Psyllid ID: psy1726

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MDSHSAATLPSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYISQS
Secondary Structure (PSIPRED)
cccccccccccccEEccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHcccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHEHHEHHHHcEEEccc
Coil and Loop (DISEMBL)
mdshsaatlpsryvTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTelfeasdtrcsespiaaasgmfkpvdtctadcrqlNTQDYMDLLWTTlaefpgnyyVFIRNRATYISQS
Flexible Loop (DISEMBL)
mdshsaatlpsryvtSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYISQS
Low Complexity Region (SEG)
MDSHSAATLPSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYISQS
Disordered region (IsUnstruct)
************YVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYI***
Disordered Region (DISOPRED)
********************************LFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEAS***********************ADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYI***
Disordered Region (DISEMBL)
*********PSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYISQS
Disordered Region (DISPRO)
*********PSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDT*C****************TCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYIS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSHSAATLPSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRATYISQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q8BFT9	548	Synaptic vesicle 2-relate	yes	N/A	0.423	0.105	0.515	9e-12
Q1JP63	548	Synaptic vesicle 2-relate	yes	N/A	0.423	0.105	0.515	1e-11
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	N/A	0.423	0.105	0.515	1e-11
Q8N4V2	548	Synaptic vesicle 2-relate	yes	N/A	0.423	0.105	0.515	1e-11
Q5R5T8	548	Synaptic vesicle 2-relate	yes	N/A	0.423	0.105	0.515	1e-11
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	N/A	0.430	0.107	0.538	2e-11
P30638	520	Putative transporter ZK63	yes	N/A	0.423	0.111	0.462	9e-06

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
           AF YYG+VL+TTELF+A D       + + S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query: 116 LAEFPG 121
           L+EFPG
Sbjct: 381 LSEFPG 386

Mus musculus (taxid: 10090)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
           AF YYG+VL+TTELF+A D       + + S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query: 116 LAEFPG 121
           L+EFPG
Sbjct: 381 LSEFPG 386

Bos taurus (taxid: 9913)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
           AF YYG+VL+TTELF+A D       + + S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query: 116 LAEFPG 121
           L+EFPG
Sbjct: 381 LSEFPG 386

Rattus norvegicus (taxid: 10116)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
           AF YYG+VL+TTELF+A D       +   S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query: 116 LAEFPG 121
           L+EFPG
Sbjct: 381 LSEFPG 386

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
           AF YYG+VL+TTELF+A D       +   S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query: 116 LAEFPG 121
           L+EFPG
Sbjct: 381 LSEFPG 386

Pongo abelii (taxid: 9601)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 6/65 (9%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
           AF YYG+VL+TTELF+A D  CS   I+      KP   C+  C  L  +DY DLLWTTL
Sbjct: 328 AFSYYGLVLLTTELFQAGDV-CS---ISNQRKAVKP--KCSLACEYLTVEDYTDLLWTTL 381

Query: 117 AEFPG 121
           +EFPG
Sbjct: 382 SEFPG 386

Xenopus laevis (taxid: 8355)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 55  VCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWT 114
           + AF YYG+VL TT LF++ D  C         G+F    T    C+ L   DY DLL T
Sbjct: 328 ITAFSYYGMVLFTTVLFQSHD-ECH-------GGLFSN-GTQMEVCQPLTRSDYFDLLST 378

Query: 115 TLAEFPG 121
           TLAEFPG
Sbjct: 379 TLAEFPG 385

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
193617990	510	PREDICTED: synaptic vesicle 2-related pr	0.708	0.190	0.475	2e-16
357614380	430	putative sugar transporter [Danaus plexi	0.802	0.255	0.380	2e-13
242008957	507	sugar transporter, putative [Pediculus h	0.554	0.149	0.460	4e-13
443727495	539	hypothetical protein CAPTEDRAFT_220893 [	0.554	0.141	0.465	2e-12
340718001	517	PREDICTED: synaptic vesicle 2-related pr	0.416	0.110	0.594	6e-12
350400543	517	PREDICTED: synaptic vesicle 2-related pr	0.416	0.110	0.594	6e-12
383847537	516	PREDICTED: synaptic vesicle 2-related pr	0.430	0.114	0.597	8e-12
332028284	517	Synaptic vesicle 2-related protein [Acro	0.437	0.116	0.582	1e-11
322800858	302	hypothetical protein SINV_12690 [Solenop	0.437	0.198	0.582	1e-11
291231793	524	PREDICTED: synaptic vesicle 2-related pr	0.715	0.187	0.392	1e-11

>gi|193617990|ref|XP_001945003.1| PREDICTED: synaptic vesicle 2-related protein-like [Acyrthosiphon pisum]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 6/103 (5%)

Query: 31  KGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEAS--DTRCSESPIAAASG 88
           +G FT       R++  +  F   VCAFCYYG+VLM+T LFE+S  +  CS +     SG
Sbjct: 281 RGSFTDLLLPQLRVSSILLWFIWLVCAFCYYGIVLMSTGLFESSYNNRTCSAN---LDSG 337

Query: 89  MFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130
           +FK V +CTA+   L T+DY+DLLWTTLAEFPG +  +F+ +R
Sbjct: 338 IFKTVQSCTAESHYLTTRDYIDLLWTTLAEFPGIFATIFVIDR 380

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614380|gb|EHJ69047.1| putative sugar transporter [Danaus plexippus]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 32/142 (22%)

Query: 4   HSAATLPSRYVTSAHNMIRDLG-------------LSTGVKGLFTTFQSYPSRINKAVFL 50
           H A+  P + + +   + RD G             +  G +G        P   N ++ L
Sbjct: 177 HVASGQPDKALATLDQIARDNGRPMLLGRLVCDDSVGIGQRGRLKHLL-IPQLRNTSLLL 235

Query: 51  FHRTV-CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYM 109
           +   + CAFCYYG+VLMTTELFE   T   E P             C ADCR L T DYM
Sbjct: 236 WVIWMSCAFCYYGLVLMTTELFE---TDAGEEP-------------CAADCRPLQTTDYM 279

Query: 110 DLLWTTLAEFPGNYY-VFIRNR 130
           DLLWTTLAEFPG +  +FI  +
Sbjct: 280 DLLWTTLAEFPGIFATIFIIEK 301

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008957|ref|XP_002425260.1| sugar transporter, putative [Pediculus humanus corporis] gi|212509016|gb|EEB12522.1| sugar transporter, putative [Pediculus humanus corporis]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 13/89 (14%)

Query: 43  RINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQ 102
           R    +  F     AFCYYG+VLMTTELF+ S     +S            ++C ADC++
Sbjct: 302 RKTSILLWFIWLTSAFCYYGLVLMTTELFQGSQNSAKKS------------ESCAADCKE 349

Query: 103 LNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130
           L T DY+DLLWTTLAEFPG    +FI  R
Sbjct: 350 LTTTDYIDLLWTTLAEFPGILVTIFIIER 378

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443727495|gb|ELU14236.1| hypothetical protein CAPTEDRAFT_220893 [Capitella teleta]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 12/88 (13%)

Query: 43  RINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRC---SESPIAAASGMFKPVDTCTAD 99
           R+  ++  F     AFCYYG+VLMTTELFE  D  C   S   +  AS        C   
Sbjct: 320 RLTTSLLWFIWLANAFCYYGIVLMTTELFEVGD-ECHGGSAGKVVQAS--------CGVG 370

Query: 100 CRQLNTQDYMDLLWTTLAEFPGNYYVFI 127
           C+ L+T+DY+DLLWTTLAEFPG    F+
Sbjct: 371 CKTLSTKDYIDLLWTTLAEFPGLVITFL 398

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|340718001|ref|XP_003397461.1| PREDICTED: synaptic vesicle 2-related protein-like [Bombus terrestris]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 45/69 (65%), Gaps = 12/69 (17%)

Query: 57  AFCYYGVVLMTTELFEASDTRCS--ESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWT 114
           AFCYYGVVLMTTELF  S  +CS  E+         K  DTC  DCR L   DY+DLLWT
Sbjct: 320 AFCYYGVVLMTTELFHTSSEQCSLWEN---------KKEDTCQLDCR-LERSDYIDLLWT 369

Query: 115 TLAEFPGNY 123
           TLAEFPG +
Sbjct: 370 TLAEFPGIF 378

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400543|ref|XP_003485871.1| PREDICTED: synaptic vesicle 2-related protein-like [Bombus impatiens]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 45/69 (65%), Gaps = 12/69 (17%)

Query: 57  AFCYYGVVLMTTELFEASDTRCS--ESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWT 114
           AFCYYGVVLMTTELF  S  +CS  E+         K  DTC  DCR L   DY+DLLWT
Sbjct: 320 AFCYYGVVLMTTELFHTSSEQCSLWEN---------KKEDTCQLDCR-LERSDYIDLLWT 369

Query: 115 TLAEFPGNY 123
           TLAEFPG +
Sbjct: 370 TLAEFPGIF 378

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847537|ref|XP_003699409.1| PREDICTED: synaptic vesicle 2-related protein-like [Megachile rotundata]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 43/67 (64%), Gaps = 8/67 (11%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
           AFCYYGVVLMTTELF  S  +CS       S   K  DTC  DC  L   DY+DLLWTTL
Sbjct: 319 AFCYYGVVLMTTELFHTSSEQCS-------SWENKKEDTCQLDC-SLERSDYIDLLWTTL 370

Query: 117 AEFPGNY 123
           AEFPG +
Sbjct: 371 AEFPGIF 377

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028284|gb|EGI68331.1| Synaptic vesicle 2-related protein [Acromyrmex echinatior]

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
           AFCYYGVVLMTTELF  S  +CS    +   G      TC  DCR L   DY+DLLWTTL
Sbjct: 319 AFCYYGVVLMTTELFHTSSEQCSTWSTSNNEG------TCQLDCR-LRRSDYIDLLWTTL 371

Query: 117 AEFPGNY 123
           AEFPG +
Sbjct: 372 AEFPGIF 378

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800858|gb|EFZ21708.1| hypothetical protein SINV_12690 [Solenopsis invicta]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 57  AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
           AFCYYGVVLMTTELF  S  +CS         M    DTC  DC+ L   DY+DLLWTTL
Sbjct: 116 AFCYYGVVLMTTELFHTSSEQCS------TWNMNSDEDTCQLDCK-LRRSDYIDLLWTTL 168

Query: 117 AEFPGNY 123
           AEFPG +
Sbjct: 169 AEFPGIF 175

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291231793|ref|XP_002735848.1| PREDICTED: synaptic vesicle 2-related protein-like [Saccoglossus kowalevskii]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 9/107 (8%)

Query: 20  MIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCS 79
           +IRD    T  +G F+       R+   V +F     AF YYG+VLMTTELF++  +  +
Sbjct: 282 VIRD---KTEKRGKFSDLFVPQLRMTTIVLMFIWFANAFSYYGIVLMTTELFQSGSSSTN 338

Query: 80  ESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVF 126
            +  A +       + C  DCR L+T+DY+DLLWT++AEFPG    F
Sbjct: 339 AANTAGSP------EICYTDCRGLSTKDYVDLLWTSIAEFPGLVITF 379

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.423	0.120	0.545	1.5e-11
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.423	0.105	0.545	1.8e-11
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.423	0.106	0.545	2.3e-11
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.423	0.105	0.545	2.3e-11
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.423	0.105	0.545	2.3e-11
MGI|MGI:1915916	548	Svop "SV2 related protein" [Mu	0.423	0.105	0.545	2.3e-11
RGD|620277	548	Svop "SV2 related protein" [Ra	0.423	0.105	0.545	2.3e-11
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.423	0.105	0.545	2.3e-11
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.423	0.105	0.545	2.3e-11
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.423	0.105	0.515	4.9e-11

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   263 AFSYYGLVLLTTELFQAGDV-CS------ISSQKKAVEAKCSLACEYLSEEDYMDLLWTT 315

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   316 LSEFPG 321

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSQKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   327 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 379

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   380 LSEFPG 385

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D  CS       S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGDV-CS------ISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 34/66 (51%), Positives = 43/66 (65%)

Query:    57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
             AF YYG+VL+TTELF+A D       +   S   K V+  C+  C  L+ +DYMDLLWTT
Sbjct:   328 AFSYYGLVLLTTELFQAGD-------VCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380

Query:   116 LAEFPG 121
             L+EFPG
Sbjct:   381 LSEFPG 386

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N4V2	SVOP_HUMAN	No assigned EC number	0.5151	0.4233	0.1058	yes	N/A
Q9Z2I7	SVOP_RAT	No assigned EC number	0.5151	0.4233	0.1058	yes	N/A
Q1JP63	SVOP_BOVIN	No assigned EC number	0.5151	0.4233	0.1058	yes	N/A
Q8BFT9	SVOP_MOUSE	No assigned EC number	0.5151	0.4233	0.1058	yes	N/A
Q5R5T8	SVOP_PONAB	No assigned EC number	0.5151	0.4233	0.1058	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG0253|consensus	528		99.66
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.14
TIGR00898	505	2A0119 cation transport protein.	98.24
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.0
KOG0255|consensus	521		97.67
PRK10642	490	proline/glycine betaine transporter; Provisional	97.27
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.54
KOG0569|consensus	485		96.47
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.43
KOG0254|consensus	513		96.41
PRK12307	426	putative sialic acid transporter; Provisional	96.3
TIGR00895	398	2A0115 benzoate transport.	96.24
PRK15075	434	citrate-proton symporter; Provisional	96.15
TIGR00901	356	2A0125 AmpG-related permease.	95.94
PLN00028	476	nitrate transmembrane transporter; Provisional	95.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.55
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	95.36
PRK09952	438	shikimate transporter; Provisional	95.34
PRK10504	471	putative transporter; Provisional	95.33
PRK03893	496	putative sialic acid transporter; Provisional	95.27
PRK03699	394	putative transporter; Provisional	95.24
PRK09705	393	cynX putative cyanate transporter; Provisional	95.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.17
KOG0252|consensus	538		95.09
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.06
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.04
PRK11663	434	regulatory protein UhpC; Provisional	94.99
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	94.8
PRK12307	426	putative sialic acid transporter; Provisional	94.5
TIGR00893	399	2A0114 d-galactonate transporter.	94.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.41
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	94.38
TIGR00895	398	2A0115 benzoate transport.	94.3
PRK03699	394	putative transporter; Provisional	94.2
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.86
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	93.84
TIGR00891	405	2A0112 putative sialic acid transporter.	93.84
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.74
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.67
PLN00028	476	nitrate transmembrane transporter; Provisional	93.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	93.54
PRK10054	395	putative transporter; Provisional	93.54
TIGR00891	405	2A0112 putative sialic acid transporter.	93.47
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	93.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	92.84
TIGR00897	402	2A0118 polyol permease family. This family of prot	92.72
PRK03633	381	putative MFS family transporter protein; Provision	92.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	92.33
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.23
PRK09528	420	lacY galactoside permease; Reviewed	92.13
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	91.61
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	91.54
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	91.31
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	91.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	90.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	90.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	90.48
PRK09874	408	drug efflux system protein MdtG; Provisional	90.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	90.19
PRK11663	434	regulatory protein UhpC; Provisional	90.07
PRK15075	434	citrate-proton symporter; Provisional	90.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	89.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	89.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	89.7
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	89.54
PF13347	428	MFS_2: MFS/sugar transport protein	89.47
PRK05122	399	major facilitator superfamily transporter; Provisi	89.45
PRK03545	390	putative arabinose transporter; Provisional	89.03
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	88.87
PRK03893	496	putative sialic acid transporter; Provisional	88.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	88.8
PRK10133	438	L-fucose transporter; Provisional	88.61
PRK03633	381	putative MFS family transporter protein; Provision	88.43
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	88.39
PRK11010	491	ampG muropeptide transporter; Validated	87.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	87.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	86.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	86.26
PRK09584	500	tppB putative tripeptide transporter permease; Rev	86.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	85.78
PRK15011	393	sugar efflux transporter B; Provisional	85.22
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	85.13
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	85.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	84.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	84.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	84.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	84.11
PRK10091	382	MFS transport protein AraJ; Provisional	83.81
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	83.3
TIGR00900	365	2A0121 H+ Antiporter protein.	83.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	83.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	83.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	82.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	82.76
TIGR00893	399	2A0114 d-galactonate transporter.	82.76
PRK11902	402	ampG muropeptide transporter; Reviewed	82.49
PRK11195	393	lysophospholipid transporter LplT; Provisional	82.42
PRK09952	438	shikimate transporter; Provisional	82.32
PRK12382	392	putative transporter; Provisional	82.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	82.05
PRK10489	417	enterobactin exporter EntS; Provisional	81.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	81.58
TIGR00900	365	2A0121 H+ Antiporter protein.	81.49
PRK14995	495	methyl viologen resistance protein SmvA; Provision	80.99
PRK10133	438	L-fucose transporter; Provisional	80.87
PRK03545	390	putative arabinose transporter; Provisional	80.86
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	80.64
KOG2533|consensus	495		80.21

>KOG0253|consensus

Probab=99.66  E-value=2.2e-16  Score=134.40  Aligned_cols=102  Identities=33%  Similarity=0.426  Sum_probs=83.3

Q ss_pred             ccccccccchhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccc
Q psy1726          21 IRDLGLSTGVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTAD   99 (137)
Q Consensus        21 ~~~~~~~~~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (137)
                      .+++|   ++.+|+     +|.+||+|+++| +||+..|.|||+++...++++..+.|.-.+    +.  .....+|..+
T Consensus       310 ke~rg---~~~nLl-----sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~----r~--~p~e~e~~~~  375 (528)
T KOG0253|consen  310 KEVRG---GTTNLL-----SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYN----RF--LPTELETRAN  375 (528)
T ss_pred             ccccc---chHhhc-----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccch----hc--chhHHHhhhc
Confidence            34466   789999     999999999999 999999999999999999998776553211    10  0122235556


Q ss_pred             cccCChhhHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         100 CRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       100 c~~l~~~~y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      |+.+...+|++.++++++|+||.++ ++++||+|||..
T Consensus       376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT  413 (528)
T KOG0253|consen  376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT  413 (528)
T ss_pred             CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence            8888889999999999999999999 999999999963

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.14  E-value=1.4e-10  Score=105.42  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=39.1

Q ss_pred             cccchhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726          26 LSTGVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEA   73 (137)
Q Consensus        26 ~~~~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~   73 (137)
                      .|.++++||     +++++++|+++| +||+..++|||+.+|+|+++..
T Consensus       431 ~~~~~~~lf-----~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       431 IWGNFLRCF-----NPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             HHHHHHHHc-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344688899     999999999999 9999999999999999999755

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00898 2A0119 cation transport protein

Probab=98.24  E-value=3e-06  Score=71.71  Aligned_cols=70  Identities=27%  Similarity=0.431  Sum_probs=61.4

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      +++++|+    +|.+++.++.++ .|++..+.||++.+|.|.+                                 ..+.
T Consensus       315 ~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~  357 (505)
T TIGR00898       315 SFLDLFR----TPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL---------------------------------GGNI  357 (505)
T ss_pred             cHHHHhC----ChHHHHHHHHHHHHHHHHHHHHHHHhcccccc---------------------------------CCCh
Confidence            6788997    889999999999 9999999999999998842                                 2345


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      |...++.+++++||.++ .+++||+|||.
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~  386 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRRY  386 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            88888999999999999 99999999986

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.00  E-value=1.8e-05  Score=67.65  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      .++++|+... .++++++++.++ .|++..+.|||+..|.|.++...+......          . ..+.   .++-...
T Consensus       273 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~----------~-~~~~---~~~~~~~  337 (502)
T TIGR00887       273 SWSDFFTHFF-KWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAA----------T-NNAY---EELYKTA  337 (502)
T ss_pred             hHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCcc----------c-hhHH---HHHHHHH
Confidence            4677773100 123445667777 899989999999999999997654321000          0 0000   0000112


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ....++..++.+||.++ .+++||+|||+.
T Consensus       338 ~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~  367 (502)
T TIGR00887       338 VGNLIIALAGTVPGYWVTVFLVDIIGRKPI  367 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence            33455667789999999 999999999973

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0255|consensus

Probab=97.67  E-value=0.00016  Score=61.96  Aligned_cols=71  Identities=20%  Similarity=0.352  Sum_probs=62.7

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      .+.++|+    .|+++++++.++ .|+...++|||+.+....                                 ++.+.
T Consensus       310 ~~~~l~~----~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~---------------------------------lg~~~  352 (521)
T KOG0255|consen  310 SFLDLFR----TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG---------------------------------LGGNI  352 (521)
T ss_pred             chhhhhc----CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh---------------------------------cCchH
Confidence            4788896    777999999999 999999999999987763                                 56778


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      |...++.++.|+|+... .+.+|++|||..
T Consensus       353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~  382 (521)
T KOG0255|consen  353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPP  382 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCcHHH
Confidence            99999999999999999 999999999863

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.27  E-value=0.0013  Score=56.23  Aligned_cols=75  Identities=5%  Similarity=0.001  Sum_probs=53.1

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQ  106 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~  106 (137)
                      .++++|     ++ +++.+++.+ .++...+.||++..|+|.++... +.                          ....
T Consensus       240 ~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--------------------------s~~~  287 (490)
T PRK10642        240 SFKEIA-----TK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHY--------------------------SEDH  287 (490)
T ss_pred             CHHHHH-----HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHH
Confidence            466777     44 445566666 77778899999999999988543 21                          0111


Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         107 DYMDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       107 ~y~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ......+..++.++|.++ +++.||+|||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  317 (490)
T PRK10642        288 GVLIIIAIMIGMLFVQPVMGLLSDRFGRRP  317 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            233445567888889989 99999999996

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.54  E-value=0.017  Score=48.32  Aligned_cols=74  Identities=7%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      +++++|     +  .++..++++ .++...+++|++..|+|.++.+...                          .+...
T Consensus       234 ~~~~l~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g--------------------------~s~~~  280 (432)
T PRK10406        234 SLKGLW-----R--NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG--------------------------MHANV  280 (432)
T ss_pred             cHHHHH-----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CCHHH
Confidence            567778     3  333444444 4555578899999999998864311                          11111


Q ss_pred             H-HHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         108 Y-MDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       108 y-~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      . ....+..++.+++..+ +.+.||+|||+
T Consensus       281 ~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~  310 (432)
T PRK10406        281 ASGIMTAALFVFMLIQPLIGALSDKIGRRT  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            1 1222334445566667 99999999985

>KOG0569|consensus

Probab=96.47  E-value=0.0089  Score=52.61  Aligned_cols=78  Identities=9%  Similarity=0.065  Sum_probs=57.5

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHh-hhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTV-CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ  106 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~-~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~  106 (137)
                      ++.++++    ++.+|+..++.+ +-++ ..-+-+.+..+..++|...+..                         ...+
T Consensus       257 sl~~~~~----~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-------------------------~~~a  307 (485)
T KOG0569|consen  257 SLRQLLK----NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-------------------------PEEA  307 (485)
T ss_pred             cHHHHhc----CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-------------------------HHHH
Confidence            6889997    888888877766 5555 4445577777888888766541                         1223


Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         107 DYMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       107 ~y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                       -...+.+++..++..++ .+++||+|||+.
T Consensus       308 -~~an~~~g~v~~~~t~~~~~lid~~gRRpL  337 (485)
T KOG0569|consen  308 -QYANLGIGIVNLLSTLVSPFLIDRLGRRPL  337 (485)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence             44556778999999999 999999999973

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.43  E-value=0.016  Score=47.30  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHH
Q psy1726          40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAE  118 (137)
Q Consensus        40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~e  118 (137)
                      +....++...++ .++.....+|++..|+|.++...+.               +           ....-....+.++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---------------s-----------~~~~~~~~~~~~~~~  268 (406)
T PRK11551        215 GEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGL---------------S-----------RSQAGLVQIAFNIGG  268 (406)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------C-----------hhhhhHHHHHHHHHH
Confidence            444445566677 7777788889999999998864321               0           111123345567889


Q ss_pred             HHHHHH-HHHHHHhcCCC
Q psy1726         119 FPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       119 ipG~il-~llidriGRK~  135 (137)
                      ++|.++ ..+.||+|||+
T Consensus       269 ~~~~~~~g~l~dr~g~~~  286 (406)
T PRK11551        269 ALGSLLIGALMDRLRPRR  286 (406)
T ss_pred             HHHHHHHHHHHHHHhHHH
Confidence            999999 99999999975

>KOG0254|consensus

Probab=96.41  E-value=0.0045  Score=53.40  Aligned_cols=75  Identities=12%  Similarity=0.168  Sum_probs=58.7

Q ss_pred             hhhhccccccchhHHHHHHHHH--HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          30 VKGLFTTFQSYPSRINKAVFLF--HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        30 i~~LF~~~~~~~~~r~~Tl~l~--iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      ..+++     .|..++++++..  ..|....+++.+..+.+++|+..+..                          ++. 
T Consensus       284 ~~~l~-----~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~--------------------------~~~-  331 (513)
T KOG0254|consen  284 WGELF-----SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLK--------------------------SDT-  331 (513)
T ss_pred             HHHhc-----CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCC--------------------------Cch-
Confidence            66788     677888777644  56667788888999999998765430                          111 


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      +...++.++..+.+.++ .+++||+|||+.
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l  361 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKL  361 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            77888999999999999 999999999973

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.30  E-value=0.02  Score=47.07  Aligned_cols=76  Identities=11%  Similarity=0.055  Sum_probs=48.7

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      +.+++|     +.+..+..+.+. ..+.....++++..|+|.++...+.               +           ....
T Consensus       220 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~-----------~~~~  268 (426)
T PRK12307        220 SMKGLF-----NRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF---------------D-----------TGVV  268 (426)
T ss_pred             HHHHHH-----hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHH
Confidence            456777     444444444444 5555555667788899988764321               0           1111


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      -....+.+++.++|.++ ..+.||+|||+
T Consensus       269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        269 SNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            22345567889999999 99999999985

>TIGR00895 2A0115 benzoate transport

Probab=96.24  E-value=0.033  Score=44.40  Aligned_cols=69  Identities=9%  Similarity=-0.042  Sum_probs=49.2

Q ss_pred             chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHH
Q psy1726          40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAE  118 (137)
Q Consensus        40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~e  118 (137)
                      +++..++++.++ ..+...+.++++..|+|.+....+.               +           ....-....+.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~-----------~~~~~~~~~~~~~~~  298 (398)
T TIGR00895       245 QGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF---------------S-----------LSLAATGGALFNFGG  298 (398)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHHHHHHHHHHHHH
Confidence            556666777777 7888888999999999965543222               0           111123345667888


Q ss_pred             HHHHHH-HHHHHHhcCC
Q psy1726         119 FPGNYY-VFIRNRATYI  134 (137)
Q Consensus       119 ipG~il-~llidriGRK  134 (137)
                      ++|.++ ..+.||+|||
T Consensus       299 ~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       299 VIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHhhcchH
Confidence            999999 9999999997

>PRK15075 citrate-proton symporter; Provisional

Probab=96.15  E-value=0.033  Score=46.57  Aligned_cols=64  Identities=8%  Similarity=0.025  Sum_probs=44.9

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY  123 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i  123 (137)
                      ..+..+ ..+.....++++..|.|.+++.. +.                         + ........++.+++.++|.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------~-~~~~~~~~~~~~~~~~~~~~  292 (434)
T PRK15075        239 IVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL-------------------------S-AADSLLVTLCVGVSNFIWLP  292 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------C-HHHHHHHHHHHHHHHHHHHH
Confidence            333434 55566778999999999988653 21                         0 11223445567788899999


Q ss_pred             H-HHHHHHhcCCC
Q psy1726         124 Y-VFIRNRATYIS  135 (137)
Q Consensus       124 l-~llidriGRK~  135 (137)
                      + +++.||+|||+
T Consensus       293 ~~g~l~Dr~g~r~  305 (434)
T PRK15075        293 IGGALSDRIGRRP  305 (434)
T ss_pred             HHHHHHHHhcchH
Confidence            9 99999999986

>TIGR00901 2A0125 AmpG-related permease

Probab=95.94  E-value=0.019  Score=46.22  Aligned_cols=63  Identities=11%  Similarity=0.107  Sum_probs=42.6

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH--HHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY--MDLLWTTLAEFPGN  122 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y--~~~~i~~l~eipG~  122 (137)
                      +.+.+. ..+...++++++..|+|.++...+.                           +...+  ...+...++.+.|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---------------------------~~~~~g~~~~~~~~~~~~~g~  262 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLDMGF---------------------------SKEEIALVAKINGLLGAILGG  262 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------CHHHHHHHhHHHHHHHHHHHH
Confidence            344445 5666788889999999988765321                           22222  23333446788999


Q ss_pred             HH-HHHHHHhcCCC
Q psy1726         123 YY-VFIRNRATYIS  135 (137)
Q Consensus       123 il-~llidriGRK~  135 (137)
                      ++ ..+.||+|||+
T Consensus       263 ~~~g~l~~r~g~~~  276 (356)
T TIGR00901       263 LIGGIIMQPLNILY  276 (356)
T ss_pred             HHHHHHHhhhhHHH
Confidence            99 99999999874

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.75  E-value=0.059  Score=46.09  Aligned_cols=69  Identities=3%  Similarity=-0.091  Sum_probs=46.7

Q ss_pred             chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHH
Q psy1726          40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLA  117 (137)
Q Consensus        40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~  117 (137)
                      +++.++.....| .++...+..++...++|.+.+..+.                           +...+ ....+..++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl---------------------------s~~~~g~~~~~~~~~   83 (476)
T PLN00028         31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL---------------------------TKSDIGNAGIASVSG   83 (476)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHH
Confidence            445566777777 7777777777777777777654332                           11211 223445667


Q ss_pred             HHHHHHH-HHHHHHhcCCC
Q psy1726         118 EFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       118 eipG~il-~llidriGRK~  135 (137)
                      .++|.++ +++.||+|||+
T Consensus        84 ~~~~~~~~G~l~dr~G~r~  102 (476)
T PLN00028         84 SIFSRLAMGPVCDLYGPRY  102 (476)
T ss_pred             HHHHHHHHHHHHHHhCChH
Confidence            8888889 99999999986

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.55  E-value=0.00039  Score=57.79  Aligned_cols=76  Identities=14%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHH-HHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFC-YYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ  106 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~-YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~  106 (137)
                      .++++|+    .+.+++++++.+ +++...+. ++.+..+.|.+++..+.                           +.+
T Consensus       240 ~~~~l~~----~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~---------------------------~~~  288 (451)
T PF00083_consen  240 SWRDLFR----NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI---------------------------SNS  288 (451)
T ss_pred             eeeeccc----ccccccccccccccccccccccccccccccccccccccc---------------------------ccc
Confidence            4677885    556677877777 66555444 45566667776654332                           122


Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         107 DYMDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       107 ~y~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                       +...++.++..+++.++ .+++||+|||+.
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~  318 (451)
T PF00083_consen  289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKL  318 (451)
T ss_pred             -cccccccccccccccccccccccccccccc
Confidence             56667778999999999 999999999964

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.40  E-value=0.068  Score=43.39  Aligned_cols=66  Identities=8%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726          44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN  122 (137)
Q Consensus        44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~  122 (137)
                      ++..+.++ .++.....++.+..+.|.+++..+..                         . ........+..++.++|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------------~-~~~~~~~~~~~~~~~~~~  336 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVS-------------------------T-DHAFLVSIIVGAVNFAFT  336 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCC-------------------------c-hHHHHHHHHHHHHHHHHH
Confidence            33344444 56666666777888889877654320                         1 222455667788889999


Q ss_pred             HH-HHHHHHhcCCC
Q psy1726         123 YY-VFIRNRATYIS  135 (137)
Q Consensus       123 il-~llidriGRK~  135 (137)
                      ++ .++.||+|||+
T Consensus       337 ~~~g~l~d~~~~~~  350 (481)
T TIGR00879       337 FVAIFLVDRFGRRP  350 (481)
T ss_pred             HHHHHHHHHhcchH
Confidence            99 99999999986

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=95.36  E-value=0.078  Score=44.08  Aligned_cols=68  Identities=9%  Similarity=-0.059  Sum_probs=45.1

Q ss_pred             chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD  107 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~  107 (137)
                      +++++|     +.   +..+.++ .+++....+|++..|+|++++..+.                           +.. 
T Consensus       184 ~~~~ll-----~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~---------------------------s~~-  227 (368)
T TIGR00903       184 EFGALA-----GR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAGL---------------------------EDI-  227 (368)
T ss_pred             HHHHHH-----cC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------ChH-
Confidence            456677     32   3346666 8999999999999999999964322                           111 


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYI  134 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK  134 (137)
                        ......+..+.|.+. .++.||+.||
T Consensus       228 --~~~~~~l~~~~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       228 --AGDAVALAILAGLIGVAVIPDRVARA  253 (368)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhHHhhhh
Confidence              233345555566666 8888888765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09952 shikimate transporter; Provisional

Probab=95.34  E-value=0.1  Score=43.93  Aligned_cols=65  Identities=9%  Similarity=-0.074  Sum_probs=43.3

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHHHHHHH
Q psy1726          45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLAEFPGN  122 (137)
Q Consensus        45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~eipG~  122 (137)
                      +..+.+. .+++..+++|++..|.|..+.+...                          .+.... ....+.++..+.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g--------------------------~s~~~~~~~~~~~g~~~~i~~  303 (438)
T PRK09952        250 GAFLKIIALRLCELLTMYIVTAFALNYSTQNLG--------------------------LPRELFLNIGLLVGGLSCLTI  303 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CCHHHHHHHHHHHHHHHHHHH
Confidence            3344455 6777788999999999987754211                          112211 22334566677788


Q ss_pred             HH-HHHHHHhcCCC
Q psy1726         123 YY-VFIRNRATYIS  135 (137)
Q Consensus       123 il-~llidriGRK~  135 (137)
                      ++ +++.||+|||+
T Consensus       304 ~~~g~l~Dr~grr~  317 (438)
T PRK09952        304 PCFAWLADRFGRRR  317 (438)
T ss_pred             HHHHHHHHHhCchH
Confidence            88 99999999986

>PRK10504 putative transporter; Provisional

Probab=95.33  E-value=0.09  Score=44.06  Aligned_cols=67  Identities=7%  Similarity=-0.152  Sum_probs=47.1

Q ss_pred             hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHHHH
Q psy1726          42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLAEF  119 (137)
Q Consensus        42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~ei  119 (137)
                      +.+++.+.++ ..|...+.++.+..++|.+.+..+.                           +.... +......++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---------------------------s~~~~~~~~~~~~~~~~   59 (471)
T PRK10504          7 SVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE---------------------------SPLHMHMVIVSYVLTVA   59 (471)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---------------------------CHHHHHHHHHHHHHHHH
Confidence            4466677777 8888888999999999998765332                           11211 22233456667


Q ss_pred             HHHHH-HHHHHHhcCCC
Q psy1726         120 PGNYY-VFIRNRATYIS  135 (137)
Q Consensus       120 pG~il-~llidriGRK~  135 (137)
                      .+.++ +.+.||+|||+
T Consensus        60 ~~~~~~g~l~d~~g~r~   76 (471)
T PRK10504         60 VMLPASGWLADRVGVRN   76 (471)
T ss_pred             HHHHHHHHHHHHhchHH
Confidence            77888 99999999986

>PRK03893 putative sialic acid transporter; Provisional

Probab=95.27  E-value=0.11  Score=43.60  Aligned_cols=69  Identities=10%  Similarity=-0.022  Sum_probs=47.5

Q ss_pred             chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHH
Q psy1726          40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLA  117 (137)
Q Consensus        40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~  117 (137)
                      ++.+++....++ .++...+.++.+...+|.+.+..+.                           +.. .-.......++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------------------s~~~~~~~~~~~~~~   67 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL---------------------------TTVQAASLISAAFIS   67 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHH
Confidence            455556666777 7888888888888888877654322                           111 12233345677


Q ss_pred             HHHHHHH-HHHHHHhcCCC
Q psy1726         118 EFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       118 eipG~il-~llidriGRK~  135 (137)
                      .+++.++ +.+.||+|||+
T Consensus        68 ~~~~~~~~g~l~dr~g~r~   86 (496)
T PRK03893         68 RWFGGLLLGAMGDRYGRRL   86 (496)
T ss_pred             HHHHHHHHHHHHHHhCcHH
Confidence            7888888 99999999996

>PRK03699 putative transporter; Provisional

Probab=95.24  E-value=0.091  Score=43.22  Aligned_cols=68  Identities=12%  Similarity=-0.002  Sum_probs=45.8

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP  120 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eip  120 (137)
                      ++++...+. .+++..+.++++..|+|.+++.. +..                         .....+ ...+..++.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s-------------------------~~~~~~-~~~~~~~~~~i  256 (394)
T PRK03699        203 WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMS-------------------------LEDAGN-LVSNFWMAYMV  256 (394)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------------------hHHhhH-HHHHHHHHHHH
Confidence            344555666 77888888999999999988543 210                         011112 12244567888


Q ss_pred             HHHH-HHHHHHhcCCCC
Q psy1726         121 GNYY-VFIRNRATYISQ  136 (137)
Q Consensus       121 G~il-~llidriGRK~~  136 (137)
                      |.++ ..+.||+|||+.
T Consensus       257 g~~~~g~l~dr~~~~~~  273 (394)
T PRK03699        257 GMWIFSFIVRFFDLQRI  273 (394)
T ss_pred             HHHHHHHHHHHhchhhH
Confidence            9999 999999999863

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.22  E-value=0.088  Score=43.55  Aligned_cols=62  Identities=10%  Similarity=-0.059  Sum_probs=44.1

Q ss_pred             HHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-H
Q psy1726          48 VFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-V  125 (137)
Q Consensus        48 l~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~  125 (137)
                      ..+. ..+...++|+++..|+|.++.+.+..                         .... -....+.+++.+.|.++ .
T Consensus       208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s-------------------------~~~a-g~~~~~~~i~~i~g~~~~g  261 (393)
T PRK09705        208 WTLGVYFGLINGGYASLIAWLPAFYIEIGAS-------------------------AQYS-GSLLALMTLGQAAGALLMP  261 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------------------hhhh-hHHHHHHHHHHHHHHHHHH
Confidence            3444 55566788999999999998753320                         1111 22345677899999999 9


Q ss_pred             HHHHHhcCCC
Q psy1726         126 FIRNRATYIS  135 (137)
Q Consensus       126 llidriGRK~  135 (137)
                      .+.||+|||+
T Consensus       262 ~l~~r~~~~~  271 (393)
T PRK09705        262 AMARHQDRRK  271 (393)
T ss_pred             HHHhhccchH
Confidence            9999999985

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.17  E-value=0.14  Score=43.33  Aligned_cols=61  Identities=7%  Similarity=-0.005  Sum_probs=42.4

Q ss_pred             HHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH-H
Q psy1726          49 FLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY-V  125 (137)
Q Consensus        49 ~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il-~  125 (137)
                      .++ ..++....++++..|+|.++...-.                          .+ ...-....+..++.++|.++ +
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g--------------------------~s~~~a~~~~~~~~~~~~ig~~~~G  315 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELG--------------------------FSKEDAINTFTLFEIGALVGSLLWG  315 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 5666777788999999988854211                          11 11123345567788999999 9


Q ss_pred             HHHHHhcCCC
Q psy1726         126 FIRNRATYIS  135 (137)
Q Consensus       126 llidriGRK~  135 (137)
                      ++.||+|||+
T Consensus       316 ~lsDr~g~r~  325 (467)
T PRK09556        316 WLSDLANGRR  325 (467)
T ss_pred             HHHHHHCCCc
Confidence            9999999986

>KOG0252|consensus

Probab=95.09  E-value=0.0068  Score=53.56  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             hhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH
Q psy1726          30 VKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY  108 (137)
Q Consensus        30 i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y  108 (137)
                      +..+|     ...+-++.+-.+ .||..-+.+|+..++...|+...+..-+.           . +.     +++=....
T Consensus       294 F~~~f-----~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~-----------~-~~-----~~~~~vA~  351 (538)
T KOG0252|consen  294 FSRLF-----LRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSA-----------N-TY-----HELFKVAE  351 (538)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCc-----------c-hH-----HHHHHHHH
Confidence            44555     333556777778 99999999999999999999866541100           0 00     01111236


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       109 ~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      .+.++...+.+||+-+ ..++|++|||..
T Consensus       352 ~~~iia~~~~vPGyw~tv~~id~iGRk~i  380 (538)
T KOG0252|consen  352 GNLIIAVCSTVPGYWFTVYFIDIIGRKYI  380 (538)
T ss_pred             HHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence            7788999999999999 999999999964

>TIGR00897 2A0118 polyol permease family

Probab=95.06  E-value=0.14  Score=42.34  Aligned_cols=59  Identities=5%  Similarity=0.012  Sum_probs=40.7

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      ..++..++++++..|+|.+++..+.                         +.... .....+..++.++|.++ +.+.||
T Consensus       230 ~~~~~~~~~~~~~~~~p~~~~~~g~-------------------------s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr  283 (402)
T TIGR00897       230 VRIINTIGLFGFAVFLPMFVAELGF-------------------------STSEW-LQIWGTFFFTNIVFNVIFGIVGDK  283 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-------------------------ChhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5556677889999999987754322                         01111 22334566888999999 999999


Q ss_pred             hcCCCC
Q psy1726         131 ATYISQ  136 (137)
Q Consensus       131 iGRK~~  136 (137)
                      +|||+.
T Consensus       284 ~~~~~~  289 (402)
T TIGR00897       284 LGWMNT  289 (402)
T ss_pred             hcchhH
Confidence            998863

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.04  E-value=0.084  Score=46.41  Aligned_cols=69  Identities=9%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHH
Q psy1726          42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEF  119 (137)
Q Consensus        42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~ei  119 (137)
                      +..+....++ .-+...++|||+..++|..+.+. +.                          .............+...
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--------------------------s~~~a~~i~~~~~~~~~   59 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKY--------------------------DDNHAYELFSAYCSLVY   59 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHH
Confidence            3445555556 66677889999999999888653 11                          01122333444456667


Q ss_pred             HHHHH-HHHHHHh-cCCCC
Q psy1726         120 PGNYY-VFIRNRA-TYISQ  136 (137)
Q Consensus       120 pG~il-~llidri-GRK~~  136 (137)
                      ++.++ +++.||+ |||+.
T Consensus        60 l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462         60 VTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             HHHHHHHHHHHHccCcHHH
Confidence            78888 9999999 99863

>PRK11663 regulatory protein UhpC; Provisional

Probab=94.99  E-value=0.14  Score=42.86  Aligned_cols=70  Identities=6%  Similarity=-0.038  Sum_probs=44.8

Q ss_pred             chhHHHHHHHH-H-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHH
Q psy1726          40 YPSRINKAVFL-F-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTL  116 (137)
Q Consensus        40 ~~~~r~~Tl~l-~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l  116 (137)
                      .+.+++..+.+ + .|+...+.-+.+..++|.+.+..+.                           +. ..-+...+..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------------------s~~~~g~~~~~~~~   69 (434)
T PRK11663         17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL---------------------------SRSDIGLLATLFYI   69 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC---------------------------CHHHHHHHHHHHHH
Confidence            44555554433 3 5666666556777888988764332                           11 11223345667


Q ss_pred             HHHHHHHH-HHHHHHhcCCCC
Q psy1726         117 AEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       117 ~eipG~il-~llidriGRK~~  136 (137)
                      +..++.++ +.+.||+|||+.
T Consensus        70 ~~~~~~~~~G~l~dr~g~r~~   90 (434)
T PRK11663         70 TYGVSKFVSGIVSDRSNARYF   90 (434)
T ss_pred             HHHHHHhhhhHHHhhcCCchh
Confidence            78888888 999999999974

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=94.80  E-value=0.14  Score=42.82  Aligned_cols=63  Identities=6%  Similarity=-0.046  Sum_probs=43.9

Q ss_pred             HHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HH
Q psy1726          49 FLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VF  126 (137)
Q Consensus        49 ~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~l  126 (137)
                      ... ..++....++++..|+|.+++..+.-.                        .....-.......++.++|.++ ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~------------------------s~~~~~~~~~~~~l~~~~g~l~~g~  301 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGS------------------------SNIMIGLLAAIPQFCTIFGMIWWSR  301 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------------------cHHHhHHHhhHHHHHHHHHHHHHHH
Confidence            344 567778889999999999997532100                        0111123356678889999999 99


Q ss_pred             HHHHhcCCC
Q psy1726         127 IRNRATYIS  135 (137)
Q Consensus       127 lidriGRK~  135 (137)
                      +.||+|||+
T Consensus       302 l~dr~~~r~  310 (412)
T TIGR02332       302 HSDRLKERK  310 (412)
T ss_pred             HhcccCccH
Confidence            999999764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.50  E-value=0.29  Score=40.20  Aligned_cols=70  Identities=3%  Similarity=-0.082  Sum_probs=43.6

Q ss_pred             chhHHHH-HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHH
Q psy1726          40 YPSRINK-AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLA  117 (137)
Q Consensus        40 ~~~~r~~-Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~  117 (137)
                      .++++++ .+.++ .++...+.++.+...+|.+.+..+.               +           ....-....+..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------s-----------~~~~~~~~~~~~~~   65 (426)
T PRK12307         12 ITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL---------------T-----------DMEGAFLATAAFIG   65 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---------------C-----------HHHHHHHHHHHHHH
Confidence            4445444 44455 7777777777777778876543322               0           11112233345677


Q ss_pred             HHHHHHH-HHHHHHhcCCC
Q psy1726         118 EFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       118 eipG~il-~llidriGRK~  135 (137)
                      .+.|.++ +.+.||+|||+
T Consensus        66 ~~l~~~~~g~l~dr~g~r~   84 (426)
T PRK12307         66 RPFGGALFGLLADKFGRKP   84 (426)
T ss_pred             HHHHHHHHHHHHHHhCChH
Confidence            7778888 99999999996

>TIGR00893 2A0114 d-galactonate transporter

Probab=94.44  E-value=0.26  Score=38.70  Aligned_cols=63  Identities=6%  Similarity=-0.135  Sum_probs=43.6

Q ss_pred             HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH
Q psy1726          47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY  124 (137)
Q Consensus        47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il  124 (137)
                      ...+. .++...+.++++..|+|.++.....                          .+ ...-....+..++.++|.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERG--------------------------LSILEAGFMASLPGIVGFIGMIL  270 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--------------------------ccHHHhhHHHHHHHHHHHHHHHH
Confidence            34445 6777788888899999988754311                          01 11123345667888999999


Q ss_pred             -HHHHHHhcCCC
Q psy1726         125 -VFIRNRATYIS  135 (137)
Q Consensus       125 -~llidriGRK~  135 (137)
                       ..+.||+|||+
T Consensus       271 ~g~~~~~~~~~~  282 (399)
T TIGR00893       271 GGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHhhcc
Confidence             99999999995

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.41  E-value=0.27  Score=38.98  Aligned_cols=65  Identities=6%  Similarity=-0.030  Sum_probs=44.0

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY  124 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il  124 (137)
                      +.+.+. ..+...+.++++..|+|.++.....-                         .....-....+..++.+++.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~~~~~  274 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGL-------------------------SANSALLVLMLSLILFFITIPL  274 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------ChhHHHHHHHHHHHHHHHHHHH
Confidence            345555 67777788889999999887532110                         0111223345567788888888


Q ss_pred             -HHHHHHhcCCC
Q psy1726         125 -VFIRNRATYIS  135 (137)
Q Consensus       125 -~llidriGRK~  135 (137)
                       ..+.||+|||+
T Consensus       275 ~g~l~dr~g~~~  286 (394)
T TIGR00883       275 SGALSDRIGRRP  286 (394)
T ss_pred             HHHHHHHhchHH
Confidence             99999999986

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=94.38  E-value=0.23  Score=41.87  Aligned_cols=26  Identities=12%  Similarity=-0.073  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++..++.++ +.+.||+|||+.
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~   95 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVF   95 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchh
Confidence            44566777888888 999999999963

>TIGR00895 2A0115 benzoate transport

Probab=94.30  E-value=0.26  Score=39.15  Aligned_cols=61  Identities=5%  Similarity=-0.071  Sum_probs=39.2

Q ss_pred             HHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-
Q psy1726          48 VFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        48 l~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-  124 (137)
                      +..+ .++...+.++......|.+.+..+.                           +.. .-....+..++.+++.++ 
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~   72 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGL---------------------------DPVQLGFLFSAGLIGMAFGALFF   72 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhccCC---------------------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344 6666666677777778876643321                           111 112233556777888888 


Q ss_pred             HHHHHHhcCCC
Q psy1726         125 VFIRNRATYIS  135 (137)
Q Consensus       125 ~llidriGRK~  135 (137)
                      +.+.||+|||+
T Consensus        73 g~l~d~~g~~~   83 (398)
T TIGR00895        73 GPLADRIGRKR   83 (398)
T ss_pred             HHHHHHhhhHH
Confidence            99999999986

>PRK03699 putative transporter; Provisional

Probab=94.20  E-value=0.21  Score=41.05  Aligned_cols=69  Identities=6%  Similarity=-0.015  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHH
Q psy1726          40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLA  117 (137)
Q Consensus        40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~  117 (137)
                      +++.+|-++.++ .++......+.+...+|++.+..+.                           +.. .-....+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~---------------------------s~~~~g~~~s~~~~~   54 (394)
T PRK03699          2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL---------------------------PVSSMSNTFTFLNAG   54 (394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC---------------------------CHHHHHHHHHHHHHH
Confidence            345566666666 7777777777788888987654332                           111 11223345677


Q ss_pred             HHHHHHH-HHHHHHhcCCC
Q psy1726         118 EFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       118 eipG~il-~llidriGRK~  135 (137)
                      ...|.++ ..+.||+|||+
T Consensus        55 ~~i~~~~~g~l~dr~g~r~   73 (394)
T PRK03699         55 ILISIFLNAWLMEIIPLKR   73 (394)
T ss_pred             HHHHHHHHHHHHHHhhHHH
Confidence            7888888 99999999986

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.86  E-value=0.29  Score=39.96  Aligned_cols=26  Identities=8%  Similarity=-0.106  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.+.++ +.+.||+|||+.
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~   75 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPV   75 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHH
Confidence            44556777778888 999999999963

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=93.84  E-value=0.45  Score=38.78  Aligned_cols=58  Identities=7%  Similarity=-0.051  Sum_probs=37.4

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid  129 (137)
                      +++...+..+......|.+.+..+.                           +.. .=....+..++.++|.++ +.+.|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~~~~~~g~l~d   75 (406)
T PRK11551         23 VALLEGLDLQSAGVAAPRMAQEFGL---------------------------DVAQMGWAFSAGILGLLPGALLGGRLAD   75 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555556666677876654322                           111 122334556778888888 99999


Q ss_pred             HhcCCCC
Q psy1726         130 RATYISQ  136 (137)
Q Consensus       130 riGRK~~  136 (137)
                      |+|||+.
T Consensus        76 r~g~r~~   82 (406)
T PRK11551         76 RIGRKRI   82 (406)
T ss_pred             HhCCchh
Confidence            9999974

>TIGR00891 2A0112 putative sialic acid transporter

Probab=93.84  E-value=0.36  Score=38.63  Aligned_cols=65  Identities=12%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726          45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY  123 (137)
Q Consensus        45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i  123 (137)
                      +....++ .++...+..+.+....|.+.+..+..                          ....-....+..++.+.+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--------------------------~~~~g~~~~~~~~~~~~~~~   65 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLT--------------------------TVDAASLISAALISRWFGAL   65 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------------------hhhHHHHHHHHHHHHHHHHH
Confidence            3334455 67777777777777778765443320                          11112223345677777888


Q ss_pred             H-HHHHHHhcCCC
Q psy1726         124 Y-VFIRNRATYIS  135 (137)
Q Consensus       124 l-~llidriGRK~  135 (137)
                      + +.+.||+|||+
T Consensus        66 ~~G~l~Dr~g~r~   78 (405)
T TIGR00891        66 MFGLWGDRYGRRL   78 (405)
T ss_pred             HHHHHHHHhccHH
Confidence            8 99999999996

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.74  E-value=0.41  Score=39.94  Aligned_cols=55  Identities=5%  Similarity=0.019  Sum_probs=38.3

Q ss_pred             hhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHHhcC
Q psy1726          55 VCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRATY  133 (137)
Q Consensus        55 ~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidriGR  133 (137)
                      ....+++++..+.|.+++..+.                          ..........+.+++.+.+.++ ..++||+||
T Consensus       282 ~~~~~~~~~~~~~p~i~~~~g~--------------------------~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~  335 (479)
T PRK10077        282 QQFVGINVVLYYAPEIFKTLGA--------------------------STDIALLQTIIVGVINLTFTVLAIMTVDKFGR  335 (479)
T ss_pred             HHHhChhHHHHHHHHHHHHcCC--------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344566777788988765432                          0112245566778889999999 999999999


Q ss_pred             CC
Q psy1726         134 IS  135 (137)
Q Consensus       134 K~  135 (137)
                      |+
T Consensus       336 r~  337 (479)
T PRK10077        336 KP  337 (479)
T ss_pred             hH
Confidence            85

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.67  E-value=0.44  Score=36.91  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=45.6

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726          45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN  122 (137)
Q Consensus        45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~  122 (137)
                      ++.+.+. .++...+++.+...+.|.++... +.                          ..........+.+++.++|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~i~~  228 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGL--------------------------SAAEAGLLLSLFGLGGILGA  228 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHHHHH
Confidence            4444455 67777777888888888877542 11                          11223445667788999999


Q ss_pred             HH-HHHHHHhcCCC
Q psy1726         123 YY-VFIRNRATYIS  135 (137)
Q Consensus       123 il-~llidriGRK~  135 (137)
                      ++ ..+.||+|||+
T Consensus       229 ~~~~~~~~~~~~~~  242 (352)
T cd06174         229 LLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99 99999999986

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=93.57  E-value=0.27  Score=42.03  Aligned_cols=63  Identities=11%  Similarity=-0.085  Sum_probs=42.3

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY  123 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i  123 (137)
                      ++.+++ .++.....++++..|+|.++... +.                         +.... -....+.+++.++|.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------s~~~a-~~~~~~~~~~~~ig~~  306 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGL-------------------------SLETA-GAIAASFGLMNLFARP  306 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC-------------------------CHHHH-HHHHHHHHHHHHHHHh
Confidence            344555 56666667788888999887543 21                         01112 3344556788899999


Q ss_pred             H-HHHHHHhcCC
Q psy1726         124 Y-VFIRNRATYI  134 (137)
Q Consensus       124 l-~llidriGRK  134 (137)
                      + +++.||+|||
T Consensus       307 ~~G~lsDr~~~r  318 (476)
T PLN00028        307 AGGYLSDVAARR  318 (476)
T ss_pred             hhHHHHHHHHHh
Confidence            9 9999999986

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=93.54  E-value=0.49  Score=39.84  Aligned_cols=56  Identities=9%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ..+...+.+|++..|+|.+++.. +.                         + ....-....+..++.++|.++ +++.|
T Consensus       261 ~~~~~~~~~~~~~~~~P~~l~~~~g~-------------------------s-~~~~~~~~~~~~~~~~~g~~~~G~l~d  314 (452)
T PRK11273        261 ANVFVYLLRYGILDWSPTYLKEVKHF-------------------------A-LDKSSWAYFLYEYAGIPGTLLCGWMSD  314 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445567789999999998753 21                         0 011223344677889999999 99999


Q ss_pred             HhcC
Q psy1726         130 RATY  133 (137)
Q Consensus       130 riGR  133 (137)
                      |+++
T Consensus       315 r~~~  318 (452)
T PRK11273        315 KVFR  318 (452)
T ss_pred             HHcc
Confidence            9943

>PRK10054 putative transporter; Provisional

Probab=93.54  E-value=0.28  Score=40.68  Aligned_cols=68  Identities=3%  Similarity=-0.185  Sum_probs=44.3

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP  120 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eip  120 (137)
                      .+|....+. ..|...++++.+.-++|..+.+. +.                          ...+.=....+..++.+.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~--------------------------s~~~~g~~~s~~~~~~~~   58 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSL--------------------------SVDLIGYAMTIALTIGVV   58 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHH
Confidence            344455566 78888888888888898877542 21                          011111222233566777


Q ss_pred             HHHH-HHHHHHhcCCCC
Q psy1726         121 GNYY-VFIRNRATYISQ  136 (137)
Q Consensus       121 G~il-~llidriGRK~~  136 (137)
                      +.++ +.+.||+|||+.
T Consensus        59 ~~~~~G~l~Dr~g~k~~   75 (395)
T PRK10054         59 FSLGFGILADKFDKKRY   75 (395)
T ss_pred             HHHHHHHHHhhcCcchh
Confidence            7888 999999999974

>TIGR00891 2A0112 putative sialic acid transporter

Probab=93.47  E-value=0.45  Score=38.09  Aligned_cols=59  Identities=7%  Similarity=0.018  Sum_probs=39.1

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ..+...+.++++..|+|.++.....                          .+.. .-....+.+++.++|.++ .++.|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~s~~~~~~~~~~~~~~~~~g~~~~g~l~d  299 (405)
T TIGR00891       246 LVLFANLYSHPIQDLLPTYLKADLG--------------------------LSPHTVANIVVFSNIGAIVGGCVFGFLGD  299 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556667777888987754211                          1111 122344667889999999 99999


Q ss_pred             HhcCCCC
Q psy1726         130 RATYISQ  136 (137)
Q Consensus       130 riGRK~~  136 (137)
                      |+|||+.
T Consensus       300 r~g~~~~  306 (405)
T TIGR00891       300 WLGRRKA  306 (405)
T ss_pred             HhCchhh
Confidence            9999863

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=93.09  E-value=0.3  Score=42.02  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=45.5

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHH
Q psy1726          45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGN  122 (137)
Q Consensus        45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~  122 (137)
                      +....++ ..+...++||++.-++|.++...+.-                        ..+ ...-.......++...+.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l------------------------g~s~~~ag~~~~~~~~~~~~~~   65 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGL------------------------GFSQEQAFIIFGAYSALVYLLT   65 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence            3445566 77778899999999999888653100                        011 122333445567788888


Q ss_pred             HH-HHHHHH-hcCCC
Q psy1726         123 YY-VFIRNR-ATYIS  135 (137)
Q Consensus       123 il-~llidr-iGRK~  135 (137)
                      ++ +++.|| +|||+
T Consensus        66 ~~~G~laDr~~G~~~   80 (475)
T TIGR00924        66 SVGWWFGDRVWGTKK   80 (475)
T ss_pred             hhHHHHHHhhcchHH
Confidence            88 999999 89986

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00896 CynX cyanate transporter

Probab=92.84  E-value=0.78  Score=36.84  Aligned_cols=57  Identities=11%  Similarity=0.026  Sum_probs=38.6

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      ..+...+.|+++..|+|.+++..+..                          ....-....+..++.++|.++ .++.||
T Consensus       205 ~~~~~~~~~~~~~~~lp~~~~~~g~~--------------------------~~~~g~~~~~~~~~~i~~~~~~g~l~dr  258 (355)
T TIGR00896       205 FFGLQSGLYYSLIGWLPAILISHGAS--------------------------AATAGSLLALMQLAQAASALLIPALARR  258 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            44556778899999999988643220                          111123344567889999999 999999


Q ss_pred             hcCC
Q psy1726         131 ATYI  134 (137)
Q Consensus       131 iGRK  134 (137)
                      +|+|
T Consensus       259 ~~~~  262 (355)
T TIGR00896       259 VKDQ  262 (355)
T ss_pred             hccc
Confidence            9543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00897 2A0118 polyol permease family

Probab=92.72  E-value=0.35  Score=39.98  Aligned_cols=67  Identities=6%  Similarity=-0.143  Sum_probs=44.1

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG  121 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG  121 (137)
                      ++|.....+ .++...+.++....++|.+++..+..                          ....=....+..++...+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s--------------------------~~~~g~~~~~~~~~~~i~   64 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLS--------------------------PQQSASAFTLYGIAAAIS   64 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCC--------------------------HHHhHHHHHHHHHHHHHH
Confidence            344444455 67777777777777888777543320                          111222344667888899


Q ss_pred             HHH-HHHHHHhcCCC
Q psy1726         122 NYY-VFIRNRATYIS  135 (137)
Q Consensus       122 ~il-~llidriGRK~  135 (137)
                      .++ +.+.||+|||+
T Consensus        65 ~~~~g~l~dr~g~k~   79 (402)
T TIGR00897        65 AWISGVVAEIIGPLK   79 (402)
T ss_pred             HHHHHHHHHHcCcHH
Confidence            999 99999999996

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.65  E-value=0.46  Score=38.78  Aligned_cols=67  Identities=7%  Similarity=0.002  Sum_probs=43.8

Q ss_pred             hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHHHHH
Q psy1726          42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTLAEF  119 (137)
Q Consensus        42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l~ei  119 (137)
                      .++|....++ ..+...+....+...+|.+.++.+.                           +. ..=+......++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------s~~~~G~~~s~~~l~~~   55 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL---------------------------PTWQVGVVSSSYFTGNL   55 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHHHH
Confidence            4455556666 6777777777777888988765332                           11 11222334456777


Q ss_pred             HHHHH-HHHHHHhcCCC
Q psy1726         120 PGNYY-VFIRNRATYIS  135 (137)
Q Consensus       120 pG~il-~llidriGRK~  135 (137)
                      .+.++ +.+.||+|||+
T Consensus        56 ~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633         56 VGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            78888 99999999986

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=92.33  E-value=0.76  Score=35.56  Aligned_cols=59  Identities=10%  Similarity=-0.120  Sum_probs=39.6

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      ..+...+.++......|.+.+..+.                          .....-....+..++.+.+.++ +.+.||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~d~   60 (352)
T cd06174           7 GFFLSGLDRGLLSPALPLLAEDLGL--------------------------SASQAGLIVSAFSLGYALGSLLAGYLSDR   60 (352)
T ss_pred             HHHHHHHhhhhhHhhHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5666777777888888877654322                          0112222344556777888888 999999


Q ss_pred             hcCCCC
Q psy1726         131 ATYISQ  136 (137)
Q Consensus       131 iGRK~~  136 (137)
                      +|||+.
T Consensus        61 ~g~r~~   66 (352)
T cd06174          61 FGRRRV   66 (352)
T ss_pred             hCCchh
Confidence            999973

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.23  E-value=0.43  Score=41.71  Aligned_cols=63  Identities=6%  Similarity=-0.119  Sum_probs=42.9

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY  124 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il  124 (137)
                      ++.+++ +.++..-+|-|+..|+|.++...-.                           ........++..+....+..+
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~---------------------------~~~~l~~~~l~~l~~~l~rpl  305 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP---------------------------DVNILRLAFFGPFIGAIARSV  305 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------hHHHHHHHHHHHHHHHHHHHh
Confidence            456666 7777777888899999988653110                           112233344556667777778


Q ss_pred             -HHHHHHhcCCC
Q psy1726         125 -VFIRNRATYIS  135 (137)
Q Consensus       125 -~llidriGRK~  135 (137)
                       +++.||+|+++
T Consensus       306 gG~LADRiG~~~  317 (462)
T PRK15034        306 GGAISDKFGGVR  317 (462)
T ss_pred             hHHHHHhcCchH
Confidence             99999999986

>PRK09528 lacY galactoside permease; Reviewed

Probab=92.13  E-value=0.63  Score=38.49  Aligned_cols=65  Identities=6%  Similarity=-0.102  Sum_probs=40.7

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY  123 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i  123 (137)
                      +...++ ..|...++++...-++|..+... +.                          .....=+...+..++...+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--------------------------s~~~~g~~~s~~~l~~~i~~~   64 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--------------------------SGTDTGIIFSANSLFALLFQP   64 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            444555 66666777766677777666542 21                          011112234456677777777


Q ss_pred             H-HHHHHHhcCCCC
Q psy1726         124 Y-VFIRNRATYISQ  136 (137)
Q Consensus       124 l-~llidriGRK~~  136 (137)
                      + +.+.||+|||+.
T Consensus        65 ~~G~l~Dr~g~r~~   78 (420)
T PRK09528         65 LYGLISDKLGLKKH   78 (420)
T ss_pred             HHHHHHHHhCchHH
Confidence            8 999999999963

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=91.61  E-value=1.2  Score=37.44  Aligned_cols=63  Identities=3%  Similarity=-0.101  Sum_probs=41.3

Q ss_pred             HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726          47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-  124 (137)
                      ...++ ..++..+.+|++..|+|.++.....-                        +.....+. ..+..++.+++.++ 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~------------------------s~~~~g~~-~~~~~~~~~i~~~~~  317 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRV------------------------SGKENGLL-SSLPYLFAWLCSIFA  317 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------------ChHHhHHH-HHHHHHHHHHHHHHH
Confidence            34445 67788888899999999998653110                        01112122 33456777888888 


Q ss_pred             HHHHHHhcCC
Q psy1726         125 VFIRNRATYI  134 (137)
Q Consensus       125 ~llidriGRK  134 (137)
                      +.+.||+++|
T Consensus       318 g~l~d~~~~~  327 (465)
T TIGR00894       318 GYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHc
Confidence            9999998765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=91.54  E-value=1.2  Score=37.28  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             HHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHHh
Q psy1726          53 RTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRA  131 (137)
Q Consensus        53 wf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidri  131 (137)
                      -+.....+|++..|+|.++.....-                         .....-....+.+++.++|.++ .++.||+
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~  314 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHF-------------------------ALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  314 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCC-------------------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344566789999999988753110                         0111233445677889999999 9999999


Q ss_pred             cCC
Q psy1726         132 TYI  134 (137)
Q Consensus       132 GRK  134 (137)
                      |++
T Consensus       315 ~~~  317 (438)
T TIGR00712       315 FKG  317 (438)
T ss_pred             ccC
Confidence            754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=91.31  E-value=0.69  Score=38.49  Aligned_cols=59  Identities=10%  Similarity=0.014  Sum_probs=41.6

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      ..+...+.+++...++|.++.....-                         .....-......+++.++|.++ +++.||
T Consensus       263 ~~~~~~~~~~~~~~~~p~~~~~~~g~-------------------------s~~~~g~~~~~~~~~~~~~~~~~g~l~~r  317 (485)
T TIGR00711       263 YMSLLGLGLYGSFYLLPLYLQQVLGY-------------------------TALQAGLHILPVGLAPMLSSPIAGRMGDK  317 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56667788899999999888643110                         0112233455677889999999 999999


Q ss_pred             hcCCC
Q psy1726         131 ATYIS  135 (137)
Q Consensus       131 iGRK~  135 (137)
                      +|||+
T Consensus       318 ~~~~~  322 (485)
T TIGR00711       318 IDPRK  322 (485)
T ss_pred             cCcHH
Confidence            99985

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=91.30  E-value=0.74  Score=36.66  Aligned_cols=58  Identities=14%  Similarity=-0.043  Sum_probs=37.9

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ..+.....++++..|+|.++...-.                          .+. ..-....+..++.++|.++ .++.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  286 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFG--------------------------LSKVTAGAYASLGGLLGSLARPLGGAISD  286 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CcHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            4444555677888899988754311                          111 1122344566778889988 99999


Q ss_pred             HhcCCC
Q psy1726         130 RATYIS  135 (137)
Q Consensus       130 riGRK~  135 (137)
                      |+|||+
T Consensus       287 r~g~~~  292 (366)
T TIGR00886       287 RLGGAR  292 (366)
T ss_pred             hhccch
Confidence            999975

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=90.91  E-value=1.2  Score=34.94  Aligned_cols=28  Identities=4%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       109 ~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ....+.+++.++|.++ .++.||+|||+.
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  272 (377)
T TIGR00890       244 LAVSISSIFNGGGRPFLGALSDKIGRQKT  272 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3455677888999999 999999999864

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=90.61  E-value=1.2  Score=39.09  Aligned_cols=60  Identities=13%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             HH-HHHhhhHHH---HHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726          50 LF-HRTVCAFCY---YGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        50 l~-iwf~~~~~Y---yGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-  124 (137)
                      +| +-++..++|   ||+.-|.|..+.+...-                        +. .+.=....+.-.+.+||.++ 
T Consensus       254 iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~------------------------s~-~~a~~a~~lfE~agl~G~Ll~  308 (448)
T COG2271         254 IWLLALANVFVYVVRYGINDWGPLYLSEVKGF------------------------SL-VKANWAISLFEVAGLPGTLLA  308 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC------------------------CH-HHHHHHHHHHHHHhhHHHHHH
Confidence            45 555555666   99999999988653220                        01 12234455678999999999 


Q ss_pred             HHHHHHh--cCC
Q psy1726         125 VFIRNRA--TYI  134 (137)
Q Consensus       125 ~llidri--GRK  134 (137)
                      +++.||+  |||
T Consensus       309 GwlSDklfkgrR  320 (448)
T COG2271         309 GWLSDKLFKGRR  320 (448)
T ss_pred             HHHHHHhccccc
Confidence            9999986  565

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=90.48  E-value=0.99  Score=35.91  Aligned_cols=25  Identities=12%  Similarity=-0.095  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..++.+.+.++ +.+.||+|||+
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~   68 (366)
T TIGR00886        43 VAVPVLAGAVLRIILGFLVDKFGPRY   68 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            34556777888888 99999999996

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=90.38  E-value=1.7  Score=35.24  Aligned_cols=69  Identities=7%  Similarity=-0.094  Sum_probs=40.6

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh---HHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD---YMDLLWTTLAE  118 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~---y~~~~i~~l~e  118 (137)
                      +.+....+| ..+...++++.....+|.++++.+..              .          .....   -....+..++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------~----------~~~~~~~~g~~~~~~~~~~   67 (408)
T PRK09874         12 WKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVT--------------G----------HSALNMWSGLVFSITFLFS   67 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCc--------------c----------chhHHHHHHHHHHHHHHHH
Confidence            344445556 66667777777777888877543220              0          00000   12233445566


Q ss_pred             HHHHHH-HHHHHHhcCCC
Q psy1726         119 FPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       119 ipG~il-~llidriGRK~  135 (137)
                      ..+.++ +.+.||+|||+
T Consensus        68 ~~~~~~~g~l~dr~g~r~   85 (408)
T PRK09874         68 AIASPFWGGLADRKGRKI   85 (408)
T ss_pred             HHHHHHHHHHhhhhCcHH
Confidence            667777 89999999986

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=90.19  E-value=0.79  Score=38.33  Aligned_cols=67  Identities=6%  Similarity=-0.085  Sum_probs=37.0

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ++|+..+.+|++..|++.-+......    ......              ..+.. .=....+..++...|.++ +.+.|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~p~l~----~i~~~~--------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d   76 (413)
T PRK15403         15 LFFPMALILYDFAAYLTTDLIQPGII----NVVRDF--------------NADVSLAPASVSLYLAGGMALQWLLGPLSD   76 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCHH----HHHHHh--------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            57777888899988888644322110    000000              00111 111122334566677777 99999


Q ss_pred             HhcCCCC
Q psy1726         130 RATYISQ  136 (137)
Q Consensus       130 riGRK~~  136 (137)
                      |+|||+.
T Consensus        77 r~Grr~~   83 (413)
T PRK15403         77 RIGRRPV   83 (413)
T ss_pred             HcCchHH
Confidence            9999973

>PRK11663 regulatory protein UhpC; Provisional

Probab=90.07  E-value=1.9  Score=36.13  Aligned_cols=55  Identities=9%  Similarity=-0.014  Sum_probs=37.8

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ..+...+.++++..|+|.++... +.               +          .... -....+.+++.++|.++ +++.|
T Consensus       251 ~~~~~~~~~~~~~~~~p~~l~~~~g~---------------s----------~~~a-~~~~~~~~~~~~~g~~~~g~l~d  304 (434)
T PRK11663        251 SYVLVYVVRAAINDWGNLYMSETLGV---------------D----------LVTA-NSAVSMFELGGFIGALVAGWGSD  304 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC---------------C----------HHHH-HHHHHHHHHHHHHHHHHHhhhHH
Confidence            56667778889999999988543 21               0          0111 22344567888999999 99999


Q ss_pred             Hhc
Q psy1726         130 RAT  132 (137)
Q Consensus       130 riG  132 (137)
                      |++
T Consensus       305 r~~  307 (434)
T PRK11663        305 KLF  307 (434)
T ss_pred             Hhc
Confidence            993

>PRK15075 citrate-proton symporter; Provisional

Probab=90.00  E-value=1.4  Score=36.74  Aligned_cols=67  Identities=7%  Similarity=-0.130  Sum_probs=39.0

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH----HHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY----MDLLWTTLAEFP  120 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y----~~~~i~~l~eip  120 (137)
                      -...++ .||...+-...+....|.+.+..+..              +          ......    .......++-.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~--------------~----------~~~~~~~~~~~~~~~~~l~~~i   71 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPA--------------G----------NEFASLMLTFAVFGAGFLMRPL   71 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------C----------CchHHHHHHHHHHHHHHHHhhh
Confidence            344455 67777777777778888877654320              0          000111    111222333356


Q ss_pred             HHHH-HHHHHHhcCCCC
Q psy1726         121 GNYY-VFIRNRATYISQ  136 (137)
Q Consensus       121 G~il-~llidriGRK~~  136 (137)
                      |.++ +.+.||+|||+.
T Consensus        72 g~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         72 GAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             HHHHHHHHhhhhchHHH
Confidence            7888 999999999973

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=89.91  E-value=1.3  Score=36.81  Aligned_cols=63  Identities=10%  Similarity=-0.081  Sum_probs=39.9

Q ss_pred             HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726          47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-  124 (137)
                      ++.++ .++...+....+....|.+.+..+..                          ....-+......++.+.+.++ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s--------------------------~~~~~~~~~~~~~~~~~~~~~~   57 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSS--------------------------LSQVQWVITSYMLANAISIPLT   57 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------hhhhhHHHHHHHHHHHHHHHhH
Confidence            33444 56666666666666778776544320                          111123344567788888888 


Q ss_pred             HHHHHHhcCCC
Q psy1726         125 VFIRNRATYIS  135 (137)
Q Consensus       125 ~llidriGRK~  135 (137)
                      +.+.||+|||+
T Consensus        58 g~l~dr~g~r~   68 (485)
T TIGR00711        58 GWLAKRFGTRR   68 (485)
T ss_pred             HHHHHHhCcHH
Confidence            99999999996

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=89.85  E-value=1.7  Score=35.64  Aligned_cols=28  Identities=7%  Similarity=-0.099  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       108 y~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      -+...+..++.+.+.++ +.+.||+|||+
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~   69 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLKK   69 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            34455677778888888 99999999986

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=89.70  E-value=1.2  Score=35.45  Aligned_cols=26  Identities=15%  Similarity=0.002  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ...+..++.+.+.++ +.+.||+|||+
T Consensus        45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~   71 (385)
T TIGR00710        45 TLTLYLLGFAAGQLLWGPLSDRYGRRP   71 (385)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCChH
Confidence            344556777888888 99999999996

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=89.54  E-value=0.83  Score=35.92  Aligned_cols=26  Identities=12%  Similarity=-0.074  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.+.++ +.+.||+|||+.
T Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~   62 (379)
T TIGR00881        36 LSSFSIAYGISKFVMGSVSDRSNPRVF   62 (379)
T ss_pred             HHHHHHHHHhhhhhhhHHHHhhCCeeh
Confidence            33556777888888 999999999974

>PF13347 MFS_2: MFS/sugar transport protein

Probab=89.47  E-value=2.4  Score=35.35  Aligned_cols=25  Identities=16%  Similarity=-0.019  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         112 LWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       112 ~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      .+..++.+++.++ ..+.+|+|+|+.
T Consensus       267 ~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  267 LIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccceee
Confidence            3567788888888 999999999974

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=89.45  E-value=1.7  Score=35.45  Aligned_cols=24  Identities=8%  Similarity=-0.200  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~~  136 (137)
                      +..++...+.++ +.+.||+|||+.
T Consensus        59 ~~~~~~~i~~~~~G~l~Dr~g~r~~   83 (399)
T PRK05122         59 LQYLATLLSRPHAGRYADTLGPKKA   83 (399)
T ss_pred             HHHHHHHHhchhhHhHHhccCCcch
Confidence            445566666777 999999999974

>PRK03545 putative arabinose transporter; Provisional

Probab=89.03  E-value=3  Score=34.05  Aligned_cols=25  Identities=24%  Similarity=0.032  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+.+++.++|.++ ..+.||+|||.
T Consensus       247 ~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        247 LLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchhH
Confidence            44567889999999 99999999874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=88.87  E-value=3.4  Score=38.27  Aligned_cols=26  Identities=12%  Similarity=0.065  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.|.++ +++.||+|||+.
T Consensus       208 ~s~~~lG~iiG~li~G~LsDR~GRR~~  234 (742)
T TIGR01299       208 GLIVYLGMMVGAFFWGGLADKLGRKQC  234 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            34556888899999 999999999963

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03893 putative sialic acid transporter; Provisional

Probab=88.84  E-value=1.5  Score=36.78  Aligned_cols=26  Identities=12%  Similarity=0.109  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ...+.+++.++|.++ +++.||+|||+
T Consensus       316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~  342 (496)
T PRK03893        316 VLFFSGFGAAVGCCVGGFLGDWLGTRK  342 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            345667888999999 99999999985

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=88.80  E-value=1.6  Score=36.59  Aligned_cols=26  Identities=12%  Similarity=-0.068  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++...+.++ +.+.||+|||+.
T Consensus        67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~   93 (438)
T TIGR00712        67 LSAISIAYGFSKFIMGSVSDRSNPRVF   93 (438)
T ss_pred             HHHHHHHHHHhhhccchhhhccCCcee
Confidence            34566777888888 999999999963

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10133 L-fucose transporter; Provisional

Probab=88.61  E-value=2.6  Score=35.76  Aligned_cols=68  Identities=12%  Similarity=-0.089  Sum_probs=43.0

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG  121 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG  121 (137)
                      +....+.+. +.|...+.........|++-+..+.                          .....-+......++...+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--------------------------s~~~~gl~~~~~~~g~~i~   77 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--------------------------TNFQAGLIQSAFYFGYFII   77 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CHHHHHHHHHHHHHHHHHH
Confidence            333334444 5666677777777788876333221                          0122233445667888888


Q ss_pred             HHH-HHHHHHhcCCCC
Q psy1726         122 NYY-VFIRNRATYISQ  136 (137)
Q Consensus       122 ~il-~llidriGRK~~  136 (137)
                      .++ +.++||+|||+.
T Consensus        78 ~~~~g~l~dr~G~r~~   93 (438)
T PRK10133         78 PIPAGILMKKLSYKAG   93 (438)
T ss_pred             HHHHHHHHHHhCcHHH
Confidence            888 999999999963

>PRK03633 putative MFS family transporter protein; Provisional

Probab=88.43  E-value=2.5  Score=34.44  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..+++++|.++ ..+.||+|||.
T Consensus       241 ~~~~~~~~~~~~~~~g~l~dr~~~~~  266 (381)
T PRK03633        241 MALLVSAGILGQWPIGRLADRFGRLL  266 (381)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence            44667888999999 99999999975

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=88.39  E-value=2.4  Score=34.74  Aligned_cols=25  Identities=4%  Similarity=-0.156  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..++..++.++ +.+.||+|||+
T Consensus        54 ~~~~~~~~~~~~~~~G~l~dr~g~r~   79 (406)
T PRK15402         54 MTAYLAGGMFLQWLLGPLSDRIGRRP   79 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            34566777788888 99999999996

>PRK11010 ampG muropeptide transporter; Validated

Probab=87.88  E-value=2.1  Score=36.86  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         112 LWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       112 ~i~~l~eipG~il-~llidriGRK~  135 (137)
                      .+..+++++|.++ +.++||+|||+
T Consensus       266 ~~g~i~~iiG~ll~G~L~dr~g~~~  290 (491)
T PRK11010        266 TLGLLATIVGALYGGILMQRLSLFR  290 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3445789999999 99999999875

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=87.48  E-value=2.2  Score=36.94  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          56 CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        56 ~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      .+++||.++-|+|.++...+..                          ....=...-+..++++|+.+. -++..|
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~s--------------------------a~~aG~llsl~~l~~~~~~ll~P~la~R  269 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLS--------------------------AAEAGSLLSLMQLAQLPTALLIPLLARR  269 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCC--------------------------HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999876541                          111122344667888998888 777776

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=86.97  E-value=2.3  Score=33.32  Aligned_cols=28  Identities=0%  Similarity=-0.223  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       109 ~~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      +...+..++...+.++ +.+.||+|||+.
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r~~   70 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLLADKFGPRAV   70 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHcCccch
Confidence            3344567777888888 999999999974

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=86.26  E-value=3.5  Score=34.16  Aligned_cols=23  Identities=4%  Similarity=-0.057  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~  135 (137)
                      +..++...+.++ +.+.||+|||+
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~   86 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRY   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHH
Confidence            456777778888 99999999996

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=86.00  E-value=2.5  Score=36.62  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=22.5

Q ss_pred             HHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726          45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEA   73 (137)
Q Consensus        45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~   73 (137)
                      +....++ +-++..++||++..|+|..+..
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~   50 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVK   50 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566 7777889999999999988754

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=85.78  E-value=2.5  Score=36.67  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726          44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEA   73 (137)
Q Consensus        44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~   73 (137)
                      .|....++ +-+.-.++|||+..+++..+.+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~   43 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVK   43 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555 6677889999999999987754

>PRK15011 sugar efflux transporter B; Provisional

Probab=85.22  E-value=3.8  Score=33.69  Aligned_cols=23  Identities=13%  Similarity=-0.021  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~  135 (137)
                      +..++++++.++ ..+.||+|||+
T Consensus       260 ~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        260 TAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHH
Confidence            345677888899 99999999985

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=85.13  E-value=3  Score=32.50  Aligned_cols=25  Identities=8%  Similarity=-0.088  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..++...+.++ +.+.||+|||+
T Consensus        38 ~~~~~~~~~~~~~~~g~l~dr~g~r~   63 (352)
T PF07690_consen   38 FSAFFLGSALFSPFAGYLSDRFGRRR   63 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            33456677788888 99999999986

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=85.08  E-value=4  Score=35.65  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=51.8

Q ss_pred             chhhhccccccchhHHHHHHHHHHHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH
Q psy1726          29 GVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY  108 (137)
Q Consensus        29 ~i~~LF~~~~~~~~~r~~Tl~l~iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y  108 (137)
                      ++++|.+|+.+-++++.....+..||...=++.++......+....-.                         -...+..
T Consensus       266 g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg-------------------------~s~~~l~  320 (477)
T PF11700_consen  266 GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLG-------------------------MSTTQLI  320 (477)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------cCHHHHH
Confidence            566676666544444333333337877777777776666543332110                         0123345


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726         109 MDLLWTTLAEFPGNYY-VFIRNRATYI  134 (137)
Q Consensus       109 ~~~~i~~l~eipG~il-~llidriGRK  134 (137)
                      ...++..+..++|.++ .++-||+|-|
T Consensus       321 ~~~l~~~i~a~~Ga~~~g~l~~r~g~k  347 (477)
T PF11700_consen  321 VFGLVVQIVAIIGALLFGWLQDRFGPK  347 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            6677889999999999 9999999988

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=84.96  E-value=1.8  Score=33.75  Aligned_cols=58  Identities=9%  Similarity=0.032  Sum_probs=38.4

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC--hhhHHHHHHHHHHHHHHHHH-HHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN--TQDYMDLLWTTLAEFPGNYY-VFIR  128 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~--~~~y~~~~i~~l~eipG~il-~lli  128 (137)
                      ..+...++++++..|+|.++.....                          .+  ........+.+++.+++.++ ..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  267 (352)
T PF07690_consen  214 AFFLFFFVFSGFSFFLPLYLQEVLG--------------------------FSGPSQAGLLFSIFGIVGIIGSLLAGRLS  267 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHH--------------------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhcccchhhhhccC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667888899999986432211                          12  12233355667778888888 9999


Q ss_pred             HHhcCCC
Q psy1726         129 NRATYIS  135 (137)
Q Consensus       129 driGRK~  135 (137)
                      ||+|+|+
T Consensus       268 ~~~~~~~  274 (352)
T PF07690_consen  268 DRFGRRR  274 (352)
T ss_dssp             HHTTCHH
T ss_pred             HHcCcHH
Confidence            9999753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=84.85  E-value=6.6  Score=32.09  Aligned_cols=26  Identities=15%  Similarity=-0.036  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+.+++++++.+. ..+.||+|||+.
T Consensus       260 ~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       260 TTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            34456778888888 999999999874

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=84.66  E-value=4.2  Score=33.88  Aligned_cols=23  Identities=4%  Similarity=-0.351  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~  135 (137)
                      +..++...+.+. +.+.||+|||+
T Consensus        51 ~~~~~~~~~~~~~g~l~dr~G~r~   74 (412)
T TIGR02332        51 LFYAAYVICGIPSNIMLAIIGARR   74 (412)
T ss_pred             HHHHHHHHHHhhHHHHHHHhChHH
Confidence            334556666777 89999999986

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=84.11  E-value=5  Score=33.87  Aligned_cols=23  Identities=4%  Similarity=-0.086  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         114 TTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       114 ~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..++...+.++ +.+.||+|||+.
T Consensus        73 ~~~~~~~~~~~~G~l~Dr~g~r~~   96 (467)
T PRK09556         73 FSITYGVGKTLVGYYADGKNTKQF   96 (467)
T ss_pred             HHHHHHHHHhhhhhHhhccCccch
Confidence            45666677778 999999999974

>PRK10091 MFS transport protein AraJ; Provisional

Probab=83.81  E-value=3.4  Score=33.76  Aligned_cols=26  Identities=12%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      .....++.+.|.++ +.+.||+|||+.
T Consensus        44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~   70 (382)
T PRK10091         44 ISYYALGVVVGAPIIALFSSRYSLKHI   70 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHH
Confidence            34557788888888 999999999963

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=83.30  E-value=6.8  Score=30.69  Aligned_cols=56  Identities=5%  Similarity=0.065  Sum_probs=36.5

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY-VFIRN  129 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il-~llid  129 (137)
                      ..+...+.++++..|.|.++.....                          .+ ...-....+.+++.++|.++ .++.|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  277 (379)
T TIGR00881       224 GYVFVYVVRTGILDWSPLYLTQEKG--------------------------FSKEKASWAFTLYELGGLVGTLLAGWLSD  277 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC--------------------------CCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            4555566677888899987754211                          11 12233445667888999999 99999


Q ss_pred             HhcC
Q psy1726         130 RATY  133 (137)
Q Consensus       130 riGR  133 (137)
                      |.++
T Consensus       278 r~~~  281 (379)
T TIGR00881       278 KLFN  281 (379)
T ss_pred             HHcC
Confidence            8643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=83.24  E-value=7.3  Score=30.42  Aligned_cols=26  Identities=12%  Similarity=0.029  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ...+.+++.++|.++ ..+.||.|||.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  278 (365)
T TIGR00900       252 VLAAFGLGALLGALLLGLLGRYFKRMA  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence            344567788899999 99999999875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=83.23  E-value=8.5  Score=32.08  Aligned_cols=24  Identities=13%  Similarity=-0.047  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         112 LWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       112 ~i~~l~eipG~il-~llidriGRK~  135 (137)
                      .+..++.++|.++ +.+.||+|||+
T Consensus        70 ~~~~~~~~ig~~~~G~l~Dr~Grr~   94 (432)
T PRK10406         70 AAGFLMRPIGGWLFGRIADKHGRKK   94 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            3444555689999 99999999996

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=83.20  E-value=4.8  Score=34.11  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=15.7

Q ss_pred             HHHHHHHHH-HHHHHHhcCCCC
Q psy1726         116 LAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       116 l~eipG~il-~llidriGRK~~  136 (137)
                      ++...+.++ +.++||+|||+.
T Consensus        65 ~~~~~~~~~~G~l~dr~g~r~~   86 (455)
T TIGR00892        65 AVLYAGGPISSILVNRFGCRPV   86 (455)
T ss_pred             HHHHHhhHHHHHHHHHcCchHH
Confidence            344555667 999999999973

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=82.83  E-value=6.7  Score=31.84  Aligned_cols=26  Identities=8%  Similarity=-0.106  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.+.++ +.+.||+|||+.
T Consensus        44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~   70 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIADRSGRKPV   70 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHhCChHH
Confidence            34455677778888 999999999963

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=82.76  E-value=4.4  Score=32.25  Aligned_cols=25  Identities=12%  Similarity=0.020  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+.+++.++|.++ ..+.||+|||+
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~~  273 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAKS  273 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34567888999999 99999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=82.76  E-value=4.4  Score=31.68  Aligned_cols=26  Identities=8%  Similarity=0.005  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.+.++ +.+.||+|||+.
T Consensus        35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~   61 (399)
T TIGR00893        35 FSAFSWGYVVGQFPGGWLLDRFGARKT   61 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCccee
Confidence            34566777888888 999999999974

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=82.49  E-value=4.1  Score=33.51  Aligned_cols=21  Identities=14%  Similarity=-0.029  Sum_probs=18.1

Q ss_pred             HHHHHHHHHH-HHHHHHhcCCC
Q psy1726         115 TLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       115 ~l~eipG~il-~llidriGRK~  135 (137)
                      .+++++|.++ ..+.||+|||+
T Consensus       256 ~~~~i~g~~~~g~l~~r~g~~~  277 (402)
T PRK11902        256 LAATIVGALAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHH
Confidence            4568999999 99999999875

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=82.42  E-value=6.5  Score=32.52  Aligned_cols=25  Identities=8%  Similarity=-0.106  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ....+++.++|.++ ..+.||.++++
T Consensus       247 ~~~~~~g~i~g~~~~~~l~~~~~~~~  272 (393)
T PRK11195        247 QAVVAIGIAVGAGAAARLVTLETVLR  272 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            34556777888888 78888777664

>PRK09952 shikimate transporter; Provisional

Probab=82.32  E-value=11  Score=31.70  Aligned_cols=24  Identities=13%  Similarity=-0.122  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~~  136 (137)
                      +.-++...|.++ +.+.||+|||+.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHH
Confidence            334556788888 999999999963

>PRK12382 putative transporter; Provisional

Probab=82.25  E-value=5.2  Score=32.49  Aligned_cols=23  Identities=13%  Similarity=-0.074  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         113 WTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       113 i~~l~eipG~il-~llidriGRK~  135 (137)
                      +..++...+.++ +.+.||+|||+
T Consensus        59 ~~~~~~~i~~~~~G~l~Dr~g~r~   82 (392)
T PRK12382         59 IQFLATVLTRGYAGRLADQYGAKR   82 (392)
T ss_pred             HHHHHHHHHhhhhhHHHHhhcchH
Confidence            344555666677 99999999996

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=82.05  E-value=4.1  Score=35.54  Aligned_cols=64  Identities=9%  Similarity=-0.087  Sum_probs=43.2

Q ss_pred             HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726          44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN  122 (137)
Q Consensus        44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~  122 (137)
                      .+++..++ ..+...-++-|+..|+|.++...=.                            .+.-....+..+.-++|.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg----------------------------~~~~~Ag~~a~~f~~~g~  268 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG----------------------------LSPVTAGLIAFLFPLIGA  268 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------------CChhhHHHHHHHHHHHHH
Confidence            55666666 7777777788999999998864311                            111122245566666666


Q ss_pred             HH----HHHHHHhcCCC
Q psy1726         123 YY----VFIRNRATYIS  135 (137)
Q Consensus       123 il----~llidriGRK~  135 (137)
                      ++    +.+.||+|.++
T Consensus       269 l~Rp~GG~LsDR~Gg~r  285 (417)
T COG2223         269 LARPLGGWLSDRIGGRR  285 (417)
T ss_pred             HHHhccchhhhhccchh
Confidence            66    79999999876

>PRK10489 enterobactin exporter EntS; Provisional

Probab=81.98  E-value=4.8  Score=33.13  Aligned_cols=26  Identities=19%  Similarity=0.031  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      .....++.+++.++ +.+.||+|||+.
T Consensus        58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~   84 (417)
T PRK10489         58 VTLTGGAMFIGLMVGGVLADRYDRKKL   84 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence            33456677778888 999999999974

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=81.58  E-value=6.4  Score=33.04  Aligned_cols=26  Identities=8%  Similarity=-0.165  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ......++.+.+.+. ..++||+|||+
T Consensus        43 l~s~~~~g~~i~~~~~g~l~~r~G~r~   69 (410)
T TIGR00885        43 VQSAFYGGYFIMAIPAAIFMKKLSYKA   69 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            344566778888888 99999999996

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=81.49  E-value=5.5  Score=31.11  Aligned_cols=26  Identities=12%  Similarity=-0.175  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ..+..++.+.+.++ +.+.||+|||+.
T Consensus        40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~   66 (365)
T TIGR00900        40 ALAGMLPYVVLSPIAGALADRYDRKKV   66 (365)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhchhHH
Confidence            33445666677777 999999999963

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=80.99  E-value=6.4  Score=33.67  Aligned_cols=59  Identities=10%  Similarity=-0.062  Sum_probs=38.3

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      .-+...+++++...++|..++....-                         .....=......+++...+.++ +.++||
T Consensus       267 ~~~~~~~~~~~~~~~~~~~lq~v~g~-------------------------s~~~ag~~~~~~~~~~~~~~~~~g~l~~r  321 (495)
T PRK14995        267 MAMTAMITLVGFELLMAQELQFVHGL-------------------------SPLEAGMFMLPVMVASGFSGPIAGILVSR  321 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456667888888999877653210                         0111122344456777888888 999999


Q ss_pred             hcCCC
Q psy1726         131 ATYIS  135 (137)
Q Consensus       131 iGRK~  135 (137)
                      +|||+
T Consensus       322 ~g~~~  326 (495)
T PRK14995        322 LGLRL  326 (495)
T ss_pred             cCchH
Confidence            99975

>PRK10133 L-fucose transporter; Provisional

Probab=80.87  E-value=8.3  Score=32.65  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ......++.+.|.++ ..+.||+|||+
T Consensus       300 ~~~~~~~~~~vG~~~~g~l~~r~g~~~  326 (438)
T PRK10133        300 YLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            345667788999999 99999999875

>PRK03545 putative arabinose transporter; Provisional

Probab=80.86  E-value=6  Score=32.24  Aligned_cols=22  Identities=0%  Similarity=-0.161  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         114 TTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       114 ~~l~eipG~il-~llidriGRK~  135 (137)
                      ..++...+.+. +.+.||+|||+
T Consensus        53 ~~~~~~~~~~~~g~l~dr~g~r~   75 (390)
T PRK03545         53 YAWVVALMSLPLMLLTSNVERRK   75 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHH
Confidence            34455666677 89999999996

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=80.64  E-value=5.7  Score=34.89  Aligned_cols=67  Identities=10%  Similarity=0.038  Sum_probs=41.2

Q ss_pred             HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726          44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN  122 (137)
Q Consensus        44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~  122 (137)
                      +.+.+.++ ++++..++|--..-.++-++...+.               +           ....-....+..+..+...
T Consensus         3 ~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~---------------~-----------~~~~~~i~~~~~l~~~i~~   56 (477)
T TIGR01301         3 LRKLLRVASVAAGVQFGWALQLSLLTPYVQELGI---------------P-----------HAWASIIWLCGPLSGLLVQ   56 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHHHHHHHHHHHHHHHHH
Confidence            35566777 8888888875555555555543322               0           1122333445566666677


Q ss_pred             HH-HHHHH----HhcCCCC
Q psy1726         123 YY-VFIRN----RATYISQ  136 (137)
Q Consensus       123 il-~llid----riGRK~~  136 (137)
                      .+ +.+.|    |+|||+.
T Consensus        57 Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301        57 PLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             hHeeehhcCCCCCCCChHH
Confidence            77 89999    5999973

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533|consensus

Probab=80.21  E-value=2.2  Score=37.70  Aligned_cols=62  Identities=6%  Similarity=-0.067  Sum_probs=42.9

Q ss_pred             HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhcc-CccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726          44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASD-TRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG  121 (137)
Q Consensus        44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG  121 (137)
                      ..++.... .+|+....-||+..|+|.++.... ..                         .... =...+...++++.|
T Consensus       272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s-------------------------~~~a-~~ls~~~~~~g~v~  325 (495)
T KOG2533|consen  272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYS-------------------------ELQA-NLLSTPYDVGGIVG  325 (495)
T ss_pred             chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcC-------------------------hHHh-ccccchHHhhhHHH
Confidence            34555566 788888888999999999987621 10                         0111 12234567889999


Q ss_pred             HHH-HHHHHHh
Q psy1726         122 NYY-VFIRNRA  131 (137)
Q Consensus       122 ~il-~llidri  131 (137)
                      .++ +++.||+
T Consensus       326 ~i~ag~lsdr~  336 (495)
T KOG2533|consen  326 LILAGYLSDRL  336 (495)
T ss_pred             HHHHHHHHHHH
Confidence            999 9999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.68
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	95.09
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	94.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	93.87
2xut_A	524	Proton/peptide symporter family protein; transport	92.98
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	92.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	92.83
2cfq_A	417	Lactose permease; transport, transport mechanism,	92.3
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	91.87
2cfq_A	417	Lactose permease; transport, transport mechanism,	89.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	80.58

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.68  E-value=0.0031  Score=50.92  Aligned_cols=64  Identities=5%  Similarity=-0.017  Sum_probs=48.7

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY  124 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il  124 (137)
                      ..+.++ .++....+++.+..+.|.++...+.                          .....+...++.++..+++.++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~  331 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA--------------------------STDIALLQTIIVGVINLTFTVL  331 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC--------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC--------------------------CccchhhHHHHHHHHHHHHHHH
Confidence            344455 6777777888888999988765432                          1234466778889999999999


Q ss_pred             -HHHHHHhcCCC
Q psy1726         125 -VFIRNRATYIS  135 (137)
Q Consensus       125 -~llidriGRK~  135 (137)
                       .+++||+|||+
T Consensus       332 ~~~l~dr~Grr~  343 (491)
T 4gc0_A          332 AIMTVDKFGRKP  343 (491)
T ss_dssp             HHHHHHHHCSHH
T ss_pred             HHHHHHhhcCcc
Confidence             99999999996

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=95.09  E-value=0.053  Score=42.71  Aligned_cols=74  Identities=9%  Similarity=-0.048  Sum_probs=47.9

Q ss_pred             cchhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHH-hhhc-cCccCCCccccccCCCCCCCccccccccCC
Q psy1726          28 TGVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTEL-FEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLN  104 (137)
Q Consensus        28 ~~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~  104 (137)
                      .+++++++    ++.++    .+. ..+...+.++++..|+|.+ ++.. +.                          ..
T Consensus       249 ~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------------~~  294 (438)
T 3o7q_A          249 ASLSRLAR----IRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGM--------------------------TA  294 (438)
T ss_dssp             HHHHHHTT----CSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--------------------------CH
T ss_pred             hhHHHHHh----ChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCc--------------------------ch
Confidence            35677773    33332    233 4556667788889999998 6543 21                          01


Q ss_pred             hhhHHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         105 TQDYMDLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       105 ~~~y~~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ...-....+..++.++|.++ .++.||+|||+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            11223344567888999999 99999999985

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=94.45  E-value=0.085  Score=41.52  Aligned_cols=68  Identities=13%  Similarity=-0.074  Sum_probs=44.6

Q ss_pred             hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q psy1726          42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP  120 (137)
Q Consensus        42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eip  120 (137)
                      +.++..+.++ ..+...+.++.+...+|.+.+..+.                          .....-+...+..++.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------------s~~~~g~~~~~~~~~~~i   76 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--------------------------TNFQAGLIQSAFYFGYFI   76 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------------------------CSHHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHH
Confidence            3445555566 7777777777777778876554332                          012223334456677777


Q ss_pred             HHHH-HHHHHHhcCCC
Q psy1726         121 GNYY-VFIRNRATYIS  135 (137)
Q Consensus       121 G~il-~llidriGRK~  135 (137)
                      +.++ +.+.||+|||+
T Consensus        77 ~~~~~G~l~dr~g~r~   92 (438)
T 3o7q_A           77 IPIPAGILMKKLSYKA   92 (438)
T ss_dssp             THHHHHHHHHHSCHHH
T ss_pred             HHHhHHHHHHHhcchH
Confidence            8888 99999999986

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=93.87  E-value=0.1  Score=41.93  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=45.3

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHH
Q psy1726          46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNY  123 (137)
Q Consensus        46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~i  123 (137)
                      ....++ ..+...+.||++..++|..+......        .+    -         ..+ ...-....+..++.+.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~---------~~s~~~~~~~~~~~~~~~~~~~~   72 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLIST--------GD----L---------HITRATAASIMAIYASMVYLSGT   72 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TS----C---------CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------hh----c---------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            444556 78888899999999999877653000        00    0         011 1222334456778888888


Q ss_pred             H-HHHHHH-hcCCC
Q psy1726         124 Y-VFIRNR-ATYIS  135 (137)
Q Consensus       124 l-~llidr-iGRK~  135 (137)
                      + +.+.|| +|||+
T Consensus        73 ~~g~l~dr~~g~r~   86 (491)
T 4aps_A           73 IGGFVADRIIGARP   86 (491)
T ss_dssp             HHHHHHHHTSCHHH
T ss_pred             HHHHHHhccccchH
Confidence            8 999999 89986

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=92.98  E-value=0.12  Score=42.13  Aligned_cols=73  Identities=11%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHH
Q psy1726          43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFP  120 (137)
Q Consensus        43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eip  120 (137)
                      +.+....++ ..+...+++|++..++|..+.+.-...            ...        ..+ ...-....+..++.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------------~~~--------~~s~~~~g~~~~~~~~~~~~   69 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS------------IPE--------ELRGAVAKDVFHSFVIGVYF   69 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC------------CSS--------STTTTTHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------ccc--------ccCHHHHHHHHHHHHHHHHH
Confidence            344445566 788888999999999998775421100            000        001 1112233445677778


Q ss_pred             HHHH-HHHHHHh-cCCC
Q psy1726         121 GNYY-VFIRNRA-TYIS  135 (137)
Q Consensus       121 G~il-~llidri-GRK~  135 (137)
                      +.++ +.+.||+ |||+
T Consensus        70 ~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A           70 FPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             THHHHHHHHTTSSCSHH
T ss_pred             HHHHHHHHHHHHhcchH
Confidence            8888 9999999 9985

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=92.86  E-value=0.39  Score=37.73  Aligned_cols=62  Identities=8%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             HHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHHHHHHHHHH-
Q psy1726          48 VFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        48 l~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l~eipG~il-  124 (137)
                      +.+. ..+...++++++..|+|.++.....                          .+. ..-....+.+++.++|.++ 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  308 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKH--------------------------FALDKSSWAYFLYEYAGIPGTLLC  308 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSC--------------------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 6777788889999999988764211                          111 1233455667889999999 


Q ss_pred             HHHHHHh--cCCC
Q psy1726         125 VFIRNRA--TYIS  135 (137)
Q Consensus       125 ~llidri--GRK~  135 (137)
                      ..+.||+  |||+
T Consensus       309 g~l~~~~~~~~~~  321 (451)
T 1pw4_A          309 GWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHTSTTCHH
T ss_pred             HHHHHHHhcCCch
Confidence            9999999  8874

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=92.83  E-value=0.25  Score=38.80  Aligned_cols=62  Identities=11%  Similarity=-0.030  Sum_probs=38.4

Q ss_pred             HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726          47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-  124 (137)
Q Consensus        47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-  124 (137)
                      .+.++ ..+...+..+.+...+|.+.+.. .               +           ....=+...+..++.+.+.++ 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------s-----------~~~~g~~~~~~~~~~~~~~~~~   82 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-F---------------S-----------RGDLGFALSGISIAYGFSKFIM   82 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTSST-T---------------C-----------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------c-----------HhHHHHHHHHHHHHHHHHHHhH
Confidence            33444 56666666666777778665432 1               0           111122334566777888888 


Q ss_pred             HHHHHHhcCCC
Q psy1726         125 VFIRNRATYIS  135 (137)
Q Consensus       125 ~llidriGRK~  135 (137)
                      +.+.||+|||+
T Consensus        83 G~l~dr~g~r~   93 (451)
T 1pw4_A           83 GSVSDRSNPRV   93 (451)
T ss_dssp             HHHHHHSCHHH
T ss_pred             HHHHHhcCchH
Confidence            99999999986

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=92.30  E-value=0.45  Score=37.91  Aligned_cols=26  Identities=4%  Similarity=-0.127  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ...+..++.+.+.++ +.+.||+|||+
T Consensus        48 ~~~~~~~~~~i~~~~~G~lsDr~Grr~   74 (417)
T 2cfq_A           48 IFAAISLFSLLFQPLFGLLSDKLGLRK   74 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            344556788888899 99999999997

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=91.87  E-value=0.6  Score=35.98  Aligned_cols=27  Identities=11%  Similarity=-0.156  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726         110 DLLWTTLAEFPGNYY-VFIRNRATYISQ  136 (137)
Q Consensus       110 ~~~i~~l~eipG~il-~llidriGRK~~  136 (137)
                      ...+..++.+.+.++ +.+.||+|||+.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~   67 (375)
T 2gfp_A           40 VMGAYLLTYGVSQLFYGPISDRVGRRPV   67 (375)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            344556777788888 999999999975

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=89.13  E-value=0.8  Score=36.46  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..+++++|.++ ..+.||+|||+
T Consensus       265 ~~~~~~~~~~~~~~~g~l~dr~g~~~  290 (417)
T 2cfq_A          265 TTMGELLNASIMFFAPLIINRIGGKN  290 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence            34556788899999 99999999985

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=80.58  E-value=0.7  Score=36.92  Aligned_cols=22  Identities=14%  Similarity=0.073  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         114 TTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       114 ~~l~eipG~il-~llidriGRK~  135 (137)
                      ..++.+.|.++ +.+.||+|||+
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHH
Confidence            35677889999 99999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	93.18
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	92.69
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	92.46

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.18  Score=35.99  Aligned_cols=24  Identities=4%  Similarity=-0.112  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         112 LWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       112 ~i~~l~eipG~il-~llidriGRK~  135 (137)
                      .+..++.+.+.++ +.+.||+|||+
T Consensus        50 s~~~l~~~i~~~~~G~l~Dr~grr~   74 (417)
T d1pv7a_          50 AAISLFSLLFQPLFGLLSDKLGLRK   74 (417)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchH
Confidence            3456667777778 99999999997

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.13  Score=38.07  Aligned_cols=25  Identities=12%  Similarity=-0.041  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726         111 LLWTTLAEFPGNYY-VFIRNRATYIS  135 (137)
Q Consensus       111 ~~i~~l~eipG~il-~llidriGRK~  135 (137)
                      ..+..++...|.++ +.+.||+|||+
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~   90 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRV   90 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            34556777888888 99999999996

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.32  Score=35.85  Aligned_cols=59  Identities=8%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726          52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR  130 (137)
Q Consensus        52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr  130 (137)
                      ..+......+++..|+|.++.....-                         .....-....+..++.++|.++ .++.||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  311 (447)
T d1pw4a_         257 ANVFVYLLRYGILDWSPTYLKEVKHF-------------------------ALDKSSWAYFLYEYAGIPGTLLCGWMSDK  311 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhhhhhhhcchhhhhhhccccccc-------------------------ccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence            56677778899999999877543210                         0122344556678888999999 999999


Q ss_pred             hcCCC
Q psy1726         131 ATYIS  135 (137)
Q Consensus       131 iGRK~  135 (137)
                      ++|+.
T Consensus       312 ~~~~~  316 (447)
T d1pw4a_         312 VFRGN  316 (447)
T ss_dssp             TSTTC
T ss_pred             ccccc
Confidence            99875