Psyllid ID: psy17268


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFYKEDDDNGT
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEEEEEccccccccccccEEEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccEEEEEEEEEcccEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccccccccEEEEEcccccEccccccEEEEEEEEccccccHHHccEEEEEEEEEcccccEEEccccccEEccccHHHHHHHHHHHcHHHHHccccccEEEEEEcHHHcccccccccEEEEEEEEcccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccc
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYtyipnishvrpvhlkfnacdeqkgvcsyptahvQLTKRHQLLMVGQPYKILMhlempesptnieLGMFMVCAQLkdktgdlisHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEyeedqnhpvtdIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSwwqlygpkedlrsLFFYGRlrslatsdeesffykedddngt
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSlatsdeesffykedddngt
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHssmlvllsasvlWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFYKEDDDNGT
******QFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLA*****************
********INRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGP**********************************
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFF*********
MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYG***********************
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKNFVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFYKEDDDNGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query293 2.2.26 [Sep-21-2011]
Q9V3X4370 Seipin OS=Drosophila mela yes N/A 0.825 0.654 0.458 1e-68
Q5FVJ6377 Seipin OS=Rattus norvegic yes N/A 0.723 0.562 0.449 9e-50
Q96G97 398 Seipin OS=Homo sapiens GN yes N/A 0.723 0.532 0.444 4e-49
Q5E9P6394 Seipin OS=Bos taurus GN=B yes N/A 0.723 0.538 0.444 2e-48
Q9Z2E9383 Seipin OS=Mus musculus GN yes N/A 0.723 0.553 0.439 7e-47
O14119249 Seipin homolog OS=Schizos yes N/A 0.665 0.783 0.266 8e-11
>sp|Q9V3X4|BSCL2_DROME Seipin OS=Drosophila melanogaster GN=Seipin PE=2 SV=1 Back     alignment and function desciption
 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 172/242 (71%)

Query: 14  ELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKF 73
           + ++ ++ +++  V E +    ++      ++W+++F+Y AFYY Y+P ISH RPVH++F
Sbjct: 35  DRVRSKADEKVGTVRELVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQF 94

Query: 74  NACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKD 133
             C E    C++P AHV LTK+ QLLMVGQ YK++++++MPESP N+ELGMFMVCA+++D
Sbjct: 95  KTCLETSTPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCAEMRD 154

Query: 134 KTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHP 193
               L  HSCRSAM+ YRS L+  + T V +P  +LG  EE Q + +E+FS Y E++ HP
Sbjct: 155 YDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVPVEIFSRYLEERQHP 214

Query: 194 VTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSW 253
           +TD+Y+E+QS+ I  Y+ ++HI A  +GLRY+MF WP+LSA++ IS+NL FI+ +  +SW
Sbjct: 215 ITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNWPVLSAIVAISTNLFFILVVFLLSW 274

Query: 254 WQ 255
           + 
Sbjct: 275 YH 276




Is a regulator of lipid catabolism essential for adipocyte differentiation. May also be involved in the central regulation of energy homeostasis (By similarity). Necessary for correct lipid storage and lipid droplets maintenance; plays a tissue-autonomous role in controlling lipid storage in adipocytes and in preventing ectopic lipid droplet formation in non-adipose tissues. May participate in phosphatidic acid metabolism and subsequently down-regulate lipogenesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q5FVJ6|BSCL2_RAT Seipin OS=Rattus norvegicus GN=Bscl2 PE=2 SV=1 Back     alignment and function description
>sp|Q96G97|BSCL2_HUMAN Seipin OS=Homo sapiens GN=BSCL2 PE=1 SV=3 Back     alignment and function description
>sp|Q5E9P6|BSCL2_BOVIN Seipin OS=Bos taurus GN=BSCL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2E9|BSCL2_MOUSE Seipin OS=Mus musculus GN=Bscl2 PE=1 SV=2 Back     alignment and function description
>sp|O14119|BSCLH_SCHPO Seipin homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.04 PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
307195519340 Seipin [Harpegnathos saltator] 0.935 0.805 0.536 2e-84
345485428343 PREDICTED: seipin-like [Nasonia vitripen 0.901 0.769 0.537 9e-82
328788868333 PREDICTED: seipin-like isoform 1 [Apis m 0.846 0.744 0.568 2e-81
380026282333 PREDICTED: seipin-like [Apis florea] 0.720 0.633 0.649 7e-81
322796920336 hypothetical protein SINV_04879 [Solenop 0.897 0.782 0.543 2e-80
383853550329 PREDICTED: seipin-like [Megachile rotund 0.962 0.857 0.501 7e-78
332016272332 Seipin [Acromyrmex echinatior] 0.870 0.768 0.545 2e-76
350427370334 PREDICTED: seipin-like [Bombus impatiens 0.709 0.622 0.639 2e-76
340710543335 PREDICTED: seipin-like [Bombus terrestri 0.709 0.620 0.634 8e-76
332375056336 unknown [Dendroctonus ponderosae] 0.976 0.851 0.476 1e-75
>gi|307195519|gb|EFN77405.1| Seipin [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 207/274 (75%)

Query: 9   INRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRP 68
           +NR+   +++++ + +Q+  + I   +++V+ +  ++W+S+FLY AFYYTY+P++S+VRP
Sbjct: 10  VNRKWFAVRKKTTQNVQSARDAIVRGAIIVVCAIFIIWLSVFLYTAFYYTYMPSMSYVRP 69

Query: 69  VHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVC 128
           VHL+F +CDEQKG+CS+P+AHVQLT + QLLM+GQPYK+ +HLEMPESPTN ELGMFMVC
Sbjct: 70  VHLQFKSCDEQKGICSFPSAHVQLTNKQQLLMIGQPYKVNLHLEMPESPTNKELGMFMVC 129

Query: 129 AQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEE 188
           AQL+ + G L+ HSCRSAMLHYRS+LL TL TL  +P +I G  EEKQ + LELF  +EE
Sbjct: 130 AQLRSRDGFLVDHSCRSAMLHYRSTLLHTLTTLTFSPMMIFGNVEEKQDVVLELFGNFEE 189

Query: 189 DQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFI 248
           DQ+HPVT IYI++QSR I  YSAS+ INA L+GLRY+MF WP+LSA++GI +NL FI  +
Sbjct: 190 DQSHPVTIIYIQIQSRHIEFYSASLMINAHLTGLRYLMFHWPILSAIVGIGTNLFFIALV 249

Query: 249 CAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEES 282
           C +S+      +E+    F Y +  +    D ++
Sbjct: 250 CTLSYLHFVVDEENTDENFSYEKGETEDEKDNKT 283




Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485428|ref|XP_003425269.1| PREDICTED: seipin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328788868|ref|XP_394330.4| PREDICTED: seipin-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380026282|ref|XP_003696881.1| PREDICTED: seipin-like [Apis florea] Back     alignment and taxonomy information
>gi|322796920|gb|EFZ19272.1| hypothetical protein SINV_04879 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383853550|ref|XP_003702285.1| PREDICTED: seipin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332016272|gb|EGI57185.1| Seipin [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350427370|ref|XP_003494735.1| PREDICTED: seipin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340710543|ref|XP_003393847.1| PREDICTED: seipin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332375056|gb|AEE62669.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
FB|FBgn0040336370 Seipin "Seipin" [Drosophila me 0.938 0.743 0.432 9.7e-64
RGD|1308135377 Bscl2 "Berardinelli-Seip conge 0.716 0.557 0.448 2.6e-47
UNIPROTKB|Q96G97 398 BSCL2 "Seipin" [Homo sapiens ( 0.716 0.527 0.443 5.4e-47
MGI|MGI:1298392383 Bscl2 "Bernardinelli-Seip cong 0.716 0.548 0.439 1.4e-46
ZFIN|ZDB-GENE-051113-140 441 bscl2 "Bernardinelli-Seip cong 0.808 0.537 0.420 1.8e-46
UNIPROTKB|Q2KJD5 396 BSCL2 "Seipin" [Bos taurus (ta 0.716 0.530 0.443 2.3e-46
UNIPROTKB|Q5E9P6394 BSCL2 "Seipin" [Bos taurus (ta 0.716 0.532 0.443 2.3e-46
ZFIN|ZDB-GENE-050320-130392 zgc:110829 "zgc:110829" [Danio 0.716 0.535 0.437 1e-45
UNIPROTKB|I3LC49 463 BSCL2 "Uncharacterized protein 0.713 0.451 0.439 9.1e-45
UNIPROTKB|F8W7Q8223 BSCL2 "Seipin" [Homo sapiens ( 0.604 0.793 0.464 5.3e-40
FB|FBgn0040336 Seipin "Seipin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/280 (43%), Positives = 186/280 (66%)

Query:    16 LKQRSIKELQNVWEKIFHXXXXXXXXXXXXWISIFLYIAFYYTYIPNISHVRPVHLKFNA 75
             ++ ++ +++  V E +              W+++F+Y AFYY Y+P ISH RPVH++F  
Sbjct:    37 VRSKADEKVGTVRELVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKT 96

Query:    76 CDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKT 135
             C E    C++P AHV LTK+ QLLMVGQ YK++++++MPESP N+ELGMFMVCA+++D  
Sbjct:    97 CLETSTPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCAEMRDYD 156

Query:   136 GDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFSEYEEDQNHPVT 195
               L  HSCRSAM+ YRS L+  + T V +P  +LG  EE Q + +E+FS Y E++ HP+T
Sbjct:   157 SMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVPVEIFSRYLEERQHPIT 216

Query:   196 DIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQ 255
             D+Y+E+QS+ I  Y+ ++HI A  +GLRY+MF WP+LSA++ IS+NL FI+ +  +SW+ 
Sbjct:   217 DVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNWPVLSAIVAISTNLFFILVVFLLSWYH 276

Query:   256 LYGPKEDLRSLFF-YGRL-RSLATS--DEESFFYKEDDDN 291
              +   + L S+   Y RL +SL       ++   ++DDD+
Sbjct:   277 -WSDAKWLHSVQIKYARLTKSLEPGVIHSKASSLRDDDDD 315




GO:0003674 "molecular_function" evidence=ND
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0046890 "regulation of lipid biosynthetic process" evidence=IGI;IMP
GO:0010883 "regulation of lipid storage" evidence=IMP
GO:0046473 "phosphatidic acid metabolic process" evidence=IMP
GO:0042594 "response to starvation" evidence=IMP
GO:0090207 "regulation of triglyceride metabolic process" evidence=IMP
GO:0046339 "diacylglycerol metabolic process" evidence=IMP
RGD|1308135 Bscl2 "Berardinelli-Seip congenital lipodystrophy 2 (seipin)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96G97 BSCL2 "Seipin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1298392 Bscl2 "Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051113-140 bscl2 "Bernardinelli-Seip congenital lipodystrophy 2 (seipin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJD5 BSCL2 "Seipin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9P6 BSCL2 "Seipin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-130 zgc:110829 "zgc:110829" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LC49 BSCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F8W7Q8 BSCL2 "Seipin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V3X4BSCL2_DROMENo assigned EC number0.45860.82590.6540yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
pfam06775198 pfam06775, Seipin, Putative adipose-regulatory pro 1e-77
>gnl|CDD|219170 pfam06775, Seipin, Putative adipose-regulatory protein (Seipin) Back     alignment and domain information
 Score =  234 bits (598), Expect = 1e-77
 Identities = 96/205 (46%), Positives = 133/205 (64%), Gaps = 11/205 (5%)

Query: 41  SASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLM 100
              +LW+++F Y  FYY+Y+P +S  RP+H  +    E      +PTA+V L  R  LLM
Sbjct: 2   LLLLLWVAVFAYGLFYYSYVPTVSLERPLHFDYTTGCE------FPTANVSLDDR--LLM 53

Query: 101 VGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKT 160
            GQPY + + LE+PESP N++LGMFMV   L  ++G +I+ S R AML YRS L+ T  T
Sbjct: 54  PGQPYDVTVELELPESPQNLKLGMFMVRVSLLSRSGKVIASSSRPAMLKYRSPLVRTAST 113

Query: 161 LVQAPFLILGGYEEKQTLTLELFS--EYEEDQNHPVTDIYIEVQSRF-IHIYSASIHINA 217
           LV +P  +LG  EEKQTL +E+F   E+ ED   P T + +E+QSR  I IYSAS+ I+A
Sbjct: 114 LVFSPLYVLGYSEEKQTLRVEMFERVEFLEDSYSPTTSLRVEIQSRAGIQIYSASLTIHA 173

Query: 218 ALSGLRYVMFTWPLLSAVLGISSNL 242
            L+GLRY+M+ WP+ S ++GIS   
Sbjct: 174 KLTGLRYLMYNWPITSFLVGISMFW 198


Seipin is a protein of approximately 400 residues, in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in human, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V. Length = 198

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 293
PF06775199 Seipin: Putative adipose-regulatory protein (Seipi 100.0
KOG4200|consensus 398 100.0
KOG4200|consensus398 99.59
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene Back     alignment and domain information
Probab=100.00  E-value=3.2e-60  Score=421.41  Aligned_cols=195  Identities=46%  Similarity=0.820  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcceEEeEEEEeccCCCCCCcccCceEEEEeccccccccCCCeEEEEEEEEecCCccCc
Q psy17268         41 SASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNI  120 (293)
Q Consensus        41 ~~~ll~vSv~~Y~~FY~~yiP~~~~~~Pv~lqy~~~~~~~~~~s~P~A~v~L~~~~~~L~~~q~YdVsv~L~lPeS~~N~  120 (293)
                      +++++++|+++|++|||.|||++.+++||||||++|.+       |+|+++++++.+.+.+||+|||+|+|+||||++|+
T Consensus         2 ~~~ll~~s~~~y~~fy~~~vP~~~~~~pl~f~y~~~~~-------P~A~v~l~~~~~~l~~~q~Ydv~v~L~lP~S~~N~   74 (199)
T PF06775_consen    2 LILLLWLSVILYGLFYYSYVPTVSHSRPLHFDYTSGRN-------PYANVSLSNKARLLPPGQPYDVSVELELPESPYNR   74 (199)
T ss_pred             EEhHHHHHHHHHHhhheEEeccceEEEEEEEEecCCCC-------cEEEEEeccCccccCCCceEEEEEEEEeCCCCCcC
Confidence            35788999999999999999999999999999998743       99999999777889999999999999999999999


Q ss_pred             cCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcceEEEEEeccc--cccccCCCCceEEE
Q psy17268        121 ELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFS--EYEEDQNHPVTDIY  198 (293)
Q Consensus       121 ~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~q~l~V~l~e--~~~e~~~~p~~~~~  198 (293)
                      ++|||||+++++|.+|+++++++||||++|+|+++|++++++++|+|++|+.+|+|+++|+|++  ++.++.+.|+++++
T Consensus        75 ~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~S~~i~~~~~~~~~p~~l~G~~~e~q~l~V~l~~~~~~~~~~~~~~~~~~  154 (199)
T PF06775_consen   75 DLGMFMVSLELLSANGKVLASSSRPAMLPYRSPLIRLLRTLLFLPPYLLGWSEETQTLSVPLFERVEFREDSESPPTSAR  154 (199)
T ss_pred             CCCeEEEEEEEEcCCCcEEEEEecceecccCCHHHHHHHHHHHHHHhhEecccceEEEEEEeccccccccccCCCceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999  78889999999999


Q ss_pred             EEEeccc-eeEEEEEEEEEeccchhHHHHHHhhhHHHHHHHHHHH
Q psy17268        199 IEVQSRF-IHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNL  242 (293)
Q Consensus       199 vei~sr~-iqiY~A~L~~~a~l~GlR~lmy~~pi~S~~vgi~~~~  242 (293)
                      |++++|. +|||+|+|+++|+|+|+||+|||||++||++|+++||
T Consensus       155 v~i~~~~~~qiy~A~L~~~a~l~glr~~my~~pi~S~~v~~~~fw  199 (199)
T PF06775_consen  155 VEIQSRAILQIYSASLRFTARLPGLRYLMYNWPILSFFVGVSLFW  199 (199)
T ss_pred             EEEccCCCcEEEEEEEEEEEEChHHHHHHHhhhhhHheeeeeeeC
Confidence            9999998 9999999999999999999999999999999998776



This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].

>KOG4200|consensus Back     alignment and domain information
>KOG4200|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00