Psyllid ID: psy17336

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------
Protein Sequence
MLFSACCWYRDPHGLPWIEYLHSGASKI
Secondary Structure (PSIPRED)
cEEEEEEEEEcccccccEEHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEcEEEccccccccHHHHHHcccccc
Coil and Loop (DISEMBL)
mlfsaccwyrdphglpwieylhsgaski
Flexible Loop (DISEMBL)
MLFSACCwyrdphglpwieylhsgaski
Low Complexity Region (SEG)
MLFSACCWYRDPHGLPWIEYLHSGASKI
Disordered region (IsUnstruct)
**FSACCWYRDPHGLPWIEYLH******
Disordered Region (DISOPRED)
*LFSACCWYRDPHGLPWIEYLHSG****
Disordered Region (DISEMBL)
MLFSACCWYRDPHGLPWIEYLHSGASKI
Disordered Region (DISPRO)
MLFSACCWYRDPHGLPWIEYLHSGAS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFSACCWYRDPHGLPWIEYLHSGASKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	28
157127882	2081	hypothetical protein AaeL_AAEL010971 [Ae	1.0	0.013	0.964	4e-11
312370908	2559	hypothetical protein AND_22895 [Anophele	1.0	0.010	0.928	1e-10
170035814	1982	conserved hypothetical protein [Culex qu	1.0	0.014	0.928	1e-10
158294343	2535	AGAP005541-PA [Anopheles gambiae str. PE	1.0	0.011	0.928	1e-10
383858431	1909	PREDICTED: uncharacterized protein LOC10	1.0	0.014	0.928	1e-10
380018075	1876	PREDICTED: uncharacterized protein LOC10	1.0	0.014	0.928	1e-10
380018073	1870	PREDICTED: uncharacterized protein LOC10	1.0	0.014	0.928	1e-10
350406470	1933	PREDICTED: hypothetical protein LOC10074	1.0	0.014	0.928	1e-10
340716296	1929	PREDICTED: hypothetical protein LOC10064	1.0	0.014	0.928	1e-10
332030322	1883	Protein Jumonji [Acromyrmex echinatior]	1.0	0.014	0.928	1e-10

>gi|157127882|ref|XP_001655065.1| hypothetical protein AaeL_AAEL010971 [Aedes aegypti] gi|108872765|gb|EAT36990.1| AAEL010971-PA [Aedes aegypti]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GASKI
Sbjct: 1751 MLFSACCWYRDPHGLPWIEYLHTGASKI 1778

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370908|gb|EFR19209.1| hypothetical protein AND_22895 [Anopheles darlingi]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA+KI
Sbjct: 2200 MLFSACCWYRDPHGLPWIEYLHTGANKI 2227

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035814|ref|XP_001845762.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878199|gb|EDS41582.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA+KI
Sbjct: 1646 MLFSACCWYRDPHGLPWIEYLHTGANKI 1673

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294343|ref|XP_315541.4| AGAP005541-PA [Anopheles gambiae str. PEST] gi|157015520|gb|EAA11214.5| AGAP005541-PA [Anopheles gambiae str. PEST]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA+KI
Sbjct: 2178 MLFSACCWYRDPHGLPWIEYLHTGANKI 2205

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858431|ref|XP_003704705.1| PREDICTED: uncharacterized protein LOC100882081 [Megachile rotundata]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1622 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1649

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018075|ref|XP_003692962.1| PREDICTED: uncharacterized protein LOC100870657 isoform 2 [Apis florea]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1589 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1616

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018073|ref|XP_003692961.1| PREDICTED: uncharacterized protein LOC100870657 isoform 1 [Apis florea]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1583 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1610

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406470|ref|XP_003487781.1| PREDICTED: hypothetical protein LOC100745817 [Bombus impatiens]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1646 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1673

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716296|ref|XP_003396635.1| PREDICTED: hypothetical protein LOC100643807 [Bombus terrestris]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1642 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1669

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030322|gb|EGI70065.1| Protein Jumonji [Acromyrmex echinatior]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1    MLFSACCWYRDPHGLPWIEYLHSGASKI 28
            MLFSACCWYRDPHGLPWIEYLH+GA KI
Sbjct: 1593 MLFSACCWYRDPHGLPWIEYLHTGAKKI 1620

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	28
FB|FBgn0036004	2351	Jarid2 "Jumonji, AT rich inter	1.0	0.011	0.892	1.8e-09

FB|FBgn0036004 Jarid2 "Jumonji, AT rich interactive domain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 25/28 (89%), Positives = 27/28 (96%)

Query:     1 MLFSACCWYRDPHGLPWIEYLHSGASKI 28
             MLFSACCWYRDPHGL WIEYLH+GASK+
Sbjct:  2070 MLFSACCWYRDPHGLSWIEYLHTGASKL 2097


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.143   0.566    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       28        28   0.00091  102 3  12 22  0.43    24
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  360 (38 KB)
  Total size of DFA:  60 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  3.24u 0.09s 3.33t   Elapsed:  00:00:01
  Total cpu time:  3.24u 0.09s 3.33t   Elapsed:  00:00:01
  Start:  Thu Aug 15 14:45:44 2013   End:  Thu Aug 15 14:45:45 2013

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IMP

GO:0005700 "polytene chromosome" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	28
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	98.76
KOG1246|consensus	904		98.54
smart00558	57	JmjC A domain family that is part of the cupin met	98.35
KOG0958|consensus	690		97.62

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=98.76  E-value=2.2e-09  Score=54.40  Aligned_cols=28  Identities=36%  Similarity=0.508  Sum_probs=23.8

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||..+||+|++++++++|+|.|++|+
T Consensus         6 ~~~s~t~~H~e~~~~~sv~~~~~g~~k~   33 (114)
T PF02373_consen    6 MKGSYTPWHIEDNGLSSVNYHHFGGSKV   33 (114)
T ss_dssp             -TTEEEEEEE-GGG-EEEEEEEEESEEE
T ss_pred             CCCcCCCcEecCCCCceeeeeccCcceE
Confidence            6799999999999999999999999985

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>KOG1246|consensus

Probab=98.54  E-value=1.4e-08  Score=68.88  Aligned_cols=28  Identities=43%  Similarity=0.813  Sum_probs=27.0

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |+||++|||+++|.+++++|+|.|++|+
T Consensus       337 m~fs~~~wh~ed~~~~slny~h~g~pk~  364 (904)
T KOG1246|consen  337 MCFSTFCWHVEDHSLYSLNYLHLGEPKT  364 (904)
T ss_pred             ccccccccccCCccccccchhhcCCceE
Confidence            8999999999999999999999999985

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily

Probab=98.35  E-value=3.2e-07  Score=43.83  Aligned_cols=24  Identities=42%  Similarity=0.605  Sum_probs=21.8

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGAS   26 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~   26 (28)
                      |.+|++|||.|++.+  ++|+|.|+.
T Consensus        34 ~~~s~t~~H~d~~~~--~n~~~~~~~   57 (57)
T smart00558       34 MAGSVTPWHIDDYDL--VNYLHQGAG   57 (57)
T ss_pred             CCCCccceeEcCCCe--EEEEEecCC
Confidence            568999999999999  999999974

Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).

>KOG0958|consensus

Probab=97.62  E-value=2.5e-05  Score=55.02  Aligned_cols=24  Identities=38%  Similarity=0.618  Sum_probs=23.2

Q ss_pred             eeeEEEecCCCCCeEEeeeecCCC
Q psy17336          4 SACCWYRDPHGLPWIEYLHSGASK   27 (28)
Q Consensus         4 st~cw~rd~h~lp~ieYlhtga~k   27 (28)
                      +||=||.|+-.|++|+|||-||+|
T Consensus       184 ttFaWHtEdmDLySINyLHFGaPK  207 (690)
T KOG0958|consen  184 TTFAWHTEDMDLYSINYLHFGAPK  207 (690)
T ss_pred             cccccccCCccceeeeeeecCCCc
Confidence            689999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	28
3avr_A	531	Lysine-specific demethylase 6A; cupin superfamily,	3e-06
4ask_A	510	Lysine-specific demethylase 6B; oxidoreductase, KD	9e-05
2ox0_A	381	JMJC domain-containing histone demethylation PROT;	5e-04

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531

 Score = 39.5 bits (91), Expect = 3e-06
 Identities = 1/28 (3%), Positives = 7/28 (25%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           +  S    +++ +    +          
Sbjct: 268 VPGSRTPGHQENNNFCSVNINIGPGDCE 295

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510

 Score = 35.2 bits (80), Expect = 9e-05
 Identities = 1/28 (3%), Positives = 7/28 (25%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           +  S    +++ +    +          
Sbjct: 243 VPGSRTPGHQENNNFCSVNINIGPGDCE 270

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381

 Score = 33.1 bits (74), Expect = 5e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 1   MLFSACCWYRDPHGLPWIEYLHSGASKI 28
           M  ++  W+ +   L  I YLH G  K 
Sbjct: 202 MWKTSFAWHTEDMDLYSINYLHFGEPKS 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	28
2ox0_A	381	JMJC domain-containing histone demethylation PROT;	99.29
3opt_A	373	DNA damage-responsive transcriptional repressor R;	99.25
3dxt_A	354	JMJC domain-containing histone demethylation PROT;	99.23
2xxz_A	332	Lysine-specific demethylase 6B; oxidoreductase, hi	98.76
3avr_A	531	Lysine-specific demethylase 6A; cupin superfamily,	98.68
4ask_A	510	Lysine-specific demethylase 6B; oxidoreductase, KD	98.59

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*

Probab=99.29  E-value=3.9e-13  Score=85.90  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |+||++|||+|||+|+||+|||.||+|+
T Consensus       202 m~~S~f~WH~ED~~L~SINYlH~GapK~  229 (381)
T 2ox0_A          202 MWKTSFAWHTEDMDLYSINYLHFGEPKS  229 (381)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             ccccCcCceecCCcceeeEEeecCCceE
Confidence            8899999999999999999999999995

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*

Probab=99.25  E-value=9.4e-13  Score=84.46  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=27.0

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||++|||+|||+|+||+|||.||+|+
T Consensus       227 m~~Stf~WH~ED~~L~SINYlH~GapK~  254 (373)
T 3opt_A          227 LWKASFSWHLEDQDLYSINYIHFGAPKQ  254 (373)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             cccCCcceeecCCcceeEEEeecCCCeE
Confidence            8899999999999999999999999985

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*

Probab=99.23  E-value=1.2e-12  Score=83.41  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=27.0

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||++|||+|||+|+||+|||.|++|+
T Consensus       184 m~~Stf~WH~ED~~L~SINYlH~GapK~  211 (354)
T 3dxt_A          184 MWKTTFAWHTEDMDLYSINYLHLGEPKT  211 (354)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             cccCCCcceecCCcceEEEEEecCCceE
Confidence            8899999999999999999999999995

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}

Probab=98.76  E-value=1.4e-09  Score=68.56  Aligned_cols=28  Identities=4%  Similarity=-0.249  Sum_probs=26.8

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||++|||+|+++|.+|+|+|.|++|+
T Consensus       209 ~~gS~t~~H~Ed~~l~SiNynhgp~~~~  236 (332)
T 2xxz_A          209 VPGSRTPGHQENNNFCSVNINIGPGDCE  236 (332)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             cCcccccceecCCcceeEEeecCCCceE
Confidence            7899999999999999999999999985

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*

Probab=98.68  E-value=3.2e-09  Score=70.14  Aligned_cols=28  Identities=4%  Similarity=-0.249  Sum_probs=26.8

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||++|||+|++++++|+|+|.|++||
T Consensus       268 ~~gS~t~~H~E~~~l~SiNynhggg~~~  295 (531)
T 3avr_A          268 VPGSRTPGHQENNNFCSVNINIGPGDCE  295 (531)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             cCcccccceecCCcceeeEeecCCCCeE
Confidence            6799999999999999999999999985

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*

Probab=98.59  E-value=8.9e-09  Score=68.52  Aligned_cols=28  Identities=4%  Similarity=-0.249  Sum_probs=26.7

Q ss_pred             CeeeeeEEEecCCCCCeEEeeeecCCCC
Q psy17336          1 MLFSACCWYRDPHGLPWIEYLHSGASKI   28 (28)
Q Consensus         1 MvFst~cw~rd~h~lp~ieYlhtga~ki   28 (28)
                      |.||++|||+|+++|++|+|+|.|++|+
T Consensus       243 m~gS~t~wH~Ed~~l~SINynhggg~c~  270 (510)
T 4ask_A          243 VPGSRTPGHQENNNFCSVNINIGPGDCE  270 (510)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEESCEE
T ss_pred             cccccccceecCCcceeEEEeecCCcee
Confidence            7899999999999999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00