCCCcCcccCC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ...+..++.+.+.+|.+..+..
T Consensus       182 ~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  182 LSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             hhhccchHHHhccCCchhcccc
Confidence            4667778888888888776643

>KOG1644|consensus

Probab=98.28  E-value=1.5e-06  Score=64.05  Aligned_cols=101  Identities=29%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEE
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRL  188 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l  188 (227)
                      +...++|++|.+..++. |..++.|++|.+..|.|+.+.+.--..++   +|..|.+.+|.++.+.  ..+..+++|+.|
T Consensus        43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p---~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLP---NLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhcc---ccceEEecCcchhhhhhcchhccCCcccee
Confidence            45556666666555433 55556666666666666666554322222   3666666666666553  234555666666


Q ss_pred             eCCCCccccCC---ccccCCCCCCCEEEcC
Q psy17253        189 DLSHNKLRTIS---PDDFIGLDSLKMLDIS  215 (227)
Q Consensus       189 ~l~~n~l~~~~---~~~~~~~~~L~~L~l~  215 (227)
                      .+-+|.+.+..   ...+..+++|+.||.+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehh
Confidence            66666665432   2345556666666644

>KOG1644|consensus

Probab=98.25  E-value=2.1e-06  Score=63.26  Aligned_cols=124  Identities=24%  Similarity=0.308  Sum_probs=81.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      .=+++++++..+..+..  ++....+...+|+++|.+.. +.                 +    .+++.|.+|.+.+|+|
T Consensus        20 ~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~~-----------------l----p~l~rL~tLll~nNrI   76 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLDN-----------------L----PHLPRLHTLLLNNNRI   76 (233)
T ss_pred             cccccccccccccchhh--ccccccccceecccccchhhccc-----------------C----CCccccceEEecCCcc
Confidence            34567777776665544  22221256677888887653 11                 1    1357788888888888


Q ss_pred             ccccccccCC-CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCEEeCCC
Q psy17253        123 ENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSH  192 (227)
Q Consensus       123 ~~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~  192 (227)
                      +.+.+.+..+ ++|+.|.+.+|.|..+.  .+..+..++.|+.|.+-+|.+..-..    .+..++++++||...
T Consensus        77 t~I~p~L~~~~p~l~~L~LtnNsi~~l~--dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   77 TRIDPDLDTFLPNLKTLILTNNSIQELG--DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeccchhhhccccceEEecCcchhhhh--hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8886555544 67888888888887654  34445555668888888888775442    246678888888765

>KOG4579|consensus

Probab=98.21  E-value=5.2e-08  Score=67.37  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhccc-ccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      .+..++++.|.+..++........ -.|+..++++|.+..            +|..+..      .++.++.+++++|.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~------------fp~kft~------kf~t~t~lNl~~nei   89 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK------------FPKKFTI------KFPTATTLNLANNEI   89 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh------------CCHHHhh------ccchhhhhhcchhhh
Confidence            466788888888877654333222 046667888888775            1211111      246788899999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccC
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI  198 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~  198 (227)
                      .++|..+..++.|+.|++..|.+...+. .+..+.+   +..|+...|.+-.+|-.+..-......++.++.+.+-
T Consensus        90 sdvPeE~Aam~aLr~lNl~~N~l~~~p~-vi~~L~~---l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen   90 SDVPEELAAMPALRSLNLRFNPLNAEPR-VIAPLIK---LDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             hhchHHHhhhHHhhhcccccCccccchH-HHHHHHh---HHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence            9998888899999999999998876643 3333444   7778888888888874343333333444455555544

>KOG1859|consensus

Probab=98.15  E-value=5.2e-08  Score=83.87  Aligned_cols=106  Identities=27%  Similarity=0.337  Sum_probs=86.4

Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeC
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL  190 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l  190 (227)
                      .|...+.++|.+..+..++.-++.++.|+|++|+++...  .+   ..++.|++||+++|.++.+|..-...++|..|.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~L---r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NL---RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HH---Hhcccccccccccchhccccccchhhhhheeeee
Confidence            466778889999888888888899999999999998765  34   3445599999999999999854344455999999


Q ss_pred             CCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      ++|-++.+  ..+.++++|..||++.|-+.+..
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hs  270 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHS  270 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcch
Confidence            99999876  34678899999999999876643

>KOG4658|consensus

Probab=98.11  E-value=3.1e-06  Score=76.67  Aligned_cols=106  Identities=21%  Similarity=0.280  Sum_probs=81.2

Q ss_pred             CccEEEeCCCC--CCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSN--LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      ++++|-+..|.  +..++.+.|..++ .|+.||+++|.                  ++..+|+.++.+-+|++|+++++.
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~------------------~l~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNS------------------SLSKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCC------------------ccCcCChHHhhhhhhhcccccCCC
Confidence            69999999987  7888888899998 99999999976                  233334444455789999999999


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE  171 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  171 (227)
                      +..+|..+..+..|.+|++..+.-....++....+.+   |+.|.+....
T Consensus       607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~---Lr~L~l~~s~  653 (889)
T KOG4658|consen  607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS---LRVLRLPRSA  653 (889)
T ss_pred             ccccchHHHHHHhhheeccccccccccccchhhhccc---ccEEEeeccc
Confidence            9999999999999999999877644444444433544   7777775554

>KOG2982|consensus

Probab=97.96  E-value=7.6e-06  Score=63.95  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=22.1

Q ss_pred             CCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCc
Q psy17253        184 GLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .+.-|+++.++|..+. -+++.+++.|..|.+..|++.
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            3334555555555543 245667777777777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=0.00023  Score=58.92  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN   79 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~   79 (227)
                      +++.|++++|.|..+|.     ++.+|+.|.++++.
T Consensus        53 ~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~   83 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV-----LPNELTEITIENCN   83 (426)
T ss_pred             CCCEEEeCCCCCcccCC-----CCCCCcEEEccCCC
Confidence            68899999998888872     33478899988744

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.66  E-value=0.00029  Score=48.84  Aligned_cols=32  Identities=6%  Similarity=0.243  Sum_probs=12.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTK   77 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~   77 (227)
                      +++.+.+.. .+..++..+|.... .++.+.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~   44 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCT-SLKSINFPN   44 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-T-T-SEEEESS
T ss_pred             CCCEEEECC-CeeEeChhhccccc-ccccccccc
Confidence            345555543 34455555555544 455555444

>KOG3665|consensus

Probab=97.64  E-value=4.5e-05  Score=67.59  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=72.4

Q ss_pred             CccEEEeCCCCC-C-CCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSNL-N-DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~l-~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      +|+.|+|++... . ..+...-.-++ +|+.|.+++-.+..                 +.+-.+...+++|..||+++++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LP-sL~sL~i~~~~~~~-----------------~dF~~lc~sFpNL~sLDIS~Tn  184 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLP-SLRSLVISGRQFDN-----------------DDFSQLCASFPNLRSLDISGTN  184 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCc-ccceEEecCceecc-----------------hhHHHHhhccCccceeecCCCC
Confidence            677777776542 2 33333333343 77777777766542                 0111222346778888888877


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch----hhh---cCCCCCCEEeCCCCc
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD----GAL---MGIHGLSRLDLSHNK  194 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~---~~~~~L~~l~l~~n~  194 (227)
                      ++.+. .+..+++|++|.+.+=.+..  ...+..+-.+++|+.||+|+......+    .++   ..++.|+.||.+++.
T Consensus       185 I~nl~-GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  185 ISNLS-GISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             ccCcH-HHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            77763 36677777776555433322  112222223444777777776543222    111   345677777777766


Q ss_pred             ccc
Q psy17253        195 LRT  197 (227)
Q Consensus       195 l~~  197 (227)
                      +..
T Consensus       262 i~~  264 (699)
T KOG3665|consen  262 INE  264 (699)
T ss_pred             hhH
Confidence            543

>KOG4658|consensus

Probab=97.52  E-value=6e-05  Score=68.53  Aligned_cols=85  Identities=20%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             hcCCCcccEEEccCC-CcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC-cCchhhhcCCC
Q psy17253        106 VQGVTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI-ENLDGALMGIH  183 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~  183 (227)
                      +..++.|.+|||++| .+..+|..++.+.+|++|++++..+..+|. .+   .++..|.+|++..+.. ..++.....+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~-~l---~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~  642 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS-GL---GNLKKLIYLNLEVTGRLESIPGILLELQ  642 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch-HH---HHHHhhheeccccccccccccchhhhcc
Confidence            334566666666654 344566666666666666666666665543 22   2333366666665542 23334444466


Q ss_pred             CCCEEeCCCCc
Q psy17253        184 GLSRLDLSHNK  194 (227)
Q Consensus       184 ~L~~l~l~~n~  194 (227)
                      +|++|.+....
T Consensus       643 ~Lr~L~l~~s~  653 (889)
T KOG4658|consen  643 SLRVLRLPRSA  653 (889)
T ss_pred             cccEEEeeccc
Confidence            66666655543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.47  E-value=0.00065  Score=47.05  Aligned_cols=107  Identities=20%  Similarity=0.418  Sum_probs=59.7

Q ss_pred             CCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253        109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~  186 (227)
                      ..+|+.+.+.. .++.+ ...|..+.+|+.+.+..+ +..+....+..+..   ++.+.+.. .+..++ ..+..+.+++
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~---l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKS---LESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT----EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccc---cccccccc-ccccccccccccccccc
Confidence            45788888875 56666 456777778888888774 77776666666655   88888865 555565 4456678888


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+.+..+ +..+....|... .++.+.+.+ .++.++.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE  119 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence            8888765 666766778877 788888765 5555543

>KOG3665|consensus

Probab=97.44  E-value=0.00018  Score=63.82  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=72.4

Q ss_pred             CCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCC
Q psy17253        109 VTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHG  184 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~  184 (227)
                      +|.|+.|.+++-.+..  +..-...+++|..||+++.+++.+     .+..++++|+.|.+.+=.+....  ..+..+++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            7888888888765543  233345678888999998888765     23344445887777666665433  35678899


Q ss_pred             CCEEeCCCCccccCC------ccccCCCCCCCEEEcCCCcCc
Q psy17253        185 LSRLDLSHNKLRTIS------PDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       185 L~~l~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      |++||+|..+-....      -+.-..++.|+.||.+++.+.
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            999999987554321      123344789999999987653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.27  E-value=0.00024  Score=55.15  Aligned_cols=144  Identities=14%  Similarity=0.165  Sum_probs=72.4

Q ss_pred             CccEEEeCCCCCCCCChh----hhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccC
Q psy17253         44 DSISLKIAVSNLNDLPSK----TFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH  119 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  119 (227)
                      .++.+++|+|.|+.-...    .+.... +|+..+++.        +|.+..-..++..+..+-..+.+.+.|+.++||+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd--------~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSD--------AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhh--------hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            577788888877643222    223333 455544443        2222222334444444444555677788888887


Q ss_pred             CCccc-cc----ccccCCCCCCEEEcCCCcCcccCCCCCC----------CCCCCCcccEEEcCCCCCcCchh-----hh
Q psy17253        120 NEIEN-LD----GALMGIHGLSRLDLSHNKLRTISPDDFI----------GLDSVTNIFELKLQHNEIENLDG-----AL  179 (227)
Q Consensus       120 n~l~~-l~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~~~~-----~~  179 (227)
                      |.+.. .|    .-+..-..|..|.+++|++..+...-++          ....=+.|+.+...+|++...+.     .+
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            76653 12    2334445677777777766443322221          01112346666666666654331     12


Q ss_pred             cCCCCCCEEeCCCCccc
Q psy17253        180 MGIHGLSRLDLSHNKLR  196 (227)
Q Consensus       180 ~~~~~L~~l~l~~n~l~  196 (227)
                      ..-..++.+.+.+|.|.
T Consensus       182 ~sh~~lk~vki~qNgIr  198 (388)
T COG5238         182 ESHENLKEVKIQQNGIR  198 (388)
T ss_pred             HhhcCceeEEeeecCcC
Confidence            22234555555555543

>KOG2739|consensus

Probab=97.20  E-value=0.00014  Score=55.82  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=46.3

Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCC--cCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCC
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN--KLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGL  185 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L  185 (227)
                      ..++.+.+.+..++.+.. +..+++|+.|.++.|  ++..-..-.   ....++|+++++++|+++.+.  ..+..+.+|
T Consensus        43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcch
Confidence            344445555554444332 445556666666666  222111111   112244666666666665321  223444555


Q ss_pred             CEEeCCCCccccCC---ccccCCCCCCCEEE
Q psy17253        186 SRLDLSHNKLRTIS---PDDFIGLDSLKMLD  213 (227)
Q Consensus       186 ~~l~l~~n~l~~~~---~~~~~~~~~L~~L~  213 (227)
                      ..|++..|..+...   ...|.-+++|+.||
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            66666666554432   12344444444443

>KOG2120|consensus

Probab=97.20  E-value=1.8e-05  Score=61.93  Aligned_cols=38  Identities=16%  Similarity=0.116  Sum_probs=26.4

Q ss_pred             CccEEEeCCCCCCC-CChhhhhcccccccEEEccCCCCCC
Q psy17253         44 DSISLKIAVSNLND-LPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        44 ~l~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      +++.||++...|+. --...++... +|+.|.+.++++..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD  224 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDD  224 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCc
Confidence            68889998888773 2233345555 78888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.00021  Score=55.49  Aligned_cols=166  Identities=21%  Similarity=0.229  Sum_probs=101.1

Q ss_pred             CccEEEeCCCCCCC-CChh---hhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchh--hhhcCCCcccEEE
Q psy17253         44 DSISLKIAVSNLND-LPSK---TFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLK--NQVQGVTNIFELK  116 (227)
Q Consensus        44 ~l~~L~l~~~~l~~-~~~~---~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~l~~L~~L~  116 (227)
                      +++.+++|+|.++. +|..   .++... .|.+|.+++|.+.. .....        ...+.++.  +-...-+.|++++
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~NnGlGp~aG~ri--------gkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLNNNGLGPIAGGRI--------GKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCC-CceeEEeecCCCCccchhHH--------HHHHHHHHHHhhhccCCCceEEE
Confidence            78999999998873 3322   233333 68899999998875 22221        11111111  1122356799999


Q ss_pred             ccCCCccccc-----ccccCCCCCCEEEcCCCcCcccCCC--CCCCCCCCCcccEEEcCCCCCcCch-----hhhcCCCC
Q psy17253        117 LQHNEIENLD-----GALMGIHGLSRLDLSHNKLRTISPD--DFIGLDSVTNIFELKLQHNEIENLD-----GALMGIHG  184 (227)
Q Consensus       117 l~~n~l~~l~-----~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~-----~~~~~~~~  184 (227)
                      ...|++..-+     ..+....+|+.+.+..|+|......  .+.++..+.+|+.|++++|.++...     ..+..++.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            9999887643     3344456889999999988643111  2223334456999999999987432     34577788


Q ss_pred             CCEEeCCCCccccCCccc----cC--CCCCCCEEEcCCCc
Q psy17253        185 LSRLDLSHNKLRTISPDD----FI--GLDSLKMLDISHNL  218 (227)
Q Consensus       185 L~~l~l~~n~l~~~~~~~----~~--~~~~L~~L~l~~n~  218 (227)
                      |+.|.+.+|-++......    |.  ..++|..|-...|.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            899999988776543211    11  23455555555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.10  E-value=0.0036  Score=51.97  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCC
Q psy17253        183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN  217 (227)
Q Consensus       183 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  217 (227)
                      .+|+.|++++|..... |..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~L-P~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIIL-PEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccC-ccccc--ccCcEEEeccc
Confidence            4688888888775543 32222  46888888776

>KOG2982|consensus

Probab=97.01  E-value=0.0007  Score=53.28  Aligned_cols=167  Identities=18%  Similarity=0.235  Sum_probs=95.6

Q ss_pred             CccEEEeCCCCCCCCC--hhhhhcccccccEEEccCCCCCC-CCCC-CCCCC-----CCCCcchhhchhhhhcCCCcccE
Q psy17253         44 DSISLKIAVSNLNDLP--SKTFQELGLQIVNLKLTKNNLRP-DGAA-LRPID-----VCAPPSTLDNLKNQVQGVTNIFE  114 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~n~~~~-~~~~-~~~~~-----l~~~~~~~~~~~~~~~~l~~L~~  114 (227)
                      +++.+|+.+|.|+.+.  ...+++++ .++.|+++.|++.. .... .....     +...-.++....+....++.++.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            7899999999998653  33567787 99999999999886 2111 11111     11111133344444455667777


Q ss_pred             EEccCCCccc----------ccccc--------------------cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccE
Q psy17253        115 LKLQHNEIEN----------LDGAL--------------------MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE  164 (227)
Q Consensus       115 L~l~~n~l~~----------l~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~  164 (227)
                      |+++.|++..          +...+                    .-++++..+-+..+.+......  .+...++++--
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~  228 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLSC  228 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcchh
Confidence            7777664321          11000                    1234555555556655443211  12233445666


Q ss_pred             EEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc------cccCCCCCCCEEE
Q psy17253        165 LKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP------DDFIGLDSLKMLD  213 (227)
Q Consensus       165 l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~------~~~~~~~~L~~L~  213 (227)
                      |+++.++|..+.  +.+.+++.+.-+.++++.+.+...      -.++.+++++.|+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            778888887664  456777778888888877755321      1345566666554

>KOG2123|consensus

Probab=96.99  E-value=3.2e-05  Score=60.05  Aligned_cols=99  Identities=27%  Similarity=0.270  Sum_probs=74.1

Q ss_pred             CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCC
Q psy17253        109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~  186 (227)
                      +.+++.|+.-++.++++.- ...|+.|++|.|+-|+|+.+.+  +..++   .|++|+|..|.|..+.  .++.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCt---rLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCT---RLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHH---HHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            5677888888888887644 3578899999999999987753  34444   4999999999999887  4678999999


Q ss_pred             EEeCCCCccccCCc-----cccCCCCCCCEEE
Q psy17253        187 RLDLSHNKLRTISP-----DDFIGLDSLKMLD  213 (227)
Q Consensus       187 ~l~l~~n~l~~~~~-----~~~~~~~~L~~L~  213 (227)
                      .|.+..|.=.+..+     ..+.-+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999886543322     2344566666665

>KOG2739|consensus

Probab=96.60  E-value=0.0014  Score=50.39  Aligned_cols=86  Identities=24%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc---CchhhhcCCCCCCEEeCCCCccccCC-ccccCCC
Q psy17253        131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGL  206 (227)
Q Consensus       131 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~  206 (227)
                      .+..|+.+++.+..++..     ..++.+++|+.|.++.|.+.   .++.....+++|+++++++|++..+. -..+..+
T Consensus        41 ~~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhccceeec-----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            344566666666665543     34566677999999999543   23333455699999999999987642 1235666


Q ss_pred             CCCCEEEcCCCcCcc
Q psy17253        207 DSLKMLDISHNLLTT  221 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~  221 (227)
                      .+|..|++..|..+.
T Consensus       116 ~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCccc
Confidence            778899999887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.48  E-value=0.0017  Score=30.17  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=13.0

Q ss_pred             cccEEEccCCCccccccccc
Q psy17253        111 NIFELKLQHNEIENLDGALM  130 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~  130 (227)
                      +|++|++++|+++.+|.+|.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            36677777777776666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120|consensus

Probab=96.34  E-value=0.00049  Score=54.15  Aligned_cols=153  Identities=20%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|.+.++.+.+--...++... +|+.|+++.+. +++                 ....-++..++.|..|+++.|.+
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~-----------------n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTE-----------------NALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccc-cceeeccccccccch-----------------hHHHHHHHhhhhHhhcCchHhhc
Confidence            688889999988876556666666 88899988665 221                 01111222345666777776654


Q ss_pred             cc-c-cccccC-CCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCC-CcC-chhhhcCCCCCCEEeCCCCccc
Q psy17253        123 EN-L-DGALMG-IHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNE-IEN-LDGALMGIHGLSRLDLSHNKLR  196 (227)
Q Consensus       123 ~~-l-~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~-~~~-~~~~~~~~~~L~~l~l~~n~l~  196 (227)
                      .. . ...+.- -++|..|++++..-.. ....++- ...+++|.+|||+++. ++. .-..+..++.|+++.++.|.. 
T Consensus       273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-  350 (419)
T KOG2120|consen  273 FTEKVTVAVAHISETLTQLNLSGYRRNL-QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-  350 (419)
T ss_pred             cchhhhHHHhhhchhhhhhhhhhhHhhh-hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-
Confidence            32 1 111111 1345556665542100 0001111 1223446667776664 332 112345556666666666643 


Q ss_pred             cCCcc---ccCCCCCCCEEEcCCC
Q psy17253        197 TISPD---DFIGLDSLKMLDISHN  217 (227)
Q Consensus       197 ~~~~~---~~~~~~~L~~L~l~~n  217 (227)
                       ++|.   .+...+.|..||+.+.
T Consensus       351 -i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  351 -IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -CChHHeeeeccCcceEEEEeccc
Confidence             2222   3455566666666553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.18  E-value=0.0033  Score=27.19  Aligned_cols=16  Identities=50%  Similarity=0.729  Sum_probs=9.1

Q ss_pred             CCCEEEcCCCcCcccC
Q psy17253        208 SLKMLDISHNLLTTLE  223 (227)
Q Consensus       208 ~L~~L~l~~n~l~~lp  223 (227)
                      +|+.|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5777788888777776

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.72  E-value=0.0055  Score=28.42  Aligned_cols=16  Identities=19%  Similarity=0.299  Sum_probs=8.0

Q ss_pred             ccEEEcCCCCCcCchh
Q psy17253        162 IFELKLQHNEIENLDG  177 (227)
Q Consensus       162 L~~l~l~~n~~~~~~~  177 (227)
                      |+.|++++|+++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4455555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123|consensus

Probab=95.28  E-value=0.00045  Score=53.81  Aligned_cols=81  Identities=23%  Similarity=0.242  Sum_probs=65.1

Q ss_pred             CCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCC
Q psy17253        132 IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLK  210 (227)
Q Consensus       132 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~  210 (227)
                      +.+.+.|+..++.++.+.     -+.+++.|+.|.|+.|.|+.+.. +..+++|+.|.|+.|.|.++. ...+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIs-----ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-----ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHH-----HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            456677888888887663     24556669999999999988854 678899999999999998875 34678899999


Q ss_pred             EEEcCCCc
Q psy17253        211 MLDISHNL  218 (227)
Q Consensus       211 ~L~l~~n~  218 (227)
                      .|-|..|+
T Consensus        92 ~LWL~ENP   99 (388)
T KOG2123|consen   92 TLWLDENP   99 (388)
T ss_pred             hHhhccCC
Confidence            99888885

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.27  E-value=0.013  Score=28.26  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=14.3

Q ss_pred             CCCCEEEcCCCcCcccCCC
Q psy17253        207 DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp~~  225 (227)
                      ++|+.|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677788888888888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.27  E-value=0.013  Score=28.26  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=14.3

Q ss_pred             CCCCEEEcCCCcCcccCCC
Q psy17253        207 DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp~~  225 (227)
                      ++|+.|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677788888888888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.62  E-value=0.062  Score=25.79  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=17.6

Q ss_pred             CccEEEeCCCCCCCCChhhhh
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQ   64 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~   64 (227)
                      +++.|++++|.|..+|..+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHcc
Confidence            478899999999999888775

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.62  E-value=0.062  Score=25.79  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=17.6

Q ss_pred             CccEEEeCCCCCCCCChhhhh
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQ   64 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~   64 (227)
                      +++.|++++|.|..+|..+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHcc
Confidence            478899999999999888775

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.06  E-value=0.11  Score=25.06  Aligned_cols=18  Identities=56%  Similarity=0.680  Sum_probs=14.9

Q ss_pred             CCCCEEEcCCCcCcccCC
Q psy17253        207 DSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp~  224 (227)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357888999999999886

>KOG0473|consensus

Probab=91.06  E-value=0.0046  Score=47.15  Aligned_cols=86  Identities=19%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             ccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCC
Q psy17253        129 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS  208 (227)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~  208 (227)
                      +......+.||++.|++..... .++   .++.+..++++-|++..+|..++....+..+++..|.++.. |..++..++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~-n~s---~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~  112 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK-NFS---ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPH  112 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc-chH---HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-CccccccCC
Confidence            3344455666777766544332 122   22336677777777777776665555566667777777665 566677777


Q ss_pred             CCEEEcCCCcC
Q psy17253        209 LKMLDISHNLL  219 (227)
Q Consensus       209 L~~L~l~~n~l  219 (227)
                      ++.+++.+|.+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            77777777664

>KOG3864|consensus

Probab=89.13  E-value=0.09  Score=39.31  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=25.2

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN   79 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~   79 (227)
                      .++.+|-+++.|..+..+.+.+++ .++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccc-hhhhheecccc
Confidence            577777777777777777777776 77777666665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.07  E-value=0.86  Score=21.98  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=11.0

Q ss_pred             CCCCEEEcCCCcCcccC
Q psy17253        207 DSLKMLDISHNLLTTLE  223 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp  223 (227)
                      .+|+.|+++.|.++.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            45667777777766654

>KOG4308|consensus

Probab=84.91  E-value=0.011  Score=50.46  Aligned_cols=175  Identities=25%  Similarity=0.288  Sum_probs=92.7

Q ss_pred             ccEEEeCCCCCCCCCh----hhhhcccccccEEEccCCCCCC-CCCCC----CC-------CCCCCCc---chhhchhhh
Q psy17253         45 SISLKIAVSNLNDLPS----KTFQELGLQIVNLKLTKNNLRP-DGAAL----RP-------IDVCAPP---STLDNLKNQ  105 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~~~~-~~~~~----~~-------~~l~~~~---~~~~~~~~~  105 (227)
                      +..|++.+|.+..-..    .++.... .|..|+++.|.+.. .....    ..       ..+....   .....+...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            7778888888875543    3455555 78888999888874 11111    00       0010000   011222233


Q ss_pred             hcCCCcccEEEccCCCccc-----cccccc----CCCCCCEEEcCCCcCcccCCCCCC-CCCCCCc-ccEEEcCCCCCcC
Q psy17253        106 VQGVTNIFELKLQHNEIEN-----LDGALM----GIHGLSRLDLSHNKLRTISPDDFI-GLDSVTN-IFELKLQHNEIEN  174 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~-L~~l~l~~n~~~~  174 (227)
                      +.....++.++++.|.+..     ++..+.    ...++++|.+.++.++......+. .+...+. +..+++..|++..
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            3334566777777776632     122222    355677777777766533221111 1122222 4557777777653


Q ss_pred             c-----hhhhcCC-CCCCEEeCCCCccccCC----ccccCCCCCCCEEEcCCCcCc
Q psy17253        175 L-----DGALMGI-HGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       175 ~-----~~~~~~~-~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .     .+.+... ..+++++++.|++....    ...+...+.++.+.+..|.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            2     1222333 45677888888776543    234445567777777777654

>KOG3864|consensus

Probab=84.82  E-value=0.11  Score=38.91  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=42.2

Q ss_pred             cccEEEccCCCcccc-cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCC-CcCch-hhhcCCCCCC
Q psy17253        111 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNE-IENLD-GALMGIHGLS  186 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~  186 (227)
                      .++.++-+++.|... -..+..++.++.|.+..+. +..+-...++.  -.++|+.|++++|. |++-. ..+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            366666666666543 2345566666666666553 22211111111  12347777777663 66543 4455666666


Q ss_pred             EEeCCC
Q psy17253        187 RLDLSH  192 (227)
Q Consensus       187 ~l~l~~  192 (227)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            666554

>KOG3763|consensus

Probab=84.00  E-value=0.68  Score=39.87  Aligned_cols=65  Identities=29%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             CCCcccEEEccCCCcccccc---cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc
Q psy17253        108 GVTNIFELKLQHNEIENLDG---ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE  173 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  173 (227)
                      ..+.+..+.|++|++..+..   --...++|..|+|++|.........+..++. ..|++|.+.+|.+.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence            56788888888888776532   2234477888888888321111112222322 22788888888764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.55  E-value=0.92  Score=21.08  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=6.9

Q ss_pred             CCCCEEEcCCCcCc
Q psy17253        207 DSLKMLDISHNLLT  220 (227)
Q Consensus       207 ~~L~~L~l~~n~l~  220 (227)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45566666666554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-07
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		4e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		4e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-06
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		7e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		9e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		1e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		4e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		5e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		5e-04

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +Q + N+  L L  N++ ++  AL  +  L+ L L+ N+L+++    F   D +TN+ EL
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVF---DKLTNLKEL 114
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            L  N++++L DG    +  L+ L+L+HN+L+++    F  L +L  LD+S+N L +L E
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 114 ELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           EL+L +NE   L+  G    +  L +++ S+NK+  I    F G   V    E+ L  N 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN---EILLTSNR 92
Query: 172 IENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           +EN+   +  G+  L  L L  N++  +  D FIGL S+++L +  N +TT+
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 44  DSISLKIAVSNLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDG--AALRPIDVCAPPSTLD 100
           D+  L +  + L+ LPSK F  L  L+++ L   K    P G    L+ ++      TL 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE------TLW 91
Query: 101 NLKNQVQGV--------TNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPD 151
              N++Q +         N+ EL+L  N++++L   +   +  L+ L L +N+L+++   
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 152 DFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210
            F   D +T++ EL+L +N+++ + +GA   +  L  L L +N+L+ +    F  L+ LK
Sbjct: 152 VF---DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 211 MLDISHN 217
           ML +  N
Sbjct: 209 MLQLQEN 215

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGA---------ALRPIDVCAPPST 98
           L++  + L  LP   F +L  Q+  L L+ N L   G          +L+ +D+    + 
Sbjct: 33  LELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL--SFNG 89
Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           +  + +   G+  +  L  QH+ ++ +      + +  L  LD+SH   R      F GL
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 157 DSVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
            S+     LK+  N  +   L      +  L+ LDLS  +L  +SP  F  L SL++L++
Sbjct: 150 SSLE---VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 215 SHNLLTTLE 223
           SHN   +L+
Sbjct: 207 SHNNFFSLD 215

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           L L   EIE + D A  G+H LS L L+ N +++ SP  F GL S+ N+  ++ +   +E
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL 222
           +   G L+    L +L+++HN + +   P  F  L +L  +D+S+N + T+
Sbjct: 121 SFPIGQLI---TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           L L   EIE + D A  G+H LS L L+ N +++ SP  F GL S+ N+  ++ +   +E
Sbjct: 56  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 115
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL 222
           +   G L+    L +L+++HN + +   P  F  L +L  +D+S+N + T+
Sbjct: 116 SFPIGQLI---TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           EL L  NE+  +  DG    +  L +L+L  N+L  I P+ F G    ++I EL+L  N+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGENK 89
Query: 172 IENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           I+ +   + +G+H L  L+L  N++  + P  F  L+SL  L+++ N
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +Q + N+  L L  N++ ++  AL  +  L+ L L+ N+L+++    F   D +TN+ EL
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVF---DKLTNLKEL 114
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            L  N++++L DG    +  L+ L L HN+L+++    F  L +L  LD+ +N L +L E
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
           I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL S+ +   L L  N
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS---LVLYGN 90
Query: 171 EIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           +I  L  +L  G+  L  L L+ NK+  +  D F  L +L +L +  N L T+ +
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
           I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL S+ +   L L  N
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS---LVLYGN 90
Query: 171 EIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           +I  L  +L  G+  L  L L+ NK+  +  D F  L +L +L +  N L T+ +
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 310
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N I ++   +  +  L RL  S+NK+  +S      L ++  L   HN
Sbjct: 311 TLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHN 359

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L
Sbjct: 256 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 309
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N I ++   +  +  L RL  S+NK+  +S      L ++  L   HN
Sbjct: 310 TLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHN 358

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 86  ALRPIDVCAPPSTLD---NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 142
            L  +DV     T+D   N  N +   +  F L L H+    + GA  G H +   D   
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISK-SQAFSLILAHH----IMGAGFGFHNIKDPD--- 256
Query: 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPD 201
                   + F GL + +++  L L H  + +L+  +   +  L  L+L++NK+  I+ +
Sbjct: 257 -------QNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 202 DFIGLDSLKMLDISHNLLTTLEET 225
            F GLD+L++L++S+NLL  L  +
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSS 332

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
           +G+ N+  L L    ++++   L  +  L  L+LS N+L  I P  F GL S+  ++ + 
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            Q   IE    A   +  L  L+LSHN L ++  D F  L  L+ + ++HN
Sbjct: 212 AQVATIER--NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 103 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
           +   +G+ N+  L L    I+++   L  + GL  L++S N    I P  F GL S+  +
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           + +  Q + IE    A  G+  L  L+L+HN L ++  D F  L  L  L + HN
Sbjct: 248 WVMNSQVSLIER--NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
           +G+ N+  L L    ++++   L  +  L  L+LS N+L  I P  F GL S+  ++ + 
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            Q   IE    A   +  L  L+LSHN L ++  D F  L  L+ + ++HN
Sbjct: 212 AQVATIER--NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
Query: 57  DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELK 116
           DLPS  F +L    ++ K   +       +L+ +D+    + +  + +   G+  +  L 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLD 402
Query: 117 LQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
            QH+ ++ +      + +  L  LD+SH   R      F GL S+     LK+  N  + 
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---VLKMAGNSFQE 459
Query: 175 --LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
             L      +  L+ LDLS  +L  +SP  F  L SL++L++SHN   +L+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 108 GVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           G+  +  L  QH+ ++ +      + +  L  LD+SH   R      F GL S+     L
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---VL 474
Query: 166 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           K+  N  +   L      +  L+ LDLS  +L  +SP  F  L SL++L++SHN   +L+
Sbjct: 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L
Sbjct: 260 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 313
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N I ++   +  +  L RL  ++NK+  +S      L ++  L   HN
Sbjct: 314 TLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHN 362

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 27/136 (19%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLD--------------- 157
           L+L+H  I  + D +   ++ L  L++SH   L T++P+   GL+               
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 158 --SVTNIFELK---LQHNEIENLDGALMGIHGLSRLD---LSHNKLRTISPDDFIGLDSL 209
             +V ++  L+   L +N I  ++G+++  H L RL    L   +L  + P  F GL+ L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 210 KMLDISHNLLTTLEET 225
           ++L++S N LTTLEE+
Sbjct: 299 RVLNVSGNQLTTLEES 314

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 34  VDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPID 91
           +D     + +    L +  + +  LP   FQ + L  V L L +N+L   P G       
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-LVLERNDLSSLPRGIFHNTPK 142
Query: 92  VCAPPSTLDNLK----NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 147
           +     + +NL+    +  Q  T++  L+L  N + ++D +L  I  L   ++S+N L T
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLST 200
Query: 148 IS-PDDFIGLDSVTNIFE------------LKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
           ++ P     LD+  N               LKLQHN + +    L+   GL  +DLS+N+
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 259
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
           L  I    F+ +  L+ L IS+N L  L
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVAL 287

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 310
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N I ++   +  +  L RL   +NK+  +S      L ++  L   HN
Sbjct: 311 TLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 359

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 80  LRPDGAALRPIDVCAPPSTLDNL---KNQVQ------GVTNIFELKLQHNEIENLDGALM 130
           L  +G  L+ I   A  + L +L    NQ+       G+T + ELKL  N+I N+   L 
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SPLA 280
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
           G+  L+ L+L+ N+L  ISP     + ++ N+  L L  N I ++   +  +  L RL  
Sbjct: 281 GLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF 334
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHN 217
            +NK+  +S      L ++  L   HN
Sbjct: 335 YNNKVSDVS--SLANLTNINWLSAGHN 359

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 80  LRPDGAALRPIDVCAPPSTLDNL---KNQVQ------GVTNIFELKLQHNEIENLDGALM 130
           L  +G  L+ I   A  + L +L    NQ+       G+T + ELKL  N+I N+   L 
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SPLA 279
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
           G+  L+ L+L+ N+L  ISP     + ++ N+  L L  N I ++   +  +  L RL  
Sbjct: 280 GLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF 333
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHN 217
            +NK+  +S      L ++  L   HN
Sbjct: 334 YNNKVSDVS--SLANLTNINWLSAGHN 358

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L
Sbjct: 261 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 314
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N I ++   +  +  L RL   +NK+  +S      L ++  L   HN
Sbjct: 315 TLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 363

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 34  VDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPID 91
           +D     + +    L +  + +  LP   FQ + L  V L L +N+L   P G       
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-LVLERNDLSSLPRGIFHNTPK 148
Query: 92  VCAPPSTLDNLK----NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 147
           +     + +NL+    +  Q  T++  L+L  N + ++D +L  I  L   ++S+N L T
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLST 206
Query: 148 IS-PDDFIGLDSVTNIFE------------LKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
           ++ P     LD+  N               LKLQHN + +    L+   GL  +DLS+N+
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 265
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
           L  I    F+ +  L+ L IS+N L  L
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVAL 293

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
           G+   DLS +K+  +    F      T++ +L L  NEI  +D  A  G+  L +L+LS 
Sbjct: 276 GVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           N L +I    F  LD L++LD+S+N +  L + S
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
           G T++  L L  N +  +    +G+  L  LD  H+ L+ +S  +F    S+ N+  L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDI 428
Query: 168 QHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLEET 225
            H       +G   G+  L  L ++ N  +    PD F  L +L  LD+S   L  L  T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 226 S 226
           +
Sbjct: 489 A 489

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 46  ISLKIAVSNLNDLPSKTFQELGLQ-IVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN 104
           +SL    ++L  L ++TF  L    ++ L LTKN++                S + N   
Sbjct: 358 LSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI----------------SKIANGTF 401
Query: 105 QVQGVTNIFELKLQHNEIEN-LDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
              G   I +L L  NEIE  L G    G+  +  + LS+NK   +S   F  + S+   
Sbjct: 402 SWLGQLRILDLGL--NEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQ-- 457
Query: 163 FELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
             L L+   ++N+D        +  L+ LDLS+N +  I+ D   GL++L++LD  HN L
Sbjct: 458 -RLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Query: 220 TTLEE 224
             L +
Sbjct: 517 ARLWK 521

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH 192
            +  LDLS NK+  I   D   L +  N+  L L+ + I  ++G A   +  L  LDLS 
Sbjct: 53  AMKSLDLSFNKITYIGHGD---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           N L ++S   F  L SLK L++  N   TL  TS
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           TNI  L L HN++  L  A       L+ LD+  N +  + P+    L  +     L LQ
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 81
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
           HNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH 192
            +  LDLS NK+  I   D   L +  N+  L L+ + I  ++G A   +  L  LDLS 
Sbjct: 27  AMKSLDLSFNKITYIGHGD---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           N L ++S   F  L SLK L++  N   TL  TS
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           TNI  L L HN++  L  A       L+ LD+  N +  + P+    L  +     L LQ
Sbjct: 30  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 86
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
           HNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++
Sbjct: 87  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           TNI  L L HN++  L  A       L+ LD+  N +  + P+    L  +     L LQ
Sbjct: 35  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 91
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
           HNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++
Sbjct: 92  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 5e-25
 Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 30/221 (13%)

Query: 7   PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
           PC   C       +   C       Q + A+       S  + +  + ++ +P+ +F+  
Sbjct: 1   PCPGACVCYNEPKVTTSCP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRAC 55

Query: 67  GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE-IENL 125
              +  L L  N L                +    L         + +L L  N  + ++
Sbjct: 56  R-NLTILWLHSNVLA-----------RIDAAAFTGL-------ALLEQLDLSDNAQLRSV 96

Query: 126 -DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIH 183
                 G+  L  L L    L+ + P  F GL     +  L LQ N ++ L D     + 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQALPDDTFRDLG 153

Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            L+ L L  N++ ++    F GL SL  L +  N +  +  
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 6e-24
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 24/167 (14%)

Query: 53  SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           + L  +   TF  LG ++  L L +  L+              P     L         +
Sbjct: 91  AQLRSVDPATFHGLG-RLHTLHLDRCGLQ-----------ELGPGLFRGL-------AAL 131

Query: 113 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
             L LQ N ++ L D     +  L+ L L  N++ ++    F GL S+     L L  N 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD---RLLLHQNR 188

Query: 172 IENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           + ++   A   +  L  L L  N L  +  +    L +L+ L ++ N
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 4e-24
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L+++P             L L +NN++                T  +L        ++ 
Sbjct: 65  GLSEVPQGIPSNT----RYLNLMENNIQ-----------MIQADTFRHL-------HHLE 102

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L+L  N I  +  GA  G+  L+ L+L  N L  I    F  L  +    EL L++N I
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR---ELWLRNNPI 159

Query: 173 ENL-DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           E++   A   +  L RLDL    KL  IS   F GL +LK L++    +  +  
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 3e-23
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
            L  +PS  F+ L  ++  L L  N +   P  A     +L  +D+      L+ +    
Sbjct: 134 WLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-LEYISEGA 191

Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
            +G+ N+  L L    I+++   L  + GL  L++S N    I P  F GL S+    +L
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK---KL 247

Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            + ++++  ++  A  G+  L  L+L+HN L ++  D F  L  L  L + HN
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 27/176 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           N+  + + TF+ L   +  L+L +N++R                  + L        ++ 
Sbjct: 86  NIQMIQADTFRHLH-HLEVLQLGRNSIR-----------QIEVGAFNGL-------ASLN 126

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH-NE 171
            L+L  N +  +  GA   +  L  L L +N + +I    F  +    ++  L L    +
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV---PSLMRLDLGELKK 183

Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           +E + +GA  G+  L  L+L    ++ +   +   L  L+ L++S N    +   S
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 3e-23
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 15/173 (8%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
            L  +P+  F  L  ++  L L  N +   P  A     +LR +D+      L  +    
Sbjct: 123 RLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR-LSYISEGA 180

Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
            +G++N+  L L    +  +   L  +  L  LDLS N L  I P  F GL  +    +L
Sbjct: 181 FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ---KL 236

Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +  ++I+ ++  A   +  L  ++L+HN L  +  D F  L  L+ + + HN
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 4e-23
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 28/174 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           NL ++P             L L +N ++               ++  +L        ++ 
Sbjct: 54  NLREVPDGISTNT----RLLNLHENQIQ-----------IIKVNSFKHL-------RHLE 91

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L+L  N I  +  GA  G+  L+ L+L  N+L TI    F+ L  +    EL L++N I
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK---ELWLRNNPI 148

Query: 173 ENL-DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           E++   A   I  L RLDL    +L  IS   F GL +L+ L+++   L  +  
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  +   +F+ L   +  L+L++N++R                  + L        N+ 
Sbjct: 75  QIQIIKVNSFKHLR-HLEILQLSRNHIR-----------TIEIGAFNGL-------ANLN 115

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH-NE 171
            L+L  N +  + +GA + +  L  L L +N + +I    F  +    ++  L L     
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGELKR 172

Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           +  + +GA  G+  L  L+L+   LR I   +   L  L  LD+S N L+ +   S
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGS 226

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 5e-23
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 34/198 (17%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
            L++  + +  +    F  L  Q++ ++L  N L+                    +K   
Sbjct: 125 ELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLK---------SSGIENGAFQGMKKLS 174

Query: 104 ------NQVQGV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD 151
                   +  +      ++ EL L  N+I  +   +L G++ L++L LS N +  +   
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 152 DFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------G 205
                    ++ EL L +N++  + G L     +  + L +N +  I  +DF        
Sbjct: 235 SLANT---PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 206 LDSLKMLDISHNLLTTLE 223
             S   + +  N +   E
Sbjct: 292 KASYSGVSLFSNPVQYWE 309

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 8e-22
 Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 36/190 (18%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
            ++ +    F  L  ++  L L+KN L+             P      L+      N++ 
Sbjct: 87  KISKISPGAFAPLV-KLERLYLSKNQLK-----------ELPEKMPKTLQELRVHENEIT 134

Query: 108 --------GVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
                   G+  +  ++L  N +++    +GA  G+  LS + ++   + TI        
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--- 191

Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
               ++ EL L  N+I  +   +L G++ L++L LS N +  +          L+ L ++
Sbjct: 192 ---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 216 HNLLTTLEET 225
           +N L  +   
Sbjct: 249 NNKLVKVPGG 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L LQ+N+I  + DG    +  L  L L +NK+  ISP  F  L     +  L L 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL---VKLERLYLS 108

Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            N+++ L   +     L  L +  N++  +    F GL+ + ++++  N L +
Sbjct: 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + + N+  L L +N+I  +  GA   +  L RL LS N+L+ +       L       EL
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ------EL 126

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDISHNLLTTL 222
           ++  NEI  +      G++ +  ++L  N L++  I    F G+  L  + I+   +TT+
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 41/166 (24%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  + + + + L   +  L L+ N++                 +L N         ++ 
Sbjct: 203 KITKVDAASLKGLN-NLAKLGLSFNSIS-----------AVDNGSLANT-------PHLR 243

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           EL L +N++  + G L     +  + L +N +  I  +DF                    
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP----------------- 286

Query: 174 NLDGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDISHN 217
              G        S + L  N ++   I P  F  +     + + + 
Sbjct: 287 ---GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
           L  +  S   L  + P D        +   L LQ+N+I  + DG    +  L  L L +N
Sbjct: 33  LRVVQCSDLGLEKV-PKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           K+  ISP  F  L  L+ L +S N L  L E
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELPE 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
               ++ EL+L  N +  +  GA   +  L  L L  N+L+ I    F GL   +N+ +L
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL---SNLTKL 109

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            +  N+I  L D     ++ L  L++  N L  IS   F GL+SL+ L +    LT++  
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

Query: 225 TS 226
            +
Sbjct: 170 EA 171

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           T    L L  N I+ L+         L  L+L+ N +  + P  F  L ++     L L+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR---TLGLR 88

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N ++ +  G   G+  L++LD+S NK+  +    F  L +LK L++  N L  +  
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 26/188 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPID------VCAPPSTLD 100
           +L  +  + F  L   +  L L K NL   P  A      L  +             +  
Sbjct: 139 DLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 101 NLKNQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
            L         +  L++ H   ++ +    +    L+ L ++H  L  +       L   
Sbjct: 198 RL-------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--- 247

Query: 160 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
             +  L L +N I  +    L  +  L  + L   +L  + P  F GL+ L++L++S N 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 219 LTTLEETS 226
           LTTLEE+ 
Sbjct: 308 LTTLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 14/175 (8%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
           NL  +P++    L   ++ L+L   N+    D +      L+ +++   P  LD +    
Sbjct: 163 NLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNC 220

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
               N+  L + H  +  +   A+  +  L  L+LS+N + TI       L  +    E+
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ---EI 277

Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
           +L   ++  ++  A  G++ L  L++S N+L T+    F  + +L+ L +  N L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L+I+     D  +      GL + +L +T  NL              P   + +L    
Sbjct: 204 VLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLT-----------AVPYLAVRHL---- 247

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                +  L L +N I  +    L  +  L  + L   +L  + P  F GL+ +     L
Sbjct: 248 ---VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR---VL 301

Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLR 196
            +  N++  L+      +  L  L L  N L 
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCA------PPSTLDNLKNQ 105
            L  +       L     +  ++ N L       A+  +D                L   
Sbjct: 176 RLTHVDLSLIPSL----FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-- 229

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                    LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +     +  L
Sbjct: 230 --------ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM---QRLERL 277

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
            + +N +  L+     I  L  LDLSHN L  +   +    D L+ L + HN + TL+ +
Sbjct: 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLS 336

Query: 226 S 226
           +
Sbjct: 337 T 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
           P + LD+          +  L L   +IE +D  A    H + +L +  N +R + P  F
Sbjct: 61  PAALLDSF-------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113

Query: 154 IGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
             +  +T    L L+ N++ +L  G       L+ L +S+N L  I  D F    SL+ L
Sbjct: 114 QNVPLLT---VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 213 DISHNLLTTLE 223
            +S N LT ++
Sbjct: 171 QLSSNRLTHVD 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.5 bits (212), Expect = 9e-20
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 33/172 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           NL  +   TFQ     + NL+L+ N L                S + +L           
Sbjct: 152 NLERIEDDTFQATT-SLQNLQLSSNRLT-----------HVDLSLIPSLF---------- 189

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
              + +N +  L   +     +  LD SHN +  +     + L        LKLQHN + 
Sbjct: 190 HANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELT------ILKLQHNNLT 239

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           +    L+   GL  +DLS+N+L  I    F+ +  L+ L IS+N L  L   
Sbjct: 240 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            N   +  +++ +  L    L     +  L+L+  ++  I    F        I +L + 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTIQKLYMG 101

Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N I  L       +  L+ L L  N L ++    F     L  L +S+N L  +E+
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 27/183 (14%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            +    S +  LP+        Q+  L L    +                          
Sbjct: 49  IVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEE-----------IDTYAFAYA---- 92

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                I +L +  N I  L       +  L+ L L  N L ++    F        +  L
Sbjct: 93  ---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT---PKLTTL 146

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            + +N +E + D        L  L LS N+L  +         SL   ++S+NLL+TL  
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAI 203

Query: 225 TSK 227
              
Sbjct: 204 PIA 206

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 30/175 (17%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGA-----ALRPIDVCA------PPSTLDNL 102
           ++N +      EL      LKL  NNL           L  +D+               +
Sbjct: 216 SINVVRGPVNVEL----TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 103 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
                    +  L + +N +  L+     I  L  LDLSHN L  +  +          +
Sbjct: 272 -------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRL 320

Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
             L L HN I  L  +    H L  L LSHN     S        ++    +   
Sbjct: 321 ENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVT--NIFELKLQHNEIENL-DGALMGIHGLSRLDLS 191
                     +   + D + G + +T  N   +  +++ +  L    L     +  L+L+
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 192 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             ++  I    F    +++ L +  N +  L  
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 10/184 (5%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV- 106
             +A ++L    S  + +      N+ L   ++   G            + +   +    
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--GNGWTVDITGNFSNAISKSQAFSL 236

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIH--GLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
               +I       + I++ D     G+    +  LDLSH  + +++   F  L  +    
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK--- 293

Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            L L +N+I  + D A  G+  L  L+LS+N L  +   +F GL  +  +D+  N +  +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 223 EETS 226
           ++ +
Sbjct: 354 QDQT 357

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.2 bits (224), Expect = 4e-21
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 14/180 (7%)

Query: 47  SLKIAVSNLNDLPSKTFQEL--GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN 104
            L ++ +      +  F       Q  +L L  +++   G     I      +T   L  
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILA-HHIMGAGFGFHNIKDP-DQNTFAGLAR 265

Query: 105 QVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
                +++  L L H  + +L+      +  L  L+L++NK+  I+ + F GLD++    
Sbjct: 266 -----SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ--- 317

Query: 164 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            L L +N +  L      G+  ++ +DL  N +  I    F  L+ L+ LD+  N LTT+
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.8 bits (202), Expect = 4e-18
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
           + +  +++  +  +TF+ L  ++  L L  N L         I        +    N++ 
Sbjct: 343 IDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKLV 394

Query: 108 GVTNIF----ELKLQHNEIENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
            +  I      + L  N +ENLD       +  L  L L+ N+  + S D         +
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPS 452

Query: 162 IFELKLQHNEIENLD------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
           + +L L  N ++             G+  L  L L+HN L ++ P  F  L +L+ L ++
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 216 HNLLTTLEETS 226
            N LT L    
Sbjct: 513 SNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 107 QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
             +  +  L+L            A   +  L  LDL  +K+  + PD F GL  +    E
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF---E 101

Query: 165 LKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLT 220
           L+L    + +    DG    +  L+RLDLS N++R++     F  L+SLK +D S N + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 221 TLEETS 226
            + E  
Sbjct: 162 LVCEHE 167

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSVTNIFE 164
           Q +     L L  N I  +   +   +  L  L+L       TI  + F  L    N+  
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL---PNLRI 77

Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTT 221
           L L  ++I  L   A  G+  L  L L    L    +    F  L +L  LD+S N + +
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 222 LEE 224
           L  
Sbjct: 138 LYL 140

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 70  IVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DG 127
           +  + LT N +      L  +D+      + +L+           L L  N   +   D 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQ----------ILILNQNRFSSCSGDQ 445

Query: 128 ALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIFELKLQHNEIENLD-GALMGIHG 184
                  L +L L  N L+     +      + ++++  L L HN + +L  G    +  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           L  L L+ N+L  +S +D     +L++LDIS N L       
Sbjct: 506 LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 6e-16
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 28/180 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  + + +F  L  Q+  L+L                         NL        N+ 
Sbjct: 35  YIRTVTASSFPFLE-QLQLLELGSQYTPLT----------IDKEAFRNL-------PNLR 76

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHN 170
            L L  ++I  L   A  G+  L  L L    L    +    F  L     +  L L  N
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL---KALTRLDLSKN 133

Query: 171 EIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLLTTLEETS 226
           +I +L    +   ++ L  +D S N++  +   +   L   +L    ++ N L +     
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 49/212 (23%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--------- 104
            +  L    FQ L   +  L+L    L          D         NLK          
Sbjct: 84  KIYFLHPDAFQGLF-HLFELRLYFCGLS---------DAVLKDGYFRNLKALTRLDLSKN 133

Query: 105 ---------QVQGVTNIFELKLQHNEIENL-DGALMGIHG--LSRLDLSHNKLRTISPDD 152
                        + ++  +    N+I  + +  L  + G  LS   L+ N L +    D
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 153 FIGLDSV---TNIFELKLQHNEIENL-------------DGALMGIHGLSRLDLSHNKLR 196
           +    +      +  L +  N                    +L+  H +       + ++
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 197 TISPDDFIGLD--SLKMLDISHNLLTTLEETS 226
               + F GL   S++ LD+SH  + +L    
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L +  +  +             +  L L +N L+         +        + L    
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ------LAWETELCWDVFEGL---- 479

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
              +++  L L HN + +L  G    +  L  L L+ N+L  +S +D        N+  L
Sbjct: 480 ---SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA-----NLEIL 531

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHN 217
            +  N++   +        LS LD++HNK         FI   +   + I+  
Sbjct: 532 DISRNQLLAPN--PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 57  DLPSKTFQELGLQIVNLKLTKNNLR--PDG----AALR-------PIDVCAPPSTLDNLK 103
              S++       +  L L+ N +            L         +   +  S   +L 
Sbjct: 68  GCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 125

Query: 104 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTN 161
                  N+  L + H       +G   G+  L  L ++ N       PD F  L    N
Sbjct: 126 ------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RN 176

Query: 162 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           +  L L   ++E L   A   +  L  L++SHN   ++    +  L+SL++LD S N + 
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 221 TLEE 224
           T ++
Sbjct: 237 TSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 6e-20
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L  +P+            L+L  N L+             P    D L       T + 
Sbjct: 18  GLTSVPTGIPSSA----TRLELESNKLQS-----------LPHGVFDKL-------TQLT 55

Query: 114 ELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
           +L L  N +        +  G   L  LDLS N + T+   +F+GL+ +     L  QH+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE---HLDFQHS 111

Query: 171 EIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            ++ +      + +  L  LD+SH   R      F GL SL++L ++ N    
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 8e-19
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 107 QGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
            G++++  LK+  N   EN        +  L+ LDLS  +L  +SP  F  L S+     
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ---V 203

Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHN 217
           L + HN   +LD      ++ L  LD S N + T    +      SL  L+++ N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD---GALMGIHGLSRLDL 190
             +RL+L  NKL+++    F  L  +T   +L L  N +        +  G   L  LDL
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLT---KLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           S N + T+   +F+GL+ L+ LD  H+ L  + E S
Sbjct: 86  SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS 120

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 54  NLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           +     +  F  L  L++  LK+  N+                P     L        N+
Sbjct: 137 HTRVAFNGIFNGLSSLEV--LKMAGNSF------QENF----LPDIFTEL-------RNL 177

Query: 113 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
             L L   ++E L   A   +  L  L++SHN   ++    +  L    ++  L    N 
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNH 234

Query: 172 IENL-DGALMGI-HGLSRLDLSHNKLR 196
           I       L      L+ L+L+ N   
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 53  SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           S   +     F EL   +  L L++  L               P+  ++L       +++
Sbjct: 161 SFQENFLPDIFTELR-NLTFLDLSQCQLE-----------QLSPTAFNSL-------SSL 201

Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
             L + HN   +LD      ++ L  LD S N + T    +       +++  L L  N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQN 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 54  NLNDLPSKTFQELGL-QIVNLKLTKNNLRPDGAALR-------------PIDVCAPPSTL 99
            L+     ++ +LG   + +L L+ N      A                 +      S  
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
            +L         +  L + +   +   DG  +G+  L+ L ++ N  +  +  +     +
Sbjct: 421 LSL-------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FAN 471

Query: 159 VTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            TN+  L L   ++E +  G    +H L  L++SHN L  +    +  L SL  LD S N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 218 LLTTLEETS 226
            + T +   
Sbjct: 532 RIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           ++   + L  N ++ L   +      L  LDLS  ++ TI    + GL    ++  L L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL---HHLSNLILT 88

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            N I++   G+  G+  L  L     KL ++       L +LK L+++HN + + +
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
              +  N        + +  L L   EIE ++  A  G+H LS L L+ N +++ SP  F
Sbjct: 48  KSYSFSNF-------SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 154 IGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKM 211
            GL S+     L     ++ +L    +  +  L +L+++HN + +   P  F  L +L  
Sbjct: 101 SGLTSLE---NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157

Query: 212 LDISHNLLTTLEETS 226
           +D+S+N + T+    
Sbjct: 158 VDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
              +DLS N L+ +    F      + +  L L   EIE ++  A  G+H LS L L+ N
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            +++ SP  F GL SL+ L      L +LE   
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 28/174 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  +  K +  L   + NL LT N ++              P +   L       T++ 
Sbjct: 67  EIETIEDKAWHGLH-HLSNLILTGNPIQ-----------SFSPGSFSGL-------TSLE 107

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L     ++ +L    +  +  L +L+++HN + +     +    ++TN+  + L +N I
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYI 165

Query: 173 ENL-DGALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
           + +    L  +         LD+S N +  I    F G+  L  L +  N  ++
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 53  SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
            NL        + L  + I   +LT  N   D                  L        N
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-----------IVKFHCL-------AN 286

Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           +  + L    I+ L+  +        L +   +L+     D         +  L L  N+
Sbjct: 287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDL------PFLKSLTLTMNK 339

Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDF--IGLDSLKMLDISHNLLTTLEET 225
             ++    + +  LS LDLS N L       +  +G +SL+ LD+S N    +   
Sbjct: 340 G-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 54  NLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           N +++     Q L GL +  L L +     +            PS ++ L +       I
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF-------EPSIMEGLCD-----VTI 263

Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
            E +L +    + D      +  +S + L+   ++ +                L +   +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-----HFKWQSLSIIRCQ 318

Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           ++        +  L  L L+ NK         + L SL  LD+S N L+     S
Sbjct: 319 LKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCS 369

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L I+ +N        F  L   +  LK+  N+ + +             +   N     
Sbjct: 428 YLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNT----------LSNVFANT---- 472

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
              TN+  L L   ++E +  G    +H L  L++SHN L  +    +  L S++    L
Sbjct: 473 ---TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS---TL 526

Query: 166 KLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTI 198
               N IE   G L      L+  +L++N +  I
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
                 KL  +  D        ++   + L  N ++ L   +      L  LDLS  ++ 
Sbjct: 16  YQCMDQKLSKVPDDIP------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           TI    + GL  L  L ++ N + +    S
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
             + L  L+   Q       L +  N I+ + D A  GI  L  L L  N   +      
Sbjct: 169 TVNDLQFLRENPQ---VNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC 224

Query: 154 I----GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSR--LDLSHNKLRTISPDDFIGL 206
           +    GL     I         +E  +   + G+  ++     L++    +     F  L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 207 DSLKMLDISHNLLTTLEE 224
            ++  + ++   +  LE+
Sbjct: 285 ANVSAMSLAGVSIKYLED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 34/185 (18%)

Query: 54  NLNDLPSKTFQ---ELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVT 110
            +  +     Q   E     ++L ++ N +                     +K       
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPID-----------FIQDQAFQGIKLH----- 207

Query: 111 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHN------KLRTISPDDFIGLDSVTNI 162
              EL L+ N      +   L  + GL    L          L    P    GL     I
Sbjct: 208 ---ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD-VTI 263

Query: 163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            E +L +    + D      +  +S + L+   ++ +           + L I    L  
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQ 321

Query: 222 LEETS 226
                
Sbjct: 322 FPTLD 326

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.5 bits (222), Expect = 3e-21
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
           +    L L HN +  L  +     +  L  L LSHN L  IS + F+ +    N+  L L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDL 95

Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             N +  L +     +  L  L L +N +  +  + F  +  L+ L +S N ++    
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.5 bits (222), Expect = 3e-21
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             +TN+  L L HN +  +   A + +  L  LDLS N L T+    F  L     +  L
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL---QALEVL 117

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD---SLKMLDISHNLLTT 221
            L +N I  +   A   +  L +L LS N++     +     +    L +LD+S N L  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 222 LEETS 226
           L  T 
Sbjct: 178 LPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 8e-14
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 43/163 (26%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           +LN + S+ F  +   +  L L+ N+L      L             +L         + 
Sbjct: 75  HLNFISSEAFVPVP-NLRYLDLSSNHLH----TL-------DEFLFSDL-------QALE 115

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L +N I  +   A   +  L +L LS N++     +     + +             
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK----------- 164

Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
                       L  LDLS NKL+ +   D   L +     + 
Sbjct: 165 ------------LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.1 bits (224), Expect = 5e-21
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 107 QGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
           +    +  L L    ++  D       +H L  L+LSH+ L   S   F GL ++     
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ---H 453

Query: 165 LKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           L LQ N     +     +L  +  L  L LS   L +I    F  L  +  +D+SHN LT
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 221 TLEETS 226
           +    +
Sbjct: 514 SSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.2 bits (214), Expect = 8e-20
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 21/175 (12%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
               L ++ F+E   Q+  L L    L+          V    S   NL         + 
Sbjct: 387 EPLSLKTEAFKEC-PQLELLDLAFTRLK----------VKDAQSPFQNL-------HLLK 428

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L H+ ++   +    G+  L  L+L  N     +      L ++  +  L L   ++
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 173 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            ++D  A   +  ++ +DLSHN+L + S +    L  +  L+++ N ++ +  + 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 36/202 (17%)

Query: 47  SLKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK-- 103
                  +  D+    F+ L  + + ++ L K+                  +T       
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-----------SSNTFHCFSGL 280

Query: 104 -------NQVQGVTNIF-------ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRT- 147
                    +  + +         +L L  N+ ENL   +      L+ L +  N  R  
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFI 204
           +       L    N+ EL L H++IE  D     L  +  L  L+LS+N+  ++  + F 
Sbjct: 341 LGTGCLENL---ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 205 GLDSLKMLDISHNLLTTLEETS 226
               L++LD++   L   +  S
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L+   N +  +       +  L+ LDL+  ++  I  D F        +  L L 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ---HRLDTLVLT 89

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            N +  + + AL G   L  L      + +I         +L+ L +  N +++++   
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
             +T   L        N+  L L   +I  + +      H L  L L+ N L  ++    
Sbjct: 49  QNTTFSRL-------INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101

Query: 154 IGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
            G  ++     L      I ++    L     L  L L  N + +I        + LK+L
Sbjct: 102 SGPKALK---HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 213 DISHNLLTTLEETS 226
           D  +N +  L +  
Sbjct: 159 DFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 14/179 (7%)

Query: 54  NLNDLPSKTFQEL-GLQIVNLKLTKNNLRP------DGAALRPIDVCAPPSTLDNLKNQV 106
            ++ L  +    L     ++L L  N++        D A  + ++     + L   K   
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHG---LSRLDLSHNKLRTISPDDFIGLDSVTNI 162
              + +++    +  + E++  A+        +  ++L  +    IS + F      + +
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF---SGL 280

Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            EL L    +  L   L+G+  L +L LS NK   +         SL  L I  N    
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 21/174 (12%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           +++ +          ++  L    N +                  + +L+          
Sbjct: 140 HISSIKLPKGFPTE-KLKVLDFQNNAIH-----------YLSKEDMSSLQQ-----ATNL 182

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
            L L  N+I  ++           L+    +   +         ++ +++    +  + E
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDE 241

Query: 174 NLDGALMGIHG---LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           ++  A+        +  ++L  +    IS + F     L+ LD++   L+ L  
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 7e-21
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
               L   +F  +   +  L L +  L+         +V + PS    L        N+ 
Sbjct: 441 KYLQLTRNSFALVP-SLQRLMLRRVALK---------NVDSSPSPFQPL-------RNLT 483

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG-----LDSVTNIFELKL 167
            L L +N I N++   L G+  L  LDL HN L  +      G     L  ++++  L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 168 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           + N  + +       +  L  +DL  N L T+    F    SLK L++  NL+T++E+  
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 27/177 (15%)

Query: 54  NLNDLPSKTFQELGL-QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           +L  L ++TF  L    +  L LTKN +                     L        ++
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKI-----------ESDAFSWL-------GHL 407

Query: 113 FELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
             L L  NEI          G+  +  + LS+NK   ++ + F  +    ++  L L+  
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---PSLQRLMLRRV 464

Query: 171 EIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            ++N+D        +  L+ LDLS+N +  I+ D   GL+ L++LD+ HN L  L +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 25/179 (13%)

Query: 57  DLPSKTFQELGL-QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115
            L  K   EL    I NL L+ + L                +T   LK      TN+  L
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLST-----------TSNTTFLGLKW-----TNLTML 253

Query: 116 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT------NIFELKLQ 168
            L +N +  + + +   +  L    L +N ++ +      GL +V       +  +  + 
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
              +  +D  +   +  L  L++  N +  I  + F GL +LK L +S++  +    T+
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 4e-18
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 21/177 (11%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L+     T  +L   +  L L+ N ++                 LD   N     +++ 
Sbjct: 132 GLSSTKLGTQVQLE-NLQELLLSNNKIQ-----------ALKSEELDIFAN-----SSLK 174

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
           +L+L  N+I+    G    I  L  L L++ +L     +      + T+I  L L ++++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 173 ENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
                     +    L+ LDLS+N L  +  D F  L  L+   + +N +  L   S
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           TNI  L L HN++  L          L+ LD+  N +  + P+    L     +  L LQ
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL---PMLKVLNLQ 81

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           HNE+  L D        L+ L L  N ++ I  + F+   +L  LD+SHN L++ +  +
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 5e-17
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 23/176 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--QVQGVTN 111
           NLN + + +F  L  Q+    L  NN++                +L  L N   +    +
Sbjct: 259 NLNVVGNDSFAWLP-QLEYFFLEYNNIQ-----------HLFSHSLHGLFNVRYLNLKRS 306

Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
             +  +    +  +D  +   +  L  L++  N +  I  + F GL    N+  L L ++
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL---INLKYLSLSNS 363

Query: 171 -----EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
                 + N     +    L  L+L+ NK+  I  D F  L  L++LD+  N +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)

Query: 54  NLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           N+  L S +   L  ++ +NLK +        A+L  I       +   L         +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI----DDFSFQWL-------KCL 331

Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSVTNIFELKLQH 169
             L ++ N+I  +      G+  L  L LS++    RT++ + F+ L   + +  L L  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTK 390

Query: 170 NEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           N+I  +   A   +  L  LDL  N++ + ++  ++ GL+++  + +S+N    L   S
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           Q +  +  L LQHNE+  L D        L+ L L  N ++ I  + F+   ++     L
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI---TL 126

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF--IGLDSLKMLDISHNLLTTL 222
            L HN + +   G  + +  L  L LS+NK++ +  ++       SLK L++S N +   
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 223 EETS 226
               
Sbjct: 187 SPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
               D SH KL  +  D        TNI  L L HN++  L          L+ LD+  N
Sbjct: 6   HEVADCSHLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            +  + P+    L  LK+L++ HN L+ L + +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 22/164 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
           N+ ++     + L  ++  L L  NNL        P         L +L       N   
Sbjct: 491 NIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 108 GV--------TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
            +          +  + L  N +  L          L  L+L  N + ++    F    +
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPA 607

Query: 159 VTNIFELKLQHNEIENLDGALMGIHGLSR-LDLSHNKLRTISPD 201
             N+ EL ++ N     D     I      ++ +H  +  +S  
Sbjct: 608 FRNLTELDMRFN---PFDCTCESIAWFVNWINETHTNIPELSSH 648

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.4 bits (219), Expect = 2e-20
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCA------PPSTLDNLKNQ 105
            L  +       L     +  ++ N L       A+  +D                L   
Sbjct: 182 RLTHVDLSLIPSL----FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-- 235

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                    LKLQHN + +    L+   GL  +DLS+N+L  I    F+ +  +     L
Sbjct: 236 --------ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE---RL 283

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
            + +N +  L+     I  L  LDLSHN L  +   +    D L+ L + HN + TL+ +
Sbjct: 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLS 342

Query: 226 S 226
           +
Sbjct: 343 T 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 2e-19
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
           P + LD+          +  L L   +IE +D  A    H + +L +  N +R + P  F
Sbjct: 67  PAALLDSF-------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 154 IGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
             +  +T    L L+ N++ +L  G       L+ L +S+N L  I  D F    SL+ L
Sbjct: 120 QNVPLLT---VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 213 DISHNLLTTLE 223
            +S N LT ++
Sbjct: 177 QLSSNRLTHVD 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.7 bits (204), Expect = 1e-18
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            N   +  +++ +  L    L     +  L+L+  ++  I    F        I +L + 
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTIQKLYMG 107

Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N I  L       +  L+ L L  N L ++    F     L  L +S+N L  +E+
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 33/172 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           NL  +   TFQ     + NL+L+ N L                S + +L           
Sbjct: 158 NLERIEDDTFQATT-SLQNLQLSSNRLT-----------HVDLSLIPSLF---------- 195

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
              + +N +  L   +     +  LD SHN +  +     + L        LKLQHN + 
Sbjct: 196 HANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELT------ILKLQHNNLT 245

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           +    L+   GL  +DLS+N+L  I    F+ +  L+ L IS+N L  L   
Sbjct: 246 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 27/183 (14%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            +    S +  LP+        Q+  L L    +      +                   
Sbjct: 55  IVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIE----EI-------DTYAFAYA---- 98

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                I +L +  N I  L       +  L+ L L  N L ++    F        +  L
Sbjct: 99  ---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT---PKLTTL 152

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            + +N +E + D        L  L LS N+L  +         SL   ++S+NLL+TL  
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAI 209

Query: 225 TSK 227
              
Sbjct: 210 PIA 212

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 3e-15
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 32/165 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           ++N +      EL      LKL  NNL                         +     + 
Sbjct: 222 SINVVRGPVNVEL----TILKLQHNNLTDTAW--------------------LLNYPGLV 257

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
           E+ L +NE+E +     + +  L RL +S+N+L  +       +     +  L L HN +
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI---PTLKVLDLSHNHL 313

Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +++        L  L L HN + T+         +LK L +SHN
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 39/207 (18%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCA----- 94
            L +    + ++ +  F      I  L +  N +R  P         L  + +       
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 95  -PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD 152
            P     N          +  L + +N +E + D        L  L LS N+L  +    
Sbjct: 138 LPRGIFHNT-------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

Query: 153 FIGLDSV-------------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 199
              L                  + EL   HN I  + G +     L+ L L HN L   +
Sbjct: 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTA 248

Query: 200 PDDFIGLDSLKMLDISHNLLTTLEETS 226
               +    L  +D+S+N L  +    
Sbjct: 249 --WLLNYPGLVEVDLSYNELEKIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVT--NIFELKLQHNEIENL-DGALMGIHGLSRLDLS 191
                     +   + D + G + +T  N   +  +++ +  L    L     +  L+L+
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 192 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             ++  I    F    +++ L +  N +  L  
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 25/181 (13%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L+I  + +  +P   F  L   +  +++  N L          +    P   D LK   
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLE---------NSGFEPGAFDGLKLNY 176

Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
                   L++   ++  +   L     L+ L L HNK++ I  +D +    +     L 
Sbjct: 177 --------LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY---RLG 223

Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           L HN+I  + +G+L  +  L  L L +NKL  + P     L  L+++ +  N +T +   
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 226 S 226
            
Sbjct: 283 D 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 37/190 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
            ++ +  K F  L  ++  L ++KN+L              PP+   +L       N+++
Sbjct: 89  KISKIHEKAFSPLR-KLQKLYISKNHLV-----------EIPPNLPSSLVELRIHDNRIR 136

Query: 108 --------GVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
                   G+ N+  +++  N +EN     GA  G+  L+ L +S  KL  I  D     
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP--- 192

Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
                + EL L HN+I+ +    L+    L RL L HN++R I       L +L+ L + 
Sbjct: 193 ---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 216 HNLLTTLEET 225
           +N L+ +   
Sbjct: 250 NNKLSRVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L LQ+N+I  L      G+  L  L L +NK+  I    F  L  +    +L + 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ---KLYIS 110

Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
            N +  +   L     L  L +  N++R +    F GL ++  +++  N L 
Sbjct: 111 KNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +G+ +++ L L +N+I  + + A   +  L +L +S N L  I P+    L       EL
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV------EL 128

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTTL 222
           ++  N I  +  G   G+  ++ +++  N L      P  F GL  L  L IS   LT +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  +  +       ++  L L  N +R                +L  L         + 
Sbjct: 204 KIQAIELEDLLRYS-KLYRLGLGHNQIR-----------MIENGSLSFL-------PTLR 244

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL---DSVTNIFELKLQHN 170
           EL L +N++  +   L  +  L  + L  N +  +  +DF  +           + L +N
Sbjct: 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 171 EIENLD---GALMGIHGLSRLDLSHNK 194
            +   +        +     +   + K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
           L  +  S   L+ + P +        +   L LQ+N+I  L      G+  L  L L +N
Sbjct: 35  LRVVQCSDLGLKAV-PKEIS-----PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           K+  I    F  L  L+ L IS N L  +  
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
             S     K           + L +N+I  L D        +  LDL  N++ T++  + 
Sbjct: 115 SCSRGQGKK----------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
               S   +  L LQ+N I ++    +    L  LDLS NKL  +   +F     +  + 
Sbjct: 165 AA--SSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWIS 220

Query: 214 ISHNLLTTLEET 225
           + +N L  +E+ 
Sbjct: 221 LRNNKLVLIEKA 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           N++ +     Q       N+ L  N +                             + + 
Sbjct: 110 NISRVSCSRGQGK----KNIYLANNKIT-----------MLRDLDEGCR-------SRVQ 147

Query: 114 ELKLQHNEIENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
            L L+ NEI+ ++ A +      L  L+L +N +  +             +  L L  N+
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-----AKLKTLDLSSNK 202

Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           +  +        G++ + L +NKL  I         +L+  D+  N     
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 8e-18
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--- 104
            K+  S+L    +   Q     +  L L+ N L                + L        
Sbjct: 15  EKVTDSSLKQALASLRQSAW-NVKELDLSGNPLS-----------QISAADLAPFTKLEL 62

Query: 105 ------------QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
                        ++ ++ +  L L +N ++ L         +  L  ++N +  +S   
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR 118

Query: 153 FIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLK 210
             G         + L +N+I  L D        +  LDL  N++ T++  +     D+L+
Sbjct: 119 GQGKK------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 211 MLDISHNLLTTLEETS 226
            L++ +N +  ++   
Sbjct: 173 HLNLQYNFIYDVKGQV 188

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
                 K+  + ++            +  LDLS N L  IS  D      L++L++S N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 219 LTTLEE 224
           L    +
Sbjct: 70  LYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
           ++ +A + +  L          ++  L L  N +         ++     ++ D L+   
Sbjct: 124 NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDT-------VNFAELAASSDTLEHLN 175

Query: 104 ---NQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
              N +  V        +  L L  N++  +        G++ + L +NKL  I      
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK---- 231

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
            L    N+    L+ N                   ++   ++ ++  +        +   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 215 SHNLLTTLEE 224
                  L  
Sbjct: 292 GAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
                ++ + L+           ++K LD+S N L+ +    
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD 53

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
           L  +  + Q    +  + L++N++  ++ AL     L   DL  N     +  DF     
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-- 260

Query: 159 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
             N     +    ++ L G       +  L           P  F      +++ + H+
Sbjct: 261 --NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
            +  +  L L HN++++L      +  L+ LD+S N+L ++      GL     + EL L
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYL 131

Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           + NE++ L  G L     L +L L++N L  +      GL++L  L +  N L T+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L L  N +       LM    L++L+L   +L  +  D      ++  +  L L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLS 85

Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           HN++++L      +  L+ LD+S N+L ++      GL  L+ L +  N L TL  
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
              T + +L L   E+  L      +  L  LDLSHN+L+++ P     L     +  L 
Sbjct: 52  MPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQTL---PALTVLD 106

Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           +  N + +L  GAL G+  L  L L  N+L+T+ P        L+ L +++N LT L  
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L      T      ++  L L +  L      L+         TLD   NQ+Q +  + 
Sbjct: 42  LLYTFSLATLMPYT-RLTQLNLDRAELT----KLQVDGTLPVLGTLDLSHNQLQSLPLLG 96

Query: 114 -------ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                   L +  N + +L  GAL G+  L  L L  N+L+T+ P           + +L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL---TPTPKLEKL 153

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L +N +  L  G L G+  L  L L  N L TI    F G   L    +  N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 8e-19
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           +  + +   G+  +  L  QH+ ++ +      + +  L  LD+SH   R      F GL
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 157 DSVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
              +++  LK+  N  +   L      +  L+ LDLS  +L  +SP  F  L SL++L++
Sbjct: 445 ---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 215 SHNLLTTLEE 224
           + N L ++ +
Sbjct: 502 ASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 5e-18
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L L  N + +L   +      L  LDLS  +++TI    +  L   +++  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            N I++L  GA  G+  L +L      L ++       L +LK L+++HNL+ + 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 9e-18
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             + N+  L + H       +G   G+  L  L ++ N  +     D      + N+  L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 475

Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L   ++E L   A   +  L  L+++ N+L+++    F  L SL+ + +  N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
              LDLS N LR +    F        +  L L   EI+ + DGA   +  LS L L+ N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            +++++   F GL SL+ L      L +LE 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 29/180 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L  L S +F     ++  L L++  ++                   +L       +++ 
Sbjct: 39  PLRHLGSYSFFSF-PELQVLDLSRCEIQ-----------TIEDGAYQSL-------SHLS 79

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L  N I++L  GA  G+  L +L      L ++       L ++    EL + HN I
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLI 136

Query: 173 ENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEETS 226
           ++         +  L  LDLS NK+++I   D   L  + +    LD+S N +  ++  +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 19/184 (10%)

Query: 53  SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
            NL        + L  L I   +L   +   D   +   +     S+   +   ++ V +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI-IDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 112 IF------ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                    L+L + +        + +  L RL  + NK         + L S+     L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE---FL 352

Query: 166 KLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            L  N +        +  G   L  LDLS N + T+   +F+GL+ L+ LD  H+ L  +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 411

Query: 223 EETS 226
            E S
Sbjct: 412 SEFS 415

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 152
                + L       +++  LK+  N  +   L      +  L+ LDLS  +L  +SP  
Sbjct: 437 FNGIFNGL-------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 153 FIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
           F  L   +++  L +  N+++++ DG    +  L ++ L  N  
Sbjct: 490 FNSL---SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 35/182 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           NL  L +     L   +  L +  N ++              P    NL       TN+ 
Sbjct: 111 NLASLENFPIGHLK-TLKELNVAHNLIQ----------SFKLPEYFSNL-------TNLE 152

Query: 114 ELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            L L  N+I+++    L  +H +      LDLS N +  I P  F  +     + +L L+
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLR 208

Query: 169 HNEI--ENLDGALMGIHGLSRLDL------SHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           +N      +   + G+ GL    L      +   L         GL +L + +     L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 221 TL 222
             
Sbjct: 269 YY 270

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
              LDLS N LR +    F     L++LD+S   + T+E+ +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 9e-19
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
           L ++ +   +  +K F +         L  +N    G++    +        DN   +  
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF----KDPDNFTFKGL 272

Query: 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
             + +    L  ++I  L          L +L L+ N++  I  + F GL  +    +L 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL---KLN 329

Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           L  N + ++       +  L  LDLS+N +R +    F+GL +LK L +  N L ++ +
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)

Query: 53  SNLNDLPSKTFQELGL-QIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGV 109
           +N  D  + TF+ L    +    L+K+ +                  S   +L+      
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV----------FSHFTDLE------ 302

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
               +L L  NEI  + D A  G+  L +L+LS N L +I    F  L     +  L L 
Sbjct: 303 ----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL---DKLEVLDLS 355

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           +N I  L D + +G+  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 54  NLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQV 106
            +  +  +      G     L+L+   L+         + C  P    ++       N  
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 107 QGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +      F   +   +I++L  +     G S     H   +      F GL++ + +   
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEA-SGVKTC 280

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            L  ++I  L          L +L L+ N++  I  + F GL  L  L++S N L +++ 
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 107 QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
             + ++  LK++      +  +    G+  L  L L +N+   +    F GL    N+  
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL---ANLEV 107

Query: 165 LKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLT 220
           L L    ++           +  L  L L  N ++ I P   F+ +    +LD++ N + 
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 221 TLEE 224
           ++ E
Sbjct: 168 SICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 28/178 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           ++ +L   +F  L   +  LK+ +                   +T   L       +++ 
Sbjct: 41  SIAELNETSFSRLQ-DLQFLKVEQQTPGLV----------IRNNTFRGL-------SSLI 82

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHN 170
            LKL +N+   L  GA  G+  L  L L+   L    +S + F  L S+     L L+ N
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE---MLVLRDN 139

Query: 171 EIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLTTLEE 224
            I+ +      + +     LDL+ NK+++I  +D +        +L +S   L  + E
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSH 192
           ++ +DLS N +  ++   F  L    ++  LK++      +  +    G+  L  L L +
Sbjct: 32  VNYVDLSLNSIAELNETSFSRL---QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLT 220
           N+   +    F GL +L++L ++   L 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 44/194 (22%)

Query: 58  LPSKTFQELGLQIVNLKLTKNNLR---PDGA-----ALRPID------VCAPPSTLDNLK 103
           L    F+ L   +  L L  NN++   P            +D             L N +
Sbjct: 120 LSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178

Query: 104 NQVQGVTNIFELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFI 154
                  +   L+L    +++++         G       ++ LDLS N  +      F 
Sbjct: 179 G-----KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKML 212
              + T I  L L ++                     H   +      F GL+   +K  
Sbjct: 234 DAIAGTKIQSLILSNSYN-------------MGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 213 DISHNLLTTLEETS 226
           D+S + +  L ++ 
Sbjct: 281 DLSKSKIFALLKSV 294

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 155 GLDSV----TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDS 208
           GL  V     ++  + L  N I  L+  +   +  L  L +        I  + F GL S
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 209 LKMLDISHNLLTTLEE 224
           L +L + +N    LE 
Sbjct: 81  LIILKLDYNQFLQLET 96

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           EL      IE +D  L  +     L LS N +  IS      L  + N+  L L  N I+
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRNLIK 83

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            ++        L  L +S+N++ ++S      L +L++L +S+N +T   E
Sbjct: 84  KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGE 132

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
           ++ +   +  +     L L  N IE +   L G+  L  L L  N ++ I       LD+
Sbjct: 37  IEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIE-----NLDA 90

Query: 159 VTN-IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISH 216
           V + + EL + +N+I +L G +  +  L  L +S+NK+      D +  LD L+ L ++ 
Sbjct: 91  VADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 217 NLLTT 221
           N L  
Sbjct: 150 NPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
             + +L        N+  L L  N I+ ++        L  L +S+N++ ++S     G+
Sbjct: 61  EKISSLSGM----ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-----GI 111

Query: 157 DSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKL 195
           + + N+  L + +N+I N      L  +  L  L L+ N L
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.0 bits (200), Expect = 5e-18
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
             S     KN          + L +N+I  L D        +  LDL  N++ T++  + 
Sbjct: 115 SCSRGQGKKN----------IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
                   +  L LQ+N I ++    +    L  LDLS NKL  +   +F     +  + 
Sbjct: 165 AAS--SDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWIS 220

Query: 214 ISHNLLTTLEET 225
           + +N L  +E+ 
Sbjct: 221 LRNNKLVLIEKA 232

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 32/191 (16%)

Query: 36  ALQDRFGNDSI--SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVC 93
           A+ +   N +     K+  S+L    +   Q     +  L L+ N L             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQ----------- 48

Query: 94  APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 153
              + L          T +  L L  N +      L  +  L  LDL++N ++ +     
Sbjct: 49  ISAADLAPF-------TKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVG-- 98

Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
                  +I  L   +N I  +  +     G   + L++NK+  +   D      ++ LD
Sbjct: 99  ------PSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 214 ISHNLLTTLEE 224
           +  N + T+  
Sbjct: 151 LKLNEIDTVNF 161

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           Q   N+ EL L  N +  +    L     L  L+LS N L          L+S++ +  L
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTL 85

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
            L +N ++ L         +  L  ++N +  +S          K + +++N +T L + 
Sbjct: 86  DLNNNYVQELLVG----PSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDL 138

Query: 226 S 226
            
Sbjct: 139 D 139

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 6e-13
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
                ++ + L+              N+ EL L  N +  +    L     L  L+LS N
Sbjct: 12  YKIEKVTDSSLKQALASLRQSA---WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
            L          L +L+ LD+++N +  L     
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 8e-11
 Identities = 22/190 (11%), Positives = 54/190 (28%), Gaps = 24/190 (12%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
           ++ +A + +  L          ++  L L  N +         ++     ++ D L+   
Sbjct: 124 NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDT-------VNFAELAASSDTLEHLN 175

Query: 104 ---NQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
              N +  V        +  L L  N++  +        G++ + L +NKL  I      
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALR 234

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
                 N+    L+ N                   ++   ++ ++  +        +   
Sbjct: 235 FS---QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 215 SHNLLTTLEE 224
                  L  
Sbjct: 292 GAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 3/112 (2%)

Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDS--VTNIFELKLQHNE 171
             +    ++ L G         +           +       L +        L  Q +E
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            E L+           +D    + RT+     +   +   L+     L    
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 27/154 (17%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--- 155
           L  +  + Q    +  + L++N++  ++ AL     L   DL  N     +  DF     
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 156 -----------------LDSVTNIFELKLQHNEIENLDGAL------MGIHGLSRLDLSH 192
                             +  T            E+L          +     + L    
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           ++   +  +        + +D       T+ +  
Sbjct: 323 SETERLECERE-NQARQREIDALKEQYRTVIDQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 22/190 (11%), Positives = 44/190 (23%), Gaps = 17/190 (8%)

Query: 35  DALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCA 94
             L+D F  +     +A   +  L  +  +E  +                          
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV-PTLGHYGAYCCED-----------L 299

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
           P    D L            L  Q +E E L+           +D    + RT+     +
Sbjct: 300 PAPFADRLIAL--KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
              +      L+ +   ++         H      L     +            L++L  
Sbjct: 358 RKQAKI---TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

Query: 215 SHNLLTTLEE 224
                  +  
Sbjct: 415 IVKRYEEMYV 424

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
               EL+L +NE   L   G    +  L +++ S+NK+  I    F   +  + + E+ L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF---EGASGVNEILL 88

Query: 168 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             N +EN+      G+  L  L L  N++  +  D FIGL S+++L +  N +TT+  
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + +  + ++   +N+I ++ +GA  G  G++ + L+ N+L  +    F GL    ++  L
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL---ESLKTL 110

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L+ N I  + + + +G+  +  L L  N++ T++P  F  L SL  L++  N
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
             I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL    ++  L L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---RSLNSLVLY 88

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N+I  L      G+  L  L L+ NK+  +  D F  L +L +L +  N L T+ +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                +  + L +N+I  L   A  G+  L+ L L  NK+  +    F   + + ++  L
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF---EGLFSLQLL 109

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N+I  L   A   +H L+ L L  NKL+TI+   F  L +++ + ++ N
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
           GL  +       I E++L+ N I+ +  GA      L R+DLS+N++  ++PD F GL S
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 209 LKMLDISHNLLTTL 222
           L  L +  N +T L
Sbjct: 82  LNSLVLYGNKITEL 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 90  IDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RT 147
           +   +  S   +L        N+  L + H       +G   G+  L  L ++ N     
Sbjct: 408 LKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL 206
             PD F  L    N+  L L   ++E L   A   +  L  L++SHN   ++    +  L
Sbjct: 461 FLPDIFTEL---RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 207 DSLKMLDISHNLLTTLEETS 226
           +SL++LD S N + T ++  
Sbjct: 518 NSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           S          G T++  L L  N +  +    +G+  L  LD  H+ L+ +S       
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL- 418

Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDI 214
            S+ N+  L + H       +G   G+  L  L ++ N       PD F  L +L  LD+
Sbjct: 419 -SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 215 SHNLLTTL 222
           S   L  L
Sbjct: 478 SQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L L  N + +L   +      L  LDLS  +++TI    +  L   +++  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84

Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            N I++L  GA  G+  L +L      L ++       L +LK L+++HNL+ + +
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
              LDLS N LR +    F        +  L L   EI+ ++ GA   +  LS L L+ N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            +++++   F GL SL+ L      L +LE   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 29/180 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L  L S +F     ++  L L++  ++                   +L       +++ 
Sbjct: 39  PLRHLGSYSFFSF-PELQVLDLSRCEIQ-----------TIEDGAYQSL-------SHLS 79

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L  N I++L  GA  G+  L +L      L ++       L ++    EL + HN I
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLI 136

Query: 173 E--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEETS 226
           +   L      +  L  LDLS NK+++I   D   L  + +    LD+S N +  ++  +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 37/176 (21%), Positives = 53/176 (30%), Gaps = 28/176 (15%)

Query: 53  SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
            NL        + L  L I   +L   +   D                + L       TN
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD----------IIDLFNCL-------TN 283

Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           +    L    IE +        G   L+L + K           L        L    N+
Sbjct: 284 VSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNK 336

Query: 172 IENLDGALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSLKMLDISHNLLTTLEET 225
             N   + + +  L  LDLS N L  +        G  SLK LD+S N + T+   
Sbjct: 337 GGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 24/173 (13%)

Query: 57  DLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115
           ++     Q L GL++  L L +     +             S L+ L N       I E 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-------DKSALEGLCN-----LTIEEF 262

Query: 116 KLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           +L + +   +++      +  +S   L    +  +    +           L+L + +  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-----FGWQHLELVNCKFG 317

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
                 +    L RL  + NK         + L SL+ LD+S N L+     S
Sbjct: 318 QFPTLKLK--SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 17/190 (8%)

Query: 54  NLNDLPSKTFQ---ELGLQIVNLKLTKNNLR--PDGA----ALRPIDVCAPPSTLDNLKN 104
            +  +     +   ++ L  ++L L+ N +     GA     L  + +     +L+ +K 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 105 QVQGVTNIFELKLQHNEIENLD-------GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
            +QG+  +   +L   E  N          AL G+  L+  +     L     D     +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +TN+    L    IE +        G   L+L + K           L  L        
Sbjct: 280 CLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 218 LLTTLEETSK 227
              +  +   
Sbjct: 339 NAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 35/183 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK---------N 104
           +     +  F  L   +  LK+  N+ + +            P     L+          
Sbjct: 432 HTRVAFNGIFNGLS-SLEVLKMAGNSFQENF----------LPDIFTELRNLTFLDLSQC 480

Query: 105 QVQGV--------TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG 155
           Q++ +        +++  L + HN   +LD      ++ L  LD S N + T    +   
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 156 LDSVTNIFELKLQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
               +++  L L  N+          L  I    +L +   ++   +P D  G+  +  L
Sbjct: 541 F--PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSL 597

Query: 213 DIS 215
           +I+
Sbjct: 598 NIT 600

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL---KNQVQ--- 107
            +  +    +Q L   +  L LT N ++    +L  +   +  S+L  L   +  +    
Sbjct: 63  EIQTIEDGAYQSLS-HLSTLILTGNPIQ----SL-ALGAFSGLSSLQKLVAVETNLASLE 116

Query: 108 -----GVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
                 +  + EL + HN I++         +  L  LDLS NK+++I   D   L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 161 NI-FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +   L L  N +  +  GA   I  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +   L L  N + +L   +      L  LDLS  +++TI    +  L   +++  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84

Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N I++L  GA  G+  L +L      L ++       L +LK L+++HNL+ + + 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 29/178 (16%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L  L S +F     ++  L L++  ++     +             +L       +++ 
Sbjct: 39  PLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TI-------EDGAYQSL-------SHLS 79

Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L  N I++L  GA  G+  L +L      L ++       L     + EL + HN I
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLI 136

Query: 173 ENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEE 224
           ++         +  L  LDLS NK+++I   D   L  + +    LD+S N +  ++ 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 25/184 (13%)

Query: 53  SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPS------------TLD 100
           S +  +P    Q L   +  L L++N +  +          A PS            ++ 
Sbjct: 320 SKVFLVPCSFSQHLK-SLEFLDLSENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
                +  + N+  L +  N    +  +      +  L+LS   +R +            
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------Q 431

Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
            +  L + +N +++     + +  L  L +S NKL+T+          L ++ IS N L 
Sbjct: 432 TLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK 486

Query: 221 TLEE 224
           ++ +
Sbjct: 487 SVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 4e-17
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
           +  LDLS NK+  I   D        N+  L L+ + I  ++  A   +  L  LDLS N
Sbjct: 28  MKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            L ++S   F  L SLK L++  N   TL  TS
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 7e-16
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
             +  L L  N+I  +  G L     L  L L  +++ TI  D F  L    ++  L L 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL---GSLEHLDLS 82

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISH-NLLTTLEET 225
            N + +L       +  L  L+L  N  +T+     F  L +L+ L I +    + +   
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 226 S 226
            
Sbjct: 143 D 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 38/160 (23%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
               L           N+  L L+ + I  ++  A   +  L  LDLS N L ++S   F
Sbjct: 42  GHGDLRAC-------ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 154 IGLDSVTNIFELKLQHNEIENL---------------------------DGALMGIHGLS 186
             L   +++  L L  N  + L                                G+  L+
Sbjct: 95  GPL---SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            L++    LR         +  +  L +  +    L E  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 7e-14
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +N +    F  LG  + +L L+ N+L                S    L       +++ 
Sbjct: 61  RINTIEGDAFYSLG-SLEHLDLSDNHLS-----------SLSSSWFGPL-------SSLK 101

Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQHN 170
            L L  N  + L        +  L  L + +      I   DF GL   T++ EL+++  
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL---TSLNELEIKAL 158

Query: 171 EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            + N    +L  I  +  L L  ++   +       L S++ L++    L   + + 
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 100 DNLKNQVQGVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDF 153
            +  + V  +  +  + ++   I        L      +  + R+ + ++K+  +     
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 154 IGLDSVTNIFELKLQHNEIENL----DGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLD 207
             L    ++  L L  N +                L  L LS N LR++    +  + L 
Sbjct: 331 QHL---KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 208 SLKMLDISHNLLTTLEET 225
           +L  LDIS N    + ++
Sbjct: 388 NLTSLDISRNTFHPMPDS 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 9/185 (4%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L++  +NL            +     KL          +   +        L+  + + 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-LRYILELSEVEF 258

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
              T         +E + + +   +    + RL +    L       +  L     +  +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL---EKVKRI 315

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTT 221
            ++++++  +       +  L  LDLS N +      +        SL+ L +S N L +
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 222 LEETS 226
           +++T 
Sbjct: 376 MQKTG 380

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
           L + +S    L       L   +  L+L   NL        P+ V    S +  L  +  
Sbjct: 177 LTLHLSESAFLLEIFADILS-SVRYLELRDTNLA--RFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
            +T+        NE+  L   ++ +  +   D + N L   +P +   +  +  +  + +
Sbjct: 234 VLTD-----ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 168 QHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
           +   I        L      +  + R+ + ++K+  +       L SL+ LD+S NL+  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 222 L 222
            
Sbjct: 349 E 349

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
            D       +I P           +  L L  N+I  +  G L     L  L L  +++ 
Sbjct: 10  CDGRSRSFTSI-PSGL-----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEE 224
           TI  D F  L SL+ LD+S N L++L  
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSS 91

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 24/176 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           +L+ L S  F  L   +  L L  N  +        + V +    L NL+          
Sbjct: 85  HLSSLSSSWFGPLS-SLKYLNLMGNPYQT-------LGVTSLFPNLTNLQ---------- 126

Query: 114 ELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
            L++ +      +      G+  L+ L++    LR         +    +I  L L  +E
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI---RDIHHLTLHLSE 183

Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
              L +     +  +  L+L    L           +    +       + L + S
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
             +  L + +N +++     + +  L  L +S NKL+T+             +  +K+  
Sbjct: 431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLF-----PVLLVMKISR 482

Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKL 195
           N+++++  G    +  L ++ L  N  
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/189 (12%), Positives = 59/189 (31%), Gaps = 36/189 (19%)

Query: 55  LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
            +++    F  L   +  L++   +LR                +L ++        +I  
Sbjct: 136 FSEIRRIDFAGLT-SLNELEIKALSLR-----------NYQSQSLKSI-------RDIHH 176

Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           L L  +E   L +     +  +  L+L    L           +  + + +L  + + + 
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 174 N--------LDGALMGIHGLSRLDLSHNKLRTISPDD--------FIGLDSLKMLDISHN 217
           +        L   ++ +  +   D + N L   +P +         +   +++ L I   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 218 LLTTLEETS 226
            L     T 
Sbjct: 297 YLFYDLSTV 305

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 38/195 (19%)

Query: 48  LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
           L+I   +L +  S++ + +   I +L L  +                     D L     
Sbjct: 153 LEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESA-----------FLLEIFADIL----- 195

Query: 108 GVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
             +++  L+L+   +       L      S +     +   ++ + F  L  +     L+
Sbjct: 196 --SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LE 252

Query: 167 LQHNEIENLDGALMGIHG-----------------LSRLDLSHNKLRTISPDDFIGLDSL 209
           L   E ++     +G                    + RL +    L       +  L+ +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 210 KMLDISHNLLTTLEE 224
           K + + ++ +  +  
Sbjct: 313 KRITVENSKVFLVPC 327

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 69  QIVNLKLTKNNLRPDGAALRPIDVCAPPS--TLDNLKNQVQGV----TNIFELKLQHNEI 122
           ++  L L+   +R        +  C P +   LD   N +         + EL +  N++
Sbjct: 411 KMRFLNLSSTGIRV-------VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463

Query: 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
           + L  A      L  + +S N+L+++    F  L S+    ++ L  N
Sbjct: 464 KTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ---KIWLHTN 507

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 24/174 (13%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +  + +   Q     +  L LT N +      +          +  +L        ++ 
Sbjct: 63  RITYISNSDLQRCV-NLQALVLTSNGIN----TI-------EEDSFSSL-------GSLE 103

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE- 171
            L L +N + NL       +  L+ L+L  N  +T+          +T +  L++ + + 
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDT 161

Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
              +      G+  L  L++  + L++  P     + ++  L +       L E
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
            +  LDLS+N++  IS  D     ++     L L  N I  ++  +   +  L  LDLS+
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQ---ALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           N L  +S   F  L SL  L++  N   TL ETS
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +N +   +F  LG  + +L L+ N L      L         S    L       +++ 
Sbjct: 87  GINTIEEDSFSSLG-SLEHLDLSYNYLS----NL-------SSSWFKPL-------SSLT 127

Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHN 170
            L L  N  + L        +  L  L + +      I   DF GL  +    EL++  +
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE---ELEIDAS 184

Query: 171 EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           ++++    +L  I  +S L L   +   +         S++ L++    L T   + 
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 25/169 (14%)

Query: 55  LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
              +  K F  L   +  L++  ++L+              P +L ++        N+  
Sbjct: 162 FTKIQRKDFAGLT-FLEELEIDASDLQ-----------SYEPKSLKSI-------QNVSH 202

Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDSVTNIFELKLQ 168
           L L   +   L +  +     +  L+L    L T     +S  +   L        +K+ 
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
              +  +   L  I GL  L+ S N+L+++    F  L SL+ + +  N
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 17/186 (9%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQV----- 106
            L++L S  F+ L   +  L L  N  +   + +    +         +           
Sbjct: 111 YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 107 -QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT--NI 162
             G+T + EL++  +++++    +L  I  +S L L   +   +         SV    +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 163 FELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
            +  L       L      +L+       + ++   L  +       +  L  L+ S N 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQ 288

Query: 219 LTTLEE 224
           L ++ +
Sbjct: 289 LKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
             +  L L +N I  + +  L     L  L L+ N + TI  D F  L S+     L L 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE---HLDLS 108

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHN-LLTTLEE 224
           +N + NL       +  L+ L+L  N  +T+     F  L  L++L + +    T ++ 
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 197
             S   L +I             +  L L +N I  + +  L     L  L L+ N + T
Sbjct: 37  KGSSGSLNSIPSGLT------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90

Query: 198 ISPDDFIGLDSLKMLDISHNLLTTL 222
           I  D F  L SL+ LD+S+N L+ L
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL 115

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 19/153 (12%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN-Q 105
            L+I  S+L     K+ + +   + +L L                       +D   + +
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI-----------LLLEIFVDVTSSVE 225

Query: 106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
              + +        +E+   +  +L+       + ++   L  +       L+ ++ + E
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK----LLNQISGLLE 281

Query: 165 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
           L+   N+++++ DG    +  L ++ L  N   
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 4e-16
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 37  LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPP 96
           LQ+    +   L   +  +  L    +++  LQ  +     + +R               
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK----- 428

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
             L           ++  L L H ++  L   L  +  ++ LDLSHN+LR + P     L
Sbjct: 429 -FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP----AL 482

Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDIS 215
            ++  +  L+   N +EN+DG +  +  L  L L +N+L+  +    +     L +L++ 
Sbjct: 483 AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 216 HNLLTTLEE 224
            N L   E 
Sbjct: 542 GNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIEN 174
           +LQ  E EN    L  I  +  LD    +  T+        +D +   +   L+   +  
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
                M    +  L L+H  L  +   +   L  +  LD+SHN L  L   
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPA 481

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 7e-16
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 31/168 (18%)

Query: 69  QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQV------QGVTNIFELK 116
           + +   L K +          +      + L+++       + +      Q + N+ +L 
Sbjct: 22  ETIKDNLKKKS----------VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 71

Query: 117 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD 176
           L  N++ ++   L  +  L  L L  NK++ +S      L  +  +  L L+HN I +++
Sbjct: 72  LNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGISDIN 125

Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           G L+ +  L  L L +NK+  I+      L  L  L +  N ++ +  
Sbjct: 126 G-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           + +  L      +T +  L L+ N+I ++   L G+  L  L LS N +  +       L
Sbjct: 144 TDITVLSR----LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-----L 193

Query: 157 DSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
             + N+  L+L   E  N        +   + +  +   L   +P+        +  ++ 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVK 251

Query: 216 HNLLTTLEETS 226
            +L     E S
Sbjct: 252 WHLPEFTNEVS 262

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 44/239 (18%)

Query: 7   PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
              C C     S  V  C+        V  +      ++I L+  ++ L  +    F   
Sbjct: 4   HRICHC-----SNRVFLCQ-----ESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF 53

Query: 67  GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK----------NQVQ--------G 108
           G  +  +++++N++      L  I          NL           N +          
Sbjct: 54  G-DLEKIEISQNDV------LEVI----EADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102

Query: 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELK 166
           + N+  L + +  I++L D   +       LD+  N  + TI  + F+GL        L 
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILW 160

Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           L  N I+ + + A  G          +N L  +  D F G     +LDIS   + +L  
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKL 167
            N  EL+    ++  +  GA  G   L ++++S N  L  I  D F  L     + E+++
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL---PKLHEIRI 86

Query: 168 QH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEE 224
           +  N +  +   A   +  L  L +S+  ++ +     I      +LDI  N+ + T+E 
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 225 TS 226
            S
Sbjct: 147 NS 148

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLS 191
               L     KLR I    F G   +    ++++  N++  +        +  L  + + 
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLE---KIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 192 H-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
             N L  I+P+ F  L +L+ L IS+  +  L +  K
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 26/168 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
           NL  +  + FQ L   +  L ++   ++             P     +            
Sbjct: 91  NLLYINPEAFQNLP-NLQYLLISNTGIK-----------HLPDVHKIHS-------LQKV 131

Query: 114 ELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
            L +Q N  I  +   + +G+   S  L L+ N ++ I    F G             +N
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL---SDNN 188

Query: 171 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +E L      G  G   LD+S  ++ ++       L  L+     + 
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
             + +LKL +N+IE + +        +  L  SHNKL+ I         SV  +  +   
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK--SVYVMGSVDFS 652

Query: 169 HNEIENLDGALMGIHG------LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           +N+I +    +            S + LS+N+++    + F     +  + +S+NL+T++
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 223 EE 224
            E
Sbjct: 713 PE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 38/187 (20%)

Query: 54  NLNDLPSKTFQELG----LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGV 109
            +          +     +    + L+ N ++             P              
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-----------KFPTELFATG------- 696

Query: 110 TNIFELKLQHNEIENL--------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
           + I  + L +N + ++        DG     + L+ +DL  NKL ++S D      ++  
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--FRATTLPY 754

Query: 162 IFELKLQHNEIENLDGALMGIHGLSRLDLSH------NKLRTISPDDFIGLDSLKMLDIS 215
           +  + + +N   +     +    L    + H      N++    P       SL  L I 
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 216 HNLLTTL 222
            N +  +
Sbjct: 815 SNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 40/189 (21%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
            + ++P         Q+  L  + N L+  P+    +         ++  +         
Sbjct: 606 QIEEIPEDFCAFTD-QVEGLGFSHNKLKYIPNIFNAK---------SVYVMG-------- 647

Query: 112 IFELKLQHNEIENLDGALMGIHG------LSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
              +   +N+I +    +            S + LS+N+++    + F      + I  +
Sbjct: 648 --SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG---SPISTI 702

Query: 166 KLQHNEIENL--------DGALMGIHGLSRLDLSHNKLRTISPD-DFIGLDSLKMLDISH 216
            L +N + ++        DG     + L+ +DL  NKL ++S D     L  L  +D+S+
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762

Query: 217 NLLTTLEET 225
           N  ++    
Sbjct: 763 NCFSSFPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            +   P++ F      I  + L+ N +              P ++L       +    + 
Sbjct: 684 EIQKFPTELFATGS-PISTIILSNNLMT-----------SIPENSLKPKDGNYKNTYLLT 731

Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
            + L+ N++ +L  D     +  LS +D+S+N   +  P   +     + +    ++H  
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNS---SQLKAFGIRHQR 787

Query: 172 IEN-------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
                         +     L +L +  N +R +          L +LDI+ N   +++ 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK---LTPQLYILDIADNPNISIDV 844

Query: 225 TS 226
           TS
Sbjct: 845 TS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 99  LDNLKNQVQGVTNIFELKLQH-NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI--- 154
            +N +     + ++ +++L +   +  L   L  +  L  L+++ N+  + +        
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 155 ---GLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
                D+   I    + +N +E      +L  +  L  LD  HNK+R +    F     L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKL 597

Query: 210 KMLDISHNLLTTL 222
             L + +N +  +
Sbjct: 598 TDLKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 41  FGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLD 100
           FG++ ++  ++    + +     +        L L+  +L  D     P        +  
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS--DLLQDAINRNPEMKPIKKDSRI 423

Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
           +LK+         ++    N I  +  A+  +  L  +  +++     +        +V 
Sbjct: 424 SLKDT--------QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-------AVD 468

Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
                     + EN + +   +  L+ ++L +    T  PD    L  L+ L+I+ N   
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

Query: 221 TLEE 224
           +  +
Sbjct: 529 SAAQ 532

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 30/138 (21%)

Query: 114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L     +  +  A+  +  L  L    +   T+S   F   +   ++ E +     +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTIS----------------------------PDDFI 204
                 L     L+  DL  + +                                     
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 205 GLDSLKMLDISHNLLTTL 222
            L  L+++  +++  T  
Sbjct: 446 RLTKLQIIYFANSPFTYD 463

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           ++ L L+    +   PD    L  LK+L    +  T    
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            +  +L LQ N++ +L   A   +  L  L L+ NKL+T+    F  L ++     L + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE---TLWVT 93

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            N+++ L  G    +  L+ L L  N+L+++ P  F  L  L  L + +N L +L +
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L+ LPSK F  L  ++  L L  N L+     L       P      L        N+ 
Sbjct: 48  KLSSLPSKAFHRLT-KLRLLYLNDNKLQ----TL-------PAGIFKEL-------KNLE 88

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L +  N+++ L  G    +  L+ L L  N+L+++ P  F  L   T +  L L +NE+
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYNEL 145

Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           ++L  G    +  L  L L +N+L+ +    F  L  LK L + +N L  +
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 96  PSTLDNLK---NQVQ--------GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 143
           P+    L    N++          +T +  L L  N+++ L  G    +  L  L ++ N
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 144 KLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD 202
           KL+ +    F  L    N+ EL+L  N++++L       +  L+ L L +N+L+++    
Sbjct: 96  KLQALPIGVFDQL---VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 203 FIGLDSLKMLDISHNLLTTLEE 224
           F  L SLK L + +N L  + E
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 155 GLDSV-TNIF----ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
            L ++ +NI     +L LQ N++ +L   A   +  L  L L+ NKL+T+    F  L +
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86

Query: 209 LKMLDISHNLLTTL 222
           L+ L ++ N L  L
Sbjct: 87  LETLWVTDNKLQAL 100

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           +LDL  NKL ++    F  L  L++L ++ N L TL   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 9e-15
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           T +  LK+ +N+I +L   L  +  L+ L++  N++  I+      +  +T +  L +  
Sbjct: 221 TRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-----VKDLTKLKMLNVGS 274

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           N+I ++   L  +  L+ L L++N+L     +   GL +L  L +S N +T +   + 
Sbjct: 275 NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           + +  L++  N+I +++  +  +  L  L++  N++  IS      L++++ +  L L +
Sbjct: 243 SQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNN 296

Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           N++ N D   + G+  L+ L LS N +  I P     L  +   D ++ ++ 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 104 NQVQGVTNIFELK------LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
           NQ+  ++ +  L       +  N+I ++  AL  +  L  L L+ + +  ISP     L 
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-----LA 129

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           ++T ++ L L  N   +    L  + GL+ L ++ +K++ ++P     L  L  L +++N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 218 LLTTLEE 224
            +  +  
Sbjct: 188 QIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 8e-12
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
                  LQ   + ++      +  +++L ++  K+ +I       ++ +TN+  L L  
Sbjct: 22  AEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNG 75

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           N+I ++   L  +  L+ L +  NK+  IS      L +L+ L ++ + ++ +  
Sbjct: 76  NQITDIS-PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
            L      I  +      +    R  L    +  +        + + +I +L +   ++ 
Sbjct: 4   TLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT-----QEELESITKLVVAGEKVA 57

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           ++ G +  +  L  L+L+ N++  ISP     L  L  L I  N +T +  
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 27/174 (15%)

Query: 55  LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
           L  L S +F  L  ++ ++++           L  I     P  L  L         +  
Sbjct: 68  LQQLESHSFYNLS-KVTHIEIRNTRN------LTYI----DPDALKEL-------PLLKF 109

Query: 115 LKLQHNEIENL--DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHNE 171
           L + +  ++       +        L+++ N  + +I  + F GL + T    LKL +N 
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET--LTLKLYNNG 167

Query: 172 IENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDS-LKMLDISHNLLTTL 222
             ++   A  G   L  + L+ NK L  I  D F G+ S   +LD+S   +T L
Sbjct: 168 FTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENLD-GALMGIHGLSRLDLS 191
               L L    LRTI    F  L +++    + +  +  ++ L+  +   +  ++ +++ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNIS---RIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 192 HNK-LRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           + + L  I PD    L  LK L I +  L    + +K
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 38/224 (16%), Positives = 85/224 (37%), Gaps = 37/224 (16%)

Query: 7   PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
              C+C         V C+ +     +  + Q        +LK+  ++L  +PS  F  L
Sbjct: 5   SPPCEC--HQEEDFRVTCKDIQRIPSLPPSTQ--------TLKLIETHLRTIPSHAFSNL 54

Query: 67  GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHN-EIENL 125
              I  + ++ +        L+ +       +  NL       + +  +++++   +  +
Sbjct: 55  P-NISRIYVSIDV------TLQQL----ESHSFYNL-------SKVTHIEIRNTRNLTYI 96

Query: 126 D-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENL-DGALMGI 182
           D  AL  +  L  L + +  L+     D   + S    F L++  N  + ++   A  G+
Sbjct: 97  DPDALKELPLLKFLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 183 HGLSR-LDLSHNKLRTISPDDFIGLDSLKMLDISHN-LLTTLEE 224
              +  L L +N   ++    F G   L  + ++ N  LT +++
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 33/173 (19%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
           NL  +     +EL   +  L +    L+  PD   +                        
Sbjct: 92  NLTYIDPDALKELP-LLKFLGIFNTGLKMFPDLTKVY-------------------STDI 131

Query: 112 IFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
            F L++  N  + ++   A  G+   +  L L +N   ++    F G    T +  + L 
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG----TKLDAVYLN 187

Query: 169 HN-EIENLD-GALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
            N  +  +D  A  G++ G S LD+S   +  +       L  L   + +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN-TWTL 239

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 110 TNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
             +  L L +N+I  +     G    +  L  +HNKL+ I         SV+ +  +   
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK--SVSVMSAIDFS 410

Query: 169 HNEIE--------NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           +NEI          LD        +S ++LS+N++     + F     L  +++  N+LT
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 221 TL 222
            +
Sbjct: 471 EI 472

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 16/88 (18%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
           +  + + +N L+T   +  +    +  +  L+  +N++E    A      L+ L+L++N+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364

Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
           +  I  +     + ++ L  +HN L  +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
             I  + + +N ++    + +L  +  L  L+  +N+L       F        +  L L
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSE---IKLASLNL 360

Query: 168 QHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEET 225
            +N+I  +     G    +  L  +HNKL+ I        +  +  +D S+N + +++  
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 226 S 226
           +
Sbjct: 421 N 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDD 152
           P ++L +     +    +  + L+ N++  L  D     +  L  +DLS+N      P  
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQ 531

Query: 153 FIGLDSVTNIFELKLQHNEIE---NLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIG 205
            +     + +    +++                +     L++L +  N +R +  +    
Sbjct: 532 PLNS---STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKI-- 585

Query: 206 LDSLKMLDISHNLLTTLEETS 226
             ++ +LDI  N   +++ + 
Sbjct: 586 TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 46  ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ 105
           +S +                   +     L K+ +        P       S+   LK+ 
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDF-SDLIKDCIN-----SDPQQKSIKKSSRITLKDT 186

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                   ++    N I  +  A+M +  L +  + ++     +  +    ++     + 
Sbjct: 187 --------QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           K +  + +NL         L+ +++ +    T  P     L  +++++++ N   + E+
Sbjct: 239 KTEDLKWDNL-------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 7/112 (6%), Positives = 29/112 (25%), Gaps = 3/112 (2%)

Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175
             + NE       +       +        +    D     +  +++ +  +  +  +  
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY-DPREDFSDLIKDCINSDPQQKS 174

Query: 176 DGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
                 I    +++    N +  +     + L  L+   + ++         
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICE 225

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
           P+   N    ++G     +   Q N         +     L++L +  N +R ++     
Sbjct: 529 PTQPLNSST-LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586

Query: 155 GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 207
                 NI  L ++ N   ++D   +          L ++K + I   D + + 
Sbjct: 587 -----PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)

Query: 93  CAPPSTLDNLKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISP 150
           C     LD+L + + G  N+ EL +++   +++L    L G+  L  L +  + LR ++P
Sbjct: 15  CTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 151 DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210
           D F                               LSRL+LS N L ++S     GL SL+
Sbjct: 74  DAFHFTPR--------------------------LSRLNLSFNALESLSWKTVQGL-SLQ 106

Query: 211 MLDISHNLLT 220
            L +S N L 
Sbjct: 107 ELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.1 bits (158), Expect = 1e-12
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 133 HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDL 190
           HG S L  + +           G     N+ EL +++   +++L    L G+  L  L +
Sbjct: 8   HGSSGLRCTRDGALDS-LHHLPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             + LR ++PD F     L  L++S N L +L  
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            +I  L L   +I ++   L G+  L  L L  N++  ISP     L  +TN+  L + +
Sbjct: 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGN 160

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
            ++ +L   L  +  L+ L    NK+  ISP     L +L  + + +N ++ +   + 
Sbjct: 161 AQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 9/118 (7%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           VQ + N+  L+L+ N+I +L   L  +  ++ L+LS N L+ +S      +  + +I  L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-----IAGLQSIKTL 112

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            L   +I ++   L G+  L  L L  N++  ISP    GL +L+ L I +  ++ L 
Sbjct: 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           + G+TN+  L + + ++ +L   L  +  L+ L    NK+  ISP     L S+ N+ E+
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-----LASLPNLIEV 200

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
            L++N+I ++   L     L  + L++  +          L    ++             
Sbjct: 201 HLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 226 S 226
           S
Sbjct: 260 S 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +Q + N+ +L L  N++ ++   L  +  L  L L  NK++ +S      L  +  +  L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSL 117

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            L+HN I +++G L+ +  L  L L +NK+  I+      L  L  L +  N ++ + 
Sbjct: 118 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV 172

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           S ++ L +       +  L L +N+I ++   L  +  L  L L  N++  I P     L
Sbjct: 125 SDINGLVHL----PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----L 174

Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
             +T +  L L  N I +L   L G+  L  L+L   +      +    L     +  + 
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 217 NLLTTLEETS 226
             L T E  S
Sbjct: 234 GSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           E       I+ +           + +L    +           + + +I ++   +++I+
Sbjct: 6   ETITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIK 59

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           ++ G +  +  +++L L+ NKL  I P     L +L  L +  N +  L 
Sbjct: 60  SVQG-IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLS 106

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 26/115 (22%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
             +  L+     I+++DG +  ++ L++++ S+N+L  I+P     L ++T + ++ + +
Sbjct: 46  DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 99

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           N+I ++   L  +  L+ L L +N++  I P     L +L  L++S N ++ +  
Sbjct: 100 NQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           T +  L +  N++ ++   L  +  L  L  ++N++  I+P     L  +TN+ EL L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNG 230

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           N+++++   L  +  L+ LDL++N++  ++P    GL  L  L +  N ++ +  
Sbjct: 231 NQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           T + ELKL  N+I N+   L G+  L+ L+L+ N+L  ISP     + ++ N+  L L  
Sbjct: 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYF 318

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           N I ++   +  +  L RL   +NK+  +S      L ++  L   HN ++ L   + 
Sbjct: 319 NNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           TN+  L L +N+I ++D  L  +  L+RL+LS N +  IS      L  +T++ +L   +
Sbjct: 112 TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGN 165

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
              +     L  +  L RLD+S NK+  IS      L +L+ L  ++N ++ +  
Sbjct: 166 QVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 117 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD 176
            Q   I  +      +    +  L    +             +  +  L+     I+++D
Sbjct: 9   TQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSID 62

Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
           G +  ++ L++++ S+N+L  I+P     L  L  + +++N +  +   + 
Sbjct: 63  G-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            N+  L L  N I ++   +  +  L RL   +NK+  +S      L ++TNI  L   H
Sbjct: 309 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLSAGH 362

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           N+I +L   L  +  +++L L+         +    +     +      L     
Sbjct: 363 NQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           V  +T +  L   +N++ ++   L  +  ++ L   HN++  ++P     L ++T I +L
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP-----LANLTRITQL 380

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEE 224
            L      N          +S  +   N    +     I    S    DI+ NL +   E
Sbjct: 381 GLNDQAWTNAPVNYKA--NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438

Query: 225 TS 226
            S
Sbjct: 439 VS 440

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 14/131 (10%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
            +L  ++      TN+ EL L HN+I +L   L  +  L  L ++ N+L+ ++       
Sbjct: 54  QSLAGMQFF----TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--- 105

Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
                +  L L +NE+ + D  L+ +  L  L + +NKL++I       L  L++LD+  
Sbjct: 106 ---ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHG 159

Query: 217 NLLTTLEETSK 227
           N +T     ++
Sbjct: 160 NEITNTGGLTR 170

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            N  +  L    + +L      + G+   +  ++ +++++     G+   TN+ EL L H
Sbjct: 19  ANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSH 72

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           N+I +L   L  +  L  L ++ N+L+ ++    I    L  L + +N L   +
Sbjct: 73  NQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTD 122

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
           S L  LK+    +T + EL +  N ++NL+G  +    LSRL L +N+LR         L
Sbjct: 76  SDLSPLKD----LTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTDS-----L 124

Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
             + N+  L +++N+++++   L  +  L  LDL  N++          L  +  +D++ 
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTG 181

Query: 217 NLLTTLEET 225
                    
Sbjct: 182 QKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
             L+ + +       +  L L +NE+ + D  L+ +  L  L + +NKL++I       L
Sbjct: 98  KNLNGIPS-----ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM-----L 146

Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
             ++ +  L L  NEI N  G L  +  ++ +DL+  K      +       L + +   
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQK---CVNEPVKYQPELYITNTVK 202

Query: 217 NL 218
           + 
Sbjct: 203 DP 204

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 25/181 (13%)

Query: 47  SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            L IA ++  +   +  +     +  L L+ N    +    R +     P     L+   
Sbjct: 153 VLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGE----RGLISALCPLKFPTLQ--- 204

Query: 107 QGVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
                   L L++  +E   G           L  LDLSHN LR  +       D  + +
Sbjct: 205 -------VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQL 255

Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
             L L    ++ +   L     LS LDLS+N+L          L  +  L +  N     
Sbjct: 256 NSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLDS 311

Query: 223 E 223
           E
Sbjct: 312 E 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 20/182 (10%)

Query: 58  LPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPS----TLDNLK------NQVQ 107
            P    +  G  +  L L   +     A L  +     P     ++           QV+
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170

Query: 108 GVTNIFELKLQHNEIENLDG-----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
               +  L L  N      G       +    L  L L +  + T S        +   +
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 163 FELKLQHNEIENLDGALMGIHG--LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
             L L HN + +  GA        L+ L+LS   L+ +          L +LD+S+N L 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287

Query: 221 TL 222
             
Sbjct: 288 RN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDG---------ALMGIHGLSRLDLSHNKLRT 147
             +D   +  Q    I  L L+   +               ++GI GL  L L + ++  
Sbjct: 50  KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIH-----GLSRLDLSHNKLRTISPDD 202
            +P   +      ++  L L++      D  L  +      GL  L ++       S + 
Sbjct: 110 TAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 203 FIGLDSLKMLDISHNLLTT 221
                +L  LD+S N    
Sbjct: 169 VRVFPALSTLDLSDNPELG 187

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 110 TNIFELKLQHNEIENLDGALMGIH-----GLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
            ++  L L++      D  L  +      GL  L ++       S +      +++    
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS---T 177

Query: 165 LKLQHNEIENLDG-----ALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISH 216
           L L  N      G       +    L  L L +  + T S            L+ LD+SH
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 217 NLLTTLEETS 226
           N L       
Sbjct: 238 NSLRDAAGAP 247

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL 195
            L++S N +  +   D + L  +     L + HN I+ LD         L  LDLSHNKL
Sbjct: 25  ILNISQNYISELWTSDILSLSKLR---ILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
             IS        +LK LD+S N    L    
Sbjct: 82  VKISCH---PTVNLKHLDLSFNAFDALPICK 109

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 48  LKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
            ++         S  ++    + I N  ++   +             +P   LD   N +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLL 336

Query: 107 Q--------GVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIG 155
                     +T +  L LQ N+++ L         +  L +LD+S N +          
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-- 394

Query: 156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
                ++  L +  N + +     L     +  LDL  NK+++I P   + L++L+ L++
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNV 451

Query: 215 SHNLLTTLEE 224
           + N L ++ +
Sbjct: 452 ASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
            L D   +    L  ++  L L  N L                  L  +      + ++ 
Sbjct: 335 LLTDTVFENCGHLT-ELETLILQMNQL----------------KELSKIAEMTTQMKSLQ 377

Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           +L +  N +      G       L  L++S N L                I  L L  N+
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSNK 432

Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           I+++   ++ +  L  L+++ N+L+++    F  L SL+ + +  N
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             ++ +  L + HN I+ LD         L  LDLSHNKL  IS    + L        L
Sbjct: 42  LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLK------HL 95

Query: 166 KLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            L  N  + L        +  L  L LS   L   S      L+  K+L +        E
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 224 E 224
           +
Sbjct: 156 D 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIF 163
           ++ +  ++   + +  I N+   L G       D S   L+ +S    +        +  
Sbjct: 238 IRILQLVWHTTVWYFSISNV--KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 164 ELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
                +  I+N                I     LD S+N L     ++   L  L+ L +
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 215 SHNLLTTLEETSK 227
             N L  L + ++
Sbjct: 356 QMNQLKELSKIAE 368

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            ++ EL L  N+   +   L     L+ +DLS+N++ T+S   F    ++T +  L L +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF---SNMTQLLTLILSY 87

Query: 170 NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           N +  +      G+  L  L L  N +  +    F  L +L  L I  N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 155 GLDSV-----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
           GL  +      ++ EL L  N+   +   L     L+ +DLS+N++ T+S   F  +  L
Sbjct: 21  GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 210 KMLDISHNLLTTL 222
             L +S+N L  +
Sbjct: 81  LTLILSYNRLRCI 93

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 7e-12
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 24/137 (17%)

Query: 96  PSTLDNLK------NQVQ----GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 145
           P     L+      NQ+       + +++L   +N + +L        GL  L +S N+L
Sbjct: 177 PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRL 233

Query: 146 RTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 205
            ++           + + EL +  N + +L    M   GL  L +  N+L  + P+  I 
Sbjct: 234 TSLPV-------LPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLTRL-PESLIH 282

Query: 206 LDSLKMLDISHNLLTTL 222
           L S   +++  N L+  
Sbjct: 283 LSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            +I  L +  N + +L         L  L++S N+L ++ P    GL     +       
Sbjct: 61  AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVLPPGL---LELSIFSNPL 113

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
             +  L        GL +L +  N+L ++          L+ L +S N L +L
Sbjct: 114 THLPAL------PSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 32/190 (16%)

Query: 39  DRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDG-AALRPIDVCAP 95
           D       +L I  +NL  LP+        ++  L+++ N L   P     L  + +   
Sbjct: 57  DCLPAHITTLVIPDNNLTSLPA----LPP-ELRTLEVSGNQLTSLPVLPPGLLELSI--- 108

Query: 96  PSTLDNLKNQVQGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
                N    +  + + + +L +  N++ +L        GL  L +S N+L ++ P    
Sbjct: 109 ---FSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PALPS 161

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
            L        L   +N++ +L    M   GL  L +S N+L ++          L  L  
Sbjct: 162 ELCK------LWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL----PSELYKLWA 208

Query: 215 SHNLLTTLEE 224
            +N LT+L  
Sbjct: 209 YNNRLTSLPA 218

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
                L +  + +  L   L     ++ L +  N L ++             +  L++  
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP-------ALPPELRTLEVSG 90

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           N++ +L     G+  LS        L  +          L  L I  N LT+L
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           + + EL +  N + +L         L  L +S N+L ++           + +  L +  
Sbjct: 221 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLP-------MLPSGLLSLSVYR 270

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
           N++  L  +L+ +   + ++L  N L   +      + S 
Sbjct: 271 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.4 bits (146), Expect = 6e-11
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
             I  L++  N + +L         L  LD   N+L T+ P+         ++  L + +
Sbjct: 80  PQITVLEITQNALISLPEL---PASLEYLDACDNRLSTL-PELP------ASLKHLDVDN 129

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           N++  L         L  ++  +N+L  +         SL++L + +N LT L E
Sbjct: 130 NQLTMLPEL---PALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPE 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 197
            +  +N +     D F   D            NE  +L    + I+  S L L+   L +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS 73

Query: 198 ISPDDFIGLDSLKMLDISHNLLTTL 222
           + PD+      + +L+I+ N L +L
Sbjct: 74  L-PDNL--PPQITVLEITQNALISL 95

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 26/178 (14%)

Query: 54  NLNDLPSKTFQELGLQIVNLKLTKNNLR---PDGAALRPIDVC-----APPSTLDNLKNQ 105
            L+ LP     EL   + +L +  N L       A L  I+         P    +L+  
Sbjct: 111 RLSTLP-----ELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLE-- 163

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
                    L +++N++  L         L  LD+S N L ++         S       
Sbjct: 164 --------VLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           + + N I ++   ++ +     + L  N L +   +      +           +  +
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 20/113 (17%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            ++  + L +  + +L G +   H +  L +++      +P     +  ++N+  L++  
Sbjct: 44  NSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNP-----ISGLSNLERLRIMG 97

Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            ++ +     L G+  L+ LD+SH+            L  +  +D+S+N   T
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
             L  +   N+  A M  + L+ + L++  +  ++     G++   NI +L + +    N
Sbjct: 28  GLLGQSSTANITEAQM--NSLTYITLANINVTDLT-----GIEYAHNIKDLTINNIHATN 80

Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
            +  + G+  L RL +    + +    +  GL SL +LDISH+   
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           +N+  L++   ++ +     L G+  L+ LD+SH+            L     +  + L 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL---PKVNSIDLS 144

Query: 169 HN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           +N  I ++   L  +  L  L++  + +             L  L      +   +
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 6/107 (5%)

Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
           EL L  NE+  +  DG    +  L +L+L  N+L  I P+ F   +  ++I EL+L  N+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF---EGASHIQELQLGENK 89

Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           I+ + +   +G+H L  L+L  N++  + P  F  L+SL  L+++ N
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
            L L+ N+L  IS D       + ++ +L+L+ N++  +   A  G   +  L L  NK+
Sbjct: 33  ELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 196 RTISPDDFIGLDSLKMLDISHNLLTT 221
           + IS   F+GL  LK L++  N ++ 
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISC 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 155 GLDSV-----TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 207
           GL  +      +  EL L  NE+  +  DG    +  L +L+L  N+L  I P+ F G  
Sbjct: 19  GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78

Query: 208 SLKMLDISHNLLTTL 222
            ++ L +  N +  +
Sbjct: 79  HIQELQLGENKIKEI 93

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 99  LDNLKNQVQGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
            +N    +  +   +  L + +N++E L   L     L  +D+ +N L+ +        D
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP-------D 170

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
              ++  +   +N++E L   L  +  L+ +   +N L+ +         SL+ +   +N
Sbjct: 171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNN 225

Query: 218 LLTTLEE 224
           +L  L E
Sbjct: 226 ILEELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 97  STLDNLKNQVQGVTNIF----ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
             L+   N +  +  +      L +  N    L         L  L+ S N++R++    
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLC--- 313

Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
               D   ++ EL + +N++  L         L RL  S N L  +         +LK L
Sbjct: 314 ----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQL 362

Query: 213 DISHNLLTTLEE 224
            + +N L    +
Sbjct: 363 HVEYNPLREFPD 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
            ++Q +  +  +   +N ++ L         L  L++  N L  +        +   ++ 
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLP-------ELPQSLT 280

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
            L +  N    L         L  L+ S N++R++         SL+ L++S+N L  L 
Sbjct: 281 FLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP 333

Query: 224 ET 225
             
Sbjct: 334 AL 335

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 24/140 (17%)

Query: 98  TLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
              N  ++ +        + +   +  L   L        L+L++  L ++         
Sbjct: 38  EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--RQAHELELNNLGLSSLPE------- 88

Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP---------------DD 202
              ++  L    N +  L      +  L   + +   L  + P                +
Sbjct: 89  LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 203 FIGLDSLKMLDISHNLLTTL 222
                 LK++D+ +N L  L
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 34/146 (23%)

Query: 97  STLDNLKNQVQGVT----NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
           + LD  +N   G++    N++ L    NEI +L         L  L++S+NKL  +    
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIELPA-- 334

Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------ 206
                    +  L    N +  +         L +L + +N LR   PD    +      
Sbjct: 335 -----LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREF-PDIPESVEDLRMN 385

Query: 207 ----------DSLKMLDISHNLLTTL 222
                      +LK L +  N L   
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV----------TNIF 163
           E     + +  +      +   +    + ++    +P        +              
Sbjct: 15  EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           EL+L +  + +L         L  L  S N L  + P+    L SL + + +   L+ L
Sbjct: 75  ELELNNLGLSSLPEL---PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDL 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV-TNIFELKLQHNEIE 173
           +KL    IE              LDL   K+  I       L +       +    NEI 
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIR 55

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            LDG    +  L  L +++N++  I       L  L  L +++N L  L +
Sbjct: 56  KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           EL L+  +I  ++     +     +D S N++R +      G   +  +  L + +N I 
Sbjct: 23  ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-----GFPLLRRLKTLLVNNNRIC 77

Query: 174 NLDGALM-GIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISHNLLTTLEE 224
            +   L   +  L+ L L++N L  +   D +  L SL  L I  N +T  + 
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
           +L LQ   +  L D    G+  L+ L+L +N+L+T+S   F  L   T +  L L +N++
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGTLGLANNQL 95

Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            +L  G    +  L +L L  N+L+++    F  L  LK L ++ N L ++  
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           +G+T +  L L +N+++ L  G    +  L  L L++N+L ++    F   D +T + +L
Sbjct: 56  RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF---DHLTQLDKL 112

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
            L  N++++L  G    +  L  L L+ N+L++I    F  L +L+ L +S N L +
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 24/176 (13%)

Query: 44  DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK 103
           D+  L +  + L  L   TF+ L  ++  L L  N L      L            D+L 
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQL----QTL-------SAGVFDDL- 82

Query: 104 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
                 T +  L L +N++ +L  G    +  L +L L  N+L+++    F   D +T +
Sbjct: 83  ------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF---DRLTKL 133

Query: 163 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            EL+L  N+++++  GA   +  L  L LS N+L+++    F  L  L+ + +  N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
            LDSV      +  +L LQ   +  L D    G+  L+ L+L +N+L+T+S   F  L  
Sbjct: 25  SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84

Query: 209 LKMLDISHNLLTTLEE 224
           L  L +++N L +L  
Sbjct: 85  LGTLGLANNQLASLPL 100

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 18/186 (9%)

Query: 48  LKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
             +            +     + I  L ++            P       + L+  +N  
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF----TFLNFTQNVF 365

Query: 107 Q--------GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
                     +  +  L LQ N ++N     +    +S L+     L +++   +    +
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 159 -VTNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
              +I  L L  N +         +   +  LDL +N++ +I P D   L +L+ L+++ 
Sbjct: 426 WAESILVLNLSSNMLT--GSVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVAS 482

Query: 217 NLLTTL 222
           N L ++
Sbjct: 483 NQLKSV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
                L L  N I  L    +  +  L  L LSHN++R++    F       ++  L + 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVS 108

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTI-SPDDFIGLDSLKMLDISHNLLTTLE 223
           HN ++N+    +     L  LDLS N    +    +F  L  L  L +S      L+
Sbjct: 109 HNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 99  LDNLKNQVQGVTNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRTISPDDF 153
           L N         N+  L+     + +L     D        +  L+LS N L        
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
                   +  L L +N I ++   +  +  L  L+++ N+L+++    F  L SL+ + 
Sbjct: 449 -----PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 214 ISHN 217
           +  N
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 19/190 (10%), Positives = 48/190 (25%), Gaps = 19/190 (10%)

Query: 53  SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
           S   ++       L L  + L            +           TL +++   +    +
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 113 FEL----KLQHNEIENL-----------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
           F+      +++  I NL             +   +  L    + +          +    
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY---S 326

Query: 158 SVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
               +    L  ++   +           + L+ + N            L  L+ L +  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 217 NLLTTLEETS 226
           N L    + +
Sbjct: 387 NGLKNFFKVA 396

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             ++ +  L+L HN I +LD    +    L  LD+SHN+L+ IS           ++  L
Sbjct: 73  SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM------ASLRHL 126

Query: 166 KLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
            L  N+ + L        +  L+ L LS  K R +   D + +  L +  I  +L++
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
            L LS N +  +   D   L  L++L +SHN + +L+ 
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 26/174 (14%)

Query: 55  LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
           +  L    F      +  L ++ N L+     +           + +L+           
Sbjct: 88  IRSLDFHVFLFNQ-DLEYLDVSHNRLQ----NI-------SCCPMASLR----------H 125

Query: 115 LKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
           L L  N+ + L        +  L+ L LS  K R +       L    +   L L    I
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH--LSCILLDLVSYHI 183

Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
           +  +   + I   + L L  +     S    + +++L  L +S+  L       
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           TN+  L    N++ NLD  +  +  L+ L+   NKL  +             +  L    
Sbjct: 85  TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQN------PLLTYLNCAR 136

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           N +  +D  +     L+ LD   NK   I+  D      L  LD S N +T L+
Sbjct: 137 NTLTEID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD 186

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
           V   T + EL    N+       +     L+ LD S NK+  +       +     +  L
Sbjct: 144 VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD------VSQNKLLNRL 196

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
               N I  LD  L     L+ LD S NKL  I   D   L  L   D S N LT L+ +
Sbjct: 197 NCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVS 251

Query: 226 S 226
           +
Sbjct: 252 T 252

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 23/138 (16%)

Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV------ 159
           V  +T +       N +  LD  +  +  L+ L      L  I       L         
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 160 ----------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
                     T ++ L  Q   I  LD  L     L  L L++ +L  +   D      L
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKL 341

Query: 210 KMLDISHNLLTTLEETSK 227
           K L   +  +       K
Sbjct: 342 KSLSCVNAHIQDFSSVGK 359

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 29/133 (21%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
             +  L    N I  LD  L     L+ LD S NKL  I       +  +T +       
Sbjct: 191 KLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV 242

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTI-------------------SPDDFIGLDSLK 210
           N +  LD  +  +  L+ L      L  I                      D      L 
Sbjct: 243 NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 211 MLDISHNLLTTLE 223
           +LD     +T L+
Sbjct: 301 LLDCQAAGITELD 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
           L  LD     +  +       L     +  L L + E+  LD  +     L  L   +  
Sbjct: 299 LYLLDCQAAGITELD------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350

Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           ++  S      + +L     +     T+ +
Sbjct: 351 IQDFSS--VGKIPALNNNFEAEGQTITMPK 378

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
           +++  + +    +  L   +    GL  L L+ N LR + P     L     + EL ++ 
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASL---NRLRELSIRA 159

Query: 170 N--------EIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
                     + + D  G   G+  L  L L    +R++ P     L +LK L I ++ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPL 218

Query: 220 TTL 222
           + L
Sbjct: 219 SAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-N 193
           L  L L    +R++ P     L    N+  LK++++ +  L  A+  +  L  LDL    
Sbjct: 185 LQSLRLEWTGIRSL-PASIANL---QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 194 KLRTISPDDFIGLDSLKMLDISH-NLLTTL 222
            LR   P  F G   LK L +   + L TL
Sbjct: 241 ALRNY-PPIFGGRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQ 168
            N+  LK++++ +  L  A+  +  L  LDL     LR   P  F G      +  L L+
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGR---APLKRLILK 261

Query: 169 H-NEIENLDGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
             + +  L   +  +  L +LDL     L  + P     L +  ++ +  +L   L++
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQ 318

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 35/138 (25%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHN--------EIENLDGALMGIHGLSRLDLSHNKLR- 146
           P +  +             + +  N           NL+        L+ +DLS N L  
Sbjct: 166 PDSYGSFSKLFTS------MTISRNRLTGKIPPTFANLN--------LAFVDLSRNMLEG 211

Query: 147 TISPDDFIGLDSVTNIFELKLQHNEIENLDGA---LMGIHGLSRLDLSHNKLR-TISPDD 202
             S        S  N  ++ L  N   +L      +     L+ LDL +N++  T+ P  
Sbjct: 212 DASVL----FGSDKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQG 263

Query: 203 FIGLDSLKMLDISHNLLT 220
              L  L  L++S N L 
Sbjct: 264 LTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 34/138 (24%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLR-TISP 150
           P  L  +         +  L   +N    L G    ++  +  L  +    N++   I P
Sbjct: 118 PDFLSQI-------KTLVTLDFSYN---ALSGTLPPSISSLPNLVGITFDGNRISGAI-P 166

Query: 151 DDFIGLDSVTNIFELKLQHN--------EIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202
           D +     +     + +  N           NL+        L+ +DLS N L   +   
Sbjct: 167 DSYGSFSKLFTS--MTISRNRLTGKIPPTFANLN--------LAFVDLSRNMLEGDASVL 216

Query: 203 FIGLDSLKMLDISHNLLT 220
           F    + + + ++ N L 
Sbjct: 217 FGSDKNTQKIHLAKNSLA 234

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
            L    +    ++G       L  L L +  L ++S      L  +  + +L+L  N I 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKKLELSENRIF 84

Query: 174 NLDGALMG-IHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISHNLLTTLEE 224
                L   +  L+ L+LS NKL+ IS  + +  L+ LK LD+ +  +T L +
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 3/111 (2%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
              +      +L+        +  L L + K      +         N+  L L +  + 
Sbjct: 5   SSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLI 62

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           ++   L  +  L +L+LS N++          L +L  L++S N L  +  
Sbjct: 63  SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHG----LSRLDLSHNKLR-TISPDDFIGLDSVTNIFE 164
           +      +         G           +  LD+S+N L   I P +   +  +     
Sbjct: 608 STRNPCNITSR---VYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFI--- 660

Query: 165 LKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           L L HN   ++ G     +  + GL+ LDLS NKL    P     L  L  +D+S+N L+
Sbjct: 661 LNLGHN---DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 95  PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL-----MGIHGLSRLDLSHNKLR-TI 148
           P  TL  +         +  L L  N      G L          L  LDLS N     I
Sbjct: 335 PMDTLLKM-------RGLKVLDLSFN---EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 149 SPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGL 206
            P+  +  +    + EL LQ+N     +   L     L  L LS N L  TI P     L
Sbjct: 385 LPN--LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSL 441

Query: 207 DSLKMLDISHNLLT 220
             L+ L +  N+L 
Sbjct: 442 SKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 132 IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA----LMGIHGLSR 187
           +   +  +++       +   F       ++  L + +N    L G     +  +  L  
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNN---GSMMFLDMSYN---MLSGYIPKEIGSMPYLFI 660

Query: 188 LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 220
           L+L HN +  +I PD+   L  L +LD+S N L 
Sbjct: 661 LNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL--MGIHGLSRLDLSHNKLRTISPDDF 153
              +          T +  L +  N      G +  + +  L  L L+ NK     PD  
Sbjct: 240 SRAISTC-------TELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289

Query: 154 IGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKM 211
            G  +   +  L L  N     +         L  L LS N     +  D  + +  LK+
Sbjct: 290 SG--ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 212 LDISHNLLT 220
           LD+S N  +
Sbjct: 348 LDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA--LMGIHGLSRLDLSH 192
           L  LDLS N +   +   ++  D    +  L +  N    + G   +     L  LD+S 
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSS 209

Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLT 220
           N   T  P       +L+ LDIS N L+
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 110 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSVTNIFELKL 167
             + EL LQ+N     +   L     L  L LS N L  TI P     L   + + +LKL
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSL---SKLRDLKL 449

Query: 168 QHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
             N    L+G     LM +  L  L L  N L    P       +L  + +S+N LT
Sbjct: 450 WLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPD 151
           P TL N        + +  L L  N    L G     L  +  L  L L  N L    P 
Sbjct: 411 PPTLSNC-------SELVSLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 152 DFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSL 209
           + + +     +  L L  N++   +   L     L+ + LS+N+L   I P     L++L
Sbjct: 461 ELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENL 516

Query: 210 KMLDISHNLLT 220
            +L +S+N  +
Sbjct: 517 AILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 114 ELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            + L    +     A    L+ + GL  L LS++ +               ++  L L  
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG----FKCSASLTSLDLSR 109

Query: 170 NEIENLDGALMGIHGLSR------LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 220
           N   +L G +  +  L        L++S N L         + L+SL++LD+S N ++
Sbjct: 110 N---SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 12/126 (9%)

Query: 96  PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFI 154
           P+ L + ++       +  L L  N     +G +   +   S   ++ N +         
Sbjct: 531 PAELGDCRS-------LIWLDLNTN---LFNGTIPAAMFKQS-GKIAANFIAGKRYVYIK 579

Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
                                   L  +   +  +++       +   F    S+  LD+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 215 SHNLLT 220
           S+N+L+
Sbjct: 640 SYNMLS 645

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
           +  L L +++      +     D    +  L   +  + ++   L  ++ L +L+LS N+
Sbjct: 19  VKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNR 75

Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
           +            +L  L++S N +  L  
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
            L    +    L+G       L  L   +  L +I+      L  +  + +L+L  N + 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-----NLPKLNKLKKLELSDNRVS 77

Query: 174 NLDGALM-GIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE 224
                L      L+ L+LS NK++ +S  +    L++LK LD+ +  +T L +
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 72  NLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGV------TNIFELKLQHNEIENL 125
              L K ++          +       +    + ++ V       N+  L L  N++ ++
Sbjct: 23  KANLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 126 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHG 184
             AL  +  L+ L L+ N+L+++    F  L   TN+ EL L  N++++L DG    +  
Sbjct: 79  -SALKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
           L+ L+L+HN+L+++    F  L +L  LD+S+N L +L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           +  L+   + +       ++ + ++  +++ ++++      G+  + N+  L L  N++ 
Sbjct: 23  KANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLH 76

Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
           ++  AL  +  L+ L L+ N+L+++    F  L +LK L +  N L +L 
Sbjct: 77  DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLS---RLDLSHNKLRTISPDDFIGLDSVTNIF 163
             + +I ++   +++I+    ++ GI  L     L L  NKL  IS      L  +TN+ 
Sbjct: 38  NELNSIDQIIANNSDIK----SVQGIQYLPNVRYLALGGNKLHDISA-----LKELTNLT 88

Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
            L L  N++++L +G    +  L  L L  N+L+++    F  L +L  L+++HN L +L
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148

Query: 223 EE 224
            +
Sbjct: 149 PK 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 12/172 (6%)

Query: 57  DLPSKTFQELGLQIVNLKLTKNNLRPDG-AALRPIDVCAPPSTLDNLKNQVQ--GV---- 109
           +L  K+  +   Q     + +         +++ I        L    N++         
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKEL 84

Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
           TN+  L L  N++++L +G    +  L  L L  N+L+++    F   D +TN+  L L 
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF---DKLTNLTYLNLA 141

Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
           HN++++L  G    +  L+ LDLS+N+L+++    F  L  LK L +  N L
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             +TN+ EL L  N++++L DG    +  L+ L+L+HN+L+++    F   D +TN+ EL
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTEL 162

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L +N++++L +G    +  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
            L L+ N +++L +G    +  L++L L  NKL+++    F   + +T++  L L  N++
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF---NKLTSLTYLNLSTNQL 88

Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
           ++L +G    +  L  L L+ N+L+++    F  L  LK L +  N L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             +T++ +L L  N++++L +G    +  L+ L+LS N+L+++    F   D +T + EL
Sbjct: 49  DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF---DKLTQLKEL 105

Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L  N++++L DG    +  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
            LDL  N L+++    F  L S+T   +L L  N++++L +G    +  L+ L+LS N+L
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLT---QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTL 222
           +++    F  L  LK L ++ N L +L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSL 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
           L+L+ N++++L  G    +  L++L LS N+++++    F   D +T +  L L  N+++
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF---DKLTKLTILYLHENKLQ 89

Query: 174 NL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
           +L +G    +  L  L L  N+L+++    F  L SL+ + +  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
           RL+L  NKL+++    F   D +T + +L L  N+I++L DG    +  L+ L L  NKL
Sbjct: 32  RLELESNKLQSLPHGVF---DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 196 RTISPDDFIGLDSLKMLDISHNLL 219
           +++    F  L  LK L +  N L
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQL 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
            L L  N++  + P  F  L ++    EL L  N++  L  G    +  L+ LDL  N+L
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLK---ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTL 222
             +    F  L  LK L +  N LT L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL 127

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
             + N+ EL L  N++  L  G    +  L+ LDL  N+L  +    F   D + ++ EL
Sbjct: 61  DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF---DRLVHLKEL 117

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            +  N++  L   +  +  L+ L L  N+L++I    F  L SL    +  N
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
              SV     TN   L L  N+I  L  G    +  L  L L  N+L  +    F  L  
Sbjct: 30  RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89

Query: 209 LKMLDISHNLLTTLEE 224
           L +LD+  N LT L  
Sbjct: 90  LTVLDLGTNQLTVLPS 105

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 110 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSV 159
             + +L+L++  +     E L   L        L +S+N    I+      L     DS 
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND---INEAGVRVLCQGLKDSP 198

Query: 160 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSL 209
             +  LKL+   +      +L G +     L  L L  NKL       + P        L
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 210 KMLDISHNLLT 220
           + L I    +T
Sbjct: 259 RTLWIWECGIT 269

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 39/175 (22%)

Query: 72  NLKLTKNNLRPDGA-----ALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN-- 124
           +L L  N L P        AL+ + V         L+           +    N +EN  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR----------SIICGRNRLENGS 175

Query: 125 ---LDGALMGIHGLSRLDLSHNKLRTISPDDFI--GLDSVTNIFELKLQHNEI-----EN 174
                        L  + +  N +R    +  +  GL     +  L LQ N         
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL---------DSLKMLDISHNLLT 220
           L  AL     L  L L+      +S      +           L+ L + +N + 
Sbjct: 236 LAIALKSWPNLRELGLNDCL---LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.0
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.45

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.9e-23  Score=163.69  Aligned_cols=197  Identities=26%  Similarity=0.458  Sum_probs=135.4

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      .+..|.|....   ..+.|..     .-...+|..++.+++.|++++|.+..++..+|..++ +|+.|++++|.+.. +.
T Consensus         8 ~~~~C~c~~~~---~~l~~~~-----~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            8 DGGVCSCNNNK---NSVDCSS-----KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             GTCSBEEETTT---TEEECTT-----SCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCT
T ss_pred             CCCCCEeCCCC---CEEEccC-----CCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeCh
Confidence            33446665321   2688866     223345666667899999999999999998899998 99999999999988 76


Q ss_pred             CCCC-----------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253         85 AALR-----------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDD  152 (227)
Q Consensus        85 ~~~~-----------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~  152 (227)
                      ..|.           .+.+..++.      ..+.++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPI------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCT------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCH------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence            6652           233333332      12334567777777777777763 34566777777777777777666555


Q ss_pred             CCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        153 FIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       153 ~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +..+++   |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+..+..+++|+.|++++|++.
T Consensus       153 ~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          153 FDKLTS---LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTT---CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCcc---cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            544444   777777777777665 34566677777777777777776666777777777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=3.2e-23  Score=163.49  Aligned_cols=202  Identities=25%  Similarity=0.411  Sum_probs=147.1

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|....  ...+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus         2 CP~~C~C~~~~--~~~~~c~~-----~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~   73 (285)
T 1ozn_A            2 CPGACVCYNEP--KVTTSCPQ-----QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDA   73 (285)
T ss_dssp             CCTTCEEECSS--SCEEECCS-----SCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECT
T ss_pred             cCCCceECCCC--CeEEEcCc-----CCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCH
Confidence            34447775332  24788876     233344555666899999999999999988888887 99999999999887 55


Q ss_pred             CCCC-----------CCC-CCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCC
Q psy17253         85 AALR-----------PID-VCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD  151 (227)
Q Consensus        85 ~~~~-----------~~~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~  151 (227)
                      ..|.           .+. +..++      +..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.+++.
T Consensus        74 ~~~~~l~~L~~L~l~~n~~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           74 AAFTGLALLEQLDLSDNAQLRSVD------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTTTTCTTCCEEECCSCTTCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhcCCccCCCEEeCCCCCCccccC------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence            5552           222 33331      22344567888888888888876 55677788888888888888877666


Q ss_pred             CCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        152 DFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       152 ~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+..+++   |+.|++++|.++.++. .+..+++|+.|++++|++..+.+..+..+++|+.|++++|.++++|+
T Consensus       148 ~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          148 TFRDLGN---LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             TTTTCTT---CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             HhccCCC---ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            5555555   8888888888887763 46777888888888888887777778888888888888888877764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=7.7e-23  Score=158.55  Aligned_cols=174  Identities=24%  Similarity=0.410  Sum_probs=150.3

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..     .-...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.. ++..|.           
T Consensus        18 ~l~~~~-----~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~-----------   80 (251)
T 3m19_A           18 EVDCQG-----KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFD-----------   80 (251)
T ss_dssp             EEECTT-----CCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTT-----------
T ss_pred             EEecCC-----CCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhc-----------
Confidence            688876     333455666667899999999999999999999998 99999999999987 555543           


Q ss_pred             hchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-  177 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-  177 (227)
                              ++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..+..+.+   |+.|++++|.++.++. 
T Consensus        81 --------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A           81 --------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             --------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTT
T ss_pred             --------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc---ccEEECcCCcCCccCHH
Confidence                    3588999999999999985 56788999999999999999888776666665   9999999999998874 


Q ss_pred             hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      .+..+++|+.|++++|+++.+.+..+..+++|+.|++++|+++.-
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            678899999999999999999888999999999999999998654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=8.5e-23  Score=161.62  Aligned_cols=176  Identities=26%  Similarity=0.379  Sum_probs=125.1

Q ss_pred             eEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcch
Q psy17253         20 IVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPST   98 (227)
Q Consensus        20 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~   98 (227)
                      ..+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.++. +...            
T Consensus        13 ~~l~~~~-----~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~------------   74 (290)
T 1p9a_G           13 LEVNCDK-----RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDG------------   74 (290)
T ss_dssp             CEEECTT-----SCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCT-TCCEEECTTSCCCEEECCS------------
T ss_pred             cEEECCC-----CCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCC-CCCEEECCCCccCcccCCC------------
Confidence            3788866     223345555667899999999999999988999998 99999999999986 3321            


Q ss_pred             hhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253         99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G  177 (227)
Q Consensus        99 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~  177 (227)
                               .+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+++..+..+++   |+.|++++|+++.++ .
T Consensus        75 ---------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~---L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G           75 ---------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNELKTLPPG  142 (290)
T ss_dssp             ---------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---CCEEECTTSCCCCCCTT
T ss_pred             ---------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---CCEEECCCCCCCccChh
Confidence                     245677777777777766666666677777777777777666555555544   777777777776665 3


Q ss_pred             hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .+..+++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+|..
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            345666777777777777766666666677777777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=3.4e-23  Score=159.37  Aligned_cols=205  Identities=20%  Similarity=0.353  Sum_probs=158.3

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCC-C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRP-D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~   83 (227)
                      +|..|.|...  +.+.|.|...       ..+|. ++.+++.|++++|.+..++...|..++ +|+.|++++|+ +.. +
T Consensus         4 cp~~C~C~~~--~~~~v~c~~l-------~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~   72 (239)
T 2xwt_C            4 SSPPCECHQE--EDFRVTCKDI-------QRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLE   72 (239)
T ss_dssp             CSSSCSEEEC--STTEEEECSC-------SSCCC-CCTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEEC
T ss_pred             CCCCCeeCCC--CcceeEccCc-------cccCC-CCCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeC
Confidence            4445777531  2347889762       33444 556899999999999999998899998 99999999997 877 7


Q ss_pred             CCCCCC-CCCCCCcc----hhhchh-hhhcCCCcccEEEccCCCcccccccccCCCCCC---EEEcCCC-cCcccCCCCC
Q psy17253         84 GAALRP-IDVCAPPS----TLDNLK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLS---RLDLSHN-KLRTISPDDF  153 (227)
Q Consensus        84 ~~~~~~-~~l~~~~~----~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~  153 (227)
                      ...|.. ..+..+.-    .+..++ ..+.++++|+.|++++|.++.+|. +..+.+|+   .|++++| .++.+++..+
T Consensus        73 ~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           73 SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccc
Confidence            666622 11221111    112222 234467899999999999999887 88888888   9999999 9999888777


Q ss_pred             CCCCCCCccc-EEEcCCCCCcCchhhhcCCCCCCEEeCCCCc-cccCCccccCCC-CCCCEEEcCCCcCcccCCC
Q psy17253        154 IGLDSVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGL-DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       154 ~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~lp~~  225 (227)
                      ..+.+   |+ .+++++|.++.+|.......+|+.|++++|+ ++.+.+..|..+ ++|+.|++++|.++++|+.
T Consensus       152 ~~l~~---L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          152 QGLCN---ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             TTTBS---SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             cchhc---ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            76666   99 9999999999888544444889999999995 999988889999 9999999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=7.5e-23  Score=162.90  Aligned_cols=204  Identities=24%  Similarity=0.412  Sum_probs=119.4

Q ss_pred             CccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C--
Q psy17253          7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D--   83 (227)
Q Consensus         7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~--   83 (227)
                      |..|.|...     .+.|..     .-...+|..++.++++|++++|.+..++...|..++ +|+.|++++|.+.. .  
T Consensus         2 P~~C~C~~~-----~l~c~~-----~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~   70 (306)
T 2z66_A            2 PSRCSCSGT-----EIRCNS-----KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCC   70 (306)
T ss_dssp             CTTCEEETT-----EEECCS-----SCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEE
T ss_pred             cCCCeeCCC-----EEEcCC-----CCcccCCCCCCCCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCc
Confidence            334566533     788977     233445556666899999999999999998899998 99999999999873 1  


Q ss_pred             CCC-----------CCCCCCCCCcchhhch----------------h--hhhcCCCcccEEEccCCCcccc-cccccCCC
Q psy17253         84 GAA-----------LRPIDVCAPPSTLDNL----------------K--NQVQGVTNIFELKLQHNEIENL-DGALMGIH  133 (227)
Q Consensus        84 ~~~-----------~~~~~l~~~~~~~~~~----------------~--~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~  133 (227)
                      +..           ++.+.+..+|..+..+                .  ..+..+++|+.|++++|.++.+ +..+..++
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  150 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  150 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred             ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence            111           1333333333222111                0  1122344455555555554443 33444455


Q ss_pred             CCCEEEcCCCcCcc-cCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCE
Q psy17253        134 GLSRLDLSHNKLRT-ISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM  211 (227)
Q Consensus       134 ~L~~L~l~~n~l~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~  211 (227)
                      +|+.|++++|.+.. ..+..+..+++   |+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..+..+++|+.
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             CCCEEECCCCccccccchhHHhhCcC---CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            55555555555543 22333333333   66666666666655 345556666666666666666665555666666777


Q ss_pred             EEcCCCcCcccCC
Q psy17253        212 LDISHNLLTTLEE  224 (227)
Q Consensus       212 L~l~~n~l~~lp~  224 (227)
                      |++++|.++++++
T Consensus       228 L~L~~N~l~~~~~  240 (306)
T 2z66_A          228 LDYSLNHIMTSKK  240 (306)
T ss_dssp             EECTTSCCCBCSS
T ss_pred             eECCCCCCcccCH
Confidence            7777766665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.6e-21  Score=156.83  Aligned_cols=208  Identities=21%  Similarity=0.441  Sum_probs=106.3

Q ss_pred             CCCCCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCC
Q psy17253          2 RREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR   81 (227)
Q Consensus         2 ~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~   81 (227)
                      |...++..|.|.-.     .+.|...     -...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.
T Consensus        21 ~~~~cp~~c~c~l~-----~l~~~~~-----~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~   89 (330)
T 1xku_A           21 MGPVCPFRCQCHLR-----VVQCSDL-----GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKIS   89 (330)
T ss_dssp             -CCCCCTTCEEETT-----EEECTTS-----CCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCC
T ss_pred             ccCCCCCCCcCCCe-----EEEecCC-----CccccCccCCCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCC
Confidence            44445555666422     5777652     12233444445666666666666666666666665 6666666666666


Q ss_pred             C-CCCCC-----------CCCCCCCCcchh--------------hch-hhhhcCCCcccEEEccCCCccc---ccccccC
Q psy17253         82 P-DGAAL-----------RPIDVCAPPSTL--------------DNL-KNQVQGVTNIFELKLQHNEIEN---LDGALMG  131 (227)
Q Consensus        82 ~-~~~~~-----------~~~~l~~~~~~~--------------~~~-~~~~~~l~~L~~L~l~~n~l~~---l~~~~~~  131 (227)
                      . .+..|           +.+.+..+|..+              ..+ +..+.++++|+.|++++|.++.   .+..+..
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  169 (330)
T 1xku_A           90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  169 (330)
T ss_dssp             CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence            5 44333           233343333211              011 1123344555555555555432   1333444


Q ss_pred             CCCCCEE---------------------EcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEe
Q psy17253        132 IHGLSRL---------------------DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLD  189 (227)
Q Consensus       132 l~~L~~L---------------------~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~  189 (227)
                      +++|+.|                     ++++|.++...+..+..+++   |+.|++++|.++.++ ..+..+++|+.|+
T Consensus       170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN---LAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT---CCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCC---CCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            4444444                     44444444443333333333   666666666665554 3455556666666


Q ss_pred             CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +++|+++.+ |..+..+++|+.|++++|.++++|+
T Consensus       247 L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          247 LNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             CCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCcCccC-ChhhccCCCcCEEECCCCcCCccCh
Confidence            666666655 4455566666666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=1.1e-21  Score=164.35  Aligned_cols=200  Identities=23%  Similarity=0.416  Sum_probs=135.4

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|....   ..+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. ++
T Consensus        46 Cp~~C~C~~~~---~~v~c~~-----~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~  116 (452)
T 3zyi_A           46 CPSVCSCSNQF---SKVVCTR-----RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEV  116 (452)
T ss_dssp             CCTTSEECSSS---CEEECCS-----SCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECT
T ss_pred             CCCCCEECCCC---cEEEECC-----CCcCccCCCCCCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcCh
Confidence            33347775322   2688876     333445566666888888888888888888888887 88888888888887 65


Q ss_pred             CCC-----------CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-c------------------------
Q psy17253         85 AAL-----------RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-A------------------------  128 (227)
Q Consensus        85 ~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~------------------------  128 (227)
                      ..|           +.|.+..++..      .+.++++|+.|++++|.++.++. .                        
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  190 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPSG------AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG  190 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCTT------TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             hhccCcccCCEEECCCCcCCccChh------hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence            555           33334433321      12335666666666666655532 3                        


Q ss_pred             -ccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCC
Q psy17253        129 -LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL  206 (227)
Q Consensus       129 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~  206 (227)
                       |..+++|+.|++++|.++.++  .+   ..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..|..+
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~--~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKDMP--NL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSSCC--CC---TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hccCCCCCCEEECCCCcccccc--cc---cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence             444455555555555555442  12   2334478888888888766 4667788888899999888888888888889


Q ss_pred             CCCCEEEcCCCcCcccCCC
Q psy17253        207 DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp~~  225 (227)
                      ++|+.|++++|.++++|+.
T Consensus       266 ~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTT
T ss_pred             CCCCEEECCCCcCCccChH
Confidence            9999999999999888864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=3.2e-22  Score=173.29  Aligned_cols=178  Identities=23%  Similarity=0.344  Sum_probs=151.9

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..     .-+..+|..++..+++||+++|.|+.+++.+|..++ +|+.|++++|.+.. ++.+|..          
T Consensus        35 ~~~c~~-----~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~----------   98 (635)
T 4g8a_A           35 TYQCME-----LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQS----------   98 (635)
T ss_dssp             EEECTT-----SCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTT----------
T ss_pred             EEECCC-----CCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcC----------
Confidence            789977     334556777888999999999999999999999998 99999999999998 7777753          


Q ss_pred             hchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc--h
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--D  176 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~  176 (227)
                               +++|++|+|++|+++.+| ..|..+.+|++|++++|.++.+++..++.+++   |+.|++++|.++.+  |
T Consensus        99 ---------L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~---L~~L~Ls~N~l~~~~~~  166 (635)
T 4g8a_A           99 ---------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLP  166 (635)
T ss_dssp             ---------CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred             ---------CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc---cCeeccccCccccCCCc
Confidence                     689999999999999985 57899999999999999999998877777766   99999999999854  5


Q ss_pred             hhhcCCCCCCEEeCCCCccccCCccccCCCCC----CCEEEcCCCcCcccCCCC
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS----LKMLDISHNLLTTLEETS  226 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~----L~~L~l~~n~l~~lp~~~  226 (227)
                      ..+..+++|+.|++++|+++.+.+..+..+..    ...++++.|.++.+++..
T Consensus       167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~  220 (635)
T 4g8a_A          167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  220 (635)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence            67788999999999999999987776665433    346889999998887653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=5.4e-22  Score=155.74  Aligned_cols=195  Identities=21%  Similarity=0.376  Sum_probs=116.9

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc-
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS-   97 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~-   97 (227)
                      .+.|...     -...+|..++..+++|++++|.+..++...|..++ +|+.|++++|.+.. +...|... .+..+.- 
T Consensus        11 ~~~c~~~-----~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           11 TYQCMEL-----NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             EEECTTS-----CCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEEecCC-----CccccCCCCCCCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence            6888773     23335556666899999999999999988899998 99999999999988 66555321 1111110 


Q ss_pred             --hhhchh-hhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccC-CCCCCCCCCCCcccEEEcCCCCC
Q psy17253         98 --TLDNLK-NQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus        98 --~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                        .+..+. ..+.++++|+.|++++|.++.++. .+..+++|+.|++++|.++... +..+..+++   |+.|++++|.+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~---L~~L~Ls~N~l  161 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKI  161 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT---CCEEECCSSCC
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC---CCEEECCCCCC
Confidence              011111 123344566666666666655532 4555666666666666655532 333333333   66666666666


Q ss_pred             cCch-hhhcCCCCCC----EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        173 ENLD-GALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       173 ~~~~-~~~~~~~~L~----~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +.++ ..+..+.+++    .+++++|.+..+.+..+.. .+|+.|++++|.++++|+.
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTT
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHh
Confidence            5543 3333333333    5666666666654444443 3677888888888877764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=163.99  Aligned_cols=200  Identities=24%  Similarity=0.426  Sum_probs=121.6

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|....   ..+.|..     .-+..+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. +.
T Consensus        35 Cp~~C~C~~~~---~~v~c~~-----~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~  105 (440)
T 3zyj_A           35 CPSVCSCSNQF---SKVICVR-----KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEI  105 (440)
T ss_dssp             CCSSSEECTTS---CEEECCS-----CCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECG
T ss_pred             CCCCCEeCCCC---CEEEeCC-----CCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccCh
Confidence            33347776322   2688876     223334444445566666666666666656666665 66666666666655 43


Q ss_pred             CCC-----------CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-------------------------c-c
Q psy17253         85 AAL-----------RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-------------------------D-G  127 (227)
Q Consensus        85 ~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-------------------------~-~  127 (227)
                      ..|           +.|.+..++..      .+.++++|+.|++++|.++.+                         + .
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  179 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG  179 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTT------TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             hhccCCccCCEEECCCCcCCeeCHh------HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence            333           22333333221      112234444444444444433                         2 2


Q ss_pred             cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCC
Q psy17253        128 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL  206 (227)
Q Consensus       128 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~  206 (227)
                      .|..+++|+.|++++|.++.++  .+   ..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..|..+
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~--~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIP--NL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCC--CC---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             hhhcccccCeecCCCCcCcccc--cc---CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence            4555566666666666665443  12   2334478888888888766 3667788888888888888888888888888


Q ss_pred             CCCCEEEcCCCcCcccCCC
Q psy17253        207 DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       207 ~~L~~L~l~~n~l~~lp~~  225 (227)
                      ++|+.|++++|.++++|+.
T Consensus       255 ~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTT
T ss_pred             CCCCEEECCCCCCCccChh
Confidence            9999999999999888864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.7e-21  Score=150.04  Aligned_cols=159  Identities=22%  Similarity=0.307  Sum_probs=128.9

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA   94 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~   94 (227)
                      +.+++....+..|..  ++++|++++|.+..++...|..++ +|+.|++++|.+.. +...|           ..+.+..
T Consensus        45 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            444555656656665  899999999999999999899898 99999999999998 76665           3344444


Q ss_pred             CcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc
Q psy17253         95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE  173 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  173 (227)
                      ++.      ..+..+++|+.|++++|.++.++. .|..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++
T Consensus       124 ~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~  194 (270)
T 2o6q_A          124 LPP------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE---LKTLKLDNNQLK  194 (270)
T ss_dssp             CCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT---CCEEECCSSCCS
T ss_pred             eCH------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC---cCEEECCCCcCC
Confidence            332      223467899999999999999865 5788999999999999999988776666655   999999999999


Q ss_pred             Cchh-hhcCCCCCCEEeCCCCcccc
Q psy17253        174 NLDG-ALMGIHGLSRLDLSHNKLRT  197 (227)
Q Consensus       174 ~~~~-~~~~~~~L~~l~l~~n~l~~  197 (227)
                      .++. .+..+++|+.|++++|.+.-
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCHHHhccccCCCEEEecCCCeeC
Confidence            8874 57788999999999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=7e-22  Score=160.97  Aligned_cols=182  Identities=25%  Similarity=0.366  Sum_probs=150.3

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhh-cccccccEEEccCCCCCC-C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~   83 (227)
                      +|-.|.|...     .+.|..     .-+..+|..++..++.|++++|.|..++...|. .+. +|+.|++++|.+.. +
T Consensus        12 Cp~~C~C~~~-----~l~c~~-----~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~   80 (361)
T 2xot_A           12 CPANCLCASN-----ILSCSK-----QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFIS   80 (361)
T ss_dssp             CCTTCEEETT-----EEECCS-----SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEEC
T ss_pred             CCCCCEECCC-----EEEeCC-----CCcCccCccCCCCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccC
Confidence            4444777643     688876     233445666777899999999999999998887 887 99999999999988 6


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      +..|.                   ++++|+.|+|++|.++.++ ..|..+++|+.|++++|.+..+.+..+..+.+   |
T Consensus        81 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~---L  138 (361)
T 2xot_A           81 SEAFV-------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ---L  138 (361)
T ss_dssp             TTTTT-------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---C
T ss_pred             hhhcc-------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc---C
Confidence            66554                   3588999999999999985 46889999999999999999998888777766   9


Q ss_pred             cEEEcCCCCCcCchhhh----cCCCCCCEEeCCCCccccCCccccCCCCC--CCEEEcCCCcCc
Q psy17253        163 FELKLQHNEIENLDGAL----MGIHGLSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLT  220 (227)
Q Consensus       163 ~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~  220 (227)
                      +.|++++|.++.+|..+    ..+++|+.|++++|+++.+.+..+..++.  ++.|++.+|+++
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999999999998543    56899999999999999997777887776  478999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=2.2e-21  Score=167.80  Aligned_cols=191  Identities=18%  Similarity=0.244  Sum_probs=153.7

Q ss_pred             CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253          5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      ++++.|.|.....   .+.|..     .-...+|..++..++.|++++|.+..+++..|..++ +|+.|++++|.+.. .
T Consensus         3 ~~~~~C~~~~~~~---~~~c~~-----~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~   73 (606)
T 3t6q_A            3 SSDQKCIEKEVNK---TYNCEN-----LGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIYWIH   73 (606)
T ss_dssp             ---CCCEEEETTT---EEECTT-----SCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCCCEEC
T ss_pred             cccCceecccCCc---eEECCC-----CCcccCcCCCCCcCcEEEccCCccCcCChhHhccCc-cceEEECCCCccceeC
Confidence            4555566653322   788977     334456677777899999999999999988999998 99999999999987 6


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      +..|.                   ++++|+.|++++|.++.+ |..|..+++|++|++++|.++.+.+..+..+++   |
T Consensus        74 ~~~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~---L  131 (606)
T 3t6q_A           74 EDTFQ-------------------SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT---L  131 (606)
T ss_dssp             TTTTT-------------------TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT---C
T ss_pred             hhhcc-------------------CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc---c
Confidence            66654                   357899999999999886 778889999999999999998876666665555   9


Q ss_pred             cEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC--EEEcCCCcCcccCCCC
Q psy17253        163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK--MLDISHNLLTTLEETS  226 (227)
Q Consensus       163 ~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~--~L~l~~n~l~~lp~~~  226 (227)
                      +.|++++|.+..++ ..+..+++|+.|++++|.+..+.+..++.+++++  .|++++|.++++++.+
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~  198 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA  198 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence            99999999998764 4445588999999999999988888888898888  8999999998887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=3.5e-21  Score=162.16  Aligned_cols=200  Identities=26%  Similarity=0.408  Sum_probs=143.2

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|....   ..+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus         3 Cp~~C~C~~~~---~~v~c~~-----~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~   73 (477)
T 2id5_A            3 CPPRCECSAQD---RAVLCHR-----KRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEP   73 (477)
T ss_dssp             CSTTCEEETTT---TEEECCS-----CCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECT
T ss_pred             ccCCCeECCCC---CEEEeCC-----CCcCcCCCCCCCCCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeCh
Confidence            44457775321   2688876     333445666677899999999999999888899998 99999999999988 66


Q ss_pred             CCCC-----------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253         85 AALR-----------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD  152 (227)
Q Consensus        85 ~~~~-----------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~  152 (227)
                      ..|.           .+.+..+|..      .+.++++|+.|++++|.++.+ +..|..+++|+.|++++|.+..+.+..
T Consensus        74 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  147 (477)
T 2id5_A           74 GAFNNLFNLRTLGLRSNRLKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA  147 (477)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTT------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred             hhhhCCccCCEEECCCCcCCccCcc------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh
Confidence            6652           2333333321      233457788888888877775 556777777888888888777776666


Q ss_pred             CCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc-CcccC
Q psy17253        153 FIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLE  223 (227)
Q Consensus       153 ~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp  223 (227)
                      +..+++   |+.|++++|.++.++ ..+..+++|+.|++++|.+..+.+..|..+++|+.|++++|. +..+|
T Consensus       148 ~~~l~~---L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          148 FSGLNS---LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             STTCTT---CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             ccCCCC---CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence            655555   778888888877776 456777788888888888877767777788888888887765 34444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=3.8e-21  Score=166.31  Aligned_cols=178  Identities=22%  Similarity=0.353  Sum_probs=149.7

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..     .-...+|..++.++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..|.           
T Consensus        15 ~~~c~~-----~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~-----------   77 (606)
T 3vq2_A           15 TYQCMD-----QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWH-----------   77 (606)
T ss_dssp             EEECTT-----SCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT-----------
T ss_pred             ceEccC-----CCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccCHHHhh-----------
Confidence            788977     334445566667899999999999999998999998 99999999999987 666654           


Q ss_pred             hchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC--ch
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN--LD  176 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~  176 (227)
                              ++++|+.|++++|.++.+ |..|..+++|++|++++|.+...++..+..+.+   |+.|++++|.+..  +|
T Consensus        78 --------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A           78 --------GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT---LKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             --------TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred             --------chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC---CCEEeCCCCcccceech
Confidence                    357899999999999987 788999999999999999998887766666665   9999999999884  67


Q ss_pred             hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC----EEEcCCCcCcccCCCC
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK----MLDISHNLLTTLEETS  226 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~----~L~l~~n~l~~lp~~~  226 (227)
                      ..+..+++|+.|++++|+++.+.+..++.+..++    .+++++|.++++|+..
T Consensus       147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~  200 (606)
T 3vq2_A          147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA  200 (606)
T ss_dssp             GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred             HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence            8889999999999999999988777777665554    7999999999888753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=2.4e-21  Score=157.21  Aligned_cols=203  Identities=21%  Similarity=0.375  Sum_probs=151.3

Q ss_pred             ccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCC
Q psy17253         10 CKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAAL   87 (227)
Q Consensus        10 c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~   87 (227)
                      |.|...     .|.|..     .-+..+|..++.++++|++++|.|+.++.++|.+++ +|+.|++++|.+.+  +..+|
T Consensus         7 C~C~~~-----~v~C~~-----~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f   75 (350)
T 4ay9_X            7 CHCSNR-----VFLCQE-----SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVF   75 (350)
T ss_dssp             SEEETT-----EEEEES-----TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSB
T ss_pred             cEeeCC-----EEEecC-----CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHh
Confidence            666532     789976     223345666667899999999999999999999998 99999999999866  66676


Q ss_pred             CCCC-CCCCc----chhhch-hhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCC-CcCcccCCCCCCCCCCC
Q psy17253         88 RPID-VCAPP----STLDNL-KNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSV  159 (227)
Q Consensus        88 ~~~~-l~~~~----~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~  159 (227)
                      .... +..+-    ..+..+ +..+.++++|+.|++++|.++.++. .+.....+..+++.+ +.+..++...+..+.. 
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-  154 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-  154 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-
T ss_pred             hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-
Confidence            4321 11110    012222 2334567899999999999988754 445556777888755 5677777766655432 


Q ss_pred             CcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC-CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       160 ~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                       .++.|++++|+++.++.......+++.+++.+ |.++.+++++|..+++|+.|++++|+++++|+.
T Consensus       155 -~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          155 -ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             -SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             -hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence             37889999999998886666667888999875 778888888899999999999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=5.5e-21  Score=143.93  Aligned_cols=174  Identities=22%  Similarity=0.370  Sum_probs=136.8

Q ss_pred             CccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC
Q psy17253          7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA   85 (227)
Q Consensus         7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~   85 (227)
                      |..|.|.+.     .+.|..     .....+|..+..++++|++++|.+..++...|..++ +|+.|++++|.+.. +..
T Consensus         2 p~~C~C~~~-----~v~c~~-----~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            2 PSRCSCSGT-----TVECYS-----QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             CTTCEEETT-----EEECCS-----SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTT
T ss_pred             cCCCEECCC-----EEEecC-----CCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChh
Confidence            334555533     788876     223334555566899999999999999999899998 99999999999987 555


Q ss_pred             CCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccE
Q psy17253         86 ALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE  164 (227)
Q Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~  164 (227)
                      .|.                   ++++|++|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++   |+.
T Consensus        71 ~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~  128 (208)
T 2o6s_A           71 VFN-------------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ---LKD  128 (208)
T ss_dssp             TTT-------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCE
T ss_pred             hcC-------------------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc---CCE
Confidence            543                   35889999999999998855 4688999999999999999887766666655   999


Q ss_pred             EEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        165 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       165 l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      |++++|.++.++. .+..+++|+.|++++|.+..       .++.++.|++..|.++
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence            9999999998874 46788999999999997643       3455666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=1.2e-20  Score=151.88  Aligned_cols=204  Identities=25%  Similarity=0.491  Sum_probs=105.6

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|.-.     .+.|...    . ...+|..+..+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus        27 cp~~c~c~l~-----~l~~~~~----~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~   95 (332)
T 2ft3_A           27 CPFGCHCHLR-----VVQCSDL----G-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHE   95 (332)
T ss_dssp             CCSSCEEETT-----EEECCSS----C-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECG
T ss_pred             CCCCCcccCC-----EEECCCC----C-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCH
Confidence            4444555422     5677552    2 2233444445677777777777766666666666 67777777776665 44


Q ss_pred             CCC-----------CCCCCCCCcchhh--------------chh-hhhcCCCcccEEEccCCCccc--c-cccccCC---
Q psy17253         85 AAL-----------RPIDVCAPPSTLD--------------NLK-NQVQGVTNIFELKLQHNEIEN--L-DGALMGI---  132 (227)
Q Consensus        85 ~~~-----------~~~~l~~~~~~~~--------------~~~-~~~~~l~~L~~L~l~~n~l~~--l-~~~~~~l---  132 (227)
                      ..|           +.+.+..+|..+.              .++ ..+.++++|+.|++++|.++.  + +..+..+   
T Consensus        96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~  175 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN  175 (332)
T ss_dssp             GGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCS
T ss_pred             hHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccC
Confidence            333           3344444443221              011 112344555566665555542  1 2222222   


Q ss_pred             -----------------CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCc
Q psy17253        133 -----------------HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       133 -----------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~  194 (227)
                                       ++|+.|++++|.++...+..+..+   ++|+.|++++|.++.++ ..+..+++|+.|++++|+
T Consensus       176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY---SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTC---TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCC---CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence                             123333333333333333333322   23666666666666554 345566666666666666


Q ss_pred             cccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       195 l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++.+ |..+..+++|+.|++++|.++++|.
T Consensus       253 l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          253 LSRV-PAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             CCBC-CTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             Ceec-ChhhhcCccCCEEECCCCCCCccCh
Confidence            6655 4446666667777777776666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.4e-20  Score=143.10  Aligned_cols=159  Identities=19%  Similarity=0.428  Sum_probs=125.1

Q ss_pred             CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253          5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      .+|..|.|...     .+.|..     .-...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.. .
T Consensus         4 ~CP~~C~C~~~-----~v~c~~-----~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~   72 (220)
T 2v9t_B            4 HCPAACTCSNN-----IVDCRG-----KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELA   72 (220)
T ss_dssp             CSCTTSEEETT-----EEECTT-----SCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEEC
T ss_pred             CCCCCCEECCC-----EEEcCC-----CCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcC
Confidence            35555777643     688876     223344555666899999999999999988898888 99999999999887 5


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      +..|.                   ++++|+.|++++|.++.+|. .|..+++|+.|++++|.++.+.+..+..+++   |
T Consensus        73 ~~~~~-------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L  130 (220)
T 2v9t_B           73 PDAFQ-------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN---L  130 (220)
T ss_dssp             TTTTT-------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---C
T ss_pred             HHHhh-------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC---C
Confidence            55553                   35789999999999988865 4677889999999999998887777766665   8


Q ss_pred             cEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccc
Q psy17253        163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR  196 (227)
Q Consensus       163 ~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~  196 (227)
                      +.|++++|.++.++ ..+..+++|+.+++++|.+.
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88999999988876 45677888899999988874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=1.9e-20  Score=147.60  Aligned_cols=183  Identities=21%  Similarity=0.301  Sum_probs=149.3

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCC-CCCCC-----------CCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRP-DGAAL-----------RPIDVC   93 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~-----------~~~~l~   93 (227)
                      +.+.+....+..|..  ++++|++++|.+..+....|..++ +|+.|++++|. +.. ++..|           ..+.+.
T Consensus        40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A           40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence            344555555565655  899999999999998888899888 99999999997 776 55555           233333


Q ss_pred             CCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253         94 APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                      .++      +..+.++++|+.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++   |+.|++++|.+
T Consensus       119 ~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l  189 (285)
T 1ozn_A          119 ELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS---LDRLLLHQNRV  189 (285)
T ss_dssp             CCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---CCEEECCSSCC
T ss_pred             EEC------HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc---cCEEECCCCcc
Confidence            332      2234567899999999999999854 5888999999999999999988776766665   99999999999


Q ss_pred             cCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       173 ~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +.+ +..+..+++|+.|++++|+++.+.+..+..+++|+.|++++|++..
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            877 5778889999999999999999988889999999999999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=156.74  Aligned_cols=187  Identities=24%  Similarity=0.379  Sum_probs=143.7

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA   94 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~   94 (227)
                      +.+++....+..|..  +|+.|++++|.+..++..+|..++ +|+.|++++|.++. +...|           +.|.+..
T Consensus        72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            344555555555554  677777777777777777777776 77777777777776 55444           3333433


Q ss_pred             Ccc-hhh-----------------chh-hhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253         95 PPS-TLD-----------------NLK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG  155 (227)
Q Consensus        95 ~~~-~~~-----------------~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  155 (227)
                      ++. .+.                 .++ ..+.++++|+.|++++|.++.+|. +..+++|+.|++++|.++.+.+..+..
T Consensus       151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence            332 111                 111 134568999999999999999885 788999999999999999998888777


Q ss_pred             CCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       156 ~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +++   |+.|++++|+++.++ ..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.
T Consensus       230 l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          230 LMH---LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTT---CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             Ccc---CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            766   999999999999875 56788999999999999999998889999999999999999863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=8.4e-21  Score=148.94  Aligned_cols=186  Identities=22%  Similarity=0.281  Sum_probs=150.8

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCC-----------CCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----------PIDVCA   94 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----------~~~l~~   94 (227)
                      +.+.+....+..+..  ++++|++++|.+..++..+|..++ +|+.|++++|.+.. +...|.           .+.+..
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence            445566666656655  899999999999999988899998 99999999999988 665552           333333


Q ss_pred             CcchhhchhhhhcCCCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc-EEEcCCCC
Q psy17253         95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF-ELKLQHNE  171 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~-~l~l~~n~  171 (227)
                      ++..      .+..+++|+.|++++|.++.  +|..+..+++|+.|++++|.++.+++..+..+..++.+. .+++++|.
T Consensus       115 ~~~~------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          115 LENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             STTC------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             cCch------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            3221      24457899999999999987  588899999999999999999998777666666644444 89999999


Q ss_pred             CcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       172 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      ++.++.......+|+.|++++|+++.+.+..+..+++|+.|++++|+++.
T Consensus       189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            99887655555689999999999999988888999999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=5.2e-20  Score=154.09  Aligned_cols=187  Identities=25%  Similarity=0.386  Sum_probs=143.6

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA   94 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~   94 (227)
                      +.+.+....+..|..  +|+.|++++|.+..++...|..++ +|+.|++++|.+.. +...|           +.|.+..
T Consensus        83 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           83 MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            344555555555554  677777777777777767777776 77777777777776 55544           3344443


Q ss_pred             Ccc-hhhc-----------------hh-hhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253         95 PPS-TLDN-----------------LK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG  155 (227)
Q Consensus        95 ~~~-~~~~-----------------~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  155 (227)
                      ++. .+..                 ++ ..+.++++|+.|++++|.++.+|. +..+++|+.|++++|.++.+.+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred             eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC
Confidence            332 1111                 11 134568899999999999999865 788999999999999999998877777


Q ss_pred             CCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       156 ~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +++   |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.
T Consensus       241 l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          241 LSS---LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccC---CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            766   999999999999875 66788999999999999999998889999999999999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1e-19  Score=140.90  Aligned_cols=156  Identities=25%  Similarity=0.374  Sum_probs=135.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      ..+.++++++.+..+|....   . .++.|++++|.+.. ++..|.                   ++++|+.|++++|.+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~---~-~l~~L~L~~n~l~~~~~~~~~-------------------~l~~L~~L~L~~n~l   71 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP---A-DTEKLDLQSTGLATLSDATFR-------------------GLTKLTWLNLDYNQL   71 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC---T-TCCEEECTTSCCCCCCTTTTT-------------------TCTTCCEEECTTSCC
T ss_pred             CCeEEecCCCCccccCCCCC---C-CCCEEEccCCCcCccCHhHhc-------------------CcccCCEEECCCCcC
Confidence            36789999999999997532   3 89999999999987 555543                   358999999999999


Q ss_pred             ccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCc
Q psy17253        123 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISP  200 (227)
Q Consensus       123 ~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~  200 (227)
                      +.+ +..|..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+
T Consensus        72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCHhHhccCCcCCEEECCCCcccccChhHhcccCC---CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            997 556889999999999999999988777766665   9999999999998874 46889999999999999999988


Q ss_pred             cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        201 DDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      ..|..+++|+.|++++|.++++|+.
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHH
Confidence            8899999999999999999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=153.53  Aligned_cols=179  Identities=17%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             hcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCC-----------CCCCCCCcchhhch
Q psy17253         35 DALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----------PIDVCAPPSTLDNL  102 (227)
Q Consensus        35 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----------~~~l~~~~~~~~~~  102 (227)
                      ..+|..+..++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..|.           .|.+..++..    
T Consensus        44 ~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----  118 (353)
T 2z80_A           44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----  118 (353)
T ss_dssp             SSCCTTCCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH----
T ss_pred             ccccccccccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh----
Confidence            344556666899999999999999998899998 99999999999988 665553           2222222211    


Q ss_pred             hhhhcCCCcccEEEccCCCcccccc--cccCCCCCCEEEcCCC-cCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhh
Q psy17253        103 KNQVQGVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGA  178 (227)
Q Consensus       103 ~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~  178 (227)
                        .+.++++|+.|++++|.++.+|.  .+..+++|+.|++++| .+..+.+..+..+++   |+.|++++|.++.+ |..
T Consensus       119 --~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          119 --WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF---LEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             --HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE---EEEEEEEETTCCEECTTT
T ss_pred             --HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC---CCEEECCCCCcCccCHHH
Confidence              12344566666666666665543  4555666666666655 345444444443333   66666666665544 344


Q ss_pred             hcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       179 ~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +..+++|+.|++++|++..+....+..+++|+.|++++|.+++++
T Consensus       194 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence            555566666666666665553333444566666666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=3.8e-20  Score=158.74  Aligned_cols=177  Identities=24%  Similarity=0.360  Sum_probs=150.3

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|...     -...+|..++..++.|++++|.+..++..+|..++ +|+.|++++|.+.. ++..|.           
T Consensus        11 ~~~c~~~-----~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~-----------   73 (570)
T 2z63_A           11 TYQCMEL-----NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQ-----------   73 (570)
T ss_dssp             EEECCSS-----CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTT-----------
T ss_pred             EEEeCCC-----CccccCCCccccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCccccc-----------
Confidence            6889762     23345556667899999999999999998999998 99999999999987 666554           


Q ss_pred             hchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC--ch
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN--LD  176 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~  176 (227)
                              ++++|++|++++|.++.+ +..|..+++|++|++++|.++.++...+..+.+   |++|++++|.++.  +|
T Consensus        74 --------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~---L~~L~L~~n~l~~~~lp  142 (570)
T 2z63_A           74 --------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLP  142 (570)
T ss_dssp             --------TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred             --------CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc---ccEEecCCCccceecCh
Confidence                    358899999999999987 468899999999999999999887666666655   9999999999885  57


Q ss_pred             hhhcCCCCCCEEeCCCCccccCCccccCCCCCC----CEEEcCCCcCcccCCC
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL----KMLDISHNLLTTLEET  225 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L----~~L~l~~n~l~~lp~~  225 (227)
                      ..+..+++|+.|++++|+++.+.+..++.+..|    ..+++++|.++.+++.
T Consensus       143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence            888899999999999999998877788877777    8899999999988765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=2.5e-19  Score=136.92  Aligned_cols=147  Identities=20%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. +...|.           
T Consensus        23 ~v~c~~-----~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~-----------   85 (229)
T 3e6j_A           23 TVDCRS-----KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFD-----------   85 (229)
T ss_dssp             EEECTT-----SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-----------
T ss_pred             EeEccC-----CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcc-----------
Confidence            577765     223344444556788888888888877777777776 77777777777765 444432           


Q ss_pred             hchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G  177 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~  177 (227)
                              ++++|+.|++++|.++.++. .|..+++|+.|++++|.++.++. .+..++   +|+.|++++|+++.++ .
T Consensus        86 --------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~---~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           86 --------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLT---HLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             --------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCT---TCSEEECCSSCCCCCCTT
T ss_pred             --------cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCC---CCCEEECCCCcCCccCHH
Confidence                    24566777777776666643 34566666666666666665432 233333   3666666666666655 3


Q ss_pred             hhcCCCCCCEEeCCCCccc
Q psy17253        178 ALMGIHGLSRLDLSHNKLR  196 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~  196 (227)
                      .+..+++|+.|++++|.+.
T Consensus       154 ~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBC
T ss_pred             HHhCCCCCCEEEeeCCCcc
Confidence            4555666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=3.3e-19  Score=139.64  Aligned_cols=154  Identities=26%  Similarity=0.390  Sum_probs=122.2

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      ++++|++++|.+..++  .+..++ +|+.|++++|.+.. ++..|.                   ++++|+.|++++|.+
T Consensus        64 ~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~L~~n~l~~~~~~~~~-------------------~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           64 NVRYLALGGNKLHDIS--ALKELT-NLTYLILTGNQLQSLPNGVFD-------------------KLTNLKELVLVENQL  121 (272)
T ss_dssp             TCCEEECTTSCCCCCG--GGTTCT-TCCEEECTTSCCCCCCTTTTT-------------------TCTTCCEEECTTSCC
T ss_pred             CCcEEECCCCCCCCch--hhcCCC-CCCEEECCCCccCccChhHhc-------------------CCcCCCEEECCCCcC
Confidence            5777777777777664  466666 77777777777765 444332                   357899999999999


Q ss_pred             ccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCc
Q psy17253        123 ENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISP  200 (227)
Q Consensus       123 ~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~  200 (227)
                      +.++. .+..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+
T Consensus       122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            98754 5788899999999999998887766655555   9999999999988764 45788999999999999999888


Q ss_pred             cccCCCCCCCEEEcCCCcCccc
Q psy17253        201 DDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      ..+..+++|+.|++++|++..-
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCC
T ss_pred             HHHhCCcCCCEEEccCCCcccc
Confidence            8889999999999999987643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1.1e-19  Score=146.21  Aligned_cols=190  Identities=22%  Similarity=0.361  Sum_probs=138.7

Q ss_pred             cchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcch-
Q psy17253         31 GQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPST-   98 (227)
Q Consensus        31 ~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~-   98 (227)
                      +.+....+..+..  ++++|++++|.+..++...|..++ +|+.|++++|.+.. +...+        ..+.+..++.. 
T Consensus        64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~  142 (332)
T 2ft3_A           64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV  142 (332)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGG
T ss_pred             CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhH
Confidence            4444555555554  677788887777777667777776 77777777777776 54433        33444444331 


Q ss_pred             hhchhh-------------------hhcC--------------------CCcccEEEccCCCccccc-ccccCCCCCCEE
Q psy17253         99 LDNLKN-------------------QVQG--------------------VTNIFELKLQHNEIENLD-GALMGIHGLSRL  138 (227)
Q Consensus        99 ~~~~~~-------------------~~~~--------------------l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L  138 (227)
                      +..++.                   .+..                    .++|+.|++++|.++.++ ..+..+++|+.|
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            221111                   0111                    146778888888888774 678899999999


Q ss_pred             EcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCC------CCCCEE
Q psy17253        139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------DSLKML  212 (227)
Q Consensus       139 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~------~~L~~L  212 (227)
                      ++++|.++..++..+..+++   |+.|++++|.++.+|..+..+++|+.|++++|+++.+++..|...      ..++.+
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~---L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPT---LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTT---CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             ECCCCcCCcCChhHhhCCCC---CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence            99999999988777666655   999999999999999888999999999999999999987777653      668999


Q ss_pred             EcCCCcCc--ccCC
Q psy17253        213 DISHNLLT--TLEE  224 (227)
Q Consensus       213 ~l~~n~l~--~lp~  224 (227)
                      ++.+|++.  .+++
T Consensus       300 ~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          300 SLFNNPVPYWEVQP  313 (332)
T ss_dssp             ECCSSSSCGGGSCG
T ss_pred             EeecCcccccccCc
Confidence            99999987  4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=2.4e-19  Score=136.24  Aligned_cols=158  Identities=26%  Similarity=0.525  Sum_probs=125.5

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCC-ChhhhhcccccccEEEccCCCCCC-C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDL-PSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      +|-.|.|...     .+.|...    . ...+|..++..++.|++++|.+..+ +...|..++ +|+.|++++|.+.. +
T Consensus         5 CP~~C~C~~~-----~l~~s~n----~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~   73 (220)
T 2v70_A            5 CPEKCRCEGT-----TVDCSNQ----K-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIE   73 (220)
T ss_dssp             CCTTCEEETT-----EEECCSS----C-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEEC
T ss_pred             CCCCCEECCC-----EeEeCCC----C-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEEC
Confidence            4445777643     6888662    2 2335666666789999999999988 456688887 99999999999887 6


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      +..|.                   ++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+.+..+..+.+   |
T Consensus        74 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L  131 (220)
T 2v70_A           74 EGAFE-------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS---V  131 (220)
T ss_dssp             TTTTT-------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT---C
T ss_pred             HHHhC-------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc---C
Confidence            55554                   3578999999999999874 46888999999999999999888777776666   9


Q ss_pred             cEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccc
Q psy17253        163 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR  196 (227)
Q Consensus       163 ~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~  196 (227)
                      +.|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus       132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999999999887 567788899999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.5e-19  Score=158.36  Aligned_cols=176  Identities=24%  Similarity=0.417  Sum_probs=110.8

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..     .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. ++..|            
T Consensus         8 ~~~cs~-----~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~------------   69 (680)
T 1ziw_A            8 VADCSH-----LKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELC------------   69 (680)
T ss_dssp             EEECCS-----SCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCCCCCTTHH------------
T ss_pred             eeECCC-----CCccccccccCCCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccCccCHHHH------------
Confidence            688876     223345566667899999999999999999999998 99999999999887 44433            


Q ss_pred             hchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G  177 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~  177 (227)
                             .++++|+.|++++|.++.+|. .|..+++|++|++++|.+..+++..+..+++   |+.|++++|.++..+ .
T Consensus        70 -------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           70 -------QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN---LITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             -------HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT---CCEEECCSSCCSCCCCC
T ss_pred             -------hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC---CCEEECCCCcccccCch
Confidence                   123556666666666555543 4555566666666666555555444444443   556666666555443 3


Q ss_pred             hhcCCCCCCEEeCCCCccccCCccccC--CCCCCCEEEcCCCcCcccCC
Q psy17253        178 ALMGIHGLSRLDLSHNKLRTISPDDFI--GLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+..+++|+.|++++|.++.+.+..+.  .+++|+.|++++|.++++++
T Consensus       140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            345555566666666655555443332  33555666666665555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=5.3e-20  Score=147.07  Aligned_cols=181  Identities=21%  Similarity=0.253  Sum_probs=110.4

Q ss_pred             cccCCCCC--CccEEEeCC-CCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC-CCcchh
Q psy17253         36 ALQDRFGN--DSISLKIAV-SNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC-APPSTL   99 (227)
Q Consensus        36 ~~~~~~~~--~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~-~~~~~~   99 (227)
                      .+|..+..  ++++|++++ |.+....+..|..++ +|+.|++++|.+.+ .+..|           +.|.+. .+|.. 
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-  144 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-  144 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-
Confidence            44444444  788888884 777654445577776 78888888888774 33333           223332 23332 


Q ss_pred             hchhhhhcCCCcccEEEccCCCcc-cccccccCCC-CCCEEEcCCCcCcccCCCCCCCC--------------------C
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIE-NLDGALMGIH-GLSRLDLSHNKLRTISPDDFIGL--------------------D  157 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~--------------------~  157 (227)
                            +..+++|+.|++++|.++ .+|..+..+. +|+.|++++|.+++..+..+..+                    .
T Consensus       145 ------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          145 ------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             ------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCC
T ss_pred             ------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHh
Confidence                  233455666666666665 3455555554 55555555555543333222211                    1


Q ss_pred             CCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc-ccCC
Q psy17253        158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEE  224 (227)
Q Consensus       158 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~lp~  224 (227)
                      .+++|+.|++++|.++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.++ .+|.
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            233477777777777655444666778888888888887666778888888888888888887 4444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=2.5e-19  Score=149.81  Aligned_cols=184  Identities=21%  Similarity=0.386  Sum_probs=130.0

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~   83 (227)
                      ++..|.|...     .+.|..     .-...+|. ++.++++|++++|.+..++...|..++ +|+.|++++|.+..  +
T Consensus         4 ~~~~c~~~~~-----~~~c~~-----~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~   71 (455)
T 3v47_A            4 GTSECSVIGY-----NAICIN-----RGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIR   71 (455)
T ss_dssp             ---CCEEETT-----EEECCS-----SCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEEC
T ss_pred             ccceeEEEcc-----ccCcCC-----CCcccCCC-CCCccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceEC
Confidence            3344666533     688876     22333444 566899999999999999888899998 99999999999874  4


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCccc--CCCCCCCCCCCC
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI--SPDDFIGLDSVT  160 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~~  160 (227)
                      +..|.                   ++++|++|++++|.++.+ |..|..+++|++|++++|.+++.  ....+..+++  
T Consensus        72 ~~~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--  130 (455)
T 3v47_A           72 NNTFR-------------------GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS--  130 (455)
T ss_dssp             TTTTT-------------------TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT--
T ss_pred             ccccc-------------------ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc--
Confidence            54443                   357888888888888876 67788888888888888888763  2223444444  


Q ss_pred             cccEEEcCCCCCcCc-hhh-hcCCCCCCEEeCCCCccccCCccccCCC--CCCCEEEcCCCcCcccC
Q psy17253        161 NIFELKLQHNEIENL-DGA-LMGIHGLSRLDLSHNKLRTISPDDFIGL--DSLKMLDISHNLLTTLE  223 (227)
Q Consensus       161 ~L~~l~l~~n~~~~~-~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~lp  223 (227)
                       |+.|++++|.++.+ |.. +..+++|+.|++++|++..+.+..+..+  ..++.+++++|.+.+++
T Consensus       131 -L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~  196 (455)
T 3v47_A          131 -LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN  196 (455)
T ss_dssp             -CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred             -CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence             88888888888766 433 6778888888888888887766655544  34445555555544444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=4.4e-19  Score=140.24  Aligned_cols=165  Identities=25%  Similarity=0.304  Sum_probs=137.2

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhh
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQ  105 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~  105 (227)
                      +.+.+....+..+..  +++.|++++|.+..++..  ..++ +|+.|++++|.+.. +. .+                  
T Consensus        39 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~-~L~~L~Ls~N~l~~l~~-~~------------------   96 (290)
T 1p9a_G           39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP-VLGTLDLSHNQLQSLPL-LG------------------   96 (290)
T ss_dssp             TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT-TCCEEECCSSCCSSCCC-CT------------------
T ss_pred             CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC-cCCEEECCCCcCCcCch-hh------------------
Confidence            445666666666665  899999999999988764  5676 99999999999876 32 11                  


Q ss_pred             hcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCC
Q psy17253        106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIH  183 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~  183 (227)
                       .++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..+..+++   |+.|++++|+++.+|. .+..++
T Consensus        97 -~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G           97 -QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---LEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             -TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECTTSCCSCCCTTTTTTCT
T ss_pred             -ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC---CCEEECCCCcCCccCHHHhcCcC
Confidence             23588999999999999985 67899999999999999999988877666666   9999999999999984 457899


Q ss_pred             CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +|+.|++++|+++.+ |..+.....|+.+++++|++.
T Consensus       173 ~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence            999999999999988 555566779999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.1e-18  Score=140.14  Aligned_cols=189  Identities=20%  Similarity=0.329  Sum_probs=141.8

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcc
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPS   97 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~   97 (227)
                      +.+.+.+..+..+..  ++++|++++|.+..+.+..|..++ +|+.|++++|.++. +...+        ..+.+..++.
T Consensus        60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~  138 (330)
T 1xku_A           60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK  138 (330)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH
T ss_pred             CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCCcCCccChhhcccccEEECCCCcccccCH
Confidence            344555555555654  799999999999988777888887 89999999998887 55443        3344443332


Q ss_pred             h-hhc-------------------hhhhhcCC---------------------CcccEEEccCCCcccc-cccccCCCCC
Q psy17253         98 T-LDN-------------------LKNQVQGV---------------------TNIFELKLQHNEIENL-DGALMGIHGL  135 (227)
Q Consensus        98 ~-~~~-------------------~~~~~~~l---------------------~~L~~L~l~~n~l~~l-~~~~~~l~~L  135 (227)
                      . +..                   ....+.++                     ++|+.|++++|.++.+ +..+..+++|
T Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            1 111                   11112223                     4566666666666665 5678889999


Q ss_pred             CEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCC------CCC
Q psy17253        136 SRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------DSL  209 (227)
Q Consensus       136 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~------~~L  209 (227)
                      +.|++++|.++..++..+..+++   |+.|++++|.++.+|..+..+++|+.|++++|+++.+.+..|...      ..+
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPH---LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTT---CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CEEECCCCcCceeChhhccCCCC---CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence            99999999999988766666555   999999999999999888899999999999999999987777543      678


Q ss_pred             CEEEcCCCcCcc
Q psy17253        210 KMLDISHNLLTT  221 (227)
Q Consensus       210 ~~L~l~~n~l~~  221 (227)
                      +.+++.+|++..
T Consensus       296 ~~l~l~~N~~~~  307 (330)
T 1xku_A          296 SGVSLFSNPVQY  307 (330)
T ss_dssp             SEEECCSSSSCG
T ss_pred             cceEeecCcccc
Confidence            999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=6.2e-20  Score=146.64  Aligned_cols=175  Identities=15%  Similarity=0.193  Sum_probs=116.5

Q ss_pred             CCccEEEeCCCCCCC--CChhhhhcccccccEEEccC-CCCCC-CCCCCC-CCCCCCCcc---hhh-chhhhhcCCCccc
Q psy17253         43 NDSISLKIAVSNLND--LPSKTFQELGLQIVNLKLTK-NNLRP-DGAALR-PIDVCAPPS---TLD-NLKNQVQGVTNIF  113 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~-~~~l~~~~~---~~~-~~~~~~~~l~~L~  113 (227)
                      .+++.|++++|.+..  .-+..|..++ .|+.|++++ |.+.+ .+..|. ...+..+.-   .+. .++..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            379999999999986  3335688898 999999995 88876 443331 111221111   111 2333455678899


Q ss_pred             EEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCC
Q psy17253        114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLS  191 (227)
Q Consensus       114 ~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~  191 (227)
                      .|++++|.++. +|..+..+++|++|++++|.+++..+..+..+.  +.|+.|++++|.++ .+|..+..+. |+.|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC--TTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh--hcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999884 688888899999999999998866666665554  13777788777776 4445454444 6666666


Q ss_pred             CCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        192 HNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       192 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +|++....+..+..+++|+.|++++|.++.
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            666665555555555555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=1.2e-18  Score=136.53  Aligned_cols=156  Identities=25%  Similarity=0.339  Sum_probs=135.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      +++.|+++++.+..++.  +..++ +|+.|++++|.+...+                    .+..+++|++|++++|.++
T Consensus        42 ~L~~L~l~~~~i~~~~~--l~~l~-~L~~L~l~~n~l~~~~--------------------~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQG--IQYLP-NVRYLALGGNKLHDIS--------------------ALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECTTSCCCCCG--------------------GGTTCTTCCEEECTTSCCC
T ss_pred             ceeeeeeCCCCcccccc--cccCC-CCcEEECCCCCCCCch--------------------hhcCCCCCCEEECCCCccC
Confidence            79999999999998875  77787 9999999999987411                    1224689999999999999


Q ss_pred             cccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCcc
Q psy17253        124 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       124 ~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      .++. .+..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+.
T Consensus        99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC---CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            9854 5788999999999999999888776666666   9999999999998874 468899999999999999999888


Q ss_pred             ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .++.+++|+.|++++|.++++|+.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             HhcCCccCCEEECCCCcCCccCHH
Confidence            899999999999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.1e-19  Score=135.60  Aligned_cols=150  Identities=23%  Similarity=0.457  Sum_probs=129.9

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      -+.++++++.++.+|....    ..++.|++++|.+.. ++ ..|                   .++++|+.|++++|.+
T Consensus        13 ~~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~-------------------~~l~~L~~L~L~~N~i   69 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIF-------------------KKLPQLRKINFSNNKI   69 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCG-------------------GGCTTCCEEECCSSCC
T ss_pred             CCEeEeCCCCcccCccCCC----CCCCEEEcCCCcCCccCchhhh-------------------ccCCCCCEEECCCCcC
Confidence            4589999999999987432    268899999999987 33 233                   2368999999999999


Q ss_pred             cccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCc
Q psy17253        123 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISP  200 (227)
Q Consensus       123 ~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~  200 (227)
                      +.++ ..|..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+
T Consensus        70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS---CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC---CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            9985 48999999999999999999988777776666   999999999999884 678889999999999999999989


Q ss_pred             cccCCCCCCCEEEcCCCcCc
Q psy17253        201 DDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~  220 (227)
                      ..|..+++|+.|++++|+++
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEE
T ss_pred             HHhcCCCCCCEEEecCcCCc
Confidence            99999999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=2.4e-19  Score=142.55  Aligned_cols=115  Identities=27%  Similarity=0.394  Sum_probs=101.1

Q ss_pred             hhcCCCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcC
Q psy17253        105 QVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMG  181 (227)
Q Consensus       105 ~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~  181 (227)
                      .+.++++|+.|++++|.++.  +|..+..+++|+.|++++|.++...+..+..+++   |+.|++++|.++.++ ..+..
T Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS---LQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT---CCEEECTTSCCSBCCSGGGTT
T ss_pred             hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC---CCEEECCCCccCccChhhccC
Confidence            34568999999999999986  6888999999999999999999988777766665   999999999999886 46788


Q ss_pred             CCCCCEEeCCCCccccCCccccCCCC-CCCEEEcCCCcCccc
Q psy17253        182 IHGLSRLDLSHNKLRTISPDDFIGLD-SLKMLDISHNLLTTL  222 (227)
Q Consensus       182 ~~~L~~l~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~l  222 (227)
                      +++|+.|++++|++....+..+..++ +|+.|++++|+++.-
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            89999999999999998888888884 899999999998653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=7.8e-19  Score=141.18  Aligned_cols=174  Identities=24%  Similarity=0.339  Sum_probs=107.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhc--hhhhhcCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDN--LKNQVQGV  109 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~--~~~~~~~l  109 (227)
                      ++++|++++|.+..+|. .+..++ +|+.|++++|.+.. +....           .++.+..+|..+..  +...+.++
T Consensus       105 ~L~~L~L~~n~l~~lp~-~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLMELPD-TMQQFA-GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCCCCCS-CGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCccchhH-HHhccC-CCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            68888888888887764 466676 78888888888776 43322           11233344443321  01112235


Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEE
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRL  188 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l  188 (227)
                      ++|+.|++++|.++.+|..+..+++|+.|++++|.++++++ .+..++   +|+.|++++|.+. .+|..+..+++|+.|
T Consensus       183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~---~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLP---KLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCT---TCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCC---CCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            67777777777777666667777777777777777765543 233333   3777777776544 445556666777777


Q ss_pred             eCCCCccccCCccccCCCCCCCEEEcCCCc-CcccC
Q psy17253        189 DLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLE  223 (227)
Q Consensus       189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp  223 (227)
                      ++++|.+....|..+..+++|+.|++++|. +..+|
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            777766655556666677777777777755 34444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=6.9e-19  Score=144.51  Aligned_cols=64  Identities=31%  Similarity=0.438  Sum_probs=38.0

Q ss_pred             CcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        160 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       160 ~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.++++|+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCc
Confidence            4466666666666654 34555666666666666666655 3344555666666666666655553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=1.8e-18  Score=142.08  Aligned_cols=174  Identities=24%  Similarity=0.319  Sum_probs=94.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVTN  111 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~  111 (227)
                      ++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..|           ..+.+..+|..      .+.++++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~------~~~~l~~  142 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG------IFHNTPK  142 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTT
T ss_pred             cCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH------HhcCCCC
Confidence            355555555555555444455554 55555555555544 33332           22222222221      1223455


Q ss_pred             ccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCC--------------------------------
Q psy17253        112 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS--------------------------------  158 (227)
Q Consensus       112 L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--------------------------------  158 (227)
                      |+.|++++|.++.+ +..+..+++|+.|++++|.++..+...+..+..                                
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            55556655555554 334555555666666655555432222111100                                


Q ss_pred             --CCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        159 --VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       159 --~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                        .++|+.|++++|.++.. ..+..+++|+.|++++|.+..+.+..+..+++|+.|++++|.++++|..
T Consensus       223 ~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY  290 (390)
T ss_dssp             CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS
T ss_pred             cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc
Confidence              01233344444444333 2345667888888888888887778888899999999999998887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=2.5e-18  Score=148.67  Aligned_cols=99  Identities=18%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVTN  111 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~  111 (227)
                      +|+.|++++|.+..++...|..++ +|+.|++++|.+.. ++..|           +.|.+..+|..+      +..+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------~~~l~~  148 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------FHNTPK  148 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTT
T ss_pred             CCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH------hccCCC
Confidence            577777777777777666676666 77777777777766 55444           333333333321      234567


Q ss_pred             ccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccC
Q psy17253        112 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS  149 (227)
Q Consensus       112 L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~  149 (227)
                      |+.|++++|.++.+ |..|..+++|+.|++++|.++..+
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            77777777777765 445677777777777777766543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=9.7e-19  Score=147.22  Aligned_cols=193  Identities=19%  Similarity=0.245  Sum_probs=149.0

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-CCCCCCcch---hh
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-IDVCAPPST---LD  100 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~~~---~~  100 (227)
                      .+.+++....+..|..  +|++|++++|.+..+.+.+|..++ +|+.|++++|.+.. +...|.. ..+..+.-+   +.
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            3455666666777766  899999999999999888899998 99999999999998 7766632 112221111   11


Q ss_pred             c-hhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253        101 N-LKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G  177 (227)
Q Consensus       101 ~-~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~  177 (227)
                      . .+..+.++++|+.|++++|.++.+ +..|..+++|+.|++++|.++.++...+..+++   |+.|++++|.+..++ .
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~i~~~~~~  194 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG---LIVLRLRHLNINAIRDY  194 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT---CCEEEEESCCCCEECTT
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC---CcEEeCCCCcCcEeChh
Confidence            1 123345678999999999999987 668899999999999999998877655655655   999999999999876 5


Q ss_pred             hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+..+.+|+.|++++|......+.......+|+.|++++|.++++|.
T Consensus       195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred             hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence            67889999999999987544334344445589999999999999884

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=2.8e-18  Score=143.42  Aligned_cols=113  Identities=27%  Similarity=0.472  Sum_probs=80.4

Q ss_pred             CcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCE
Q psy17253        110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSR  187 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~  187 (227)
                      ++|+.|++++|.++.+ |..+..+++|+.|++++|.+....+..+..+++   |+.|++++|.++.++ ..+..+++|+.
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH---LLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT---CCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc---CCEEECCCCccCCcChhHhcCcccCCE
Confidence            3566666666666654 556677777888888888777776666655555   777777777777663 55667777777


Q ss_pred             EeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      |++++|+++.+.+..+..+++|+.|++++|.++++|+.
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence            77777777777677777777777777777777777763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.2e-18  Score=150.56  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             ccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253         30 FGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL   87 (227)
Q Consensus        30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~   87 (227)
                      .+.+....+..|..  +|+.|++++|.+..+++..|..++ +|+.|++++|.+.. +...|
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~  143 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIF  143 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHh
Confidence            34444444545555  788888888888888888888887 88888888888888 66654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=1.8e-18  Score=140.83  Aligned_cols=155  Identities=29%  Similarity=0.331  Sum_probs=132.9

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      -+.++++++.+..+|....    ..++.|++++|.+.. +...|..                  ++++|+.|++++|.|+
T Consensus        20 ~~~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N~l~~l~~~~~~~------------------~l~~L~~L~L~~N~i~   77 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPT------------------RLTNLHSLLLSHNHLN   77 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC----TTCSEEECCSSCCCEECTTSSSS------------------CCTTCCEEECCSSCCC
T ss_pred             CCEEEeCCCCcCccCccCC----CCCCEEECCCCCCCccChhhhhh------------------cccccCEEECCCCcCC
Confidence            3689999999999997532    268899999999988 6665531                  2588999999999999


Q ss_pred             ccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        124 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       124 ~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      .++ ..|..+++|+.|+|++|.++.+++..+..+.+   |+.|++++|.++.++ ..+..+.+|+.|++++|+++.++..
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA---LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC---CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            985 57899999999999999999998877777766   999999999999885 6788999999999999999999777


Q ss_pred             cc---CCCCCCCEEEcCCCcCcccCC
Q psy17253        202 DF---IGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       202 ~~---~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .|   ..+++|+.|++++|.++.+|.
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCCCCCH
T ss_pred             HhcCcccCCcCCEEECCCCCCCccCH
Confidence            77   568999999999999999884

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=2.3e-18  Score=150.79  Aligned_cols=192  Identities=23%  Similarity=0.343  Sum_probs=131.5

Q ss_pred             chhhcccCCCCC--CccEEEeCCCCCC-CCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc------hhh
Q psy17253         32 QVVDALQDRFGN--DSISLKIAVSNLN-DLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS------TLD  100 (227)
Q Consensus        32 ~~~~~~~~~~~~--~l~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~------~~~  100 (227)
                      ++....+..+..  +++.|++++|.+. .++...|..++ +|+.|++++|.+.. +...|... .+..+.-      .+.
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            344444444443  5666666666665 35555566665 66666666666655 44333210 0000000      112


Q ss_pred             chhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCC-----CCCCCCcccEEEcCCCCCcC
Q psy17253        101 NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI-----GLDSVTNIFELKLQHNEIEN  174 (227)
Q Consensus       101 ~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~  174 (227)
                      ..+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+....+.     .+..+++|+.|++++|.++.
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE  550 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence            23334456788999999999999874 4678889999999999998876433211     13344559999999999998


Q ss_pred             chh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        175 LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       175 ~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +|. .+..+++|+.|++++|+++.+++..|..+++|+.|++++|.++++++
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            884 57888999999999999999988888999999999999999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.79  E-value=1.4e-18  Score=154.35  Aligned_cols=86  Identities=33%  Similarity=0.454  Sum_probs=47.5

Q ss_pred             CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCE
Q psy17253        133 HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM  211 (227)
Q Consensus       133 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~  211 (227)
                      .+|+.|++++|.+++..+..++.++.   |+.|++++|.++ .+|..++.+++|+.|++++|++++..|..++.++.|+.
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~---L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPY---LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTT---CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ccccEEECcCCcccccCCHHHhcccc---CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            34445555555554444444433333   555666666655 45555555666666666666666555556666666666


Q ss_pred             EEcCCCcCcc
Q psy17253        212 LDISHNLLTT  221 (227)
Q Consensus       212 L~l~~n~l~~  221 (227)
                      |++++|++++
T Consensus       709 L~ls~N~l~g  718 (768)
T 3rgz_A          709 IDLSNNNLSG  718 (768)
T ss_dssp             EECCSSEEEE
T ss_pred             EECcCCcccc
Confidence            6666666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.79  E-value=2.8e-18  Score=152.32  Aligned_cols=172  Identities=22%  Similarity=0.252  Sum_probs=116.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC-CCcchhhchhhhhcCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC-APPSTLDNLKNQVQGVT  110 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~-~~~~~~~~~~~~~~~l~  110 (227)
                      +++.|++++|.+....+..+..++ +|+.|++++|.+.+ .+..+           +.|.+. .+|.       .+..++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------~~~~l~  514 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-------WIGRLE  514 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCT
T ss_pred             CCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-------HHhcCC
Confidence            455555555555543333444554 55555555555554 22222           222222 2222       233457


Q ss_pred             cccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCC----------------------------------
Q psy17253        111 NIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIG----------------------------------  155 (227)
Q Consensus       111 ~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  155 (227)
                      +|+.|++++|.+++ +|..+..+++|+.|++++|.+.+..|..+..                                  
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            88888888888875 5778888888888888888776433322211                                  


Q ss_pred             ---------------------------------CCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        156 ---------------------------------LDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       156 ---------------------------------~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                                                       +..+++|+.|++++|+++ .+|..++.++.|+.|++++|++++..|.
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence                                             122356889999999988 6788889999999999999999987799


Q ss_pred             ccCCCCCCCEEEcCCCcCcccC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      .++.++.|+.||+++|.+++..
T Consensus       675 ~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          675 EVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEECC
T ss_pred             HHhCCCCCCEEECCCCcccCcC
Confidence            9999999999999999998443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=8.7e-18  Score=126.36  Aligned_cols=153  Identities=22%  Similarity=0.326  Sum_probs=129.7

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      -+.++.+++.+..+|...   .. +++.|++++|.+.. +...|.                   ++++|+.|++++|.++
T Consensus         9 ~~~v~c~~~~l~~~p~~~---~~-~l~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~L~l~~n~l~   65 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI---PA-QTTYLDLETNSLKSLPNGVFD-------------------ELTSLTQLYLGGNKLQ   65 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC---CT-TCSEEECCSSCCCCCCTTTTT-------------------TCTTCSEEECCSSCCC
T ss_pred             CCEEEecCCCccCCCCCC---CC-CCcEEEcCCCccCcCChhhhc-------------------ccccCcEEECCCCccC
Confidence            367899999999998653   23 89999999999987 555543                   3588999999999999


Q ss_pred             cccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCcc
Q psy17253        124 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       124 ~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      .++. .|..+++|++|++++|.++.+++..+..+++   |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+.
T Consensus        66 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ---LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC---CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            9855 5688999999999999999887766666655   9999999999998874 468899999999999999999888


Q ss_pred             ccCCCCCCCEEEcCCCcCcccC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      .+..+++|+.|++++|++..-.
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCT
T ss_pred             HhccCCCccEEEecCCCeecCC
Confidence            8999999999999999876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=5.9e-19  Score=143.11  Aligned_cols=139  Identities=15%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA   94 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~   94 (227)
                      +.+.+....+..+..  +++.|++++|.+..++..+|..++ +|+.|++++|.++. +...|           +.|.+..
T Consensus        60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred             CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence            334455544445554  788888888888877777777776 78888888888776 54322           3344444


Q ss_pred             CcchhhchhhhhcCCCcccEEEccCC-Ccccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253         95 PPSTLDNLKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI  172 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  172 (227)
                      +|..     ..+..+++|+.|++++| .++.+ +..+..+++|+.|++++|.+....+..+..+++   |+.|++++|.+
T Consensus       139 l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l  210 (353)
T 2z80_A          139 LGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN---VSHLILHMKQH  210 (353)
T ss_dssp             SCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE---EEEEEEECSCS
T ss_pred             cCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc---CCeecCCCCcc
Confidence            3330     12334567777777777 46665 456677777777777777777766655554443   55555555555


Q ss_pred             cCch
Q psy17253        173 ENLD  176 (227)
Q Consensus       173 ~~~~  176 (227)
                      ..++
T Consensus       211 ~~~~  214 (353)
T 2z80_A          211 ILLL  214 (353)
T ss_dssp             TTHH
T ss_pred             ccch
Confidence            4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=4.1e-18  Score=147.30  Aligned_cols=59  Identities=24%  Similarity=0.228  Sum_probs=43.7

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL   87 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~   87 (227)
                      .+.+.+....+..|..  ++++|++++|.+..+.+.+|..++ +|+.|++++|.+.. .+..|
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTT
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhh
Confidence            3455666666666665  788888888888888777788887 88888888888877 55444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=2.9e-18  Score=137.81  Aligned_cols=169  Identities=21%  Similarity=0.278  Sum_probs=128.4

Q ss_pred             CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253         43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTN  111 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~  111 (227)
                      .+++.|++++|.+..+|.. +..++ +|+.|++++|.+.. +....          +.|.+..+|..+       ..+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-------~~l~~  151 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-AFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-------ASLNR  151 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-GGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-------GGCTT
T ss_pred             cceeEEEccCCCchhcChh-hhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-------hcCcC
Confidence            4799999999999999976 45587 99999999999987 54322          444455555443       34578


Q ss_pred             ccEEEccCCCcc-ccccccc---------CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcC
Q psy17253        112 IFELKLQHNEIE-NLDGALM---------GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMG  181 (227)
Q Consensus       112 L~~L~l~~n~l~-~l~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  181 (227)
                      |+.|++++|.+. .+|..+.         .+++|+.|++++|.++.++ ..+..++   +|+.|++++|.++.+|..+..
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~---~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQ---NLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCT---TCCEEEEESSCCCCCCGGGGG
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCC---CCCEEEccCCCCCcCchhhcc
Confidence            888888886544 4565544         3888888888888887553 3444444   489999999999888877888


Q ss_pred             CCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc-CcccCC
Q psy17253        182 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEE  224 (227)
Q Consensus       182 ~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp~  224 (227)
                      +++|+.|++++|.+....+..++.+++|+.|++++|. +..+|.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            8999999999988877778888999999999999976 444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=5.6e-18  Score=135.20  Aligned_cols=170  Identities=20%  Similarity=0.160  Sum_probs=128.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCC-CCCCCCC-CCCCCCcchhhc------hhhhh--cC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRP-DGAALRP-IDVCAPPSTLDN------LKNQV--QG  108 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~~~~~~------~~~~~--~~  108 (227)
                      ++++|++++|.+..+| ..+..+     + +|+.|++++|++.. ++..|.. ..+..+.-+-..      ....+  ..
T Consensus       122 ~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          122 DLNILNLRNVSWATRD-AWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCSEEEEESCBCSSSS-SHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CccEEEccCCCCcchh-HHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            7999999999999885 556666     6 89999999999988 6555532 122222211111      11222  57


Q ss_pred             CCcccEEEccCCCccccc----ccccCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCcccEEEcCCCCCcCchhhhcCCC
Q psy17253        109 VTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIENLDGALMGIH  183 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  183 (227)
                      +++|+.|++++|.++.++    ..+..+++|+.|++++|.+++..+ ..+..+   ++|+.|++++|.++.+|..+.  +
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP---SQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---TTCCEEECTTSCCSSCCSSCC--S
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---CCCCEEECCCCccChhhhhcc--C
Confidence            899999999999998543    334577899999999999988653 233334   459999999999998887665  7


Q ss_pred             CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      +|+.|++++|+++++ |. +..+++|+.|++++|++++.
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            899999999999998 54 88999999999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=2e-17  Score=142.03  Aligned_cols=111  Identities=17%  Similarity=0.262  Sum_probs=81.0

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------C
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------R   88 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~   88 (227)
                      .+.|..    +++.. +|..++.+++.|++++|.+..++...|..++ +|+.|++++|.++. ++..|           +
T Consensus        35 ~l~ls~----~~L~~-ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           35 MVDYSN----RNLTH-VPKDLPPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             EEECTT----SCCCS-CCTTSCTTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             EEEcCC----CCCcc-CCCCCCCCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            577755    24433 5555667899999999999999998999998 99999999999998 77666           4


Q ss_pred             CCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc--cccccCCCCCCEEEcCCCcCc
Q psy17253         89 PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLR  146 (227)
Q Consensus        89 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~l~  146 (227)
                      .|.+..+|..         .+++|+.|++++|.++.+  |..|..+++|+.|++++|.+.
T Consensus       109 ~N~l~~lp~~---------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          109 HNRLQNISCC---------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TSCCCEECSC---------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCcCCccCcc---------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            4445444432         356777777777777765  356777777777777766554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.2e-17  Score=133.05  Aligned_cols=161  Identities=22%  Similarity=0.408  Sum_probs=102.5

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCC----------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+...+...          +.+.+..++.        +..+++|+
T Consensus        64 ~L~~L~L~~n~i~~~~~--~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~  132 (308)
T 1h6u_A           64 NLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--------LAGLSNLQ  132 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--------GTTCTTCC
T ss_pred             CCCEEEccCCcCCCChh--HccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--------hcCCCCCC
Confidence            67778888777777766  66776 7778888877776511111          2222322221        33456677


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      .|++++|.++.++. +..+++|+.|++++|.++.+++  +..++   +|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~---~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLS---KLTTLKADDNKISDISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT---TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred             EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCC---CCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence            77777777766654 6666777777777777665443  33333   37777777777766654 566677777777777


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++..+.  .+..+++|+.|++++|+++..|.
T Consensus       206 ~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          206 QISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             ccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            777663  26667777777777777766553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=4.7e-18  Score=147.14  Aligned_cols=154  Identities=27%  Similarity=0.425  Sum_probs=133.6

Q ss_pred             cEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc
Q psy17253         46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN  124 (227)
Q Consensus        46 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  124 (227)
                      .+++-++-+++++|.+    ++..++.|++++|.+++ ++..|.                   ++++|++|+|++|.|+.
T Consensus        34 ~~~~c~~~~l~~vP~~----lp~~~~~LdLs~N~i~~l~~~~f~-------------------~l~~L~~L~Ls~N~i~~   90 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYSFF-------------------SFPELQVLDLSRCEIQT   90 (635)
T ss_dssp             TEEECTTSCCSSCCSS----SCTTCCEEECTTSCCCEECTTTTT-------------------TCTTCCEEECTTCCCCE
T ss_pred             CEEECCCCCcCccCCC----CCcCCCEEEeeCCCCCCCCHHHHh-------------------CCCCCCEEECCCCcCCC
Confidence            4667777789999964    33489999999999998 777765                   36899999999999999


Q ss_pred             c-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCC-cc
Q psy17253        125 L-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTIS-PD  201 (227)
Q Consensus       125 l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~-~~  201 (227)
                      + +++|..+++|++|+|++|+++.++++.|.++.+   |++|++++|+++.++. .+..+++|+.|++++|.++.+. +.
T Consensus        91 i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~---L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A           91 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT---CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC---CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence            8 557899999999999999999998887777776   9999999999999874 5789999999999999998764 67


Q ss_pred             ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .++.++.|+.|++++|.++++++.
T Consensus       168 ~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          168 YFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGG
T ss_pred             hhccchhhhhhcccCccccccccc
Confidence            788999999999999999988754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=8.4e-19  Score=148.11  Aligned_cols=38  Identities=16%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      +++.|++++|.+..+++..|..++ +|+.|++++|.+..
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~   72 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYE   72 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCC
Confidence            466666666666666666666665 66666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.1e-18  Score=139.64  Aligned_cols=170  Identities=18%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcch---------------
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPST---------------   98 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~---------------   98 (227)
                      ++++|++++|.+..++...|..++ +|+.|++++|.+.. ++ ..+        +.|.+..++..               
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~  113 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR  113 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred             CCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence            688888888888888877788887 88888888888765 22 000        22222221100               


Q ss_pred             ------------------hhch-hhhhcCCCcccEEEccCCCcccc-cccc-cCCCCCCEEEcCCCcCcccCCCCCCCCC
Q psy17253         99 ------------------LDNL-KNQVQGVTNIFELKLQHNEIENL-DGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLD  157 (227)
Q Consensus        99 ------------------~~~~-~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~  157 (227)
                                        +..+ +..+..+++|+.|++++|.++.+ +..+ ..+++|+.|++++|.++.++...     
T Consensus       114 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----  188 (317)
T 3o53_A          114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----  188 (317)
T ss_dssp             EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----
T ss_pred             cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----
Confidence                              0000 00112234444444444444443 2222 23444555555555544442111     


Q ss_pred             CCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       158 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .+++|+.|++++|.++.++..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|+++
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCB
T ss_pred             ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCcc
Confidence            12335555555555555554455555555555555555554 334555555555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=6.1e-18  Score=126.23  Aligned_cols=149  Identities=17%  Similarity=0.233  Sum_probs=123.5

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      +++.|++++|.+..++  .+..++ +|+.|++++|.+...+                    .+..+++|+.|++++|.++
T Consensus        45 ~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~l~~n~~~~~~--------------------~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           45 SLTYITLANINVTDLT--GIEYAH-NIKDLTINNIHATNYN--------------------PISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             TCCEEEEESSCCSCCT--TGGGCT-TCSEEEEESCCCSCCG--------------------GGTTCTTCCEEEEECTTCB
T ss_pred             CccEEeccCCCccChH--HHhcCC-CCCEEEccCCCCCcch--------------------hhhcCCCCCEEEeECCccC
Confidence            6999999999999988  488887 9999999999765311                    1224689999999999999


Q ss_pred             c-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC-CcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        124 N-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       124 ~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      . .+..+..+++|+.|++++|.++...+..+..+++   |+.|++++|. ++.++ .+..+++|+.|++++|+++.+.  
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--  175 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK---VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--  175 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS---CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred             cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC---CCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--
Confidence            7 5778999999999999999998755555555555   9999999998 88887 5788999999999999999874  


Q ss_pred             ccCCCCCCCEEEcCCCcCcc
Q psy17253        202 DFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~  221 (227)
                      .+..+++|+.|++++|++.+
T Consensus       176 ~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TGGGCSSCCEEEECBC----
T ss_pred             HhccCCCCCEEEeeCcccCC
Confidence            68889999999999999864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=3.7e-18  Score=131.08  Aligned_cols=172  Identities=22%  Similarity=0.338  Sum_probs=136.4

Q ss_pred             cchhhcccCCCCC--CccEEEeCCCC-CCCCChhhhhcccccccEEEccC-CCCCC-CCCCC-----------CCCCCCC
Q psy17253         31 GQVVDALQDRFGN--DSISLKIAVSN-LNDLPSKTFQELGLQIVNLKLTK-NNLRP-DGAAL-----------RPIDVCA   94 (227)
Q Consensus        31 ~~~~~~~~~~~~~--~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~-----------~~~~l~~   94 (227)
                      +++....+..|..  +++.|++++|. +..++..+|..++ +|+.|++++ |.+.. +...|           ..+.+..
T Consensus        41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            4555555556655  89999999997 9999998899998 999999998 99998 76666           2333433


Q ss_pred             CcchhhchhhhhcCCCccc---EEEccCC-Ccccccc-cccCCCCCC-EEEcCCCcCcccCCCCCCCCCCCCcccEEEcC
Q psy17253         95 PPSTLDNLKNQVQGVTNIF---ELKLQHN-EIENLDG-ALMGIHGLS-RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ  168 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~l~~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~  168 (227)
                      +|.        +..+++|+   .|++++| .++.++. .|..+++|+ .|++++|.++.++...+.. .   +|+.|+++
T Consensus       120 lp~--------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~---~L~~L~L~  187 (239)
T 2xwt_C          120 FPD--------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T---KLDAVYLN  187 (239)
T ss_dssp             CCC--------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C---EEEEEECT
T ss_pred             ccc--------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C---CCCEEEcC
Confidence            332        33456676   9999999 9999854 688899999 9999999999887765544 3   49999999


Q ss_pred             CCC-CcCch-hhhcCC-CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253        169 HNE-IENLD-GALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       169 ~n~-~~~~~-~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  218 (227)
                      +|+ ++.++ ..+..+ ++|+.|++++|+++.+++.   .+++|+.|++.++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            995 99886 567788 8999999999999988654   56778899988763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=2.6e-18  Score=146.85  Aligned_cols=177  Identities=17%  Similarity=0.234  Sum_probs=98.8

Q ss_pred             cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-----------CCCCCCcchhhchh
Q psy17253         36 ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-----------IDVCAPPSTLDNLK  103 (227)
Q Consensus        36 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-----------~~l~~~~~~~~~~~  103 (227)
                      .+|..+..++++|++++|.+..+++..|..++ +|+.|++++|++.. ++..|..           +.+..++.      
T Consensus        19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------   91 (549)
T 2z81_A           19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS------   91 (549)
T ss_dssp             SCCSCCCTTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH------
T ss_pred             cccccCCCCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH------
Confidence            34445556899999999999988888899998 99999999999988 6655532           11111111      


Q ss_pred             hhhcCCCcccEEEccCCCcccc--cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhh
Q psy17253        104 NQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGAL  179 (227)
Q Consensus       104 ~~~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~  179 (227)
                      ..+.++++|+.|++++|.++.+  |..+..+++|+.|++++|. +..+++..+..+++   |+.|++++|.++. .|..+
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS---LNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE---EEEEEEEETTCCEECTTTT
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc---cCeeeccCCcccccChhhh
Confidence            1122334455555555544432  3344444445555554444 33333233333222   5555555555443 23344


Q ss_pred             cCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      ..+.+|+.|++++|.+..+....+..+++|+.|++++|.++++
T Consensus       169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             hccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            4444555555555544443222234467777888888877765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=2.5e-18  Score=149.62  Aligned_cols=176  Identities=14%  Similarity=0.173  Sum_probs=133.7

Q ss_pred             CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCC----------------------------------
Q psy17253         43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALR----------------------------------   88 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----------------------------------   88 (227)
                      ++++.|+++++++....+..+..++ .|+.|++++|.+......+.                                  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCcCChHHhcCc-cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            3699999999999855446789998 99999999997622000010                                  


Q ss_pred             -------------------------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc------------------c
Q psy17253         89 -------------------------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN------------------L  125 (227)
Q Consensus        89 -------------------------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------l  125 (227)
                                               ...+...-..+..++..++.+++|++|++++|.+++                  +
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                     000000001223355556677999999999999998                  8


Q ss_pred             ccccc--CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC-CcC--chhhhcCC------CCCCEEeCCCCc
Q psy17253        126 DGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE-IEN--LDGALMGI------HGLSRLDLSHNK  194 (227)
Q Consensus       126 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~--~~~~~~~~------~~L~~l~l~~n~  194 (227)
                      |..+.  .+++|++|++++|.+.+..+..+..+++   |+.|++++|. ++.  +|..+..+      ++|+.|++++|+
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE---MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS---CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCC---CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            99888  9999999999999988877777766665   9999999998 874  77666655      889999999999


Q ss_pred             cccCCcc--ccCCCCCCCEEEcCCCcCc-ccC
Q psy17253        195 LRTISPD--DFIGLDSLKMLDISHNLLT-TLE  223 (227)
Q Consensus       195 l~~~~~~--~~~~~~~L~~L~l~~n~l~-~lp  223 (227)
                      ++.+ |.  .++.+++|+.|++++|.++ .+|
T Consensus       317 l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          317 LKTF-PVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             CSSC-CCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             CCcc-CchhhhccCCCCCEEeCcCCcCccchh
Confidence            9866 55  7888999999999999988 777

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=7e-18  Score=134.49  Aligned_cols=173  Identities=19%  Similarity=0.134  Sum_probs=123.0

Q ss_pred             CccEEEeCCCCCCCCC----hhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcchhhc------hh--hhhcCC
Q psy17253         44 DSISLKIAVSNLNDLP----SKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPSTLDN------LK--NQVQGV  109 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~~~~~------~~--~~~~~l  109 (227)
                      ++++|++++|.+....    ...+..++ +|+.|++++|.+.. ++..|... .+..+.-+-..      ++  ..+..+
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            6777888888777532    23344555 77888888887776 55554221 12221111110      11  112357


Q ss_pred             CcccEEEccCCCcccccc----cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC
Q psy17253        110 TNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL  185 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L  185 (227)
                      ++|+.|++++|.++.++.    .+..+++|+.|++++|.++...+..+..+..+++|+.|++++|.++.+|..+.  ++|
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L  274 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKL  274 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCC
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCC
Confidence            899999999999987654    24678999999999999998866666666544569999999999998886553  789


Q ss_pred             CEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +.|++++|+++.+ + .+..++.|+.|++++|+++.
T Consensus       275 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          275 RVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence            9999999999987 3 26788999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=6.2e-18  Score=150.99  Aligned_cols=184  Identities=20%  Similarity=0.229  Sum_probs=138.0

Q ss_pred             cchhhcccCCCCC--CccEEEeCCCCCCC------------------CChhh-hhcccccccEEEccCCCCCC-CCCCC-
Q psy17253         31 GQVVDALQDRFGN--DSISLKIAVSNLND------------------LPSKT-FQELGLQIVNLKLTKNNLRP-DGAAL-   87 (227)
Q Consensus        31 ~~~~~~~~~~~~~--~l~~L~l~~~~l~~------------------~~~~~-~~~~~~~L~~L~l~~n~~~~-~~~~~-   87 (227)
                      +++.. +|..+..  +|+.|++++|.+..                  +|... |..++ +|+.|++++|.+.+ .+..| 
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHHh
Confidence            34444 5665655  89999999999998                  77653 44887 99999999999877 44433 


Q ss_pred             ----------CCCC-CC--CCcchhhchhhhhcCCCcccEEEccCCCcccccc--cccCCCCCCEEEcCCCcCcccCCCC
Q psy17253         88 ----------RPID-VC--APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDD  152 (227)
Q Consensus        88 ----------~~~~-l~--~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~  152 (227)
                                +.|. +.  .+|..+..+...+..+++|+.|++++|.++.+|.  .+..+++|+.|++++|.++.++  .
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~  590 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--A  590 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--C
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--h
Confidence                      3443 43  2555555554344456799999999999999988  8999999999999999998554  4


Q ss_pred             CCCCCCCCcccEEEcCCCCCcCchhhhcCCCC-CCEEeCCCCccccCCccccCCCCC--CCEEEcCCCcCccc
Q psy17253        153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHG-LSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLTTL  222 (227)
Q Consensus       153 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~l  222 (227)
                      +..+   ++|+.|++++|.+..+|..+..+++ |+.|++++|++..+ |..+..+..  |+.|++++|.+++.
T Consensus       591 ~~~L---~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          591 FGTN---VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CCTT---SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             hcCC---CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCc
Confidence            5444   4499999999999988877888888 99999999998866 555555533  77777777776554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=3.4e-17  Score=139.12  Aligned_cols=170  Identities=15%  Similarity=0.191  Sum_probs=117.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-CCCCCCc------chhhchhhhhcCCCcccEE
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-IDVCAPP------STLDNLKNQVQGVTNIFEL  115 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~------~~~~~~~~~~~~l~~L~~L  115 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.+ .+..+.. ..+..+.      ..+..++..+..+++|+.|
T Consensus       303 ~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC--PSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCSEEEEESSCCCCCCC--CSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             ceeEEEcCCCccccccc--hhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            35666666666554432  13343 56666666666655 3222211 0111110      0222344456678899999


Q ss_pred             EccCCCccc-ccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        116 KLQHNEIEN-LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       116 ~l~~n~l~~-l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      ++++|.++. +|. .+..+++|+.|++++|.+++..+..+.     ++|+.|++++|+++.+|..+..+++|+.|++++|
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-----PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-----TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-----ccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence            999999988 765 477788999999999998765544332     3499999999999999877778999999999999


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +++.+++..+..+++|+.|++++|+++.
T Consensus       455 ~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          455 QLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9998866668899999999999998763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=7e-18  Score=134.62  Aligned_cols=166  Identities=19%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             CccEEEeCCCCCCC-CChhhh-hcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSNLND-LPSKTF-QELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~l~~-~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      ++++|++++|.+.. +|...| ..++ +|+.|++++|.+.+.            |..+..+...  .+++|++|++++|.
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~------------~~~~~~l~~~--~~~~L~~L~L~~N~  160 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATR------------DAWLAELQQW--LKPGLKVLSIAQAH  160 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSS------------SSHHHHHHTT--CCTTCCEEEEESCS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcch------------hHHHHHHHHh--hcCCCcEEEeeCCC
Confidence            79999999999984 565543 7777 999999999998751            1112111100  12677777888777


Q ss_pred             ccccc-ccccCCCCCCEEEcCCCcCcccC--CCCCCCCCCCCcccEEEcCCCCCcCch----hhhcCCCCCCEEeCCCCc
Q psy17253        122 IENLD-GALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSVTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       122 l~~l~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~L~~l~l~~n~  194 (227)
                      ++.++ ..+..+++|+.|++++|.+.+..  +..+ ....+++|+.|++++|.++.++    ..+..+++|+.|++++|+
T Consensus       161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CccchHHHhccCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            77764 66777777788887777754321  0011 0122334777777777777443    222456777777777777


Q ss_pred             cccCCc-cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        195 LRTISP-DDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       195 l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +....+ ..+..+++|+.|++++|.++++|..
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence            776543 3455567777777777777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=4.2e-17  Score=141.96  Aligned_cols=161  Identities=16%  Similarity=0.293  Sum_probs=116.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|++++|.+..+|...+..++ +|+.|++++|.+.. +...|...            ......+++|+.|++++|.+
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~~------------~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDE------------NENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCSBCCSSSSEET------------TEECTTGGGCCEEECCSSCC
T ss_pred             CCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCCCcCHHHhccc------------cccccccCCccEEECcCCcC
Confidence            566777777777777766666665 67777777777665 44443210            00011234899999999999


Q ss_pred             cccccccc--CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcC------CCCCc-CchhhhcCCCCCCEEeCCCC
Q psy17253        123 ENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ------HNEIE-NLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       123 ~~l~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~------~n~~~-~~~~~~~~~~~L~~l~l~~n  193 (227)
                      +.+|..+.  .+++|+.|++++|.++++ +..+..+++   |+.|+++      +|.+. .+|..+..+++|+.|++++|
T Consensus       501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~---L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          501 TKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSST---LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSS---CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCC---CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            98888887  889999999999999884 445555544   9999995      45544 66777888999999999999


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++..++ ..+.  +.|+.|++++|++..++.
T Consensus       577 ~l~~ip-~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          577 DIRKVN-EKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CCCBCC-SCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cCCccC-HhHh--CcCCEEECcCCCCccccH
Confidence            997774 4344  789999999998887664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=4.3e-17  Score=129.89  Aligned_cols=160  Identities=23%  Similarity=0.374  Sum_probs=128.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI  112 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L  112 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.. +. ..          +.+.+..++        .+..+++|
T Consensus        42 ~L~~L~l~~~~i~~l~~--~~~l~-~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L  109 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIEG--VQYLN-NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--------AIAGLQSI  109 (308)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--------GGTTCTTC
T ss_pred             CcCEEEeeCCCccCchh--hhccC-CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--------hhcCCCCC
Confidence            79999999999999873  78887 99999999999987 43 11          333333332        24457889


Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      +.|++++|.++.++. +..+++|+.|++++|.++.+++  +..+   ++|+.|++++|.++.++. +..+++|+.|++++
T Consensus       110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD  182 (308)
T ss_dssp             CEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence            999999999888765 7888999999999998887654  4444   449999999999988776 77888999999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      |+++.+.+  +..+++|+.|++++|.++++++
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             CccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence            99988744  7888999999999999988874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.2e-17  Score=128.93  Aligned_cols=160  Identities=23%  Similarity=0.317  Sum_probs=102.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI  112 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L  112 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.. ++ ..          +.|.+..++        .+..+++|
T Consensus        47 ~L~~L~l~~~~i~~~~~--~~~l~-~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L  114 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--------SLKDLKKL  114 (291)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--------GGTTCTTC
T ss_pred             cccEEEccCCCcccChh--HhcCC-CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--------hhccCCCC
Confidence            46666666666666543  55555 66666666666654 22 10          111121111        13346778


Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      +.|++++|.++.++ .+..+++|+.|++++|.++.+  ..+..+   ++|+.|++++|.++.++. +..+++|+.|++++
T Consensus       115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l---~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccC---CCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence            88888888777764 466777888888888877765  233333   348888888888777765 67777888888888


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      |.++.+ + .+..+++|+.|++++|+++..|.
T Consensus       188 N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          188 NHISDL-R-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             SCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence            888776 2 37778888888888887766553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=2.6e-17  Score=128.30  Aligned_cols=147  Identities=24%  Similarity=0.337  Sum_probs=122.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|++++|.+..++  .+..++ +|+.|++++|.+.. ++                     +.++++|+.|++++|.+
T Consensus        42 ~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~L~~N~i~~~~~---------------------l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLA--GMQFFT-NLKELHLSHNQISDLSP---------------------LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             TCSEEECTTSCCCCCT--TGGGCT-TCCEEECCSSCCCCCGG---------------------GTTCSSCCEEECCSSCC
T ss_pred             cCcEEECcCCCcccch--HHhhCC-CCCEEECCCCccCCChh---------------------hccCCCCCEEECCCCcc
Confidence            6899999999999887  477887 99999999999875 22                     22468999999999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      +.++....  ++|+.|++++|.++.++  .+..++   +|+.|++++|+++.++ .+..+++|+.|++++|+++.+  ..
T Consensus        98 ~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~---~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A           98 KNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLK---NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             SCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCT---TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             CCcCcccc--CcccEEEccCCccCCCh--hhcCcc---cccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HH
Confidence            99876333  89999999999998764  344444   4999999999999886 578889999999999999988  67


Q ss_pred             cCCCCCCCEEEcCCCcCcccCC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +..+++|+.|++++|.++..|.
T Consensus       168 l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECCCE
T ss_pred             hccCCCCCEEeCCCCcccCCcc
Confidence            8899999999999999887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=149.54  Aligned_cols=171  Identities=21%  Similarity=0.269  Sum_probs=115.4

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCCCCCCCCCCcch
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAALRPIDVCAPPST   98 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~~~~~   98 (227)
                      .+.|...    ++ ..+|. .+.+++.|++++|.+..+....|..++ +|+.|++++|....  ++..|.          
T Consensus         8 ~~dcs~~----~L-~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~----------   70 (844)
T 3j0a_A            8 IAFYRFC----NL-TQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFR----------   70 (844)
T ss_dssp             EEEESCC----CS-SCCCS-SCTTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTS----------
T ss_pred             EEEccCC----CC-CCCCC-CCCCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhc----------
Confidence            7888652    33 33444 667899999999999999888899998 99999999996543  454443          


Q ss_pred             hhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCC--CCCCCCCCCcccEEEcCCCCCcCc
Q psy17253         99 LDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD--DFIGLDSVTNIFELKLQHNEIENL  175 (227)
Q Consensus        99 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~  175 (227)
                               ++++|+.|+|++|.++.+ |..|..+++|+.|++++|.+.+..+.  .+..++   +|+.|++++|.++.+
T Consensus        71 ---------~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~---~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           71 ---------NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK---ALTRLDLSKNQIRSL  138 (844)
T ss_dssp             ---------SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS---SCCEEEEESCCCCCC
T ss_pred             ---------CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC---CCCEEECCCCccccc
Confidence                     346777777777777765 66777777777777777777653222  233343   377777777777654


Q ss_pred             h--hhhcCCCCCCEEeCCCCccccCCccccCCC--CCCCEEEcCCCcCc
Q psy17253        176 D--GALMGIHGLSRLDLSHNKLRTISPDDFIGL--DSLKMLDISHNLLT  220 (227)
Q Consensus       176 ~--~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~  220 (227)
                      +  ..+..+++|+.|++++|.++.+.+..+..+  ++|+.|++++|.+.
T Consensus       139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            2  456677777777777777766555444443  44444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=7e-17  Score=122.57  Aligned_cols=148  Identities=26%  Similarity=0.407  Sum_probs=122.7

Q ss_pred             ccEEEeCCCCCCCCChhhhhccccccc--EEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIV--NLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~--~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      -+.++.+++.+..+|..    +  .-.  .|++++|.+.. +...|.                   ++++|+.|++++|.
T Consensus        13 ~~~v~c~~~~l~~iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~-------------------~l~~L~~L~Ls~N~   67 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTN----L--PETITEIRLEQNTIKVIPPGAFS-------------------PYKKLRRIDLSNNQ   67 (220)
T ss_dssp             TTEEECTTSCCSSCCSS----C--CTTCCEEECCSSCCCEECTTSST-------------------TCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCcCcCCCc----c--CcCCCEEECCCCcCCCcCHhHhh-------------------CCCCCCEEECCCCc
Confidence            35788888888888752    1  122  26777777776 554443                   35789999999999


Q ss_pred             cccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC
Q psy17253        122 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS  199 (227)
Q Consensus       122 l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~  199 (227)
                      ++.+ |..|..+++|++|++++|.++.+++..+..+.+   |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.
T Consensus        68 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           68 ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS---LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC---CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            9987 778999999999999999999888777766666   999999999999875 67788999999999999999998


Q ss_pred             ccccCCCCCCCEEEcCCCcCc
Q psy17253        200 PDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       200 ~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +..|..+++|+.|++++|+++
T Consensus       145 ~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          145 KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCEE
T ss_pred             HHHHhCCCCCCEEEeCCCCcC
Confidence            888999999999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=7.6e-17  Score=119.97  Aligned_cols=108  Identities=26%  Similarity=0.396  Sum_probs=94.7

Q ss_pred             CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEE
Q psy17253        110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRL  188 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l  188 (227)
                      ++++.|++++|.++.+|..|..+++|+.|++++|.++.+++..|..+.+   |+.|++++|.++.++ ..+..+++|+.|
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~---L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ---LLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC---CCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            4689999999999988888999999999999999999888777776666   999999999999886 567888999999


Q ss_pred             eCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      ++++|.++.+.+..|..+++|+.|++++|++.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999999987778899999999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=8.7e-17  Score=138.02  Aligned_cols=155  Identities=17%  Similarity=0.209  Sum_probs=110.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      ++++|++++|.+.......|..++ +|+.|++++|++..                +..++..+.++++|+.|++++|.++
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~----------------~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKN----------------FFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCB----------------TTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCC----------------cccchhhhcCCCCCCEEECCCCcCC
Confidence            455555555555544334444444 55555555555442                1122233445788999999999988


Q ss_pred             c-ccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        124 N-LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       124 ~-l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      . +|. .+..+++|+.|++++|.+++..+..+.     ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+++.
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-----PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc-----CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence            7 654 477788899999999988765443321     348999999999998887677889999999999999988666


Q ss_pred             ccCCCCCCCEEEcCCCcCc
Q psy17253        202 DFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~  220 (227)
                      .+..+++|+.|++++|+++
T Consensus       492 ~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             STTTCTTCCCEECCSCCBC
T ss_pred             HHhcCCCCCEEEecCCCcC
Confidence            6888999999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=7.3e-17  Score=139.46  Aligned_cols=155  Identities=26%  Similarity=0.402  Sum_probs=136.0

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      -..++.++++++.+|....   . +++.|++++|.+.. ++..|.                   ++++|+.|++++|.++
T Consensus        13 ~~~~~c~~~~l~~ip~~~~---~-~l~~L~Ls~n~l~~~~~~~~~-------------------~l~~L~~L~Ls~n~l~   69 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP---S-STKNIDLSFNPLKILKSYSFS-------------------NFSELQWLDLSRCEIE   69 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC---T-TCCEEECTTSCCCEECTTTTT-------------------TCTTCCEEECTTCCCC
T ss_pred             CCceEccCCCcccCCCCCC---C-CcCEEECCCCCcCEeChhhcc-------------------CCccCcEEeCCCCccc
Confidence            4589999999999997543   3 89999999999987 665554                   3689999999999999


Q ss_pred             cc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC-c
Q psy17253        124 NL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS-P  200 (227)
Q Consensus       124 ~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~-~  200 (227)
                      .+ |..|..+++|++|++++|.++...+..+..+++   |+.|++++|.++.++ ..+..+.+|+.|++++|.+..+. |
T Consensus        70 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A           70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS---LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT---CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc---CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence            98 668899999999999999999998888877766   999999999999887 66889999999999999998744 7


Q ss_pred             cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        201 DDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      ..++.+++|+.|++++|.++++++.
T Consensus       147 ~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          147 AYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             GGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             HhHhhcCCCCEEEccCCcceecChh
Confidence            8899999999999999999998764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=5.3e-17  Score=128.35  Aligned_cols=139  Identities=22%  Similarity=0.332  Sum_probs=111.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CC--------CCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AA--------LRPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~--------~~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.. +. ..        ++.|.+..++        .+..+++|+
T Consensus        69 ~L~~L~L~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--------~l~~l~~L~  137 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--------GLVHLPQLE  137 (291)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--------GGGGCTTCC
T ss_pred             CCCEEEccCCccCCCcc--cccCC-CCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--------hhcCCCCCC
Confidence            78999999999998876  77887 89999999998887 32 11        1334444332        244578999


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      .|++++|.++.+ ..+..+++|+.|++++|.++...+  +..++   +|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~---~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLT---KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT---TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCC---ccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence            999999999998 568899999999999999988764  44454   49999999999998875 788999999999999


Q ss_pred             ccccCCc
Q psy17253        194 KLRTISP  200 (227)
Q Consensus       194 ~l~~~~~  200 (227)
                      ++...+.
T Consensus       211 ~i~~~~~  217 (291)
T 1h6t_A          211 ECLNKPI  217 (291)
T ss_dssp             EEECCCE
T ss_pred             cccCCcc
Confidence            9887543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.1e-16  Score=142.90  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=78.2

Q ss_pred             CCCcccEEEccCCCcccccccccCC--------CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGI--------HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL  179 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  179 (227)
                      .+++|+.|++++|.++.+|..+...        ++|+.|++++|.++.++. .+. ...+++|+.|++++|.++.+|..+
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~-~~~l~~L~~L~Ls~N~L~~lp~~l  772 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFR-ATTLPYLSNMDVSYNCFSSFPTQP  772 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGS-TTTCTTCCEEECCSSCCSSCCCGG
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH-Hhh-hccCCCcCEEEeCCCCCCccchhh
Confidence            4567777777777777665544332        267777777777765432 222 012334777888888777777667


Q ss_pred             cCCCCCCEEeCCC------CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        180 MGIHGLSRLDLSH------NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       180 ~~~~~L~~l~l~~------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      ..+++|+.|++++      |++....|..+..+++|+.|++++|.+..+|..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~  824 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK  824 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence            7777788887765      555555577777888888888888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=2.7e-18  Score=146.74  Aligned_cols=185  Identities=18%  Similarity=0.226  Sum_probs=144.1

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC   93 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~   93 (227)
                      .+.+++....+..+..  ++++|++++|.+..+++.+|..++ +|+.|++++|.+.+ ++..|           +.|.+.
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence            3455666666666665  899999999999999888899888 99999999999988 55433           333333


Q ss_pred             CCcchhhchhhhhcCCCcccEEEccCCC-ccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC
Q psy17253         94 APPSTLDNLKNQVQGVTNIFELKLQHNE-IENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE  171 (227)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  171 (227)
                      .++     .+..+.++++|+.|++++|. ++.++ ..+..+++|+.|++++|.+++..+..+..+++   |+.|++++|.
T Consensus       112 ~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~  183 (549)
T 2z81_A          112 TLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHLTLHLSE  183 (549)
T ss_dssp             SSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE---EEEEEEECSB
T ss_pred             ccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc---CceEecccCc
Confidence            221     12234567899999999998 66675 57899999999999999999887777666655   9999999999


Q ss_pred             CcCchhhh-cCCCCCCEEeCCCCccccCC---ccccCCCCCCCEEEcCCCcCcc
Q psy17253        172 IENLDGAL-MGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       172 ~~~~~~~~-~~~~~L~~l~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +..++..+ ..+++|+.|++++|++....   ......++.|+.|++++|.+++
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            98888544 67899999999999998753   2334567889999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=1.8e-16  Score=127.99  Aligned_cols=163  Identities=24%  Similarity=0.342  Sum_probs=106.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      ++++|++++|.+..++.  +..++ +|+.|++++|.+.. +. ..+        ..+.+..++.        +..+++|+
T Consensus       156 ~L~~L~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~L~  224 (347)
T 4fmz_A          156 GLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--------VANMTRLN  224 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------GGGCTTCC
T ss_pred             CCcEEEecCCCcCCchh--hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCch--------hhcCCcCC
Confidence            45566666665555554  55555 66666666666655 22 000        1222222111        34567888


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      .|++++|.++.++. +..+++|+.|++++|.++.++  .+..+   ++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus       225 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l---~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          225 SLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDL---TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTC---TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred             EEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcC---CCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC
Confidence            88888888877766 777788888888888777652  33333   34888888888877764 3567778888888888


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++....+..+..+++|+.|++++|.++++++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC
Confidence            8877767777778888888888888877765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.6e-16  Score=136.02  Aligned_cols=156  Identities=18%  Similarity=0.202  Sum_probs=120.2

Q ss_pred             ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhc
Q psy17253         37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQ  107 (227)
Q Consensus        37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~  107 (227)
                      +|..+..+++.|++++|.|+.+| .   .++ +|+.|++++|.++. +. ..        +.|.+..+|.          
T Consensus        74 lp~~l~~~L~~L~Ls~N~l~~ip-~---~l~-~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~----------  137 (571)
T 3cvr_A           74 LPDNLPPQITVLEITQNALISLP-E---LPA-SLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE----------  137 (571)
T ss_dssp             CCSCCCTTCSEEECCSSCCSCCC-C---CCT-TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC----------
T ss_pred             cCHhHcCCCCEEECcCCCCcccc-c---ccC-CCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC----------
Confidence            45545568999999999999998 2   345 89999999999998 55 22        3444444443          


Q ss_pred             CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC--
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL--  185 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L--  185 (227)
                      .+++|+.|++++|.++.+|.   .+++|+.|++++|.++.++.  +.     ++|+.|++++|.++.+|. +..  +|  
T Consensus       138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~-----~~L~~L~Ls~N~L~~lp~-~~~--~L~~  204 (571)
T 3cvr_A          138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP-----ESLEALDVSTNLLESLPA-VPV--RNHH  204 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC-----TTCCEEECCSSCCSSCCC-CC-------
T ss_pred             cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh-----CCCCEEECcCCCCCchhh-HHH--hhhc
Confidence            35789999999999988876   56789999999999988654  43     449999999999998887 543  66  


Q ss_pred             -----CEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        186 -----SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       186 -----~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                           +.|++++|+++.+ |..+..+++|+.|++++|++++.
T Consensus       205 ~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ---CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred             ccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCc
Confidence                 9999999999988 44555599999999999998653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.8e-16  Score=117.97  Aligned_cols=134  Identities=19%  Similarity=0.392  Sum_probs=107.9

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|...     .+.|...    .+ ..+|..++.+++.|++++|.+..+| ..|..++ +|+.|++++|.++. ++
T Consensus         4 CP~~C~C~~~-----~l~~~~~----~l-~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~   71 (193)
T 2wfh_A            4 CPTECTCLDT-----VVRCSNK----GL-KVLPKGIPRDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSN   71 (193)
T ss_dssp             CCTTCEEETT-----EEECTTS----CC-SSCCSCCCTTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCT
T ss_pred             CCCCCEeCCC-----EEEcCCC----CC-CcCCCCCCCCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCH
Confidence            4555777633     6888662    33 3445556668999999999999998 6788898 99999999999988 66


Q ss_pred             CCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc
Q psy17253         85 AALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF  163 (227)
Q Consensus        85 ~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~  163 (227)
                      ..|.                   ++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.++...+..+++   |+
T Consensus        72 ~~f~-------------------~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~  129 (193)
T 2wfh_A           72 QSFS-------------------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA---LS  129 (193)
T ss_dssp             TTTT-------------------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT---CC
T ss_pred             hHcc-------------------CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc---cc
Confidence            6554                   3588999999999999984 57889999999999999999888777766665   99


Q ss_pred             EEEcCCCCCc
Q psy17253        164 ELKLQHNEIE  173 (227)
Q Consensus       164 ~l~l~~n~~~  173 (227)
                      .|++++|.+.
T Consensus       130 ~L~L~~N~~~  139 (193)
T 2wfh_A          130 HLAIGANPLY  139 (193)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEeCCCCee
Confidence            9999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.4e-16  Score=118.47  Aligned_cols=109  Identities=30%  Similarity=0.519  Sum_probs=92.0

Q ss_pred             CcccEEEccCCCcccccc--cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253        110 TNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS  186 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~  186 (227)
                      .+++.|++++|.++.++.  .|..+++|+.|++++|.++++.+..+..+.+   |+.|++++|.++.++ ..+..+++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH---IQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT---CCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc---CCEEECCCCcCCccCHHHhcCCCCCC
Confidence            368899999999988864  3788899999999999998887777766666   899999999998776 4577888999


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      .|++++|+++.+.+..+..+++|+.|++++|+++.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999999998888888999999999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=6.8e-17  Score=129.19  Aligned_cols=104  Identities=25%  Similarity=0.302  Sum_probs=88.2

Q ss_pred             CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCE
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSR  187 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~  187 (227)
                      .+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+++. +..++   +|+.|++++|.++.+|..+..+++|+.
T Consensus       167 ~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~---~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA---GVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             GTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT---TCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             ccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC---cccEEECcCCcccchhhHhhcCCCCCE
Confidence            578999999999999998654 3589999999999999988654 54444   499999999999999988888999999


Q ss_pred             EeCCCCccc-cCCccccCCCCCCCEEEcCC
Q psy17253        188 LDLSHNKLR-TISPDDFIGLDSLKMLDISH  216 (227)
Q Consensus       188 l~l~~n~l~-~~~~~~~~~~~~L~~L~l~~  216 (227)
                      +++++|.+. ...+..+..++.|+.+++.+
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCC
Confidence            999999998 44467788888888888773

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=5.9e-17  Score=129.12  Aligned_cols=116  Identities=21%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcc---cCCCCCCCCCCCCcccEEEcCCCCCcCchh----hh
Q psy17253        108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT---ISPDDFIGLDSVTNIFELKLQHNEIENLDG----AL  179 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~  179 (227)
                      .+++|+.|++++|.++.+ +..+..+++|++|++++|.+.+   .....+  ...+++|+.|++++|.++.++.    .+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC--PHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--TTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--hhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            578899999999999887 4678888999999999998754   222111  1233448888888888876654    23


Q ss_pred             cCCCCCCEEeCCCCccccCCccccCCC---CCCCEEEcCCCcCcccCCC
Q psy17253        180 MGIHGLSRLDLSHNKLRTISPDDFIGL---DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~lp~~  225 (227)
                      ..+++|+.|++++|++....|..+..+   ++|+.|++++|.++++|..
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence            566788888888888887755555554   5788888888888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=2.8e-16  Score=135.99  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253         36 ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        36 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      .+|..++.+++.|++++|.+..+|.    .++ +|+.|++++|.++.
T Consensus        54 ~lp~~l~~~L~~L~L~~N~l~~lp~----~l~-~L~~L~Ls~N~l~~   95 (622)
T 3g06_A           54 TLPDCLPAHITTLVIPDNNLTSLPA----LPP-ELRTLEVSGNQLTS   95 (622)
T ss_dssp             CCCSCCCTTCSEEEECSCCCSCCCC----CCT-TCCEEEECSCCCSC
T ss_pred             ccChhhCCCCcEEEecCCCCCCCCC----cCC-CCCEEEcCCCcCCc
Confidence            3344444577788888877777765    234 67777777777766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=4.1e-17  Score=139.88  Aligned_cols=175  Identities=19%  Similarity=0.232  Sum_probs=112.8

Q ss_pred             CccEEEeCCCCCCCCC--hhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcch---hhch--hhhhcCCCcccEE
Q psy17253         44 DSISLKIAVSNLNDLP--SKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPST---LDNL--KNQVQGVTNIFEL  115 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~---~~~~--~~~~~~l~~L~~L  115 (227)
                      +++.|++++|.+..+.  ...+..++ +|+.|++++|.+.. +........+..+.-+   +...  ...+..+++|+.|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            5777777777776553  34566666 77777777777665 3321111111111100   0011  0123456778888


Q ss_pred             EccCCCcccc-cccccCCCCCCEEEcCCCcCc-ccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCC
Q psy17253        116 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSH  192 (227)
Q Consensus       116 ~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~  192 (227)
                      ++++|.++.. +..+..+++|+.|++++|.+. ...+..+..+++   |+.|++++|.++.+ |..+..+++|+.|++++
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC---CCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            8888877764 566777788888888888776 233444444444   88888888888766 46677778888888888


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      |+++.+.+..+..+++|+.|++++|+++.-
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            888887777778888888888888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=9e-17  Score=135.69  Aligned_cols=182  Identities=16%  Similarity=0.185  Sum_probs=111.5

Q ss_pred             ccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC-CC-----CCCCCCCCcch--
Q psy17253         30 FGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA-AL-----RPIDVCAPPST--   98 (227)
Q Consensus        30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~-~~-----~~~~l~~~~~~--   98 (227)
                      .+.+....+..|..  +|+.|++++|.+..+++  |..++ +|+.|++++|.+.. +.. .+     +.|.+..++..  
T Consensus        43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l  119 (487)
T 3oja_A           43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG  119 (487)
T ss_dssp             SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCC
T ss_pred             CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcccc
Confidence            34455555555554  78888888888876554  66776 78888887777765 321 11     33333332211  


Q ss_pred             ------------hhch-hhhhcCCCcccEEEccCCCcccc-ccccc-CCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc
Q psy17253         99 ------------LDNL-KNQVQGVTNIFELKLQHNEIENL-DGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF  163 (227)
Q Consensus        99 ------------~~~~-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~  163 (227)
                                  +..+ +..+..+++|+.|++++|.++.+ |..+. .+++|+.|++++|.+++.+...     .+++|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-----~l~~L~  194 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----VFAKLK  194 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----CCTTCC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-----cCCCCC
Confidence                        0011 11223456677777777777664 44444 5667777777777776664321     234477


Q ss_pred             EEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       164 ~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .|++++|.++.+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.
T Consensus       195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence            77777777777765566777777777777777766 445666777777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3.9e-16  Score=134.79  Aligned_cols=149  Identities=25%  Similarity=0.385  Sum_probs=116.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE  123 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  123 (227)
                      +|+.|++++|.+..++.  +..++ +|+.|++++|.+...            +        .+..+++|+.|+|++|.++
T Consensus        66 ~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l------------~--------~l~~l~~L~~L~Ls~N~l~  122 (605)
T 1m9s_A           66 NVTKLFLNGNKLTDIKP--LTNLK-NLGWLFLDENKIKDL------------S--------SLKDLKKLKSLSLEHNGIS  122 (605)
T ss_dssp             TCCEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCC------------T--------TSTTCTTCCEEECTTSCCC
T ss_pred             CCCEEEeeCCCCCCChh--hccCC-CCCEEECcCCCCCCC------------h--------hhccCCCCCEEEecCCCCC
Confidence            57777777777777665  66666 777777777776541            1        1224688999999999998


Q ss_pred             cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcccc
Q psy17253        124 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF  203 (227)
Q Consensus       124 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~  203 (227)
                      .++. +..+++|+.|+|++|.+..+  ..+..+   ++|+.|+|++|.+..++. +..+++|+.|++++|.++.+  ..+
T Consensus       123 ~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l  193 (605)
T 1m9s_A          123 DING-LVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RAL  193 (605)
T ss_dssp             CCGG-GGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGG
T ss_pred             CCcc-ccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHH
Confidence            8754 78889999999999998876  244444   449999999999988766 78889999999999999887  358


Q ss_pred             CCCCCCCEEEcCCCcCcccCC
Q psy17253        204 IGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       204 ~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ..+++|+.|++++|.+...|.
T Consensus       194 ~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TTCTTCSEEECCSEEEECCCC
T ss_pred             ccCCCCCEEEccCCcCcCCcc
Confidence            889999999999999887664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=6.1e-16  Score=129.89  Aligned_cols=162  Identities=20%  Similarity=0.397  Sum_probs=99.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +++.|++++|.+..++  .+..++ +|+.|++++|.+.. ++ ..+        +.+.+..++.        +..+++|+
T Consensus       222 ~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~  290 (466)
T 1o6v_A          222 NLDELSLNGNQLKDIG--TLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------LAGLTALT  290 (466)
T ss_dssp             TCCEEECCSSCCCCCG--GGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------GTTCTTCS
T ss_pred             CCCEEECCCCCcccch--hhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------ccCCCccC
Confidence            4555555555555543  244454 56666666665554 21 000        2222222211        33456777


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      .|++++|.++.++. +..+++|+.|++++|.+.+..+  +..   +++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus       291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~---l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          291 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSS---LTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN  363 (466)
T ss_dssp             EEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGG---CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred             eEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hcc---CccCCEeECCCCccCCch-hhccCCCCCEEeCCCC
Confidence            77777777766654 5667777777777777766543  333   344777888888777664 4667778888888888


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +++++.+  +..++.|+.|++++|.++.+|..
T Consensus       364 ~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          364 QISDLTP--LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             CCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred             ccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence            8877755  77788888888888888876654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=6.9e-16  Score=124.58  Aligned_cols=159  Identities=20%  Similarity=0.353  Sum_probs=125.2

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.. +. ..+        ..+.+..++.        +..+++|+
T Consensus       178 ~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~l~~L~  246 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--------LANLSQLT  246 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCC
T ss_pred             CCCEEEccCCccccccc--ccCCC-ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--------hhcCCCCC
Confidence            79999999999988876  77777 88999999888876 32 111        3333433332        44678999


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH  192 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~  192 (227)
                      .|++++|.++.++ .+..+++|+.|++++|.++.++  .+..+   ++|+.|++++|.++..+ ..+..+++|+.|++++
T Consensus       247 ~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS--VLNNL---SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGGGC---TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred             EEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh--hhcCC---CCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence            9999999999874 5888999999999999998763  34444   45999999999998665 6788999999999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        193 NKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      |+++.+.+  +..++.|+.|++++|.+++
T Consensus       321 n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          321 NHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             SSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             CccccccC--hhhhhccceeehhhhcccC
Confidence            99998855  8889999999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=6.2e-16  Score=118.04  Aligned_cols=150  Identities=23%  Similarity=0.298  Sum_probs=125.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhccccccc--EEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIV--NLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHN  120 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~--~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n  120 (227)
                      ..+.++.+++.+..+|...      .-.  .|++++|.+.. ++..|.                   ++++|+.|++++|
T Consensus        20 s~~~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~L~~N   74 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI------PTNAQILYLHDNQITKLEPGVFD-------------------SLINLKELYLGSN   74 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC------CTTCSEEECCSSCCCCCCTTTTT-------------------TCTTCCEEECCSS
T ss_pred             eCCEeEccCCCcCccCCCC------CCCCCEEEcCCCccCccCHHHhh-------------------CccCCcEEECCCC
Confidence            4567888998888888521      122  26777888776 444443                   3588999999999


Q ss_pred             Cccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCC
Q psy17253        121 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS  199 (227)
Q Consensus       121 ~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~  199 (227)
                      .++.++ ..|..+++|+.|++++|.++.+++..+..+++   |+.|++++|.++.+|..+..+++|+.|++++|+++.+.
T Consensus        75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~---L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH---LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh---hCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence            999986 45788999999999999999988776666666   99999999999999988899999999999999999998


Q ss_pred             ccccCCCCCCCEEEcCCCcCcc
Q psy17253        200 PDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       200 ~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +..|..+++|+.|++++|+++.
T Consensus       152 ~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          152 HGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTTTCTTCCEEECTTSCBCT
T ss_pred             HHHHhCCCCCCEEEeeCCCccC
Confidence            8889999999999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=135.20  Aligned_cols=143  Identities=19%  Similarity=0.284  Sum_probs=99.7

Q ss_pred             EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL   99 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~   99 (227)
                      .+.|..    +++. .+|..++.++++|++++|.+..+++..|..++ +|+.|++++|.+.. .+..|.           
T Consensus         4 ~l~ls~----n~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~-----------   66 (520)
T 2z7x_B            4 LVDRSK----NGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFK-----------   66 (520)
T ss_dssp             EEECTT----SCCS-SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGT-----------
T ss_pred             eEecCC----CCcc-cccccccccccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhh-----------
Confidence            455544    3444 35555567899999999999999999999998 99999999999886 444432           


Q ss_pred             hchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccC-CCCCCCCCCCCcccEEEcCCCCCcCchhh
Q psy17253        100 DNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSVTNIFELKLQHNEIENLDGA  178 (227)
Q Consensus       100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  178 (227)
                              ++++|++|++++|.++.+|..  .+++|++|++++|.+++.. +..++.+++   |+.|++++|.++.  ..
T Consensus        67 --------~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~---L~~L~L~~n~l~~--~~  131 (520)
T 2z7x_B           67 --------FNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEK--SS  131 (520)
T ss_dssp             --------TCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT---CCEEEEEESSCCG--GG
T ss_pred             --------cccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc---ceEEEecCcccch--hh
Confidence                    356777777777777777665  6777777777777776642 344544444   7777777777654  22


Q ss_pred             hcCCCCC--CEEeCCCCcc
Q psy17253        179 LMGIHGL--SRLDLSHNKL  195 (227)
Q Consensus       179 ~~~~~~L--~~l~l~~n~l  195 (227)
                      +..+++|  +.|++++|.+
T Consensus       132 ~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          132 VLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             GGGGTTSCEEEEEEEECTT
T ss_pred             ccccccceeeEEEeecccc
Confidence            3444555  6666666666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=8.5e-17  Score=144.18  Aligned_cols=185  Identities=23%  Similarity=0.285  Sum_probs=96.8

Q ss_pred             chhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcc
Q psy17253         32 QVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPS   97 (227)
Q Consensus        32 ~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~   97 (227)
                      .+....+..|..  +++.|++++|.+..++..+|..++ +|+.|++++|.+.. .+..|           +.|.+..++.
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            344444444443  666677777766666666666665 66666666666665 44433           2233333222


Q ss_pred             hhhchhhhhcCCCcccEEEccCCCccc-------------------ccc----------------------cccCCCCCC
Q psy17253         98 TLDNLKNQVQGVTNIFELKLQHNEIEN-------------------LDG----------------------ALMGIHGLS  136 (227)
Q Consensus        98 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------l~~----------------------~~~~l~~L~  136 (227)
                      .      .+.++++|+.|++++|.++.                   +|.                      .+..+++|+
T Consensus       356 ~------~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~  429 (844)
T 3j0a_A          356 Q------TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ  429 (844)
T ss_dssp             S------CSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred             h------hhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccc
Confidence            1      11123344444444433332                   211                      123556666


Q ss_pred             EEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch------hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC
Q psy17253        137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK  210 (227)
Q Consensus       137 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~  210 (227)
                      .|++++|.++.......  ...+++|+.|++++|.++..+      ..+..+++|+.|++++|+++.+.+..|..+++|+
T Consensus       430 ~L~Ls~N~l~~~~~~~~--~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  507 (844)
T 3j0a_A          430 ILILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR  507 (844)
T ss_dssp             EEEEESCCCCCCCSSSS--SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred             eeeCCCCcccccccccc--cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence            66666666655433211  111233566666666554221      2344556666666666666666666666666666


Q ss_pred             EEEcCCCcCcccCCC
Q psy17253        211 MLDISHNLLTTLEET  225 (227)
Q Consensus       211 ~L~l~~n~l~~lp~~  225 (227)
                      .|++++|.++++|+.
T Consensus       508 ~L~Ls~N~l~~l~~~  522 (844)
T 3j0a_A          508 GLSLNSNRLTVLSHN  522 (844)
T ss_dssp             EEEEESCCCSSCCCC
T ss_pred             eeECCCCCCCccChh
Confidence            777777666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=7.7e-17  Score=117.11  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=110.3

Q ss_pred             cccEEEccCCCCC--CCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCc
Q psy17253         69 QIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR  146 (227)
Q Consensus        69 ~L~~L~l~~n~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~  146 (227)
                      +++.|++++|.+.  ..+..+                   ..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~-------------------~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLT-------------------AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF   84 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCC-------------------GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC
T ss_pred             cCCEEECCCCCCChhhHHHHH-------------------HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc
Confidence            6777777777765  211111                   1357899999999999988 77888999999999999998


Q ss_pred             ccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc---cccCCCCCCCEEEcCCCcCcc
Q psy17253        147 TISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP---DDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      ...+..+..+++   |+.|++++|.++.++  ..+..+++|+.|++++|.++.+.+   ..+..+++|+.|++++|.+.+
T Consensus        85 ~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           85 GGLDMLAEKLPN---LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             SCCCHHHHHCTT---CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             hHHHHHHhhCCC---CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            855544433444   999999999999876  677889999999999999998865   588999999999999999999


Q ss_pred             cCCCCC
Q psy17253        222 LEETSK  227 (227)
Q Consensus       222 lp~~~~  227 (227)
                      +|.+.+
T Consensus       162 ~~~~~~  167 (168)
T 2ell_A          162 APDSDA  167 (168)
T ss_dssp             CCSSSC
T ss_pred             cccccc
Confidence            998753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=2.2e-15  Score=126.25  Aligned_cols=157  Identities=26%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTNIFE  114 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~~  114 (227)
                      ++++|++++|.+..++   +..++ +|+.|++++|.+.+ +-..+        +.|.+..++         +..+++|+.
T Consensus        65 ~L~~L~Ls~n~l~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---------~~~l~~L~~  131 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD---LSQNT-NLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---------VSQNPLLTY  131 (457)
T ss_dssp             TCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---------CTTCTTCCE
T ss_pred             CCCEEEccCCcCCeEc---cccCC-CCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---------CCCCCcCCE
Confidence            5677777777766664   55555 67777777776665 31111        222222221         234566666


Q ss_pred             EEccCCCcccccccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----------------
Q psy17253        115 LKLQHNEIENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNEIENLDG----------------  177 (227)
Q Consensus       115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----------------  177 (227)
                      |++++|.++.++  +..+++|+.|++++|. +..+   .+   ..+++|+.|++++|.++.+|-                
T Consensus       132 L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~---~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DV---TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             EECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CC---TTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             EECCCCccceec--cccCCcCCEEECCCCCccccc---cc---ccCCcCCEEECCCCccceeccccCCCCCEEECcCCcC
Confidence            666666666542  3333444444444432 1111   11   112234444444444444330                


Q ss_pred             ---hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        178 ---ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       178 ---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                         .+..+++|+.|++++|+++++ |  ++.+++|+.|++++|.++++|.
T Consensus       204 ~~~~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          204 TKLDLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             SCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CeeccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH
Confidence               133445555566666655554 2  4556666666666666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.4e-16  Score=136.10  Aligned_cols=148  Identities=26%  Similarity=0.390  Sum_probs=127.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +|+.|++++|.+..++.  +..++ +|+.|++++|.+.. ++                     +..+++|+.|+|++|.+
T Consensus        44 ~L~~L~l~~n~i~~l~~--l~~l~-~L~~L~Ls~N~l~~~~~---------------------l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDIKP---------------------LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             TCCCCBCTTCCCCCCTT--GGGCT-TCCEEECTTSCCCCCGG---------------------GGGCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCCChH--HccCC-CCCEEEeeCCCCCCChh---------------------hccCCCCCEEECcCCCC
Confidence            69999999999999874  78887 99999999999875 22                     23468999999999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      +.++ .+..+++|+.|+|++|.+..++  .+..   +++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+  
T Consensus       100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~---l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A          100 KDLS-SLKDLKKLKSLSLEHNGISDIN--GLVH---LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             CCCT-TSTTCTTCCEEECTTSCCCCCG--GGGG---CTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCh-hhccCCCCCEEEecCCCCCCCc--cccC---CCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--
Confidence            9877 5889999999999999998753  3444   45599999999999988 557889999999999999998855  


Q ss_pred             cCCCCCCCEEEcCCCcCcccCC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +..+++|+.|++++|.++++|.
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDLRA  192 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG
T ss_pred             hccCCCCCEEECcCCCCCCChH
Confidence            8999999999999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=1.2e-15  Score=111.85  Aligned_cols=134  Identities=21%  Similarity=0.420  Sum_probs=101.2

Q ss_pred             ccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCC
Q psy17253          8 CTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAA   86 (227)
Q Consensus         8 ~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~   86 (227)
                      ..|.|...     .+.|...    ++ ..+|..+..+++.|++++|.+..++...|..++ +|+.|++++|.+.. +...
T Consensus         3 ~~C~C~~~-----~l~~~~~----~l-~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A            3 SRCSCSGT-----EIRCNSK----GL-TSVPTGIPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             TTCEEETT-----EEECCSS----CC-SSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTT
T ss_pred             CCCEeCCC-----EEEecCC----CC-ccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhH
Confidence            34555433     6888662    22 233444556899999999999999988888887 99999999999887 5544


Q ss_pred             CCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEE
Q psy17253         87 LRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL  165 (227)
Q Consensus        87 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l  165 (227)
                      |.                   ++++|+.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++   |+.|
T Consensus        72 ~~-------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~---L~~L  129 (177)
T 2o6r_A           72 FD-------------------KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS---LQKI  129 (177)
T ss_dssp             TT-------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT---CCEE
T ss_pred             cc-------------------CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc---cCEE
Confidence            43                   35789999999999988754 4678889999999999988877665555555   8889


Q ss_pred             EcCCCCCcC
Q psy17253        166 KLQHNEIEN  174 (227)
Q Consensus       166 ~l~~n~~~~  174 (227)
                      ++++|.+..
T Consensus       130 ~l~~N~~~~  138 (177)
T 2o6r_A          130 WLHTNPWDC  138 (177)
T ss_dssp             ECCSSCBCC
T ss_pred             EecCCCeec
Confidence            999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-16  Score=124.31  Aligned_cols=158  Identities=25%  Similarity=0.371  Sum_probs=130.7

Q ss_pred             chhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCC
Q psy17253         32 QVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVT  110 (227)
Q Consensus        32 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~  110 (227)
                      .+.+.+|..-..++..++++++.+.+++  .+..++ +|+.|++++|.+.. +  .                   +..++
T Consensus         8 ~i~~~~pd~~l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l~--~-------------------l~~l~   63 (263)
T 1xeu_A            8 PINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSLA--G-------------------MQFFT   63 (263)
T ss_dssp             EHHHHCCSHHHHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCCT--T-------------------GGGCT
T ss_pred             CHHHhCCCHHHHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccch--H-------------------HhhCC
Confidence            3444555543336888899999999888  477887 99999999999875 2  1                   12368


Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeC
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL  190 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l  190 (227)
                      +|+.|++++|.++.++. +..+++|+.|++++|.++.++..  ..    ++|+.|++++|.++.++. +..+++|+.|++
T Consensus        64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~----~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L  135 (263)
T 1xeu_A           64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS----ACLSRLFLDNNELRDTDS-LIHLKNLEILSI  135 (263)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC----SSCCEEECCSSCCSBSGG-GTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc----CcccEEEccCCccCCChh-hcCcccccEEEC
Confidence            99999999999999977 89999999999999999887542  22    459999999999998864 788999999999


Q ss_pred             CCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      ++|+++.+ + .+..+++|+.|++++|.+++++
T Consensus       136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~  166 (263)
T 1xeu_A          136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTG  166 (263)
T ss_dssp             TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCT
T ss_pred             CCCcCCCC-h-HHccCCCCCEEECCCCcCcchH
Confidence            99999998 3 6888999999999999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=8.5e-16  Score=114.14  Aligned_cols=135  Identities=27%  Similarity=0.519  Sum_probs=105.5

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChh-hhhcccccccEEEccCCCCCC-C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSK-TFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      +|-.|.|...     .+.|...    ++ ..+|..++.+++.|++++|.+..++.. .|..++ +|+.|++++|.++. .
T Consensus         2 CP~~C~C~~~-----~l~~s~~----~l-~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~   70 (192)
T 1w8a_A            2 CPAMCHCEGT-----TVDCTGR----GL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIE   70 (192)
T ss_dssp             CCTTSEEETT-----EEECTTS----CC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBC
T ss_pred             cCCCCEECCC-----EEEcCCC----Cc-CcCccCCCCCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcC
Confidence            3444666542     6778662    33 344555555899999999999988864 588887 99999999999987 5


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      +..|.                   ++++|+.|++++|.++.++ ..|..+++|+.|++++|.+++..+..+..+++   |
T Consensus        71 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L  128 (192)
T 1w8a_A           71 PNAFE-------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS---L  128 (192)
T ss_dssp             TTTTT-------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT---C
T ss_pred             HhHcC-------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC---C
Confidence            55553                   3578999999999999874 45888999999999999999888777766665   9


Q ss_pred             cEEEcCCCCCc
Q psy17253        163 FELKLQHNEIE  173 (227)
Q Consensus       163 ~~l~l~~n~~~  173 (227)
                      +.|++++|.+.
T Consensus       129 ~~L~L~~N~l~  139 (192)
T 1w8a_A          129 TSLNLASNPFN  139 (192)
T ss_dssp             CEEECTTCCBC
T ss_pred             CEEEeCCCCcc
Confidence            99999999886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=8.4e-16  Score=131.62  Aligned_cols=150  Identities=22%  Similarity=0.241  Sum_probs=116.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTNIFE  114 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~~  114 (227)
                      +++.|++++|.+..+|...+   + +|+.|++++|.++. + ..+        +.|.+..+|. +.         .+|+.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~-~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~---------~~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---P-QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LP---------ASLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---T-TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CC---------TTCCE
T ss_pred             CccEEEeCCCCCCccCHhHc---C-CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hh---------cCCCE
Confidence            68999999999999987643   4 89999999999998 6 333        4555555554 21         27889


Q ss_pred             EEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCc
Q psy17253        115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  194 (227)
                      |++++|.++.+|.   .+++|+.|++++|.++.++.    .+   ++|+.|++++|.++.+|. +.  ++|+.|++++|+
T Consensus       125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l---~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          125 LDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LP---TSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CC---TTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred             EECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cC---CCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence            9999998888877   57889999999998887653    23   448999999999988887 54  889999999999


Q ss_pred             cccCCccccCCCCCC-------CEEEcCCCcCcccCCC
Q psy17253        195 LRTISPDDFIGLDSL-------KMLDISHNLLTTLEET  225 (227)
Q Consensus       195 l~~~~~~~~~~~~~L-------~~L~l~~n~l~~lp~~  225 (227)
                      ++.++.  +..  +|       +.|++++|.++.+|..
T Consensus       192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~  225 (571)
T 3cvr_A          192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN  225 (571)
T ss_dssp             CSSCCC--CC----------CCEEEECCSSCCCCCCGG
T ss_pred             CCchhh--HHH--hhhcccccceEEecCCCcceecCHH
Confidence            987744  444  66       8999999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=2.2e-15  Score=110.35  Aligned_cols=110  Identities=23%  Similarity=0.347  Sum_probs=95.8

Q ss_pred             CcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCE
Q psy17253        110 TNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSR  187 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~  187 (227)
                      ++++.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+.+   |+.|++++|.++.++. .+..+++|+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK---LTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc---cCEEECCCCCccccCHHHhhCCcccCE
Confidence            579999999999998854 5688999999999999999887766666655   9999999999998874 4678899999


Q ss_pred             EeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253        188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL  222 (227)
Q Consensus       188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l  222 (227)
                      |++++|+++.+.+..+..+++|+.|++++|++...
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999999998777889999999999999998654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.65  E-value=1.1e-14  Score=121.96  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=111.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhh----------
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKN----------  104 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~----------  104 (227)
                      ++++|++++|.+..++   +..++ +|+.|++++|.+.. +-..+        +.+.+..++  +..++.          
T Consensus        86 ~L~~L~Ls~N~l~~~~---~~~l~-~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           86 NLTYLACDSNKLTNLD---VTPLT-KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             TCSEEECCSSCCSCCC---CTTCT-TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS
T ss_pred             CCCEEECcCCCCceee---cCCCC-cCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC
Confidence            5777777777777664   55565 67777777777665 32111        333333332  111100          


Q ss_pred             -----hhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh
Q psy17253        105 -----QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL  179 (227)
Q Consensus       105 -----~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  179 (227)
                           .+..+++|+.|++++|.++.+|  +..+++|+.|++++|.++.++   +..+   ++|+.|++++|+++.+|  +
T Consensus       160 ~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~---l~~l---~~L~~L~Ls~N~l~~ip--~  229 (457)
T 3bz5_A          160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD---LNQN---IQLTFLDCSSNKLTEID--V  229 (457)
T ss_dssp             CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC---CTTC---TTCSEEECCSSCCSCCC--C
T ss_pred             cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec---cccC---CCCCEEECcCCcccccC--c
Confidence                 1335678888888888888876  678888999999999888762   3334   45999999999999987  7


Q ss_pred             cCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      ..+++|+.|++++|+++.+++   +.++.|+.|++++|.++.+.
T Consensus       230 ~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCC
T ss_pred             cccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEE
Confidence            788999999999999998854   45566666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=6e-15  Score=123.85  Aligned_cols=167  Identities=26%  Similarity=0.418  Sum_probs=92.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhch-----------
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNL-----------  102 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~-----------  102 (227)
                      +++.|++++|.+..++.  +..++ +|+.|++++|.+.. ++ ..+        ..+.+..++. +..+           
T Consensus       178 ~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          178 TLERLDISSNKVSDISV--LAKLT-NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN  253 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCT-TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS
T ss_pred             CCCEEECcCCcCCCChh--hccCC-CCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCC
Confidence            67777777777776643  56665 77777777777665 22 111        2233322211 1110           


Q ss_pred             -----hhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh
Q psy17253        103 -----KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG  177 (227)
Q Consensus       103 -----~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  177 (227)
                           .. +.++++|+.|++++|.++.++. +..+++|+.|++++|.+...++  +.   .+++|+.|++++|.++.++.
T Consensus       254 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~---~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          254 QISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--IS---NLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GG---GCTTCSEEECCSSCCSCCGG
T ss_pred             ccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hc---CCCCCCEEECcCCcCCCchh
Confidence                 00 2234455555555555554433 4455555555555555544432  22   23336666666666665543


Q ss_pred             hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                       +..+++|+.|++++|+++.+  ..+..+++|+.|++++|.++++++
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence             45566677777777766665  356677777777777777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=3.8e-15  Score=128.93  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=25.9

Q ss_pred             CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253         43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      .+|++|++++|.++.+|.    .++ +|+.|++++|.+..
T Consensus        81 ~~L~~L~Ls~N~l~~lp~----~l~-~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV----LPP-GLLELSIFSNPLTH  115 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC----CCT-TCCEEEECSCCCCC
T ss_pred             CCCCEEEcCCCcCCcCCC----CCC-CCCEEECcCCcCCC
Confidence            468888888888887776    344 77777777777766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=8.5e-15  Score=122.59  Aligned_cols=55  Identities=24%  Similarity=0.364  Sum_probs=25.7

Q ss_pred             ccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        162 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       162 L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      |+.|++++|+++.+|..   ..+|+.|++++|++..++ ..   .++|+.|++++|.++++|
T Consensus       239 L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~-~~---~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          239 LTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLP-EL---PQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             CCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCC-CC---CTTCCEEECCSSCCSEES
T ss_pred             CCEEECCCCcCCccccc---ccccCEEECCCCcccccC-cc---cCcCCEEECcCCccCccc
Confidence            55555555555444431   244555555555554431 11   244555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=1.5e-14  Score=121.12  Aligned_cols=155  Identities=19%  Similarity=0.276  Sum_probs=75.3

Q ss_pred             CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC--C-----CCCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253         43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA--A-----LRPIDVCAPPSTLDNLKNQVQGVTNIFE  114 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~--~-----~~~~~l~~~~~~~~~~~~~~~~l~~L~~  114 (227)
                      .+++.|++++|.+..+|..    .. +|+.|++++|.+.+ +..  .     ++.+.+..+| .       +.++++|+.
T Consensus        91 ~~L~~L~l~~n~l~~lp~~----~~-~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~-------~~~l~~L~~  157 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL----PQ-SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-E-------LQNSSFLKI  157 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC----CT-TCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-C-------CTTCTTCCE
T ss_pred             CCCCEEEccCCcCCccccc----cC-CCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-c-------cCCCCCCCE
Confidence            4677777777777766632    23 66677777776665 321  1     1334444333 1       223455666


Q ss_pred             EEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCc
Q psy17253        115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  194 (227)
                      |++++|.++.+|..+   .+|+.|++++|.+++++  .+..+++   |+.|++++|.++.+|...   .+|+.|++++|.
T Consensus       158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~---L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~  226 (454)
T 1jl5_A          158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPF---LTAIYADNNSLKKLPDLP---LSLESIVAGNNI  226 (454)
T ss_dssp             EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTT---CCEEECCSSCCSSCCCCC---TTCCEEECCSSC
T ss_pred             EECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCC---CCEEECCCCcCCcCCCCc---CcccEEECcCCc
Confidence            666666555554422   25555555555555432  2222222   555555555544433211   244444444444


Q ss_pred             cccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        195 LRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       195 l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +..+ + .++.+++|+.|++++|.++++|
T Consensus       227 l~~l-p-~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          227 LEEL-P-ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CSSC-C-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CCcc-c-ccCCCCCCCEEECCCCcCCccc
Confidence            4433 2 2444444444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=2.4e-15  Score=109.19  Aligned_cols=139  Identities=23%  Similarity=0.248  Sum_probs=112.7

Q ss_pred             cccCCCCCCccEEEeCCCCCC--CCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         36 ALQDRFGNDSISLKIAVSNLN--DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        36 ~~~~~~~~~l~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      ..+...+.+++.|++++|.+.  .+|.. +..++ +|+.|++++|.+... ..                   +..+++|+
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~-~L~~L~l~~n~l~~~-~~-------------------~~~l~~L~   74 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TAEFV-NLEFLSLINVGLISV-SN-------------------LPKLPKLK   74 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSC-CGGGG-GCCEEEEESSCCCCC-SS-------------------CCCCSSCC
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHH-HHhCC-CCCEEeCcCCCCCCh-hh-------------------hccCCCCC
Confidence            334455568999999999998  77754 77887 999999999998742 11                   22468999


Q ss_pred             EEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCE
Q psy17253        114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSR  187 (227)
Q Consensus       114 ~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~  187 (227)
                      .|++++|.++. +|..+..+++|+.|++++|.++.++. ..+..++   +|+.|++++|.++.++.    .+..+++|+.
T Consensus        75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~---~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE---CLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             EEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS---CCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             EEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC---CCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            99999999998 67777779999999999999988642 3444444   49999999999998875    6788999999


Q ss_pred             EeCCCCccccCC
Q psy17253        188 LDLSHNKLRTIS  199 (227)
Q Consensus       188 l~l~~n~l~~~~  199 (227)
                      |++++|.+..++
T Consensus       152 L~l~~n~~~~~~  163 (168)
T 2ell_A          152 LDGYDREDQEAP  163 (168)
T ss_dssp             ETTEETTSCBCC
T ss_pred             ecCCCCChhhcc
Confidence            999999988773

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=1.2e-14  Score=108.19  Aligned_cols=143  Identities=18%  Similarity=0.301  Sum_probs=115.4

Q ss_pred             CCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccc
Q psy17253         51 AVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL  129 (227)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~  129 (227)
                      ..+....+..   ..++ +++.|++++|.+.. + .                    +..+++|+.|++++|.++.++ .+
T Consensus        31 ~~~~~~~i~~---~~l~-~L~~L~l~~n~i~~l~-~--------------------l~~l~~L~~L~l~~n~~~~~~-~l   84 (197)
T 4ezg_A           31 GQSSTANITE---AQMN-SLTYITLANINVTDLT-G--------------------IEYAHNIKDLTINNIHATNYN-PI   84 (197)
T ss_dssp             TCCTTCCCBH---HHHH-TCCEEEEESSCCSCCT-T--------------------GGGCTTCSEEEEESCCCSCCG-GG
T ss_pred             CCCccccCCh---hhcC-CccEEeccCCCccChH-H--------------------HhcCCCCCEEEccCCCCCcch-hh
Confidence            3333445543   4555 89999999999875 3 1                    123588999999999887765 58


Q ss_pred             cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhhcCCCCCCEEeCCCCc-cccCCccccCCCC
Q psy17253        130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLD  207 (227)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~  207 (227)
                      ..+++|++|++++|.++...+..+..+++   |+.|++++|.++. .+..+..+++|+.|++++|. +..+ + .+..++
T Consensus        85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~  159 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVTSDKIPNLSGLTS---LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP  159 (197)
T ss_dssp             TTCTTCCEEEEECTTCBGGGSCCCTTCTT---CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred             hcCCCCCEEEeECCccCcccChhhcCCCC---CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence            88999999999999998866666666555   9999999999985 46778899999999999998 8877 3 688999


Q ss_pred             CCCEEEcCCCcCcccCC
Q psy17253        208 SLKMLDISHNLLTTLEE  224 (227)
Q Consensus       208 ~L~~L~l~~n~l~~lp~  224 (227)
                      +|+.|++++|.+++++.
T Consensus       160 ~L~~L~l~~n~i~~~~~  176 (197)
T 4ezg_A          160 ELKSLNIQFDGVHDYRG  176 (197)
T ss_dssp             SCCEEECTTBCCCCCTT
T ss_pred             CCCEEECCCCCCcChHH
Confidence            99999999999998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=1.3e-17  Score=142.97  Aligned_cols=174  Identities=21%  Similarity=0.239  Sum_probs=131.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCCCCCCCCCCcchhhchhhh----------------
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAALRPIDVCAPPSTLDNLKNQ----------------  105 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~~~~~~~~~~~~----------------  105 (227)
                      +++.|++++|.+..+|.. +..++ +|+.|++++|....  +......+.....|..+..+.++                
T Consensus       350 ~L~~L~Ls~n~L~~Lp~~-i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          350 QLFRCELSVEKSTVLQSE-LESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TSSSCCCCHHHHHHHHHH-HHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cceeccCChhhHHhhHHH-HHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence            788999999999988764 67777 89999986654100  00000000011122222211111                


Q ss_pred             -------hc--CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch
Q psy17253        106 -------VQ--GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD  176 (227)
Q Consensus       106 -------~~--~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  176 (227)
                             +.  ....|+.|++++|.++.+|. +..+++|+.|++++|.++.++ ..+..+++   |+.|++++|.++.+|
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~---L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRC---LEVLQASDNALENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC-GGGGGCTT---CCEEECCSSCCCCCG
T ss_pred             hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc-hhhhcCCC---CCEEECCCCCCCCCc
Confidence                   00  12368899999999999987 999999999999999999664 45655555   999999999999998


Q ss_pred             hhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                       .+..+++|+.|++++|+++.+. |..++.+++|+.|++++|.++++|+.
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence             7889999999999999999987 88999999999999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=2e-15  Score=110.54  Aligned_cols=135  Identities=18%  Similarity=0.207  Sum_probs=105.9

Q ss_pred             hhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCC
Q psy17253         63 FQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  142 (227)
Q Consensus        63 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~  142 (227)
                      +.... +++.|++++|.+..-+.             +..      ..++|+.|++++|.++.+ ..+..+++|+.|++++
T Consensus        15 ~~~~~-~L~~L~l~~n~l~~i~~-------------~~~------~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~   73 (176)
T 1a9n_A           15 YTNAV-RDRELDLRGYKIPVIEN-------------LGA------TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN   73 (176)
T ss_dssp             EECTT-SCEEEECTTSCCCSCCC-------------GGG------GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS
T ss_pred             cCCcC-CceEEEeeCCCCchhHH-------------hhh------cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC
Confidence            34444 78899999988764110             111      124899999999999988 6688899999999999


Q ss_pred             CcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh--hhcCCCCCCEEeCCCCccccCCcc---ccCCCCCCCEEEcCCC
Q psy17253        143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPD---DFIGLDSLKMLDISHN  217 (227)
Q Consensus       143 n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n  217 (227)
                      |.++.+++..+..+++   |+.|++++|.+..+|.  .+..+++|+.|++++|.+..+...   .+..+++|+.||+++|
T Consensus        74 N~l~~~~~~~~~~l~~---L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           74 NRICRIGEGLDQALPD---LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             SCCCEECSCHHHHCTT---CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CcccccCcchhhcCCC---CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            9999887654455555   9999999999998886  778889999999999999887433   4888999999999988


Q ss_pred             cCcc
Q psy17253        218 LLTT  221 (227)
Q Consensus       218 ~l~~  221 (227)
                      ....
T Consensus       151 ~~~~  154 (176)
T 1a9n_A          151 KLKE  154 (176)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=1.9e-14  Score=105.18  Aligned_cols=108  Identities=20%  Similarity=0.280  Sum_probs=92.5

Q ss_pred             ccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeC
Q psy17253        112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDL  190 (227)
Q Consensus       112 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l  190 (227)
                      -+.+++++|.++.+|..+.  .+|+.|++++|.++.+++..+..+++   |+.|++++|+++.+|. .+..+++|+.|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN---LQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC---CCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            4678999999999888664  78999999999999988877766666   9999999999998885 4578899999999


Q ss_pred             CCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++|+++.+.+..|..+++|+.|++++|++...+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9999999877779999999999999999876654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=4e-15  Score=105.84  Aligned_cols=103  Identities=21%  Similarity=0.228  Sum_probs=69.0

Q ss_pred             CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCC
Q psy17253        109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~  186 (227)
                      +++|+.|++++|.++.+ ..+..+++|+.|++++|.++...+..+..+++   |+.|++++|.++.++  ..+..+++|+
T Consensus        41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN---LTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---CCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC---CCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            46677777777777766 55667777777777777776643333333333   777777777777654  5566777777


Q ss_pred             EEeCCCCccccCCc---cccCCCCCCCEEEcC
Q psy17253        187 RLDLSHNKLRTISP---DDFIGLDSLKMLDIS  215 (227)
Q Consensus       187 ~l~l~~n~l~~~~~---~~~~~~~~L~~L~l~  215 (227)
                      .|++++|+++.+.+   ..+..+++|+.|+++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777777644   456677777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=1.3e-15  Score=123.95  Aligned_cols=179  Identities=23%  Similarity=0.313  Sum_probs=104.8

Q ss_pred             CccEEEeCCCCCCCCCh----hhhhcccccccEEEccCCCCCC-CCCCC----------------CCCCCCCCcchhhch
Q psy17253         44 DSISLKIAVSNLNDLPS----KTFQELGLQIVNLKLTKNNLRP-DGAAL----------------RPIDVCAPPSTLDNL  102 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------------~~~~l~~~~~~~~~~  102 (227)
                      ++++|++++|.++.++.    .+|..++.+|+.|++++|.+.. ....+                +.|.+...  ....+
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--~~~~l  100 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK--SSDEL  100 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--CHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH--HHHHH
Confidence            47777777777776665    5555553257777777777654 22111                11111111  11122


Q ss_pred             hhhhcCC-CcccEEEccCCCcccccc-----cccCC-CCCCEEEcCCCcCcccCCCCCCC-CCCC-CcccEEEcCCCCCc
Q psy17253        103 KNQVQGV-TNIFELKLQHNEIENLDG-----ALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSV-TNIFELKLQHNEIE  173 (227)
Q Consensus       103 ~~~~~~l-~~L~~L~l~~n~l~~l~~-----~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~~~-~~L~~l~l~~n~~~  173 (227)
                      ...+... ++|+.|++++|.++..+.     .+..+ .+|+.|++++|.++......+.. +..+ ++|+.|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            2233344 678888888888876532     23343 57888888888877433222110 1111 24888888888887


Q ss_pred             Cch-h----hhcCC-CCCCEEeCCCCccccCC----ccccCC-CCCCCEEEcCCCcCcccCC
Q psy17253        174 NLD-G----ALMGI-HGLSRLDLSHNKLRTIS----PDDFIG-LDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       174 ~~~-~----~~~~~-~~L~~l~l~~n~l~~~~----~~~~~~-~~~L~~L~l~~n~l~~lp~  224 (227)
                      ... .    .+... ++|+.|++++|.+....    +..+.. .++|+.|++++|.++..+.
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            443 2    33444 48888888888887743    233444 3578889999888877653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=1.9e-14  Score=104.72  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=93.2

Q ss_pred             cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEe
Q psy17253        111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLD  189 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~  189 (227)
                      ..+.+++++|.++.+|..+.  .+|+.|++++|.++.+++..+..+.+   |+.|++++|+++.++. .+..+++|+.|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~---L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ---LTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---CSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCccc---CCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            46789999999999987663  78999999999999988877776666   9999999999998874 457889999999


Q ss_pred             CCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +++|+++.+.+..|..+++|+.|++++|+++-.+
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999999998888999999999999999886544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.2e-14  Score=103.34  Aligned_cols=111  Identities=25%  Similarity=0.350  Sum_probs=97.3

Q ss_pred             CCcccEEEccCCCcc--cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhhcCCCCC
Q psy17253        109 VTNIFELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGL  185 (227)
Q Consensus       109 l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L  185 (227)
                      .++++.|++++|.++  .+|..+..+++|+.|++++|.++..  ..+..+   ++|+.|++++|.++. +|..+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL---NKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC---TTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC---CCCCEEECCCCcccchHHHHhhhCCCC
Confidence            478999999999999  6888889999999999999999877  344444   459999999999997 77777779999


Q ss_pred             CEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        186 SRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       186 ~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +.|++++|+++.+. +..+..+++|+.|++++|.++++|+
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999999999863 3788999999999999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=2.3e-15  Score=132.76  Aligned_cols=158  Identities=20%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|++.++.+..++..       .++.++++++.+.. ..   ..+.+...+       ..+..+..|+.|+|++|.+
T Consensus       174 ~~~~l~L~~n~~~~~~~~-------~l~~l~Ls~~~i~~~~~---~~n~~~~~~-------~~~~~l~~L~~L~Ls~n~l  236 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQA-------LLQHKKLSQYSIDEDDD---IENRMVMPK-------DSKYDDQLWHALDLSNLQI  236 (727)
T ss_dssp             -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred             ccceEEeeCCCCCcchhh-------HhhcCccCcccccCccc---cccceecCh-------hhhccCCCCcEEECCCCCC
Confidence            467777777777665443       23444455555443 10   111111111       2223456788888888888


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      ..+|..+..+++|+.|+|++|.++.++ ..+..+.+   |+.|+|++|.++.+|..+..+.+|+.|++++|.++.+ |..
T Consensus       237 ~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~---L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l-p~~  311 (727)
T 4b8c_D          237 FNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSN---LRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL-PWE  311 (727)
T ss_dssp             SCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTT---CCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC-CSS
T ss_pred             CCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCC---CCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc-Chh
Confidence            777776777788888888888877543 34444444   8888888888887777777778888888888888766 445


Q ss_pred             cCCCCCCCEEEcCCCcCcccC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      |+.+++|+.|++++|.+++.+
T Consensus       312 ~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCSHH
T ss_pred             hhcCCCccEEeCCCCccCCCC
Confidence            777888888888888877544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=3.7e-16  Score=137.77  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=85.4

Q ss_pred             CChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCC
Q psy17253         58 LPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS  136 (227)
Q Consensus        58 ~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~  136 (227)
                      ++...|..+. .|+.|++++|.+.. +...|                    .+++|+.|+|++|.|+.+|..|..+++|+
T Consensus       215 ~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~--------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  273 (727)
T 4b8c_D          215 MPKDSKYDDQ-LWHALDLSNLQIFNISANIF--------------------KYDFLTRLYLNGNSLTELPAEIKNLSNLR  273 (727)
T ss_dssp             -------CCC-CCCEEECTTSCCSCCCGGGG--------------------GCCSCSCCBCTTSCCSCCCGGGGGGTTCC
T ss_pred             cChhhhccCC-CCcEEECCCCCCCCCChhhc--------------------CCCCCCEEEeeCCcCcccChhhhCCCCCC
Confidence            4566777787 89999999988775 43333                    25778888888888888888888888888


Q ss_pred             EEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       137 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      +|+|++|.++.+ +..+..+.+   |+.|+|++|.++.+|..+..+++|+.|++++|.++...+.
T Consensus       274 ~L~Ls~N~l~~l-p~~~~~l~~---L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          274 VLDLSHNRLTSL-PAELGSCFQ---LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EEECTTSCCSSC-CSSGGGGTT---CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EEeCcCCcCCcc-ChhhcCCCC---CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            888888888855 444544444   8888888888888887688888888888888888764443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=3.7e-14  Score=114.77  Aligned_cols=153  Identities=19%  Similarity=0.304  Sum_probs=87.7

Q ss_pred             cEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc
Q psy17253         46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN  124 (227)
Q Consensus        46 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  124 (227)
                      +.++.++++++++|.+..   . +++.|++++|+++. +..+|..                   +++|+.|+|++|.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---~-~l~~L~Ls~N~i~~i~~~~f~~-------------------l~~L~~L~Ls~N~i~~   68 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---R-NAIELRFVLTKLRVIQKGAFSG-------------------FGDLEKIEISQNDVLE   68 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---T-TCSEEEEESCCCSEECTTSSTT-------------------CTTCCEEEEECCTTCC
T ss_pred             CEEEecCCCCCccCcCcC---C-CCCEEEccCCcCCCcCHHHHcC-------------------CCCCCEEECcCCCCCC
Confidence            578899999999997542   3 79999999999998 8777753                   3455555555555432


Q ss_pred             -cc-ccccCCCCCCE-EEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-------------------------Cch
Q psy17253        125 -LD-GALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-------------------------NLD  176 (227)
Q Consensus       125 -l~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-------------------------~~~  176 (227)
                       ++ ..|..+++++. +.+..|.++.++++.+..+++   |+.|++++|.++                         .++
T Consensus        69 ~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~---L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN---LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT---CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred             ccChhHhhcchhhhhhhcccCCcccccCchhhhhccc---cccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence             32 23444444433 223344455544444443333   444555444444                         343


Q ss_pred             -hhhcCC-CCCCEEeCCCCccccCCccccCCCCCCCEEEcC-CCcCcccCCC
Q psy17253        177 -GALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS-HNLLTTLEET  225 (227)
Q Consensus       177 -~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~lp~~  225 (227)
                       ..+..+ ..++.|++++|+++.+.+.+|. ..+++.+++. +|.++.+|++
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTT
T ss_pred             ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHH
Confidence             222222 2355666667766666554443 3456666665 3566666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=3.4e-14  Score=114.02  Aligned_cols=44  Identities=9%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP   89 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~   89 (227)
                      +|+.|++.. .+..++..+|.++. +|+.|++.+|.+.. +..+|..
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~  146 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALAD  146 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCT
T ss_pred             CCcEEECCc-cccchhHHHhhcCc-ccceEEcCCCCccccchhhhcC
Confidence            577777777 67777777777776 77777777777777 6666643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=1.8e-15  Score=124.00  Aligned_cols=173  Identities=18%  Similarity=0.212  Sum_probs=119.9

Q ss_pred             CccEEEeCCCCCCCC----ChhhhhcccccccEEEccCCCCCC-CC-------------------CCC-----CCCCCCC
Q psy17253         44 DSISLKIAVSNLNDL----PSKTFQELGLQIVNLKLTKNNLRP-DG-------------------AAL-----RPIDVCA   94 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~-~~-------------------~~~-----~~~~l~~   94 (227)
                      +|++|++++|.+...    ....+..++ +|+.|++++|.+.. ..                   ..+     +.|.+. 
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-  172 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-  172 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-
Confidence            799999999999873    334567777 99999999999863 11                   112     222221 


Q ss_pred             CcchhhchhhhhcCCCcccEEEccCCCccc-----c-cccccCCCCCCEEEcCCCcCc----ccCCCCCCCCCCCCcccE
Q psy17253         95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN-----L-DGALMGIHGLSRLDLSHNKLR----TISPDDFIGLDSVTNIFE  164 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l-~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~~~L~~  164 (227)
                       ...+..+...+..+++|+.|++++|.++.     + +..+..+++|+.|++++|.++    ...+..+..+   ++|+.
T Consensus       173 -~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~---~~L~~  248 (386)
T 2ca6_A          173 -NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW---PNLRE  248 (386)
T ss_dssp             -GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC---TTCCE
T ss_pred             -cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC---CCcCE
Confidence             01233333445567889999999998872     2 436778889999999999885    2222233333   44899


Q ss_pred             EEcCCCCCcCc-----hhhh--cCCCCCCEEeCCCCcccc-----CCcccc-CCCCCCCEEEcCCCcCcccC
Q psy17253        165 LKLQHNEIENL-----DGAL--MGIHGLSRLDLSHNKLRT-----ISPDDF-IGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       165 l~l~~n~~~~~-----~~~~--~~~~~L~~l~l~~n~l~~-----~~~~~~-~~~~~L~~L~l~~n~l~~lp  223 (227)
                      |++++|.++..     +..+  ..+++|+.|++++|.++.     + +..+ ..+++|+.|++++|.++...
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcCCcch
Confidence            99999988743     4445  337889999999999887     4 4444 56788999999999887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=6.4e-15  Score=119.81  Aligned_cols=174  Identities=20%  Similarity=0.209  Sum_probs=101.7

Q ss_pred             CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCC-CCC-----------CC-----CCCCCCCCcchhhc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRP-DGA-----------AL-----RPIDVCAPPSTLDN  101 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~-~~~-----------~~-----~~~~l~~~~~~~~~  101 (227)
                      ++++|++++|.++......+..+     + +|+.|++++|.+.. ...           .+     +.|.+...+  ...
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~  128 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS--SSE  128 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--HHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH--HHH
Confidence            57778888887777766666654     5 77778888777765 321           11     222222211  112


Q ss_pred             hhhhhcCC-CcccEEEccCCCccc-----ccccccCCC-CCCEEEcCCCcCcccCCCCCCC-CCCC-CcccEEEcCCCCC
Q psy17253        102 LKNQVQGV-TNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFIG-LDSV-TNIFELKLQHNEI  172 (227)
Q Consensus       102 ~~~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~-~~~~-~~L~~l~l~~n~~  172 (227)
                      +...+..+ ++|+.|++++|.++.     ++..+..++ +|+.|++++|.++...+..+.. +..+ ++|+.|++++|.+
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            22223332 478888888887773     344455554 7888888888776654332221 1122 2477788888877


Q ss_pred             cC-----chhhhcC-CCCCCEEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCc
Q psy17253        173 EN-----LDGALMG-IHGLSRLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       173 ~~-----~~~~~~~-~~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~  220 (227)
                      ..     ++..+.. .++|+.|++++|.++....    ..+..+++|+.|++++|.+.
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            75     4444444 3477788888777766543    23455566666666666533

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=8.7e-14  Score=101.71  Aligned_cols=111  Identities=25%  Similarity=0.325  Sum_probs=93.7

Q ss_pred             CCCcccEEEccCCCcccccccccCC-CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhh-hcCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGL  185 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L  185 (227)
                      ...+++.|++++|.++.++. +..+ ++|+.|++++|.++.+  ..+..++   +|+.|++++|.++.+|.. +..+++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR---RLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS---SCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCC---CCCEEECCCCcccccCcchhhcCCCC
Confidence            35789999999999998865 4444 4999999999999887  3454444   499999999999988844 4889999


Q ss_pred             CEEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccCC
Q psy17253        186 SRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +.|++++|++..++. ..+..+++|+.|++++|+++.+|.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            999999999988743 378899999999999999998875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=2.2e-13  Score=99.51  Aligned_cols=90  Identities=18%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEE
Q psy17253         37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL  115 (227)
Q Consensus        37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L  115 (227)
                      +|..++.+++.|++++|.|..+++..|..++ +|+.|++++|+++. +...|.                   ++++|+.|
T Consensus        27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~-------------------~l~~L~~L   86 (174)
T 2r9u_A           27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFD-------------------KLTQLTQL   86 (174)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-------------------TCTTCCEE
T ss_pred             cCCCcCCCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhC-------------------CcchhhEE
Confidence            3333444566666666666666555555555 56666666655554 333332                   13445555


Q ss_pred             EccCCCcccccc-cccCCCCCCEEEcCCCcCc
Q psy17253        116 KLQHNEIENLDG-ALMGIHGLSRLDLSHNKLR  146 (227)
Q Consensus       116 ~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~  146 (227)
                      ++++|.++.+|. .|..+++|+.|++++|.+.
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555555555433 2444555555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=1.3e-14  Score=116.59  Aligned_cols=170  Identities=15%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             CccEEEeCCCCCCCC-ChhhhhcccccccEEEccCCCCCC-CCCCCC-CCCCCCCcc----hhh--chhhhhcCCCcccE
Q psy17253         44 DSISLKIAVSNLNDL-PSKTFQELGLQIVNLKLTKNNLRP-DGAALR-PIDVCAPPS----TLD--NLKNQVQGVTNIFE  114 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-~~~l~~~~~----~~~--~~~~~~~~l~~L~~  114 (227)
                      ++++|++++|.+... ....+..++ +|+.|++++|.+.. ....+. ...+..+.-    .+.  .++..+.++++|+.
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            788888888877643 334566676 88888888887764 211111 111111110    011  23444556677777


Q ss_pred             EEccCC-Cccc--ccccccCCC-CCCEEEcCCCc--Ccc-cCCCCCCCCCCCCcccEEEcCCCC-Cc-CchhhhcCCCCC
Q psy17253        115 LKLQHN-EIEN--LDGALMGIH-GLSRLDLSHNK--LRT-ISPDDFIGLDSVTNIFELKLQHNE-IE-NLDGALMGIHGL  185 (227)
Q Consensus       115 L~l~~n-~l~~--l~~~~~~l~-~L~~L~l~~n~--l~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~-~~~~~~~~~~~L  185 (227)
                      |++++| .++.  ++..+..++ +|+.|++++|.  ++. ..+..+..   +++|+.|++++|. ++ ..+..+..+++|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH---CTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh---CCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            777777 7764  455566677 77777777773  331 11112222   3347778888777 54 334556677778


Q ss_pred             CEEeCCCCc-cccCCccccCCCCCCCEEEcCCC
Q psy17253        186 SRLDLSHNK-LRTISPDDFIGLDSLKMLDISHN  217 (227)
Q Consensus       186 ~~l~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n  217 (227)
                      +.|++++|. +.......++.+++|+.|++++|
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            888888774 32222235667777888888777

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=1.2e-14  Score=119.03  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=117.9

Q ss_pred             CccEEEeCCCCCCCCC----hhh------hhcccccccEEEccCCCCCC-CCC----CC-----------CCCCCCCCcc
Q psy17253         44 DSISLKIAVSNLNDLP----SKT------FQELGLQIVNLKLTKNNLRP-DGA----AL-----------RPIDVCAPPS   97 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~----~~~------~~~~~~~L~~L~l~~n~~~~-~~~----~~-----------~~~~l~~~~~   97 (227)
                      +++.|++++|.+..+.    ...      +..++ +|+.|++++|.+.. ...    .+           +.+.+..  .
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~  137 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--Q  137 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--H
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH--H
Confidence            7999999998777553    221      35666 99999999999875 111    11           2222110  0


Q ss_pred             hhhchhhhhcCC---------CcccEEEccCCCccc--cc---ccccCCCCCCEEEcCCCcCcc-----cCCCCCCCCCC
Q psy17253         98 TLDNLKNQVQGV---------TNIFELKLQHNEIEN--LD---GALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDS  158 (227)
Q Consensus        98 ~~~~~~~~~~~l---------~~L~~L~l~~n~l~~--l~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~  158 (227)
                      ....+...+..+         ++|+.|++++|.++.  ++   ..+..+++|+.|++++|.++.     +.+..+.   .
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~---~  214 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---Y  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---G
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---c
Confidence            111222223233         789999999998863  34   456678899999999998872     2222333   3


Q ss_pred             CCcccEEEcCCCCC-----cCchhhhcCCCCCCEEeCCCCccccCC----cccc--CCCCCCCEEEcCCCcCcc
Q psy17253        159 VTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTIS----PDDF--IGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       159 ~~~L~~l~l~~n~~-----~~~~~~~~~~~~L~~l~l~~n~l~~~~----~~~~--~~~~~L~~L~l~~n~l~~  221 (227)
                      +++|+.|++++|.+     ..++..+..+++|+.|++++|.++...    +..+  +.+++|+.|++++|.++.
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            44599999999998     456677788899999999999987652    3444  348899999999999887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=3.1e-13  Score=98.31  Aligned_cols=87  Identities=20%  Similarity=0.316  Sum_probs=43.6

Q ss_pred             CCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEc
Q psy17253         39 DRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKL  117 (227)
Q Consensus        39 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l  117 (227)
                      ..+...++.|++++|.|..++...|..++ +|+.|++++|++.. ++..|.                   ++++|+.|++
T Consensus        26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~-------------------~l~~L~~L~L   85 (170)
T 3g39_A           26 TGIPTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFD-------------------KLTQLTQLSL   85 (170)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTT-------------------TCTTCCEEEC
T ss_pred             ccCCCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhcc-------------------CCCCCCEEEC
Confidence            33334556666666666665555555555 55555555555554 333332                   1344555555


Q ss_pred             cCCCcccccc-cccCCCCCCEEEcCCCcC
Q psy17253        118 QHNEIENLDG-ALMGIHGLSRLDLSHNKL  145 (227)
Q Consensus       118 ~~n~l~~l~~-~~~~l~~L~~L~l~~n~l  145 (227)
                      ++|.++.++. .|..+++|+.|++++|.+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            5555554432 344444555555555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=2.4e-13  Score=109.13  Aligned_cols=176  Identities=15%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             chhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC----CCC-CCCCCC-CCCCC---------C
Q psy17253         32 QVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN----LRP-DGAALR-PIDVC---------A   94 (227)
Q Consensus        32 ~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~----~~~-~~~~~~-~~~l~---------~   94 (227)
                      .+..+...+|..  +|+.|++.+|.+..++..+|.+.. ++..+....+.    ... ....|. +..+.         .
T Consensus       111 ~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~  189 (329)
T 3sb4_A          111 KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK  189 (329)
T ss_dssp             TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred             cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCC-ceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence            455555666766  899999999999999999998765 67666655422    112 222231 11111         0


Q ss_pred             Ccchhh---------------------chhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253         95 PPSTLD---------------------NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDD  152 (227)
Q Consensus        95 ~~~~~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~  152 (227)
                      ++..+.                     ....+...+++|+.+++++|.++.++ ..|..+.+|+.+++.+| +..+....
T Consensus       190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a  268 (329)
T 3sb4_A          190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV  268 (329)
T ss_dssp             HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence            000000                     00011112567777777777777773 45667777777777776 66676666


Q ss_pred             CCCCCCCCccc-EEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEE
Q psy17253        153 FIGLDSVTNIF-ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD  213 (227)
Q Consensus       153 ~~~~~~~~~L~-~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~  213 (227)
                      |.++.+   |+ .+++.. .++.++ ..+.++.+|+.+++.+|++..+...+|.++++|+.++
T Consensus       269 F~~~~~---L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          269 FSNCGR---LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTT---CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhCChh---ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            666665   76 777766 566665 5566777777777777777777777777777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=5.6e-14  Score=112.77  Aligned_cols=174  Identities=21%  Similarity=0.199  Sum_probs=118.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCC-CCCC--CCC------CCCCCCCCCC-cchhhchhhhhcCCC-cc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKN-NLRP--DGA------ALRPIDVCAP-PSTLDNLKNQVQGVT-NI  112 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n-~~~~--~~~------~~~~~~l~~~-~~~~~~~~~~~~~l~-~L  112 (227)
                      ++++|++++|.+.......+..++ +|+.|++++| .++.  .+.      .+....+... .-.-..++..+..++ +|
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            799999999988866666777787 9999999998 5653  111      1111122221 111112455566788 99


Q ss_pred             cEEEccCCC--cc--cccccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCC-CcCch-hhhcCCCCC
Q psy17253        113 FELKLQHNE--IE--NLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNE-IENLD-GALMGIHGL  185 (227)
Q Consensus       113 ~~L~l~~n~--l~--~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L  185 (227)
                      +.|++++|.  ++  .++..+..+++|+.|++++|. ++......+..+   ++|+.|++++|. +.... ..+..+++|
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL---NYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC---TTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC---CCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence            999999994  43  467777889999999999998 665544455444   459999999995 32211 346788999


Q ss_pred             CEEeCCCCccccCCccccCCC-CCCCEEEcCCCcCcccCCC
Q psy17253        186 SRLDLSHNKLRTISPDDFIGL-DSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~lp~~  225 (227)
                      +.|++++| +..   ..+..+ ..+..|++++|.++++.+.
T Consensus       275 ~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          275 KTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            99999999 433   233333 2366677899999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=5.7e-13  Score=114.34  Aligned_cols=145  Identities=23%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             CccEEE-eCCCCCCCCChhh-----hhccc-ccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEE
Q psy17253         44 DSISLK-IAVSNLNDLPSKT-----FQELG-LQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL  115 (227)
Q Consensus        44 ~l~~L~-l~~~~l~~~~~~~-----~~~~~-~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L  115 (227)
                      +|+.|+ ++.+.+..++...     +..++ ..|+.|++++|.+++ |.                     +..+++|+.|
T Consensus       410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~---------------------~~~l~~L~~L  468 (567)
T 1dce_A          410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---------------------LEQLLLVTHL  468 (567)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC---------------------GGGGTTCCEE
T ss_pred             hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC---------------------ccccccCcEe
Confidence            577777 5655544333211     11111 158899999999875 21                     1235889999


Q ss_pred             EccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc--hhhhcCCCCCCEEeCCCC
Q psy17253        116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       116 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n  193 (227)
                      ++++|.++.+|..+..+++|+.|++++|.+++++  .+..+++   |+.|++++|.++.+  |..+..+++|+.|++++|
T Consensus       469 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~---L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          469 DLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPR---LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             ECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSS---CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCC---CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            9999999999999999999999999999999865  5555555   99999999999988  788899999999999999


Q ss_pred             ccccCCcc---ccCCCCCCCEEEc
Q psy17253        194 KLRTISPD---DFIGLDSLKMLDI  214 (227)
Q Consensus       194 ~l~~~~~~---~~~~~~~L~~L~l  214 (227)
                      +++.+++.   .+..+++|+.|++
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCccHHHHHHHHCcccCccCC
Confidence            99987542   2344788888864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=6.3e-16  Score=115.34  Aligned_cols=149  Identities=23%  Similarity=0.267  Sum_probs=114.4

Q ss_pred             CccEEEeCCC--CCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVS--NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~--~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      .++.+.+.+.  .+..++. .|..++ +|+.|++++|.+..            +| .+       .++++|+.|++++|.
T Consensus        24 ~l~~~~l~~~~~~l~~l~~-~~~~l~-~L~~L~ls~n~l~~------------l~-~~-------~~l~~L~~L~l~~n~   81 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDA-TLSTLK-ACKHLALSTNNIEK------------IS-SL-------SGMENLRILSLGRNL   81 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHH-HHHHTT-TCSEEECSEEEESC------------CC-CH-------HHHTTCCEEEEEEEE
T ss_pred             chheeEeccccCcHhhhhH-HHhcCC-CCCEEECCCCCCcc------------cc-cc-------ccCCCCCEEECCCCC
Confidence            4566666554  4555655 688887 99999999999774            12 22       235789999999999


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh--hhcCCCCCCEEeCCCCccccCC
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTIS  199 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~  199 (227)
                      ++.+|..+..+++|+.|++++|.++.++  .+.   .+++|+.|++++|.++.++.  .+..+++|+.|++++|.+....
T Consensus        82 l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~---~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           82 IKKIENLDAVADTLEELWISYNQIASLS--GIE---KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ECSCSSHHHHHHHCSEEEEEEEECCCHH--HHH---HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             cccccchhhcCCcCCEEECcCCcCCcCC--ccc---cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            9999887777789999999999998864  333   34459999999999998764  6788999999999999986653


Q ss_pred             cc----------ccCCCCCCCEEEcCCCcCcc
Q psy17253        200 PD----------DFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       200 ~~----------~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +.          .+..+++|+.||  +|.++.
T Consensus       157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            32          377889999887  666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=3.9e-12  Score=102.59  Aligned_cols=101  Identities=28%  Similarity=0.391  Sum_probs=48.5

Q ss_pred             EEccCC-CcccccccccCCCCCCEEEcCC-CcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCC
Q psy17253        115 LKLQHN-EIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS  191 (227)
Q Consensus       115 L~l~~n-~l~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~  191 (227)
                      ++++++ .++.+|. +..+.+|+.|+|++ |.++.+++..|..+.+   |+.|+|++|+++.++ ..+..+++|+.|+|+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGE---LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCC---CSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccC---CCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            344444 4555544 44445555555553 5555544444433333   555555555555443 234445555555555


Q ss_pred             CCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        192 HNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       192 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +|+++.+++..|..++ |+.|++.+|.++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            5555554444444433 555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.34  E-value=2.3e-13  Score=113.66  Aligned_cols=62  Identities=24%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             CcccEEEcCCCCCcCch-hhh----c-CCCCCCEEeCCCCcccc----CCccccCCCCCCCEEEcCCCcCcc
Q psy17253        160 TNIFELKLQHNEIENLD-GAL----M-GIHGLSRLDLSHNKLRT----ISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       160 ~~L~~l~l~~n~~~~~~-~~~----~-~~~~L~~l~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      ++|+.|++++|.++... ..+    . ..++|+.|++++|+++.    ..+..+..+++|+.|++++|.++.
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            34777777777665432 222    1 14577777777777763    224556667777777877777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.2e-15  Score=111.47  Aligned_cols=137  Identities=23%  Similarity=0.247  Sum_probs=105.4

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCccc
Q psy17253         69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI  148 (227)
Q Consensus        69 ~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  148 (227)
                      .++.++++.+.+..     ....+..+|.       .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+
T Consensus        19 ~l~~l~l~~~~l~~-----~~~~l~~l~~-------~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l   85 (198)
T 1ds9_A           19 SVVATEAEKVELHG-----MIPPIEKMDA-------TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI   85 (198)
T ss_dssp             CCCCTTCSEEECCB-----CCTTCCCCHH-------HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC
T ss_pred             cccCcchheeEecc-----ccCcHhhhhH-------HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc
Confidence            56666666666553     1112333333       3344689999999999999988 788899999999999999865


Q ss_pred             CCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccC
Q psy17253        149 SPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       149 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      +. .+..   +++|+.|++++|.++.+| .+..+++|+.|++++|+++.+.. ..+..+++|+.|++++|++...+
T Consensus        86 ~~-~~~~---~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           86 EN-LDAV---ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SS-HHHH---HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             cc-hhhc---CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            42 3322   345999999999999887 47788899999999999998743 57889999999999999986653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=1.8e-11  Score=100.71  Aligned_cols=180  Identities=15%  Similarity=0.211  Sum_probs=111.8

Q ss_pred             cCCCCC-CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCC--Ccchhhchhh-hhcCCCcc
Q psy17253         38 QDRFGN-DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCA--PPSTLDNLKN-QVQGVTNI  112 (227)
Q Consensus        38 ~~~~~~-~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~--~~~~~~~~~~-~~~~l~~L  112 (227)
                      ...|.. .|+.+.+.. .+..++..+|.++. +|+.+++.+|.+.. +...|.+..+..  +|..+..+.. .+.++.+|
T Consensus       151 ~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L  228 (401)
T 4fdw_A          151 DMAFFNSTVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQL  228 (401)
T ss_dssp             TTTTTTCCCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTC
T ss_pred             HHhcCCCCceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCC
Confidence            334444 566666664 46667767777776 77777777777766 666665443332  2333332221 22334445


Q ss_pred             cEEEccC---------------------CCcccc-cccccCCCCCCEEEcCCCcCc-----ccCCCCCCCCCCCCcccEE
Q psy17253        113 FELKLQH---------------------NEIENL-DGALMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSVTNIFEL  165 (227)
Q Consensus       113 ~~L~l~~---------------------n~l~~l-~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~~L~~l  165 (227)
                      +.+.+..                     +.++.+ ..+|..+.+|+.+.+.+|.+.     .+....|.++.+   |+.+
T Consensus       229 ~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~---L~~l  305 (401)
T 4fdw_A          229 KTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK---LARF  305 (401)
T ss_dssp             CCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT---CCEE
T ss_pred             CEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc---CCeE
Confidence            5555443                     223444 445667777777777766554     456666666655   7777


Q ss_pred             EcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       166 ~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      .+. +.++.++ ..+.++.+|+.+.+.. .++.+...+|..+ +|+.+++.+|.+..++..
T Consensus       306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          306 EIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             CCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             EeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence            777 4466676 5567778888888844 4777777888888 888888888877666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.34  E-value=6.9e-13  Score=110.79  Aligned_cols=160  Identities=20%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             CccEEEeCCCCCCCCC----hhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCC----cccEE
Q psy17253         44 DSISLKIAVSNLNDLP----SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVT----NIFEL  115 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~----~L~~L  115 (227)
                      +++.|++++|.+....    ...+..++ +|+.|++++|.+..                 .....+...+.    +|+.|
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~-----------------~~~~~l~~~l~~~~~~L~~L   90 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGD-----------------VGVHCVLQGLQTPSCKIQKL   90 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHH-----------------HHHHHHHHTTCSTTCCCCEE
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCCh-----------------HHHHHHHHHHhhCCCceeEE
Confidence            5777777777776432    23344455 77777777777542                 01111222233    69999


Q ss_pred             EccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC--CCCCCcccEEEcCCCCCcC-----chhhhcCCC
Q psy17253        116 KLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIFELKLQHNEIEN-----LDGALMGIH  183 (227)
Q Consensus       116 ~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~  183 (227)
                      ++++|.++.     ++..+..+++|+.|++++|.++......+..  ....++|+.|++++|.++.     ++..+..++
T Consensus        91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  170 (461)
T 1z7x_W           91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP  170 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred             EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence            999998883     4777888899999999999886543222211  1123348999999998874     344556778


Q ss_pred             CCCEEeCCCCccccCCccccC-----CCCCCCEEEcCCCcCcc
Q psy17253        184 GLSRLDLSHNKLRTISPDDFI-----GLDSLKMLDISHNLLTT  221 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~  221 (227)
                      +|+.|++++|.+.......+.     ..+.|+.|++++|.++.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            999999999998765433332     35689999999998876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=4.5e-13  Score=109.29  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=104.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEcc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQ  118 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~  118 (227)
                      .++.|++++|.++......+...     . .|+.|++++|.+..                 .....+...+++|+.|+|+
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~-----------------~~~~~l~~~L~~L~~L~Ls  134 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDP-----------------AGLRTLLPVFLRARKLGLQ  134 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCH-----------------HHHHHTHHHHHTEEEEECC
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCH-----------------HHHHHHHHHHHhccHhhcC
Confidence            68999999999987665555554     4 79999999998753                 1111122234578888888


Q ss_pred             CCCcccc-----cccc-cCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCC
Q psy17253        119 HNEIENL-----DGAL-MGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENL-----DGALMGIHGLS  186 (227)
Q Consensus       119 ~n~l~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~  186 (227)
                      +|.++..     ...+ ...++|+.|++++|.++......+. .+...++|+.|++++|.+...     ...+...++|+
T Consensus       135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~  214 (372)
T 3un9_A          135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ  214 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred             CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence            8888653     2222 2456788888888887653222221 112334488888888887642     34455667788


Q ss_pred             EEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCcc
Q psy17253        187 RLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       187 ~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      .|++++|.++....    .++...+.|+.|++++|.++.
T Consensus       215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            88888888875432    334456778888888887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=3.2e-11  Score=97.20  Aligned_cols=101  Identities=25%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             EEEecCCCCccchhhcccCCCCC--CccEEEeCC-CCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCc
Q psy17253         21 VVECEKMTSFGQVVDALQDRFGN--DSISLKIAV-SNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPP   96 (227)
Q Consensus        21 ~~~c~~~~~~~~~~~~~~~~~~~--~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~   96 (227)
                      .+.|....   ++. .+|. ++.  +|+.|+|++ |.|..++...|..+. +|+.|++++|++.+ ++..|.        
T Consensus        12 ~v~~~~~n---~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~--------   77 (347)
T 2ifg_A           12 GLRCTRDG---ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFH--------   77 (347)
T ss_dssp             CEECCSSC---CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGG--------
T ss_pred             EEEcCCCC---CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhc--------
Confidence            57886521   233 3455 555  699999996 999999998999998 99999999999887 665553        


Q ss_pred             chhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCc
Q psy17253         97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR  146 (227)
Q Consensus        97 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~  146 (227)
                                 ++++|+.|+|++|.|+.+|..+.....|+.|++.+|.+.
T Consensus        78 -----------~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           78 -----------FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             -----------SCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -----------CCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence                       358899999999999988664444334999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=2.6e-11  Score=98.88  Aligned_cols=162  Identities=20%  Similarity=0.223  Sum_probs=107.8

Q ss_pred             CCccEEEeCCCCCCCCChhhh-hcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhh-cCCCcccEEEccCC
Q psy17253         43 NDSISLKIAVSNLNDLPSKTF-QELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV-QGVTNIFELKLQHN  120 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n  120 (227)
                      ..++.|++++|.++......+ ..+. +|+.|++++|.+..              .....+...+ ...++|+.|+|++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~--------------~~~~~L~~~L~~~~~~L~~L~Ls~n  165 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGP--------------EACKDLRDLLLHDQCQITTLRLSNN  165 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCH--------------HHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCH--------------HHHHHHHHHHHhcCCccceeeCCCC
Confidence            379999999999876443333 3455 89999999999863              1222222222 23578999999999


Q ss_pred             Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCCEEe
Q psy17253        121 EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENL-----DGALMGIHGLSRLD  189 (227)
Q Consensus       121 ~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~  189 (227)
                      .++.     ++..+..+++|++|+|++|.++......+. .+...+.|+.|++++|.++..     ...+...++|+.|+
T Consensus       166 ~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~  245 (372)
T 3un9_A          166 PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH  245 (372)
T ss_dssp             CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence            9975     455667889999999999998764321111 123334599999999999843     33455678899999


Q ss_pred             CCCCccccCCccccCCC---C--CCCEEE--cCCCcC
Q psy17253        190 LSHNKLRTISPDDFIGL---D--SLKMLD--ISHNLL  219 (227)
Q Consensus       190 l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~n~l  219 (227)
                      +++|.|+......+..+   .  .++.+.  +.++.+
T Consensus       246 Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             CTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             ccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            99999986544333322   1  155555  555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.05  E-value=3.1e-09  Score=87.45  Aligned_cols=172  Identities=20%  Similarity=0.293  Sum_probs=89.0

Q ss_pred             ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCC--Ccchhhchh-hhhcCCCcccEEEccCC
Q psy17253         45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCA--PPSTLDNLK-NQVQGVTNIFELKLQHN  120 (227)
Q Consensus        45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~--~~~~~~~~~-~~~~~l~~L~~L~l~~n  120 (227)
                      ++.+.+..+ +..++..+|.+ . +|+.+.+..+ +.. ...+|.+..+..  +|..+..+. ..+.++.+|+.++++.|
T Consensus       115 l~~i~ip~~-i~~I~~~aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n  190 (401)
T 4fdw_A          115 YNEIILPNS-VKSIPKDAFRN-S-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT  190 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTT-C-CCSEEECCTT-CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred             ccEEEECCc-cCEehHhhccc-C-CccEEEeCCC-ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence            444444432 45555555554 2 4555555443 444 444554433322  122333222 12334566777777766


Q ss_pred             CcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCC---------------------CCCcCch-hh
Q psy17253        121 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH---------------------NEIENLD-GA  178 (227)
Q Consensus       121 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~---------------------n~~~~~~-~~  178 (227)
                      .++.++.......+|+.+.+.. .+..+....|..+.+   |+.+.+..                     +.++.++ ..
T Consensus       191 ~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~---L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~a  266 (401)
T 4fdw_A          191 KITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQ---LKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRA  266 (401)
T ss_dssp             CCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTT---CCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTT
T ss_pred             cceEechhhEeecccCEEEeCC-chheehhhHhhCCCC---CCEEecCCCccCccccccccCCccEEEeCCCccEEChhH
Confidence            6666543322345566665553 255555555544443   44444433                     3344454 44


Q ss_pred             hcCCCCCCEEeCCCCccc-----cCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        179 LMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       179 ~~~~~~L~~l~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +.++.+|+.+.+.++.+.     .+...+|.++++|+.+++. +.++.|+..
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~  317 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG  317 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence            566667777777666554     4556677777777777777 346666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.02  E-value=5.6e-10  Score=96.00  Aligned_cols=169  Identities=15%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             CccEEEeCCCC-CCCCC-hhhhhcccccccEEEccCCCCCC-CCC----------CC-----CCCCCCCCcchhhchhhh
Q psy17253         44 DSISLKIAVSN-LNDLP-SKTFQELGLQIVNLKLTKNNLRP-DGA----------AL-----RPIDVCAPPSTLDNLKNQ  105 (227)
Q Consensus        44 ~l~~L~l~~~~-l~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~~----------~~-----~~~~l~~~~~~~~~~~~~  105 (227)
                      ++++|++++|. +.... ......++ +|+.|++++|.+.. ...          .+     ..+.+..+  ....++..
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~~~~l~~~  215 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--SPKDLETI  215 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--CHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--CHHHHHHH
Confidence            47788887775 21110 11122455 77788888777543 111          00     11111111  12344455


Q ss_pred             hcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC
Q psy17253        106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL  185 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L  185 (227)
                      +..+++|+.|++++|.+..++..+..+++|+.|++...............+..+++|+.++++++....++..+..+++|
T Consensus       216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            55678888888888888777777777788888887643221111112222333344666666655444555545555666


Q ss_pred             CEEeCCCCccccCCc-cccCCCCCCCEEEcC
Q psy17253        186 SRLDLSHNKLRTISP-DDFIGLDSLKMLDIS  215 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~  215 (227)
                      +.|++++|.++.... ..+..+++|+.|++.
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            666666666433211 223444555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.75  E-value=4.9e-09  Score=90.12  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             hhhhhcCCCcccEEEccCCCcccc-----cccccCCCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCCCcCc
Q psy17253        102 LKNQVQGVTNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNEIENL  175 (227)
Q Consensus       102 ~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~  175 (227)
                      +..+..++++|+.|++++|.+++.     +..+..+++|+.|+++.|.+.......+.. ...+++|+.|++++|.+..+
T Consensus       156 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l  235 (592)
T 3ogk_B          156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL  235 (592)
T ss_dssp             HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred             HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence            334444567788888888776542     223345677888888777765322111110 11234477788887777666


Q ss_pred             hhhhcCCCCCCEEeCCCC---------------------------ccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        176 DGALMGIHGLSRLDLSHN---------------------------KLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       176 ~~~~~~~~~L~~l~l~~n---------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +..+..+++|+.++++..                           ....+ +..+..+++|+.|++++|.++
T Consensus       236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCC
T ss_pred             HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCC
Confidence            655566666666666532                           11111 334556677888888887753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.69  E-value=9.8e-09  Score=88.21  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=41.9

Q ss_pred             CccEEEeCCCCCCCCChhhhh-cccccccEEEccCCC-CCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNN-LRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      ++++|++++|.++......+. .++ +|+.|++++|. +.                 -..++.+...+++|+.|++++|.
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~-----------------~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGFS-----------------TDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEEE-----------------HHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCCC-----------------HHHHHHHHHhCCCCCEEeCcCCc
Confidence            456666666555433333332 344 56666665552 11                 11133333446677777777766


Q ss_pred             cccc-----cccccCCCCCCEEEcCCCc
Q psy17253        122 IENL-----DGALMGIHGLSRLDLSHNK  144 (227)
Q Consensus       122 l~~l-----~~~~~~l~~L~~L~l~~n~  144 (227)
                      ++..     +.....+++|+.|+++++.
T Consensus       168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          168 VDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            5542     1222244567777776664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=4.7e-09  Score=77.11  Aligned_cols=120  Identities=15%  Similarity=0.083  Sum_probs=89.4

Q ss_pred             chhhhhcCCCcccEEEccCC-Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCc
Q psy17253        101 NLKNQVQGVTNIFELKLQHN-EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIE  173 (227)
Q Consensus       101 ~~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~  173 (227)
                      .+...+...++|+.|+|++| .+..     +...+...++|++|+|++|.+.......+. .+...+.|+.|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34555667889999999999 8874     455667788999999999998764322221 1223355999999999998


Q ss_pred             C-----chhhhcCCCCCCEEeC--CCCccccCC----ccccCCCCCCCEEEcCCCcCc
Q psy17253        174 N-----LDGALMGIHGLSRLDL--SHNKLRTIS----PDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       174 ~-----~~~~~~~~~~L~~l~l--~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      .     +...+...+.|+.|++  ++|.+....    ...+...+.|+.|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4     3455677788999999  889997642    245566789999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=2.3e-08  Score=73.44  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             cccEEEccCC-CCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCC
Q psy17253         69 QIVNLKLTKN-NLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSH  142 (227)
Q Consensus        69 ~L~~L~l~~n-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~  142 (227)
                      .|+.|++++| .+..              .....+...+...++|++|+|++|.+..     +...+...++|+.|+|++
T Consensus        37 ~L~~L~L~~n~~i~~--------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           37 DLEEVNLNNIMNIPV--------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             TCCEEECTTCTTCCH--------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             CCCEEEecCCCCCCH--------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence            5666666666 5541              2223333334445677777777777764     344455556788888888


Q ss_pred             CcCcccCCCCC-CCCCCCCcccEEEc--CCCCCcC-----chhhhcCCCCCCEEeCCCCcccc
Q psy17253        143 NKLRTISPDDF-IGLDSVTNIFELKL--QHNEIEN-----LDGALMGIHGLSRLDLSHNKLRT  197 (227)
Q Consensus       143 n~l~~~~~~~~-~~~~~~~~L~~l~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~  197 (227)
                      |.+.......+ ..+...+.|+.|++  ++|.+..     +...+...+.|+.|++++|.+..
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            87765321111 12233345888888  7787763     23445556778888888887753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.47  E-value=3.1e-08  Score=85.13  Aligned_cols=169  Identities=15%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             CccEEEeCCC-CCCCC-ChhhhhcccccccEEEccCCCCCC-CCCCCC-----CCCCCC-----Cc--chhhchhhhhcC
Q psy17253         44 DSISLKIAVS-NLNDL-PSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----PIDVCA-----PP--STLDNLKNQVQG  108 (227)
Q Consensus        44 ~l~~L~l~~~-~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----~~~l~~-----~~--~~~~~~~~~~~~  108 (227)
                      ++++|++++| .++.. ....+..++ +|+.|++++|.+.. ....+.     ...+..     ..  .....+..+...
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            7999999998 55542 122334566 89999999998665 222110     001111     10  111233344445


Q ss_pred             CCcccEEEccCC-CcccccccccCCCCCCEEEcCCCcC--------------------------cccCCCCCCC-CCCCC
Q psy17253        109 VTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKL--------------------------RTISPDDFIG-LDSVT  160 (227)
Q Consensus       109 l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~-~~~~~  160 (227)
                      +++|+.|++++| .++.++..+..+++|+.|++..+..                          .......+.. ...++
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~  289 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS  289 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence            677777777776 4444555556666677776543310                          0000000110 01234


Q ss_pred             cccEEEcCCCCCcCc--hhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEc
Q psy17253        161 NIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDI  214 (227)
Q Consensus       161 ~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l  214 (227)
                      +|+.|++++|.++..  ...+..+++|+.|++++| +.... +.....+++|+.|++
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            588888888876532  233456778888888876 33211 122234677888877

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=3.6e-07  Score=74.02  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             CccEEEeCCCCCCC---------CChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLND---------LPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~---------~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +|+.|.+.......         -....+..++ .|+.|.++++.-.. +.  +                    ..++|+
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l~l~~--~--------------------~~~~L~  196 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNLSIGK--K--------------------PRPNLK  196 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTCBCCS--C--------------------BCTTCS
T ss_pred             hhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCceecc--c--------------------cCCCCc
Confidence            68999887654321         1224456666 89999998873111 11  1                    124566


Q ss_pred             EEEccCCCcccc-cccc--cCCCCCCEEEcCC--CcCcccC-C----CCCCCCCCCCcccEEEcCCCCCcC-chhhh---
Q psy17253        114 ELKLQHNEIENL-DGAL--MGIHGLSRLDLSH--NKLRTIS-P----DDFIGLDSVTNIFELKLQHNEIEN-LDGAL---  179 (227)
Q Consensus       114 ~L~l~~n~l~~l-~~~~--~~l~~L~~L~l~~--n~l~~~~-~----~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~---  179 (227)
                      .|++..+.++.- ...+  ..+++|+.|+|..  +...+.. .    ..+. ...+++|+.|++.+|.+.. .+..+   
T Consensus       197 ~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a  275 (362)
T 2ra8_A          197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLES  275 (362)
T ss_dssp             EEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred             EEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence            666665554321 1112  2455666665532  1110000 0    0010 0123446666666665542 11111   


Q ss_pred             cCCCCCCEEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCc
Q psy17253        180 MGIHGLSRLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       180 ~~~~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~  220 (227)
                      ..+++|+.|+++.|.+.....    ..+..+++|+.|+++.|.++
T Consensus       276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            234556666666666554221    11223455666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.29  E-value=1.7e-05  Score=64.84  Aligned_cols=81  Identities=22%  Similarity=0.421  Sum_probs=47.3

Q ss_pred             cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCC
Q psy17253        130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS  208 (227)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~  208 (227)
                      ..+.+|+.+.+..+ ++.+....|.++.+   |+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.+...+|.++.+
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~---L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFESCTS---LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTTTCTT---CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             cccccccccccccc-cceechhhhcCCCC---CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            34455555555433 44555555555544   666666433 55554 45566667777777554 66666667777777


Q ss_pred             CCEEEcCC
Q psy17253        209 LKMLDISH  216 (227)
Q Consensus       209 L~~L~l~~  216 (227)
                      |+.+++..
T Consensus       368 L~~i~lp~  375 (394)
T 4fs7_A          368 LKKVELPK  375 (394)
T ss_dssp             CCEEEEEG
T ss_pred             CCEEEECC
Confidence            77776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.26  E-value=2e-06  Score=59.21  Aligned_cols=64  Identities=27%  Similarity=0.531  Sum_probs=52.7

Q ss_pred             CccccccCCCCCceEEEecCCCCccchhh--cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCC
Q psy17253          7 PCTCKCRTSPISPIVVECEKMTSFGQVVD--ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR   81 (227)
Q Consensus         7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~--~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~   81 (227)
                      |-.|.|...     .|.|..     +-+.  .+|..++.+++.|+|++|.|..++.+.|..++ +|+.|++.+|.+.
T Consensus         3 P~~C~C~~~-----~v~Cs~-----~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~~   68 (130)
T 3rfe_A            3 PAPCSCAGT-----LVDCGR-----RGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCEEETT-----EEECCS-----SCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCCB
T ss_pred             CCCCEEcCC-----EEEeCC-----CCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCee
Confidence            444777532     799977     3333  67777888999999999999999999999998 9999999999975

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=3.8e-05  Score=62.71  Aligned_cols=106  Identities=17%  Similarity=0.346  Sum_probs=79.1

Q ss_pred             hcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCC
Q psy17253        106 VQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIH  183 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~  183 (227)
                      +.+...|+.+.+..+.. .+ ...|..+.+|+.+.+. +.++.+....|.++.+   |+.+.+..+ ++.+. ..+.++.
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~---L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS---LKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT---CCEEECCTT-CCEECTTTTTTCT
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCC---cCEEEeCCc-ccEehHhHhhCCC
Confidence            33556777777765533 33 4567778888888885 4577777777777766   888888754 66775 5677888


Q ss_pred             CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253        184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  218 (227)
                      +|+.+.+.. .++.+...+|.++.+|+.+++.++.
T Consensus       335 ~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence            999999864 4888888899999999999988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.9e-06  Score=66.60  Aligned_cols=79  Identities=27%  Similarity=0.247  Sum_probs=37.7

Q ss_pred             CCCCCCEEEcCCCcCcccCC--CCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc------
Q psy17253        131 GIHGLSRLDLSHNKLRTISP--DDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP------  200 (227)
Q Consensus       131 ~l~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~------  200 (227)
                      .+++|+.|+|++|.++++..  ..+.   .+++|+.|+|++|.++.+.  ..+..+ +|+.|++++|.+..-.+      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~---~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQ---KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHH---HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHh---hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence            34555666666665554321  1111   2233556666666655442  112222 56666666666543111      


Q ss_pred             -cccCCCCCCCEEE
Q psy17253        201 -DDFIGLDSLKMLD  213 (227)
Q Consensus       201 -~~~~~~~~L~~L~  213 (227)
                       ..+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2345556666555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.12  E-value=3e-05  Score=62.94  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=53.9

Q ss_pred             CCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253        109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~  186 (227)
                      ...|+.+.+..+ ++.+ ...|..+.+|+.+.+.. .+..+....|.++.+   |+.+.+..+.++.++ ..+.++.+|+
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~---L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN---LTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT---CCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             CccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc---cccccccccccceehhhhhcCCCCCC
Confidence            345555555543 4444 33445555566665543 244444444444444   556666555555554 3445556666


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCC
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISH  216 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~  216 (227)
                      .+.+.. .++.+...+|.++.+|+.+.+..
T Consensus       314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          314 SVTLPT-ALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             EEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence            666643 25555555666666666555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=7.9e-06  Score=66.13  Aligned_cols=153  Identities=12%  Similarity=0.120  Sum_probs=93.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhh-cCCCcccEEEccC--C
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV-QGVTNIFELKLQH--N  120 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~--n  120 (227)
                      +|+.|+++++.-..++.  +. .+ +|+.|++..+.+..                 ..+..+. ..+++|+.|+|+.  +
T Consensus       173 ~L~~L~L~g~~~l~l~~--~~-~~-~L~~L~L~~~~l~~-----------------~~l~~l~~~~lp~L~~L~L~~~~~  231 (362)
T 2ra8_A          173 LLNNLKIKGTNNLSIGK--KP-RP-NLKSLEIISGGLPD-----------------SVVEDILGSDLPNLEKLVLYVGVE  231 (362)
T ss_dssp             TCCEEEEECCBTCBCCS--CB-CT-TCSEEEEECSBCCH-----------------HHHHHHHHSBCTTCCEEEEECBCG
T ss_pred             CCcEEEEeCCCCceecc--cc-CC-CCcEEEEecCCCCh-----------------HHHHHHHHccCCCCcEEEEecccc
Confidence            69999998873223333  32 44 89999998877642                 1111111 2468899998853  1


Q ss_pred             C------cccccccc--cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCCE
Q psy17253        121 E------IENLDGAL--MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-----DGALMGIHGLSR  187 (227)
Q Consensus       121 ~------l~~l~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~  187 (227)
                      .      +..+...+  ..+++|+.|++.+|.+.......+.....++.|+.|+++.|.+...     +..+..+++|+.
T Consensus       232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~  311 (362)
T 2ra8_A          232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF  311 (362)
T ss_dssp             GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred             ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence            1      22232223  2468999999998887643222222223456699999999988752     333356788999


Q ss_pred             EeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253        188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  218 (227)
                      |++++|.++......+...- ...++++.++
T Consensus       312 L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          312 INMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             EECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             EECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            99999988764333333311 2457777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.00  E-value=6.7e-05  Score=60.81  Aligned_cols=96  Identities=15%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGL  185 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L  185 (227)
                      +..+++.+.+..+ ++.+ ...|..+.+|+.+.+..+.++.+....|.++.+   |+.+.+..+ ++.+. ..+.++.+|
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~---L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK---LSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT---CCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC---CCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            3567888888654 5566 456788899999999988888888888877777   888888654 77776 567888899


Q ss_pred             CEEeCCCCccccCCccccCCCCCC
Q psy17253        186 SRLDLSHNKLRTISPDDFIGLDSL  209 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~~~~~~~~~L  209 (227)
                      +.+.+..+ ++.+...+|.++..+
T Consensus       336 ~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          336 STISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             CEEEECCc-cCEEchhHhhCCCCC
Confidence            98888654 777777788776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.00  E-value=6.8e-05  Score=61.23  Aligned_cols=159  Identities=18%  Similarity=0.278  Sum_probs=94.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCC-CCCCcchhhch-hhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPID-VCAPPSTLDNL-KNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~  121 (227)
                      .++.+.+... +..+...+|.... .++.+.+..+...-....|.... +..+......+ ...+.+..+|+.+.+..+ 
T Consensus       231 ~l~~i~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          231 GVKNIIIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             CCCEEEECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred             CCceEEECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence            4555555432 4555556666665 67777666553322444442211 11111100011 122335677888888765 


Q ss_pred             cccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC
Q psy17253        122 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS  199 (227)
Q Consensus       122 l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~  199 (227)
                      ++.+ ..+|..+.+|+.+++.. .++.+...+|.++.+   |+.+.+..+ ++.++ ..+.++.+|+.+++..+ +..+ 
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~---L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-  380 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTS---LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-  380 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTT---CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-
T ss_pred             cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCC---CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-
Confidence            6666 45677888888888864 477777777777766   888888766 66776 56778888888888643 4444 


Q ss_pred             ccccCCCCCCCEE
Q psy17253        200 PDDFIGLDSLKML  212 (227)
Q Consensus       200 ~~~~~~~~~L~~L  212 (227)
                      ..+|..+.+|+.+
T Consensus       381 ~~~F~~c~~L~~I  393 (394)
T 4fs7_A          381 RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGBCTTCEEEEE
T ss_pred             hheecCCCCCcEE
Confidence            4567777766653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.96  E-value=5.8e-06  Score=63.93  Aligned_cols=81  Identities=23%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             cCCCcccEEEccCCCccccc---ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-ch------
Q psy17253        107 QGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LD------  176 (227)
Q Consensus       107 ~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~------  176 (227)
                      ..+++|+.|+|++|.|+.++   ..+..+++|+.|+|++|.+.++.  .+..+..+ .|+.|++++|.+.. +|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence            35788999999999888753   55667889999999999988762  33334433 58999999998863 22      


Q ss_pred             -hhhcCCCCCCEEeC
Q psy17253        177 -GALMGIHGLSRLDL  190 (227)
Q Consensus       177 -~~~~~~~~L~~l~l  190 (227)
                       ..+..+++|+.||-
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence             23467788888874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.80  E-value=8.6e-05  Score=60.61  Aligned_cols=103  Identities=14%  Similarity=0.318  Sum_probs=71.6

Q ss_pred             CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGL  185 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L  185 (227)
                      +...|+.+.+. +.++.+ ...|..+.+|+.+.+..+ ++.+....|.++.+   |+.+.+..+ ++.+. ..+.++.+|
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~---L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ---LERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT---CCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC---CCEEEECcc-cCEEhHhHhhCCCCC
Confidence            35788888886 446677 457888899999999864 77787788888777   888998654 77776 577889999


Q ss_pred             CEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253        186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  219 (227)
                      +.+++.++....   .++....+|+.+.+..|.+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999999875432   3566677888888766543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=6.6e-06  Score=59.44  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             cccEEEccCCCcccc-cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCC-CCcccEEEcCCCC-CcCch-hhhcCCCCC
Q psy17253        111 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDS-VTNIFELKLQHNE-IENLD-GALMGIHGL  185 (227)
Q Consensus       111 ~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~~L~~l~l~~n~-~~~~~-~~~~~~~~L  185 (227)
                      .|+.|+++++.++.. -..+..+++|+.|+|+++. ++......+..+.+ .++|++|+++++. ++.-. ..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            577777777776653 2335667777777777764 54432222222210 1247777777764 65432 334556777


Q ss_pred             CEEeCCCCc-ccc
Q psy17253        186 SRLDLSHNK-LRT  197 (227)
Q Consensus       186 ~~l~l~~n~-l~~  197 (227)
                      +.|+++++. +++
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            777777763 444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=3.2e-05  Score=56.83  Aligned_cols=118  Identities=11%  Similarity=0.175  Sum_probs=83.5

Q ss_pred             hhhhhcCCCcccEEEccCC-Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCCCcC
Q psy17253        102 LKNQVQGVTNIFELKLQHN-EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNEIEN  174 (227)
Q Consensus       102 ~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~  174 (227)
                      +...+..-+.|+.|+|+++ .|..     +...+..-..|+.|+|++|.+.......++. +...+.|+.|+|++|.|..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3444455678999999985 7763     4556667789999999999998665444432 3345669999999999973


Q ss_pred             -----chhhhcCCCCCCEEeCCCCccccCC-------ccccCCCCCCCEEEcCCCcC
Q psy17253        175 -----LDGALMGIHGLSRLDLSHNKLRTIS-------PDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       175 -----~~~~~~~~~~L~~l~l~~n~l~~~~-------~~~~~~~~~L~~L~l~~n~l  219 (227)
                           +.+.+..-..|+.|+++++....+.       ..++...+.|+.|+++.|.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                 2345566677999999875332221       24556678899999987753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.68  E-value=6.8e-05  Score=54.10  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=25.0

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN   79 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~   79 (227)
                      +|+.||+++|.++...-..+..++ +|+.|++++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCC
Confidence            688888888877765555566666 77777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=0.00011  Score=50.37  Aligned_cols=53  Identities=23%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             EEEcCCCcCc--ccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCcc
Q psy17253        137 RLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL  195 (227)
Q Consensus       137 ~L~l~~n~l~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l  195 (227)
                      .++-++++++  .++..    ++  .+++.|+|++|+|+.++ ..+..+.+|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~----lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA----FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC----CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC----CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666665  44422    11  13667777777777776 3456666777777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.45  E-value=0.00011  Score=54.08  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             hcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCC---CCcC--
Q psy17253        106 VQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHN---EIEN--  174 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n---~~~~--  174 (227)
                      +..-+.|+.|+|++|.|..     +...+..-..|+.|+|++|.|.......+. .+...+.|+.|+++++   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3334678888888888764     344455556788888888888654322221 2344455888888754   3331  


Q ss_pred             ---chhhhcCCCCCCEEeCCCCcc
Q psy17253        175 ---LDGALMGIHGLSRLDLSHNKL  195 (227)
Q Consensus       175 ---~~~~~~~~~~L~~l~l~~n~l  195 (227)
                         +...+..-+.|+.|+++.|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence               233455567788888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 8e-09
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189
             +  L+ L L  N +  ISP     + S+T +  L   +N++ ++  +L  +  ++ L 
Sbjct: 304 SNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLS 357

Query: 190 LSHNKLRTISPDDFIGLDSLKMLDISHN 217
             HN++  ++P     L  +  L ++  
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 87  LRPIDVCAPPSTLDNLKNQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDL 140
           + P+ +      L    NQ++ +      TN+ +L L +N+I NL   L G+  L+ L L
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKL 270

Query: 141 SHNKLRTISPDDFIGLDSVTNIF-----------------ELKLQHNEIENLDGALMGIH 183
             N++  ISP   +   +   +                   L L  N I ++   +  + 
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLT 329

Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
            L RL  ++NK+          L ++  L   HN ++ L   + 
Sbjct: 330 KLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202
             L   +  D +    +  +  L+     I+++DG +  ++ L++++ S+N+L  I+P  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-- 83

Query: 203 FIGLDSLKMLDISHN 217
              L  L  + +++N
Sbjct: 84  LKNLTKLVDILMNNN 98

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
           L L H ++  L   L  +  ++ LDLSHN+LR + P     L ++  +  L+   N +EN
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALEN 57

Query: 175 LDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE 224
           +DG          L L +N+L+  +     +    L +L++  N L   E 
Sbjct: 58  VDGVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
            ++ EL + +N++  L         L RL  S N L  +         +LK L + +N L
Sbjct: 284 PSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPL 336

Query: 220 TTLEE 224
               +
Sbjct: 337 REFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189
                L  L++S+NKL  +             +  L    N +  +         L +L 
Sbjct: 281 DLPPSLEELNVSNNKLIELP-------ALPPRLERLIASFNHLAEVPELP---QNLKQLH 330

Query: 190 LSHNKLRTISPDDFIGLDSLKM 211
           + +N LR   PD    ++ L+M
Sbjct: 331 VEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 8e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
               L+L++  L ++ P+       L+ L  S N LT L E
Sbjct: 39  QAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTELPE 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
                L  L++S+NKL  +          L+ L  S N L  + E  +
Sbjct: 281 DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQ 324

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193
               L+L++  L ++        +   ++  L    N +  L         L  L + +N
Sbjct: 39  QAHELELNNLGLSSLP-------ELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNN 88

Query: 194 KLRTI 198
            L+ +
Sbjct: 89  NLKAL 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 29/154 (18%)

Query: 97  STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
            +        QG+  +  +++    I  +   L     L+ L L  NK+  +      GL
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL 194

Query: 157 DS---------------------VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 195
           ++                       ++ EL L +N++  + G L     +  + L +N +
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 196 RTISPDDFIG------LDSLKMLDISHNLLTTLE 223
             I  +DF          S   + +  N +   E
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
            + LDL +NK+  I   DF  L    N+  L L +N+I  +  GA   +  L RL LS N
Sbjct: 33  TALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 194 KLRTISPDDFIGLDSLKMLDISHNLL 219
           +L+ +       L  L++ +     +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
           +  S   L  + P D        +   L LQ+N+I  + DG    +  L  L L +NK+ 
Sbjct: 15  VQCSDLGLEKV-PKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEE 224
            ISP  F  L  L+ L +S N L  L E
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPE 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 34/214 (15%)

Query: 7   PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
           P  C+C        VV+C         ++ +      D+  L +  + + ++    F+ L
Sbjct: 5   PFRCQC-----HLRVVQCS-----DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL 54

Query: 67  GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD 126
              +  L L  N +               P     L         +  L L  N+++ L 
Sbjct: 55  -KNLHTLILINNKIS-----------KISPGAFAPL-------VKLERLYLSKNQLKELP 95

Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
             +        L +  N++  +    F GL+ +  +             +GA  G+  LS
Sbjct: 96  EKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
            + ++   + TI         SL  L +  N +T
Sbjct: 154 YIRIADTNITTIPQGLP---PSLTELHLDGNKIT 184

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
            + LDL +NK+  I   DF  L +L  L + +N ++ +   +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 22/107 (20%)

Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
            ++ EL L +N++  + G L     +  + L +N +  I  +DF      T         
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS--- 275

Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDI 214
                             + L  N ++   I P  F  +     + +
Sbjct: 276 -----------------GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175
           +L+  ++E L   +   +  S+  L    LR+        L +      L  + +    L
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-----DLVAQNIDVVLNRRSSMAATL 57

Query: 176 DGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTTLEETSK 227
                 I  L  L+LS+N+L  +           +LK+L++S N L +  E  K
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 111

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 9e-05
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
               G  G   LD+S  ++ ++       L  L+     +  L  L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKL 238

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
           KL    IE              LDL   K+  I  +    LD    +D S N +  L+  
Sbjct: 2   KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 226 SK 227
             
Sbjct: 60  PL 61

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            + L LS N L T S    +    L  L++   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 32/211 (15%), Positives = 52/211 (24%), Gaps = 10/211 (4%)

Query: 8   CTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL- 66
           C      S +    V C+      + + AL      D+  L ++ + L      T     
Sbjct: 4   CEVSKVASHLE---VNCD-----KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT 55

Query: 67  GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD 126
            L  +NL   +         L  +               +        +           
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
                       +L        +    +   +          +N  E   G L G+  L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
            L L  N L TI P  F G   L    +  N
Sbjct: 176 TLLLQENSLYTI-PKGFFGSHLLPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.001
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLD 189
           +  LD+   +L      +   L  +     ++L    +     +++  AL     L+ L+
Sbjct: 4   IQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 190 LSHNKL-----RTISPDDFIGLDSLKMLDISHN 217
           L  N+L       +          ++ L + + 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 161 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI----GLDSLKMLDI 214
           +I  L +Q  E+        L  +     + L    L      D         +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 215 SHNLLT 220
             N L 
Sbjct: 63  RSNELG 68

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
           DL +N++    P     L  L  L++S N L 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
              L +++ +  LK   N+I ++   L  +  L  + L +N++  +SP       +L ++
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 213 DISH 216
            +++
Sbjct: 223 TLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 196
            LDL+   L      D  G      +   +   + ++           +  +DLS++ + 
Sbjct: 4   TLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 197 TISPDDFIG-LDSLKMLDISHNLLT 220
             +    +     L+ L +    L+
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLS 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=167.87  Aligned_cols=186  Identities=25%  Similarity=0.377  Sum_probs=135.8

Q ss_pred             cccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253          9 TCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL   87 (227)
Q Consensus         9 ~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~   87 (227)
                      .|.|. ...+.++|.|.+.    ++ ..+|..++.++++|++++|.|..++..+|..++ +|+.|++++|+++. +... 
T Consensus         3 ~C~~~-~~~~~~~v~C~~~----~L-~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~L~~N~l~~l~~~~-   74 (266)
T d1p9ag_           3 ICEVS-KVASHLEVNCDKR----NL-TALPPDLPKDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDG-   74 (266)
T ss_dssp             SSEEE-CSTTCCEEECTTS----CC-SSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCT-TCCEEECTTSCCCEEECCS-
T ss_pred             ccEEc-ccCCCeEEEccCC----CC-CeeCcCcCcCCCEEECcCCcCCCcCHHHhhccc-ccccccccccccccccccc-
Confidence            46665 4455578999772    33 345667777899999999999999999999998 99999999999886 4322 


Q ss_pred             CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEc
Q psy17253         88 RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL  167 (227)
Q Consensus        88 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l  167 (227)
                                          .+++|+.|++++|+++..+..+..+++|+.|++++|.+..+....+..+.+   ++.+++
T Consensus        75 --------------------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---l~~L~l  131 (266)
T d1p9ag_          75 --------------------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYL  131 (266)
T ss_dssp             --------------------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---CCEEEC
T ss_pred             --------------------ccccccccccccccccccccccccccccccccccccccceeeccccccccc---cccccc
Confidence                                246677777777777777666777777777777777776666555544444   777777


Q ss_pred             CCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        168 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       168 ~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      ++|.++.++ ..+..+..++.+++++|+++.+.+..|..+++|+.|++++|.++++|++
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChh
Confidence            777777665 3345566777777777777777666777777777777777777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-23  Score=161.06  Aligned_cols=202  Identities=25%  Similarity=0.398  Sum_probs=140.1

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG   84 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~   84 (227)
                      +|..|.|..  ...+.|.|..     .-+..+|..++..+++|+|++|.|+.++..+|.+++ .|+.|++++|++.. +.
T Consensus         2 cp~~C~C~~--~~~~~v~c~~-----~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~   73 (284)
T d1ozna_           2 CPGACVCYN--EPKVTTSCPQ-----QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDA   73 (284)
T ss_dssp             CCTTCEEEC--SSSCEEECCS-----SCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECT
T ss_pred             cCCCCEEcC--CCCeEEEcCC-----CCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccc-ccccccccccccccccc
Confidence            334577752  3346889976     334456667777899999999999999999999998 99999999999988 66


Q ss_pred             CCCCC------------CCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCC
Q psy17253         85 AALRP------------IDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD  151 (227)
Q Consensus        85 ~~~~~------------~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~  151 (227)
                      ..+..            +.+..++      +..+.++++|+.|++++|.+..+ +..+....+|+.+++.+|.++.+++.
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~l~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~  147 (284)
T d1ozna_          74 AAFTGLALLEQLDLSDNAQLRSVD------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (284)
T ss_dssp             TTTTTCTTCCEEECCSCTTCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccccccccccccccccccccc------chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChh
Confidence            66522            2222221      22244567777777777777665 33455566777777777777776666


Q ss_pred             CCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        152 DFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       152 ~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+..+..   |+.|++++|.++.++ ..+..+++|+.+++++|+++.+.+..|..+++++.|++++|.+.++++
T Consensus       148 ~f~~~~~---L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         148 TFRDLGN---LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TTTTCTT---CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             Hhccccc---hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence            5555544   777777777777665 455666777777777777777666777777777777777777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=5.6e-22  Score=155.90  Aligned_cols=202  Identities=19%  Similarity=0.389  Sum_probs=117.7

Q ss_pred             CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253          5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      .+|..|.|...     .+.|..     .-+..+|..++..+++|++++|.|+.++..+|..++ +|+.|++++|.+.. +
T Consensus         3 ~~p~~c~c~~~-----~~~C~~-----~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~   71 (305)
T d1xkua_           3 VCPFRCQCHLR-----VVQCSD-----LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKIS   71 (305)
T ss_dssp             CCCTTCEEETT-----EEECTT-----SCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBC
T ss_pred             CCCCCCEecCC-----EEEecC-----CCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccc-cccccccccccccccc
Confidence            35666888633     789987     223344556666788888888888888887888887 88888888888887 6


Q ss_pred             CCCC-----------CCCCCCCCcchhh--------------ch---------------------------hhhhcCCCc
Q psy17253         84 GAAL-----------RPIDVCAPPSTLD--------------NL---------------------------KNQVQGVTN  111 (227)
Q Consensus        84 ~~~~-----------~~~~l~~~~~~~~--------------~~---------------------------~~~~~~l~~  111 (227)
                      +..|           ..+.+..+|....              .+                           ...+.++++
T Consensus        72 ~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          72 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            6555           2233333332110              00                           001113455


Q ss_pred             ccEEEccCCCccccc----------------------ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCC
Q psy17253        112 IFELKLQHNEIENLD----------------------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH  169 (227)
Q Consensus       112 L~~L~l~~n~l~~l~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~  169 (227)
                      |+.+++++|.++.++                      ..+..++.++.|++++|.+..+++..+..+++   |+.|++++
T Consensus       152 L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~---L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH---LRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT---CCEEECCS
T ss_pred             cCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc---ceeeeccc
Confidence            566666665554443                      33444455555555555555555444443333   66666666


Q ss_pred             CCCcCchhhhcCCCCCCEEeCCCCccccCCcccc------CCCCCCCEEEcCCCcCc
Q psy17253        170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF------IGLDSLKMLDISHNLLT  220 (227)
Q Consensus       170 n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~  220 (227)
                      |.++.+|..+..+++|+.|++++|+|+.+....|      ..+.+|+.|++++|+++
T Consensus       229 N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6666666555556666666666666665543322      23455666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=3.7e-20  Score=136.04  Aligned_cols=178  Identities=22%  Similarity=0.402  Sum_probs=133.9

Q ss_pred             CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCC-CChhhhhcccccccEEEccCCCCCC-C
Q psy17253          6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLND-LPSKTFQELGLQIVNLKLTKNNLRP-D   83 (227)
Q Consensus         6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~~~~-~   83 (227)
                      +|-.|.|...     .|.|...    ++ ..+|..++.++++|++++|.|+. ++...|..++ +|+.|++++|.+.. +
T Consensus         2 CP~~C~C~~~-----~v~Cs~~----~L-~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~   70 (192)
T d1w8aa_           2 CPAMCHCEGT-----TVDCTGR----GL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIE   70 (192)
T ss_dssp             CCTTSEEETT-----EEECTTS----CC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBC
T ss_pred             cCCCCEEcCC-----EEEEeCC----Cc-CccCCCCCCCCCEEEeCCCCCcccccccccCCCc-eEeeeecccccccccc
Confidence            3444777633     7999762    33 34566677789999999999975 7788899998 99999999999998 6


Q ss_pred             CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253         84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI  162 (227)
Q Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L  162 (227)
                      ...|..                   +++|+.|++++|+|+.+ +..|..+++|+.|+|++|.|+.++++.|..+.+   |
T Consensus        71 ~~~~~~-------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~---L  128 (192)
T d1w8aa_          71 PNAFEG-------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS---L  128 (192)
T ss_dssp             TTTTTT-------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT---C
T ss_pred             cccccc-------------------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc---c
Confidence            666643                   57899999999999998 557899999999999999999999988877776   9


Q ss_pred             cEEEcCCCCCcCchh--hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253        163 FELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       163 ~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (227)
                      +++++++|.+.....  ++.  ..++.+.+..+.+.-..|.   .+..++.++++.|.++=
T Consensus       129 ~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         129 TSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCC
T ss_pred             ccccccccccccccchHHHh--hhhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhCcC
Confidence            999999999874432  221  1234445555555543343   34455566777777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1e-18  Score=137.07  Aligned_cols=180  Identities=20%  Similarity=0.294  Sum_probs=132.2

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------------
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------------   87 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------------   87 (227)
                      .+.+++....+..|..  ++++|++++|.+..+++.+|..++ .|+.|++++|+++. +...+                 
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~  116 (305)
T d1xkua_          38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR  116 (305)
T ss_dssp             CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC
T ss_pred             CcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC-ccCEecccCCccCcCccchhhhhhhhhccccchhhhh
Confidence            3556777776667765  899999999999999988999998 99999999999887 54433                 


Q ss_pred             -----------------------------------------CCCCCCCCcchh----h-----------chhhhhcCCCc
Q psy17253         88 -----------------------------------------RPIDVCAPPSTL----D-----------NLKNQVQGVTN  111 (227)
Q Consensus        88 -----------------------------------------~~~~l~~~~~~~----~-----------~~~~~~~~l~~  111 (227)
                                                               ..+.+..+|..+    .           ..+..+.+++.
T Consensus       117 ~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  196 (305)
T d1xkua_         117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN  196 (305)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             hhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccc
Confidence                                                     222233332211    0           01122335778


Q ss_pred             ccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hh------cCCC
Q psy17253        112 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-AL------MGIH  183 (227)
Q Consensus       112 L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~------~~~~  183 (227)
                      ++.|++++|.++.+ +.++..+++|++|++++|+++.++. .+..+++   |+.|++++|+++.++. .+      ....
T Consensus       197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~l~~l~~---L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKY---IQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTTCSS---CCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             ccccccccccccccccccccccccceeeeccccccccccc-ccccccC---CCEEECCCCccCccChhhccCcchhcccC
Confidence            88999999999887 6678889999999999999998753 5555555   9999999999998863 22      3457


Q ss_pred             CCCEEeCCCCccc--cCCccccCCCCCCCEE
Q psy17253        184 GLSRLDLSHNKLR--TISPDDFIGLDSLKML  212 (227)
Q Consensus       184 ~L~~l~l~~n~l~--~~~~~~~~~~~~L~~L  212 (227)
                      +|+.+++++|.++  .+.|.+|..+.....+
T Consensus       273 ~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         273 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             CCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             CCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            7999999999876  4567777765544433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.8e-19  Score=136.01  Aligned_cols=167  Identities=25%  Similarity=0.288  Sum_probs=138.3

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhh
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ  105 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~  105 (227)
                      .+.+.+....+..|..  +|++|++++|.|+.++.  +..++ +|+.|++++|++......+.                 
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~-~L~~L~Ls~N~l~~~~~~~~-----------------   97 (266)
T d1p9ag_          38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLP-VLGTLDLSHNQLQSLPLLGQ-----------------   97 (266)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCT-TCCEEECCSSCCSSCCCCTT-----------------
T ss_pred             CcCCcCCCcCHHHhhcccccccccccccccccccc--ccccc-cccccccccccccccccccc-----------------
Confidence            4566777777777776  89999999999998875  56677 99999999999876222222                 


Q ss_pred             hcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCC
Q psy17253        106 VQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIH  183 (227)
Q Consensus       106 ~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~  183 (227)
                        ++++|+.|++++|.+..+ +..+..+.+++.|++.+|.++.+++..+..+..   ++.+++++|+++.++ ..+..++
T Consensus        98 --~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~---l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          98 --TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---LEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             --TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECTTSCCSCCCTTTTTTCT
T ss_pred             --cccccccccccccccceeeccccccccccccccccccccceecccccccccc---chhcccccccccccCcccccccc
Confidence              357899999999999887 556778899999999999999988877666666   999999999999887 5678899


Q ss_pred             CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      +|+.|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus       173 ~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeecccCCCccc-ChhHCCCCCCCEEEecCCCCC
Confidence            999999999999988 455567899999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-18  Score=132.04  Aligned_cols=205  Identities=18%  Similarity=0.313  Sum_probs=138.6

Q ss_pred             ccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCC
Q psy17253          8 CTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGA   85 (227)
Q Consensus         8 ~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~   85 (227)
                      +.|.|...     .+.|...    . ...+|+.++.++++|++++|.|..++..+|.+++ +|+.|++++|.+..  +..
T Consensus         4 ~~C~C~~~-----~i~c~~~----~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~   72 (242)
T d1xwdc1           4 RICHCSNR-----VFLCQES----K-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEAD   72 (242)
T ss_dssp             SSEEECSS-----EEEEESC----S-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCT-TCCEEEEESCTTCCEECSS
T ss_pred             CcCCCcCC-----EEEEeCC----C-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccc-hhhhhhhccccccceeecc
Confidence            34666532     7889762    2 3345556666899999999999999999999998 99999999999876  555


Q ss_pred             CCCCCC-CCCCcc----h-hhchhhhhcCCCcccEEEccCCCcccccc--cccCCCCCCEEEcCCCcCcccCCCCCCCCC
Q psy17253         86 ALRPID-VCAPPS----T-LDNLKNQVQGVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDDFIGLD  157 (227)
Q Consensus        86 ~~~~~~-l~~~~~----~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  157 (227)
                      .|.... +..+..    . .......+.++++|+.+++++|.+...+.  .+..+..+..+....+.+..+....+..+.
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~  152 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  152 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence            553211 111110    0 11112234567889999999988876543  223344555555566677776666554443


Q ss_pred             CCCcccEEEcCCCCCcCchhhhcCCCCCCE-EeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        158 SVTNIFELKLQHNEIENLDGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       158 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~-l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                        ..++.+++.+|+++.++.......++.. +.+.+|+++.+++..|.++++|+.|++++|.++++|+.
T Consensus       153 --~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         153 --FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             --SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             --ccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence              1367788888888877754445555544 45677788888777788888888888888888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.3e-18  Score=130.90  Aligned_cols=189  Identities=21%  Similarity=0.295  Sum_probs=148.5

Q ss_pred             CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEcc-CCCCCC-CCCCCCCC-CCCCCcch---h
Q psy17253         28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLT-KNNLRP-DGAALRPI-DVCAPPST---L   99 (227)
Q Consensus        28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~-~n~~~~-~~~~~~~~-~l~~~~~~---~   99 (227)
                      .+.+++....+..|..  ++++|++++|.+..++...+.... .+..+... .+.+.. +...|... .+..+...   +
T Consensus        39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~  117 (284)
T d1ozna_          39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (284)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCHHHhhccccccccccccccccccccccccccc-cccccccccccccccccchhhcccccCCEEecCCccc
Confidence            4667777777777776  899999999999988888887776 77777655 555555 56555322 12222111   1


Q ss_pred             hc-hhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-h
Q psy17253        100 DN-LKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-D  176 (227)
Q Consensus       100 ~~-~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~  176 (227)
                      .. ....+....+|+.+++++|.++.++ ..|..+.+|+.|++++|.++.+++..+.++++   |+.+++++|++..+ |
T Consensus       118 ~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~---L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS---LDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---CCEEECCSSCCCEECT
T ss_pred             ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc---cchhhhhhccccccCh
Confidence            11 1122334678999999999999984 57788899999999999999998888777766   99999999999877 4


Q ss_pred             hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT  220 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  220 (227)
                      ..+..+++++.|++++|++..+.+..|..+++|+.|++++|++.
T Consensus       195 ~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            77889999999999999999998899999999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=2.1e-18  Score=135.78  Aligned_cols=187  Identities=22%  Similarity=0.278  Sum_probs=128.1

Q ss_pred             ccCCCCC--CccEEEeCC-CCCC-CCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc----hhhchhhhh
Q psy17253         37 LQDRFGN--DSISLKIAV-SNLN-DLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS----TLDNLKNQV  106 (227)
Q Consensus        37 ~~~~~~~--~l~~L~l~~-~~l~-~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~----~~~~~~~~~  106 (227)
                      +|..+..  ++++|++++ |.+. .+|. .|..++ +|+.|++++|++.+ ++..+... .+..+..    ....++..+
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CChHHhcCcccccccccccccccccccc-cccccc-ccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            3455554  899999986 6776 5665 488888 99999999999987 55544211 1111110    111222334


Q ss_pred             cCCCcccEEEccCCCccc-ccccccCCCCC-CEEEcCCCcCcccCCCCCCCCC--------------------CCCcccE
Q psy17253        107 QGVTNIFELKLQHNEIEN-LDGALMGIHGL-SRLDLSHNKLRTISPDDFIGLD--------------------SVTNIFE  164 (227)
Q Consensus       107 ~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~--------------------~~~~L~~  164 (227)
                      ..++.++.+++++|.++. +|..+..+..+ +.+++..|.+++..+..+..+.                    .+++++.
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~  225 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456788888998888874 57777777654 7777777777655444332221                    2345778


Q ss_pred             EEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc-ccCCC
Q psy17253        165 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEET  225 (227)
Q Consensus       165 l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~lp~~  225 (227)
                      ++++++.+...+..+..+++++.|++++|++++..|..++.+++|+.|++++|+++ .+|+.
T Consensus       226 l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            88888887755555777788889999999988666778888899999999999888 57753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=3.8e-17  Score=119.72  Aligned_cols=111  Identities=32%  Similarity=0.508  Sum_probs=97.0

Q ss_pred             CcccEEEccCCCccc-c-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253        110 TNIFELKLQHNEIEN-L-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS  186 (227)
Q Consensus       110 ~~L~~L~l~~n~l~~-l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~  186 (227)
                      ++++.|+|++|.|+. + +..|..+++|+.|++++|.+..++++.+..+..   |+.|++++|+++.++ ..+.++++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~---L~~L~Ls~N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH---IQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT---CCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc---cceeeeccccccccCHHHHhCCCccc
Confidence            578999999999976 4 567788999999999999999988887777766   999999999999887 5678899999


Q ss_pred             EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253        187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      .|++++|+|+.+.+.+|..+++|+.+++++|++....
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            9999999999998899999999999999999886543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.9e-16  Score=115.55  Aligned_cols=148  Identities=22%  Similarity=0.438  Sum_probs=123.8

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|+++++.+..+..  +..++ +|+.|++++|+++. ++                     +.++++|+.|++++|.+
T Consensus        41 ~l~~L~l~~~~i~~l~~--l~~l~-nL~~L~Ls~N~l~~~~~---------------------l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG--VEYLN-NLTQINFSNNQLTDITP---------------------LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG---------------------GTTCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCCCCCccc--cccCC-CcCcCccccccccCccc---------------------ccCCccccccccccccc
Confidence            68999999999998864  77787 99999999999875 21                     22468899999999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      ..++. +..+++|+.|++.++.+....  .+..+   ++|+.+++++|++..++. +..+++++.|++.+|+++++.  .
T Consensus        97 ~~~~~-l~~l~~L~~L~l~~~~~~~~~--~~~~l---~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l~--~  167 (199)
T d2omxa2          97 ADITP-LANLTNLTGLTLFNNQITDID--PLKNL---TNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLK--P  167 (199)
T ss_dssp             CCCGG-GTTCTTCSEEECCSSCCCCCG--GGTTC---TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG--G
T ss_pred             ccccc-ccccccccccccccccccccc--ccchh---hhhHHhhhhhhhhccccc-ccccccccccccccccccCCc--c
Confidence            88875 788999999999998876653  23344   459999999999987764 778899999999999998873  4


Q ss_pred             cCCCCCCCEEEcCCCcCcccCC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++++++|+.|++++|++++++.
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccCCCCCCEEECCCCCCCCCcc
Confidence            8899999999999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5.5e-16  Score=115.00  Aligned_cols=148  Identities=25%  Similarity=0.375  Sum_probs=114.4

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      .++.|++++|.+..++.  ++.++ +|+.|++++|.++. ++                     +..+++|+.|++++|++
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l~-~L~~L~L~~n~i~~l~~---------------------~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDIKP---------------------LANLKNLGWLFLDENKV  102 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG---------------------GTTCTTCCEEECCSSCC
T ss_pred             CccEEECcCCCCCCchh--HhhCC-CCCEEeCCCccccCccc---------------------cccCccccccccccccc
Confidence            68899999999988864  67787 99999999998875 21                     12357899999999988


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      +.++. +..+++|+.|++.+|.+..+.  .+..+   +.++.+++++|.++..+ .+..+++|+.+++++|++.++.  .
T Consensus       103 ~~l~~-l~~l~~L~~L~l~~~~~~~~~--~l~~l---~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~--~  173 (210)
T d1h6ta2         103 KDLSS-LKDLKKLKSLSLEHNGISDIN--GLVHL---PQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV--P  173 (210)
T ss_dssp             CCGGG-GTTCTTCCEEECTTSCCCCCG--GGGGC---TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ccccc-ccccccccccccccccccccc--ccccc---ccccccccccccccccc-cccccccccccccccccccccc--c
Confidence            88774 778888999999888876543  23333   44888888888887654 3556788888888888888763  3


Q ss_pred             cCCCCCCCEEEcCCCcCcccCC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      ++.+++|+.|++++|.++++|.
T Consensus       174 l~~l~~L~~L~Ls~N~i~~l~~  195 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISDLRA  195 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG
T ss_pred             ccCCCCCCEEECCCCCCCCChh
Confidence            7788888888988888888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.2e-15  Score=102.29  Aligned_cols=106  Identities=29%  Similarity=0.444  Sum_probs=76.5

Q ss_pred             cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253        113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  192 (227)
Q Consensus       113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  192 (227)
                      ++|++++|.++.++. +..+.+|++|++++|.++.++. .+..+++   |+.|++++|.++.++. +..+++|+.+++++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~---L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRC---LEVLQASDNALENVDG-VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTT---CCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhhc---ccccccccccccccCc-cccccccCeEECCC
Confidence            467788888877764 6777788888888888877643 3444444   7888888888877764 66777888888888


Q ss_pred             CccccCCc-cccCCCCCCCEEEcCCCcCcccCC
Q psy17253        193 NKLRTISP-DDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       193 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      |++..+.. ..+..+++|+.+++++|+++.++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            88877642 456777788888888888776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.3e-14  Score=107.49  Aligned_cols=140  Identities=26%  Similarity=0.439  Sum_probs=116.6

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      ++++|++++|.++.++.  +..++ +|+.|++++|+++. +.                     +.++++|+.|++++|.+
T Consensus        69 ~L~~L~L~~n~i~~l~~--~~~l~-~L~~L~l~~n~i~~l~~---------------------l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKDLSS---------------------LKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCGGG---------------------GTTCTTCCEEECTTSCC
T ss_pred             CCCEEeCCCccccCccc--cccCc-ccccccccccccccccc---------------------ccccccccccccccccc
Confidence            79999999999999885  67787 99999999999874 21                     22468899999999998


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      ..++. +..+++++.+++.+|.++...  .+.   .+++|+.+++++|++..++. +..+++|+.|++++|+++++ + .
T Consensus       125 ~~~~~-l~~l~~l~~l~~~~n~l~~~~--~~~---~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l-~-~  195 (210)
T d1h6ta2         125 SDING-LVHLPQLESLYLGNNKITDIT--VLS---RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-A  195 (210)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCCG--GGG---GCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-G
T ss_pred             ccccc-ccccccccccccccccccccc--ccc---cccccccccccccccccccc-ccCCCCCCEEECCCCCCCCC-h-h
Confidence            87654 778899999999999987643  233   34559999999999988765 77899999999999999987 3 5


Q ss_pred             cCCCCCCCEEEcCC
Q psy17253        203 FIGLDSLKMLDISH  216 (227)
Q Consensus       203 ~~~~~~L~~L~l~~  216 (227)
                      +..+++|+.|++++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            89999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.9e-14  Score=107.71  Aligned_cols=161  Identities=22%  Similarity=0.347  Sum_probs=105.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      +++.|++.+|++++++.  +..++ +|+.|++++|.+.. .+ ..+        ..+.+..++        .+.++++|+
T Consensus        42 ~L~~L~l~~~~i~~l~~--l~~l~-~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~--------~l~~l~~L~  110 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEG--VQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--------AIAGLQSIK  110 (227)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--------GGTTCTTCC
T ss_pred             CcCEEECCCCCCCcchh--HhcCC-CCcEeecCCceeeccccccccccccccccccccccccc--------ccccccccc
Confidence            68899999999998853  78887 99999999998876 22 111        111111111        123456677


Q ss_pred             EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253        114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN  193 (227)
Q Consensus       114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  193 (227)
                      .+.++++....++. +...+.+..+.+..+.+....  .+..   .++|+.+++++|.+...+. +..+++|+.|++++|
T Consensus       111 ~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~---~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAG---LTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN  183 (227)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGG---CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccccccccccccch-hccccchhhhhchhhhhchhh--hhcc---ccccccccccccccccchh-hcccccceecccCCC
Confidence            77776666554433 344455666666555554322  1222   3348888888888765544 667788888888888


Q ss_pred             ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253        194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +++++.  .++.+++|+.|++++|+++++++
T Consensus       184 ~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         184 KISDIS--PLASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             CCCCCG--GGGGCTTCCEEECTTSCCCBCGG
T ss_pred             ccCCCh--hhcCCCCCCEEECcCCcCCCCcc
Confidence            887763  37778888888888888888774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.4e-14  Score=114.70  Aligned_cols=147  Identities=28%  Similarity=0.479  Sum_probs=70.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|++++|.+..++.  +..++ +++.|++++|.+.. ++                     +.++++|+.|+++++.+
T Consensus       220 ~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~~---------------------~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         220 NLDELSLNGNQLKDIGT--LASLT-NLTDLDLANNQISNLAP---------------------LSGLTKLTELKLGANQI  275 (384)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCT-TCSEEECCSSCCCCCGG---------------------GTTCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCCCCCcch--hhccc-ccchhccccCccCCCCc---------------------ccccccCCEeeccCccc
Confidence            45555555555555432  44444 55555555555543 11                     12234555555555555


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      +.++. +..+..++.+.+..|.+....  .+   ..+++++.+++++|+++.++. +..+++|+.|++++|+++.+.  .
T Consensus       276 ~~~~~-~~~~~~l~~l~~~~n~l~~~~--~~---~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~--~  346 (384)
T d2omza2         276 SNISP-LAGLTALTNLELNENQLEDIS--PI---SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS--S  346 (384)
T ss_dssp             CCCGG-GTTCTTCSEEECCSSCCSCCG--GG---GGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--G
T ss_pred             CCCCc-ccccccccccccccccccccc--cc---chhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh--h
Confidence            54432 334444444444444443321  11   122235555555555554432 444555555555555555441  3


Q ss_pred             cCCCCCCCEEEcCCCcCcccC
Q psy17253        203 FIGLDSLKMLDISHNLLTTLE  223 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~lp  223 (227)
                      ++.+++|+.|++++|++++++
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCG
T ss_pred             HcCCCCCCEEECCCCcCCCCh
Confidence            455555555555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=1.1e-15  Score=119.93  Aligned_cols=187  Identities=18%  Similarity=0.169  Sum_probs=129.2

Q ss_pred             cchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC-CC
Q psy17253         31 GQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC-AP   95 (227)
Q Consensus        31 ~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~-~~   95 (227)
                      +.+.+.+|..+..  ++++|++++|.+..++...+..+. .|+.+++++|.+.. .+..+           ..+.+. .+
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i  165 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             cccccccccccccccccchhhhccccccccccccccchh-hhcccccccccccccCchhhccCcccceeecccccccccc
Confidence            3444455666665  899999999999988877788887 89999999888766 33333           333332 33


Q ss_pred             cchhhchhhhhc-----------------CCCcccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCC
Q psy17253         96 PSTLDNLKNQVQ-----------------GVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD  157 (227)
Q Consensus        96 ~~~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  157 (227)
                      |..+..+.....                 .......+++..+.... +|..+..+.+++.+++.++.+...++ .+..++
T Consensus       166 p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~  244 (313)
T d1ogqa_         166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK  244 (313)
T ss_dssp             CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            433332221100                 01122234444444433 35556677889999999998876544 344444


Q ss_pred             CCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc-CcccC
Q psy17253        158 SVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLE  223 (227)
Q Consensus       158 ~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp  223 (227)
                         +|+.|++++|+++ .+|..+..+++|+.|++++|++++..| .++.+.+|+.+++.+|+ +.+.|
T Consensus       245 ---~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         245 ---NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ---TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             ---ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence               4999999999998 789889999999999999999996445 45788999999999997 66554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.8e-15  Score=104.52  Aligned_cols=112  Identities=23%  Similarity=0.295  Sum_probs=91.5

Q ss_pred             CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhh-hcCCCCCC
Q psy17253        108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGLS  186 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L~  186 (227)
                      ...+++.|+|++|.|+.++..+..+++|+.|++++|.++.+.  .+..+   ++|+.|++++|.++.++.. +..+++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l---~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLL---RRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCC---SSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccC---cchhhhhcccccccCCCccccccccccc
Confidence            346789999999999999876777889999999999998773  34444   4499999999999988754 46788999


Q ss_pred             EEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccCC
Q psy17253        187 RLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       187 ~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .|++++|++..+.. ..+..+++|+.+++++|+++.+|.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccc
Confidence            99999999988743 567889999999999999887763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5.4e-14  Score=103.14  Aligned_cols=137  Identities=30%  Similarity=0.511  Sum_probs=113.0

Q ss_pred             CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      .++++|++++|.++.++.  +..++ +|+.|++++|.+.. +.                     +.++++|+.|+++++.
T Consensus        62 ~nL~~L~Ls~N~l~~~~~--l~~l~-~L~~L~l~~n~~~~~~~---------------------l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP---------------------LANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCGG---------------------GTTCTTCSEEECCSSC
T ss_pred             CCcCcCccccccccCccc--ccCCc-ccccccccccccccccc---------------------cccccccccccccccc
Confidence            379999999999999875  88887 99999999998764 21                     2246889999999998


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      +..+++ +..+++|+.|++++|.+..++  .+..+++   ++.+++.+|.++.++. +..+++|+.|++++|+++++.  
T Consensus       118 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~~~~---L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~--  188 (199)
T d2omxa2         118 ITDIDP-LKNLTNLNRLELSSNTISDIS--ALSGLTS---LQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS--  188 (199)
T ss_dssp             CCCCGG-GTTCTTCSEEECCSSCCCCCG--GGTTCTT---CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--
T ss_pred             cccccc-cchhhhhHHhhhhhhhhcccc--ccccccc---ccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc--
Confidence            877654 778999999999999987654  3444444   9999999999998864 788999999999999999873  


Q ss_pred             ccCCCCCCCEE
Q psy17253        202 DFIGLDSLKML  212 (227)
Q Consensus       202 ~~~~~~~L~~L  212 (227)
                      .++.+++|+.|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            47788888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.8e-15  Score=105.87  Aligned_cols=127  Identities=19%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             hhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCC
Q psy17253         63 FQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH  142 (227)
Q Consensus        63 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~  142 (227)
                      |.... .+++|++++|+++.-+..+                   ..+++|+.|++++|.|+.+++ +..+++|+.|++++
T Consensus        14 ~~n~~-~lr~L~L~~n~I~~i~~~~-------------------~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~   72 (162)
T d1a9na_          14 YTNAV-RDRELDLRGYKIPVIENLG-------------------ATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNN   72 (162)
T ss_dssp             EECTT-SCEEEECTTSCCCSCCCGG-------------------GGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCS
T ss_pred             ccCcC-cCcEEECCCCCCCccCccc-------------------cccccCCEEECCCCCCCccCC-cccCcchhhhhccc
Confidence            34444 7899999999987511111                   235789999999999999864 88899999999999


Q ss_pred             CcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCC---ccccCCCCCCCEEE
Q psy17253        143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLD  213 (227)
Q Consensus       143 n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~---~~~~~~~~~L~~L~  213 (227)
                      |.++.+++..+..+++   |+.|++++|.++.++  ..+..+++|+.+++++|.++...   +..+..+++|+.||
T Consensus        73 N~i~~l~~~~~~~l~~---L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          73 NRICRIGEGLDQALPD---LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCEECSCHHHHCTT---CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccCCCccccccccc---cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999987665545555   999999999999886  35788899999999999998764   23577889999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.9e-14  Score=97.54  Aligned_cols=117  Identities=24%  Similarity=0.247  Sum_probs=91.3

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCC
Q psy17253         71 VNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP  150 (227)
Q Consensus        71 ~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  150 (227)
                      +.|++++|.++..+.                    +..+++|++|++++|.++.+|..+..+++|+.|++++|.++.++ 
T Consensus         1 R~L~Ls~n~l~~l~~--------------------l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-   59 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--------------------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-   59 (124)
T ss_dssp             SEEECTTSCCSSCCC--------------------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             CEEEcCCCCCCCCcc--------------------cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-
Confidence            467888888764110                    12357899999999999999988999999999999999998874 


Q ss_pred             CCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCC---ccccCCCCCCCEE
Q psy17253        151 DDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKML  212 (227)
Q Consensus       151 ~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~---~~~~~~~~~L~~L  212 (227)
                       .+..++   +|+.+++++|+++.++  ..+..+++|+.+++++|++....   ......+++++.+
T Consensus        60 -~~~~l~---~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          60 -GVANLP---RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -GGTTCS---SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -cccccc---ccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             344444   4999999999999876  45788899999999999997653   2234446766655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.1e-13  Score=110.68  Aligned_cols=142  Identities=23%  Similarity=0.465  Sum_probs=118.9

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +++.|++++|.+..++.  +..++ +|+.|+++++.+.. ++                     +.++..++.+.+..|.+
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~~~l~~~~~---------------------~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP---------------------LAGLTALTNLELNENQL  297 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG---------------------GTTCTTCSEEECCSSCC
T ss_pred             ccchhccccCccCCCCc--ccccc-cCCEeeccCcccCCCCc---------------------ccccccccccccccccc
Confidence            79999999999998875  77787 99999999999875 21                     11357789999999999


Q ss_pred             ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253        123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD  202 (227)
Q Consensus       123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  202 (227)
                      +.++. +..+.+++.|++++|.++++.+  +..+   ++|+.|++++|+++.++ .+..+++|+.|++++|+++++.+  
T Consensus       298 ~~~~~-~~~~~~l~~L~ls~n~l~~l~~--l~~l---~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         298 EDISP-ISNLKNLTYLTLYFNNISDISP--VSSL---TKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             SCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGC---TTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             ccccc-cchhcccCeEECCCCCCCCCcc--cccC---CCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--
Confidence            88654 7788999999999999987642  4444   45999999999999887 47889999999999999998854  


Q ss_pred             cCCCCCCCEEEcCCCc
Q psy17253        203 FIGLDSLKMLDISHNL  218 (227)
Q Consensus       203 ~~~~~~L~~L~l~~n~  218 (227)
                      +.++++|+.|++++|.
T Consensus       369 l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         369 LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GTTCTTCSEEECCCEE
T ss_pred             hccCCCCCEeeCCCCc
Confidence            8899999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=6.1e-13  Score=99.35  Aligned_cols=159  Identities=21%  Similarity=0.402  Sum_probs=117.3

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcc---hhhchhhhhcCCCcccEEEccCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPS---TLDNLKNQVQGVTNIFELKLQHN  120 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~l~~n  120 (227)
                      +|++|++++|.+..+.+  +..++ +++.+++++|.++........-.+..+..   ..... ..+...+.+..+.++.+
T Consensus        64 ~L~~L~ls~n~i~~~~~--l~~l~-~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~  139 (227)
T d1h6ua2          64 NLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLN  139 (227)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSS
T ss_pred             CCcEeecCCceeecccc--ccccc-ccccccccccccccccccccccccccccccccccccc-chhccccchhhhhchhh
Confidence            79999999999998865  78887 99999999998876211111111111100   00011 11234678899999998


Q ss_pred             CcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCc
Q psy17253        121 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP  200 (227)
Q Consensus       121 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  200 (227)
                      .+..... +..+++|+.|++.+|.+....  .++.++   +|+.|++++|+++.++. +..+++|+.|++++|+++.+.+
T Consensus       140 ~~~~~~~-~~~~~~L~~L~l~~n~~~~~~--~l~~l~---~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         140 QITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLS---KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             CCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCT---TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred             hhchhhh-hccccccccccccccccccch--hhcccc---cceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc
Confidence            8876544 667889999999999887544  244444   49999999999998865 7788999999999999998843


Q ss_pred             cccCCCCCCCEEEcC
Q psy17253        201 DDFIGLDSLKMLDIS  215 (227)
Q Consensus       201 ~~~~~~~~L~~L~l~  215 (227)
                        +..+++|+.|+++
T Consensus       213 --l~~l~~L~~L~ls  225 (227)
T d1h6ua2         213 --LANTSNLFIVTLT  225 (227)
T ss_dssp             --GTTCTTCCEEEEE
T ss_pred             --cccCCCCCEEEee
Confidence              8899999999986

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-13  Score=102.83  Aligned_cols=190  Identities=17%  Similarity=0.280  Sum_probs=129.3

Q ss_pred             CccchhhcccCCCCC--CccEEEeCCCCCCC-CChhhhhcccccccEEEccC-CCCCC-CCCCCCC-CCCCCCcc---hh
Q psy17253         29 SFGQVVDALQDRFGN--DSISLKIAVSNLND-LPSKTFQELGLQIVNLKLTK-NNLRP-DGAALRP-IDVCAPPS---TL   99 (227)
Q Consensus        29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~~-~~l~~~~~---~~   99 (227)
                      +.+.+....+..|.+  ++++|++++|.+.. ++..+|..++ .++.+.+.. |.+.. +...|.. ..+..+..   .+
T Consensus        37 s~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          37 VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             ESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             cCCcCCccChhHhhccchhhhhhhccccccceeecccccccc-ccccccccccccccccccccccccccccccccchhhh
Confidence            445566666666765  89999999998765 6777888887 888888764 56666 6655521 11111111   01


Q ss_pred             hchh--hhhcCCCcccEEEccCCCccccc-ccccCC-CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEE-EcCCCCCcC
Q psy17253        100 DNLK--NQVQGVTNIFELKLQHNEIENLD-GALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL-KLQHNEIEN  174 (227)
Q Consensus       100 ~~~~--~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l-~l~~n~~~~  174 (227)
                      ...+  .....+..+..+...++.+..++ ..+..+ ..++.+++.+|.++.+....+... +   ++.+ .+.+|+++.
T Consensus       116 ~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~-~---l~~~~~l~~n~l~~  191 (242)
T d1xwdc1         116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-Q---LDELNLSDNNNLEE  191 (242)
T ss_dssp             CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC-C---EEEEECTTCTTCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch-h---hhcccccccccccc
Confidence            1110  01123456666677777888774 456665 478899999999998876554332 2   4444 567888999


Q ss_pred             chh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253        175 LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET  225 (227)
Q Consensus       175 ~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~  225 (227)
                      +|. .+.++++|+.|++++|+++.+++..|..++.|+.+++  +.++.+|+-
T Consensus       192 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~--~~l~~lp~~  241 (242)
T d1xwdc1         192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL  241 (242)
T ss_dssp             CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE--ESSSCSCCC
T ss_pred             ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC--CCCCcCCCC
Confidence            984 5688999999999999999998878888887776655  457788863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=7.3e-12  Score=98.62  Aligned_cols=69  Identities=19%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             CCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC--CC-----CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253         42 GNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA--AL-----RPIDVCAPPSTLDNLKNQVQGVTNIF  113 (227)
Q Consensus        42 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~--~~-----~~~~l~~~~~~~~~~~~~~~~l~~L~  113 (227)
                      .+++++|++++|.|+.+|..    .. +|+.|++.+|+++. +.-  .+     ..+.+..+|.        .+.+++|+
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~----~~-~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~--------~~~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL----PQ-SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE--------LQNSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC----CT-TCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCC--------CTTCTTCC
T ss_pred             CCCCCEEECCCCCCcccccc----hh-hhhhhhhhhcccchhhhhccccccccccccccccccc--------hhhhccce
Confidence            45799999999999988853    33 88999999998876 321  11     3344444442        12467888


Q ss_pred             EEEccCCCcc
Q psy17253        114 ELKLQHNEIE  123 (227)
Q Consensus       114 ~L~l~~n~l~  123 (227)
                      .|+++++.+.
T Consensus       124 ~L~l~~~~~~  133 (353)
T d1jl5a_         124 IIDVDNNSLK  133 (353)
T ss_dssp             EEECCSSCCS
T ss_pred             eecccccccc
Confidence            9998877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=92.02  Aligned_cols=84  Identities=29%  Similarity=0.368  Sum_probs=46.5

Q ss_pred             CCcccEEEccCC-Ccccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCC
Q psy17253        109 VTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS  186 (227)
Q Consensus       109 l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~  186 (227)
                      +++++.|++.++ .++.+ +.+|..+++|+.|++++|+++.+++..|..+++   |+.|++++|+++.++........++
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~---L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR---LSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC---CCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccc---ccceeccCCCCcccChhhhcccccc
Confidence            355666666443 35555 334555666666666666666665555554444   6666666666665553333333456


Q ss_pred             EEeCCCCcc
Q psy17253        187 RLDLSHNKL  195 (227)
Q Consensus       187 ~l~l~~n~l  195 (227)
                      .|++++|.+
T Consensus       107 ~L~L~~Np~  115 (156)
T d2ifga3         107 ELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCC
T ss_pred             ccccCCCcc
Confidence            666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-12  Score=91.26  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=25.6

Q ss_pred             CccEEEeCCC-CCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253         44 DSISLKIAVS-NLNDLPSKTFQELGLQIVNLKLTKNNLRP   82 (227)
Q Consensus        44 ~l~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~n~~~~   82 (227)
                      ++++|+++++ .+..++..+|.+++ +|+.|++++|+++.
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~   70 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRF   70 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCE
T ss_pred             ccCeeecCCCccccccCchhhcccc-ccCcceeeccccCC
Confidence            6777777655 47777777777666 66666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.2e-14  Score=106.57  Aligned_cols=115  Identities=26%  Similarity=0.312  Sum_probs=91.7

Q ss_pred             hhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCC
Q psy17253        104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIH  183 (227)
Q Consensus       104 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  183 (227)
                      ..+..+++|+.|++++|.|+.+++ +..+++|+.|++++|.++.++. ....   ++.|+.|++++|.++.++. +..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~-~~~~---~~~L~~L~l~~N~i~~l~~-~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIEN-LDAV---ADTLEELWISYNQIASLSG-IEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSS-HHHH---HHHCCEEECSEEECCCHHH-HHHHH
T ss_pred             hHHhcccccceeECcccCCCCccc-ccCCccccChhhcccccccccc-cccc---ccccccccccccccccccc-ccccc
Confidence            344456899999999999999864 8888999999999999877642 1111   2348999999999988754 66778


Q ss_pred             CCCEEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccCC
Q psy17253        184 GLSRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       184 ~L~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      +|+.|++++|+++.+.. ..+..+++|+.|++++|+++..+.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            89999999999988742 568899999999999998766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=3.4e-14  Score=104.16  Aligned_cols=143  Identities=24%  Similarity=0.299  Sum_probs=105.5

Q ss_pred             CccEEEeCCC--CCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVS--NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~--~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      ..+.+++.+.  .+..++ ..+..+. +|+.|++++|++..            ++ .+       .++++|+.|++++|.
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~~L~-~L~~L~Ls~n~I~~------------i~-~l-------~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLSTLK-ACKHLALSTNNIEK------------IS-SL-------SGMENLRILSLGRNL   81 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHHHTT-TCCEEECSEEEESC------------CC-CH-------HHHTTCCEEECCEEE
T ss_pred             ccceeeeecccCchhhhh-hHHhccc-ccceeECcccCCCC------------cc-cc-------cCCccccChhhcccc
Confidence            4666777654  344454 3578887 99999999998764            11 11       235789999999999


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCC
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTIS  199 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~  199 (227)
                      ++.+++.+..+++|+.|++.+|.++.+.  .+   ..+++|+.|++++|+++.++  ..+..+++|+.|++++|++....
T Consensus        82 i~~i~~~~~~~~~L~~L~l~~N~i~~l~--~~---~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_          82 IKKIENLDAVADTLEELWISYNQIASLS--GI---EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ECSCSSHHHHHHHCCEEECSEEECCCHH--HH---HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cccccccccccccccccccccccccccc--cc---cccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            9988765555678999999999988763  23   33455999999999998876  46788999999999999886542


Q ss_pred             cc----------ccCCCCCCCEEE
Q psy17253        200 PD----------DFIGLDSLKMLD  213 (227)
Q Consensus       200 ~~----------~~~~~~~L~~L~  213 (227)
                      +.          .+..+++|+.||
T Consensus       157 ~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         157 KENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhhHHHHHHHHCCCcCEeC
Confidence            22          256688898887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=1e-08  Score=80.12  Aligned_cols=139  Identities=19%  Similarity=0.259  Sum_probs=91.2

Q ss_pred             CccEEEeCCCCCCCCChhhhhccccc-ccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQ-IVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE  121 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~-L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  121 (227)
                      ++++||+++++++.+|.     .. . |+.|++++|+++. |..                       +.+|+.|++++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~-----~~-~~L~~L~Ls~N~l~~lp~~-----------------------~~~L~~L~l~~n~   89 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE-----LP-PHLESLVASCNSLTELPEL-----------------------PQSLKSLLVDNNN   89 (353)
T ss_dssp             TCSEEECTTSCCSCCCS-----CC-TTCSEEECCSSCCSSCCCC-----------------------CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCC-----CC-CCCCEEECCCCCCcccccc-----------------------hhhhhhhhhhhcc
Confidence            57888888888888874     22 6 7888888888775 321                       2568888888888


Q ss_pred             cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253        122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD  201 (227)
Q Consensus       122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  201 (227)
                      ++.++...   +.|++|++++|.+..++.  ++.+   +.|+.+++.++.+...+..   ...+..+.+..+.....  .
T Consensus        90 l~~l~~lp---~~L~~L~L~~n~l~~lp~--~~~l---~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~--~  156 (353)
T d1jl5a_          90 LKALSDLP---PLLEYLGVSNNQLEKLPE--LQNS---SFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL--P  156 (353)
T ss_dssp             CSCCCSCC---TTCCEEECCSSCCSSCCC--CTTC---TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC--C
T ss_pred             cchhhhhc---cccccccccccccccccc--hhhh---ccceeeccccccccccccc---cccccchhhcccccccc--c
Confidence            87765421   358888888888877642  2333   4488888888877655432   23445555555444332  3


Q ss_pred             ccCCCCCCCEEEcCCCcCcccCC
Q psy17253        202 DFIGLDSLKMLDISHNLLTTLEE  224 (227)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~lp~  224 (227)
                      .+..++.++.+++..|....++.
T Consensus       157 ~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         157 ELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccceeccccccccccccc
Confidence            45556667777777776665553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.3e-10  Score=84.79  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=94.8

Q ss_pred             CccEEEeCCCCCCCC-ChhhhhcccccccEEEccCCCCCC-CCCCC-CCCCCCCCcc----hh--hchhhhhcCCCcccE
Q psy17253         44 DSISLKIAVSNLNDL-PSKTFQELGLQIVNLKLTKNNLRP-DGAAL-RPIDVCAPPS----TL--DNLKNQVQGVTNIFE  114 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-~~~~l~~~~~----~~--~~~~~~~~~l~~L~~  114 (227)
                      ++++||++++.+... ....+...+ +|+.|+++++.+.. ....+ ..-.+..+.-    .+  ..+..+..++++|+.
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCC-CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            688888888776532 233455565 78888888887653 11111 1111111110    01  122333445677788


Q ss_pred             EEccCC-Cccc--ccccccC-CCCCCEEEcCCC--cCcccCCCCCCCCCCCCcccEEEcCCCC-CcC-chhhhcCCCCCC
Q psy17253        115 LKLQHN-EIEN--LDGALMG-IHGLSRLDLSHN--KLRTISPDDFIGLDSVTNIFELKLQHNE-IEN-LDGALMGIHGLS  186 (227)
Q Consensus       115 L~l~~n-~l~~--l~~~~~~-l~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~-~~~~~~~~~~L~  186 (227)
                      |+++++ .++.  +...+.. .++|+.|++.+.  .++......+  ...+++|++|+++++. ++. ....+..+++|+
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccchhhhcccccccchhhhccccccccccccccc--ccccccccccccccccCCCchhhhhhcccCcCC
Confidence            887775 3332  2222222 356777777653  2322111111  1123458888888764 553 335566778888


Q ss_pred             EEeCCCC-ccccCCccccCCCCCCCEEEcCCC
Q psy17253        187 RLDLSHN-KLRTISPDDFIGLDSLKMLDISHN  217 (227)
Q Consensus       187 ~l~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  217 (227)
                      .|++++| .++......++.+++|+.|++.++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8888885 566554556777888888888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.87  E-value=2.7e-09  Score=83.90  Aligned_cols=175  Identities=20%  Similarity=0.250  Sum_probs=108.0

Q ss_pred             CccEEEeCCCCCCCCChhh----hhcccccccEEEccCCCCCC-CCC-------------------CC-----CCCCCCC
Q psy17253         44 DSISLKIAVSNLNDLPSKT----FQELGLQIVNLKLTKNNLRP-DGA-------------------AL-----RPIDVCA   94 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~----~~~~~~~L~~L~l~~n~~~~-~~~-------------------~~-----~~~~l~~   94 (227)
                      +++.|++++|.++......    +...+ +|+.|++++|.+.. ...                   .+     ..+.+  
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i--  170 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL--  170 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC--
T ss_pred             Ccccccccccccccccccchhhhhcccc-cchheecccccccccccccccccccccccccccccCcccceeecccccc--
Confidence            6888999998887654333    33455 78899998887642 100                   00     11111  


Q ss_pred             CcchhhchhhhhcCCCcccEEEccCCCccc------ccccccCCCCCCEEEcCCCcCcccCCCCC-CCCCCCCcccEEEc
Q psy17253         95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKL  167 (227)
Q Consensus        95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~l~l  167 (227)
                      -+..+..+...+...++++.|++++|.++.      +...+..+++|+.|++++|.++......+ ..+..+++|+.|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            112333444445567788888888888764      23345667888889998888754321111 12334455888999


Q ss_pred             CCCCCcCc-----hhhhc--CCCCCCEEeCCCCccccCCc----ccc-CCCCCCCEEEcCCCcCcc
Q psy17253        168 QHNEIENL-----DGALM--GIHGLSRLDLSHNKLRTISP----DDF-IGLDSLKMLDISHNLLTT  221 (227)
Q Consensus       168 ~~n~~~~~-----~~~~~--~~~~L~~l~l~~n~l~~~~~----~~~-~~~~~L~~L~l~~n~l~~  221 (227)
                      ++|.+...     ...+.  ....++.|++++|+++....    ..+ ...+.|+.|++++|.+..
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            99888742     22232  23568889999988865321    222 246778899999988864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.3e-09  Score=82.27  Aligned_cols=169  Identities=18%  Similarity=0.231  Sum_probs=90.1

Q ss_pred             CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C-CCCC------CCCCCCCCcchhhchhhhhcCCCcccEE
Q psy17253         44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D-GAAL------RPIDVCAPPSTLDNLKNQVQGVTNIFEL  115 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-~~~~------~~~~l~~~~~~~~~~~~~~~~l~~L~~L  115 (227)
                      .+..+.+....+.......+. .. .|+.|+++++.+.. . ...+      ....+...+-. ......+..+++|+.|
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~-~~-~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L  100 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFS-PF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRL  100 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCC-CB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEE
T ss_pred             cceEeeccccccccchhhhcc-CC-CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCc
Confidence            355666666655443332222 22 79999999988764 1 1111      11111111100 1111223345667777


Q ss_pred             EccCC-Cccc--ccccccCCCCCCEEEcCCC-cCcccCC-CCCCCCCCCCcccEEEcCCCC--CcC--chhhhcCCCCCC
Q psy17253        116 KLQHN-EIEN--LDGALMGIHGLSRLDLSHN-KLRTISP-DDFIGLDSVTNIFELKLQHNE--IEN--LDGALMGIHGLS  186 (227)
Q Consensus       116 ~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~~~~L~~l~l~~n~--~~~--~~~~~~~~~~L~  186 (227)
                      +++++ .++.  +..-+..+++|+.|+++++ .++.... ..+..  ..+.|+.|++++..  ++.  +......+++|+
T Consensus       101 ~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2         101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH--VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH--SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             cccccccccccccchhhHHHHhccccccccccccccccchhhhcc--cccccchhhhccccccccccccccccccccccc
Confidence            77664 4442  2222344566777777664 2322110 00110  12347778877642  332  223335678899


Q ss_pred             EEeCCCC-ccccCCccccCCCCCCCEEEcCCC
Q psy17253        187 RLDLSHN-KLRTISPDDFIGLDSLKMLDISHN  217 (227)
Q Consensus       187 ~l~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  217 (227)
                      .|++++| .+++.....+..+++|+.|+++++
T Consensus       179 ~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            9999986 466655667788899999999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.81  E-value=1e-09  Score=86.47  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             CccEEEeCCCCCCCCChhhh-------------hcccccccEEEccCCCCCC-CCCCC----------CCCCCCC--Ccc
Q psy17253         44 DSISLKIAVSNLNDLPSKTF-------------QELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCA--PPS   97 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~--~~~   97 (227)
                      .++.|++++|.+.......+             ...+ .++.+++++|.+.. ....+          ....+..  +..
T Consensus       122 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~-~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  200 (344)
T d2ca6a1         122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  200 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             cchheecccccccccccccccccccccccccccccCc-ccceeecccccccccccccccchhhhhhhhcccccccccccc
Confidence            68889998887653211111             1233 67788888887753 21111          1111111  111


Q ss_pred             -hh-hchhhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-C--CCCCcccEEEc
Q psy17253         98 -TL-DNLKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-L--DSVTNIFELKL  167 (227)
Q Consensus        98 -~~-~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~--~~~~~L~~l~l  167 (227)
                       .+ ..+...+...++|+.|++++|.++.     +...+...++|+.|++++|.++......+.. +  .....|+.|++
T Consensus       201 ~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~l  280 (344)
T d2ca6a1         201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  280 (344)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             cccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEEC
Confidence             11 1233345567899999999999864     3456778899999999999987643222211 1  11245999999


Q ss_pred             CCCCCcC-----chhhh-cCCCCCCEEeCCCCccccC
Q psy17253        168 QHNEIEN-----LDGAL-MGIHGLSRLDLSHNKLRTI  198 (227)
Q Consensus       168 ~~n~~~~-----~~~~~-~~~~~L~~l~l~~n~l~~~  198 (227)
                      ++|.++.     +...+ ...++|+.|++++|.+...
T Consensus       281 s~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         281 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            9999873     23333 2567899999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.7e-08  Score=77.50  Aligned_cols=112  Identities=21%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             CCcccEEEccCCCcccc-----cccccCCCCCCEEEcCCCcCcccCCCCCC-CC-CCCCcccEEEcCCCCCcC-----ch
Q psy17253        109 VTNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRTISPDDFI-GL-DSVTNIFELKLQHNEIEN-----LD  176 (227)
Q Consensus       109 l~~L~~L~l~~n~l~~l-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~-~~~~~L~~l~l~~n~~~~-----~~  176 (227)
                      ...|+.++++++.++..     ...+....+|+.|+|++|.++......+. .+ ...+.|+.|++++|.++.     +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            45788888888877642     22334556788888888887642211111 01 122348888888888864     23


Q ss_pred             hhhcCCCCCCEEeCCCCccccCCcc----ccC-CCCCCCEEEcCCCcCc
Q psy17253        177 GALMGIHGLSRLDLSHNKLRTISPD----DFI-GLDSLKMLDISHNLLT  220 (227)
Q Consensus       177 ~~~~~~~~L~~l~l~~n~l~~~~~~----~~~-~~~~L~~L~l~~n~l~  220 (227)
                      ..+...++|+.|++++|+++.....    .+. ....|+.|++.+|.+.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            4455668888888888888653221    222 2335888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-07  Score=75.71  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=58.8

Q ss_pred             CccEEEeCCCCCCCCC-hhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253         44 DSISLKIAVSNLNDLP-SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI  122 (227)
Q Consensus        44 ~l~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l  122 (227)
                      +|+.||+++++++... ...+..++ +++.|++++|.++              +..+..+...+...++|+.|+|++|.|
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~-~l~~L~L~~~~i~--------------~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLT--------------EARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHT-TCSEEEEESSCCC--------------HHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCC-CCCEEEeCCCCCC--------------HHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            3566777776666432 23344455 6666777666654              123333344444556666666666666


Q ss_pred             cc-----ccccccC-CCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCc
Q psy17253        123 EN-----LDGALMG-IHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIE  173 (227)
Q Consensus       123 ~~-----l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~  173 (227)
                      +.     +...+.. ..+|+.|++++|.++......+. .+..+++|+.|++++|.+.
T Consensus        68 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          68 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            43     1222221 23566666666666543211111 1223344666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=9.1e-08  Score=66.91  Aligned_cols=80  Identities=25%  Similarity=0.174  Sum_probs=39.2

Q ss_pred             CCCCCCEEEcCCCcCcccCC--CCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCc-------
Q psy17253        131 GIHGLSRLDLSHNKLRTISP--DDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISP-------  200 (227)
Q Consensus       131 ~l~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~-------  200 (227)
                      .+++|++|++++|+++.+.+  ..+.   .+++|+.|++++|.++.+++ .......++.+++++|.+.....       
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~---~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQ---KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHH---HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHh---hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34555555555555554321  1111   22335666666666665543 11223346666666666654322       


Q ss_pred             cccCCCCCCCEEE
Q psy17253        201 DDFIGLDSLKMLD  213 (227)
Q Consensus       201 ~~~~~~~~L~~L~  213 (227)
                      ..+..+++|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2245566666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.4e-08  Score=69.18  Aligned_cols=84  Identities=24%  Similarity=0.280  Sum_probs=61.8

Q ss_pred             hhhhcCCCcccEEEccCCCccccc---ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch---
Q psy17253        103 KNQVQGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD---  176 (227)
Q Consensus       103 ~~~~~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~---  176 (227)
                      ..+...+++|++|++++|+|+.++   ..+..+++|+.|++++|.++.+..-..  +.. ..|+.+++++|.+....   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~--l~~-~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK--IKG-LKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH--HTT-CCCSSCCCTTSTTSSSSSSH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh--hhc-cccceeecCCCCcCcCcccc
Confidence            334456899999999999999863   456778999999999999988754222  222 23889999999986432   


Q ss_pred             -----hhhcCCCCCCEEe
Q psy17253        177 -----GALMGIHGLSRLD  189 (227)
Q Consensus       177 -----~~~~~~~~L~~l~  189 (227)
                           ..+..+++|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                 1246778898887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=1.4e-06  Score=60.96  Aligned_cols=116  Identities=10%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             hhhhcCCCcccEEEccCC-Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCCCcCc
Q psy17253        103 KNQVQGVTNIFELKLQHN-EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNEIENL  175 (227)
Q Consensus       103 ~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~  175 (227)
                      ..+....++|+.|+|+++ .++.     +...+....+|+.|++++|.+.......++. +...+.|+.|++++|.+..-
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            334445689999999974 4653     2345667788999999999987644333332 33346699999999998742


Q ss_pred             -----hhhhcCCCCCCEEeCCCCccccCC-------ccccCCCCCCCEEEcCCCc
Q psy17253        176 -----DGALMGIHGLSRLDLSHNKLRTIS-------PDDFIGLDSLKMLDISHNL  218 (227)
Q Consensus       176 -----~~~~~~~~~L~~l~l~~n~l~~~~-------~~~~~~~~~L~~L~l~~n~  218 (227)
                           ...+...+.|+.|++++|.+..+.       ..++...+.|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                 245667788999999999876653       2345567889999987764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=8.2e-06  Score=56.88  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             chhhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCC-CCCCCCCcccEEEcCCCCCcC
Q psy17253        101 NLKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKLQHNEIEN  174 (227)
Q Consensus       101 ~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  174 (227)
                      .+...+...++|+.|++++|.++.     +...+...++|+.|++++|.++......+ ..+...++|++|++++|.+..
T Consensus        35 ~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          35 SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            333344445678888888888764     23445566788888888888775432222 234445668888888886654


Q ss_pred             c--------hhhhcCCCCCCEEeCCCCc
Q psy17253        175 L--------DGALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       175 ~--------~~~~~~~~~L~~l~l~~n~  194 (227)
                      +        ...+...+.|+.|+++.+.
T Consensus       115 ~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         115 LGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3        2334456778888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=1.6e-05  Score=55.15  Aligned_cols=117  Identities=15%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             hhhhcCCCcccEEEccC-CCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcC-
Q psy17253        103 KNQVQGVTNIFELKLQH-NEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIEN-  174 (227)
Q Consensus       103 ~~~~~~l~~L~~L~l~~-n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~-  174 (227)
                      ..+....++|+.|++++ +.++.     +...+...++|+.|++++|.++......++ .+...+.++.++++++.+.. 
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            34444668999999997 45653     345567788999999999988654332222 12334569999999998862 


Q ss_pred             ----chhhhcCCCCCCEEeC--CCCccccCC----ccccCCCCCCCEEEcCCCcC
Q psy17253        175 ----LDGALMGIHGLSRLDL--SHNKLRTIS----PDDFIGLDSLKMLDISHNLL  219 (227)
Q Consensus       175 ----~~~~~~~~~~L~~l~l--~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l  219 (227)
                          +...+...++++.+++  ++|.+....    ...+...+.|+.|++..+..
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                2245566778887655  456665421    34556788999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=0.00014  Score=50.20  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             CCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCC-CCCCCCCcccEEEc--CCCCCcC-----
Q psy17253        108 GVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKL--QHNEIEN-----  174 (227)
Q Consensus       108 ~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~L~~l~l--~~n~~~~-----  174 (227)
                      ..++|+.|++++|.++.     +...+....+++.+++.++.+.......+ ..+...+.|+.+++  ++|.+..     
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            44556666666666543     22334445566666666666543221111 11222334555444  3445542     


Q ss_pred             chhhhcCCCCCCEEeCCCCc
Q psy17253        175 LDGALMGIHGLSRLDLSHNK  194 (227)
Q Consensus       175 ~~~~~~~~~~L~~l~l~~n~  194 (227)
                      +...+...+.|+.|+++.+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            22344556677777776654